BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1884 (PAB1884) DE:Hypothetical protein
(167 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75116 hypothetical protein PAB1884 - Pyrococcus abyssi (st... 343 7e-94
pir||E71016 hypothetical protein PH1427 - Pyrococcus horikoshii ... 323 1e-87
pir||A75113 hypothetical protein PAB0485 - Pyrococcus abyssi (st... 115 4e-25
pir||C71020 phaE homolog - Pyrococcus horikoshii >gi|3257880|dbj... 114 8e-25
pir||G75059 hypothetical protein PAB1401 - Pyrococcus abyssi (st... 92 5e-18
pir||C72280 conserved hypothetical protein - Thermotoga maritima... 91 6e-18
pir||E71085 hypothetical protein PH0946 - Pyrococcus horikoshii ... 84 8e-16
pir||D75101 hypothetical protein PAB0802 - Pyrococcus abyssi (st... 82 4e-15
emb|CAB52778.1| (AJ243656) transmembrane protein 11.6 kDa [Metha... 68 7e-11
>pir||C75116 hypothetical protein PAB1884 - Pyrococcus abyssi (strain Orsay)
>gi|5458155|emb|CAB49644.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 167
Score = 343 bits (871), Expect = 7e-94
Identities = 167/167 (100%), Positives = 167/167 (100%)
Query: 1 MSFIAAFIWSYFMWLVLTAGSKGLLWSPQELIAGLIFSAIVGYATRNIIGEKAGRFLNPI 60
MSFIAAFIWSYFMWLVLTAGSKGLLWSPQELIAGLIFSAIVGYATRNIIGEKAGRFLNPI
Sbjct: 1 MSFIAAFIWSYFMWLVLTAGSKGLLWSPQELIAGLIFSAIVGYATRNIIGEKAGRFLNPI 60
Query: 61 KLVLFIAYAPVLFWGMVKANLDVAYRVITGKIRPGIVRVPVNLENDAQYTILSNSITLTP 120
KLVLFIAYAPVLFWGMVKANLDVAYRVITGKIRPGIVRVPVNLENDAQYTILSNSITLTP
Sbjct: 61 KLVLFIAYAPVLFWGMVKANLDVAYRVITGKIRPGIVRVPVNLENDAQYTILSNSITLTP 120
Query: 121 GTLTIEASPEEKALYVHWINIPEGLEWPKSSEPVSGPFEKWARRLGE 167
GTLTIEASPEEKALYVHWINIPEGLEWPKSSEPVSGPFEKWARRLGE
Sbjct: 121 GTLTIEASPEEKALYVHWINIPEGLEWPKSSEPVSGPFEKWARRLGE 167
>pir||E71016 hypothetical protein PH1427 - Pyrococcus horikoshii
>gi|3257850|dbj|BAA30533.1| (AP000006) 167aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 167
Score = 323 bits (818), Expect = 1e-87
Identities = 152/167 (91%), Positives = 162/167 (96%)
Query: 1 MSFIAAFIWSYFMWLVLTAGSKGLLWSPQELIAGLIFSAIVGYATRNIIGEKAGRFLNPI 60
MSFI AFIWSYFMWL+LTAGSKGLLW+ QELIAGLIFSAIVGYATRNIIGE+A RFLNP+
Sbjct: 1 MSFITAFIWSYFMWLILTAGSKGLLWNSQELIAGLIFSAIVGYATRNIIGERASRFLNPV 60
Query: 61 KLVLFIAYAPVLFWGMVKANLDVAYRVITGKIRPGIVRVPVNLENDAQYTILSNSITLTP 120
K +LFIAYAPVLFWGM+KANLDVAYRVITGKIRPGIV+VPVNLENDAQYTILSNSITLTP
Sbjct: 61 KWILFIAYAPVLFWGMIKANLDVAYRVITGKIRPGIVKVPVNLENDAQYTILSNSITLTP 120
Query: 121 GTLTIEASPEEKALYVHWINIPEGLEWPKSSEPVSGPFEKWARRLGE 167
GTLTIEASPEEK LYVHWINIP+GLEWP+SSEPVSGPFEKWARRLG+
Sbjct: 121 GTLTIEASPEEKVLYVHWINIPKGLEWPESSEPVSGPFEKWARRLGK 167
>pir||A75113 hypothetical protein PAB0485 - Pyrococcus abyssi (strain Orsay)
>gi|5458129|emb|CAB49618.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 168
Score = 115 bits (284), Expect = 4e-25
Identities = 67/167 (40%), Positives = 97/167 (57%), Gaps = 10/167 (5%)
Query: 3 FIAAFIWSYFMWLVLTAGSKGLLWSPQELIAGLIFSAIVGYATRNIIGEKAGRFLNPIKL 62
F+ FI ++ +WL LTA PQEL G IFSAIV T +I + L+P ++
Sbjct: 10 FLYTFIVTFIIWLFLTASL-----DPQELTIGAIFSAIVSALTYDIFTTRGLSNLHPRRI 64
Query: 63 VLFIAYAPVLFWGMVKANLDVAYRVITGK--IRPGIVRVPVNLENDAQYTILSNSITLTP 120
I Y P W M+KANLDVAYRV+ K I PGIV L+N+ L+NSITLTP
Sbjct: 65 AYAIIYVPYFLWAMIKANLDVAYRVLHPKRPINPGIVECRTVLKNEVGKLALANSITLTP 124
Query: 121 GTLTIEASPEEKALYVHWINIPEGLEWPKSSEPVSGPFEKWARRLGE 167
GT+T++ ++ ++HWI++ + +SE ++ PFEK+ + + E
Sbjct: 125 GTITLDVDGDK--YFIHWIDVKDS-SVEGASENITRPFEKFLKVIFE 168
>pir||C71020 phaE homolog - Pyrococcus horikoshii >gi|3257880|dbj|BAA30563.1|
(AP000006) 174aa long hypothetical phaE product
[Pyrococcus horikoshii]
Length = 174
Score = 114 bits (282), Expect = 8e-25
Identities = 67/167 (40%), Positives = 96/167 (57%), Gaps = 10/167 (5%)
Query: 3 FIAAFIWSYFMWLVLTAGSKGLLWSPQELIAGLIFSAIVGYATRNIIGEKAGRFLNPIKL 62
++ FI +WL LTA PQELI G+IFSAIV T +I + L+P ++
Sbjct: 16 YLYTFIVVLIIWLFLTASL-----DPQELIVGIIFSAIVAGFTYDIFTTRGLSNLHPRRI 70
Query: 63 VLFIAYAPVLFWGMVKANLDVAYRVITGK--IRPGIVRVPVNLENDAQYTILSNSITLTP 120
I Y P W M+KANLDVAYRV+ K I PGIV L+N+ L+NSITLTP
Sbjct: 71 AYAIIYIPYFLWAMIKANLDVAYRVLHPKRPINPGIVECKTELKNEVGKLALANSITLTP 130
Query: 121 GTLTIEASPEEKALYVHWINIPEGLEWPKSSEPVSGPFEKWARRLGE 167
GT+T++ + ++HWI++ + +SE ++ PFEK+ + + E
Sbjct: 131 GTITLDIDGDR--YFIHWIDVKDS-SIEGASEHITKPFEKFLKVIFE 174
>pir||G75059 hypothetical protein PAB1401 - Pyrococcus abyssi (strain Orsay)
>gi|5458885|emb|CAB50372.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 161
Score = 91.7 bits (224), Expect = 5e-18
Identities = 53/169 (31%), Positives = 96/169 (56%), Gaps = 15/169 (8%)
Query: 3 FIAAFIWSYFMWLVLTAGSKGLLWSPQELIAGLIFSAIVGYATRNIIGEKAGRFLNPIKL 62
FI FI ++ +++ T + +LI GLI IVG N + + + LNP++
Sbjct: 4 FIPTFILAFLTYVLFTGSIRTF-----DLITGLIVGIIVGLLMGNYLVKDDSKALNPVRW 58
Query: 63 VLFIAYAPVLFWGMV----KANLDVAYRVITGKIRPGIVRVPVNLENDAQYTILSNSITL 118
+ + Y W M+ +A+LDV R +TG PGIV+VP++++ D T+++ SIT
Sbjct: 59 LWGVVY---FLWYMLVAETRAHLDVIVRTLTGNYNPGIVKVPIDVKTDYAKTLIATSITN 115
Query: 119 TPGTLTIEASPEEKALYVHWINIPEGLEWPKSSEPVSGPFEKWARRLGE 167
TPGT+ ++ ++K +YV+WIN+ E ++ + + FE++A+++ E
Sbjct: 116 TPGTVVVDL--DDKFMYVNWINVTT-TEPEEAKKVICEDFERYAKKIFE 161
>pir||C72280 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981758|gb|AAD36280.1|AE001778_1 (AE001778)
conserved hypothetical protein [Thermotoga maritima]
Length = 155
Score = 91.3 bits (223), Expect = 6e-18
Identities = 56/160 (35%), Positives = 91/160 (56%), Gaps = 15/160 (9%)
Query: 4 IAAFIWSYFMWLVLTAGSKGLLWSPQELIAGLIFSAIVGYATRNIIGEKAGRFLNPIKLV 63
++ F+ S +WLV+T +S EL+AG++ S V R G + L P+++V
Sbjct: 1 MSVFLTSLILWLVITR------FSYSELLAGIVVSLAVSLIFRKYHGIRFDAKL-PLRIV 53
Query: 64 LF-IAYAPVLFWGMVKANLDVAYRVITGKI--RPGIVRVPVNLENDAQYTILSNSITLTP 120
+ + + P+ MVKAN+DVA RV+ ++ +PG V + NL+ DA L+NSITLTP
Sbjct: 54 RYAVMFLPIFIIEMVKANIDVALRVLNPRLPLKPGFVELKTNLKKDASRLFLANSITLTP 113
Query: 121 GTLTIEASPEEKALYVHWINIPEGLEWPKSSEPVSGPFEK 160
GTL+++ ++ ++VHWI + E +SG FE+
Sbjct: 114 GTLSVDV--KDDRIFVHWIEVKSTEE---KERYISGKFER 148
>pir||E71085 hypothetical protein PH0946 - Pyrococcus horikoshii
>gi|3257360|dbj|BAA30043.1| (AP000004) 201aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 201
Score = 84.3 bits (205), Expect = 8e-16
Identities = 56/169 (33%), Positives = 90/169 (53%), Gaps = 13/169 (7%)
Query: 9 WSYFM--WLVLTAGSKGLLW--SPQELIAGLIFSAIVGYATRNIIGEKAGRFLNPIKLVL 64
W F WL+L G+ S + LI G +AI+ Y R+ + E + +L
Sbjct: 32 WERFAITWLILLVFWLGITGDLSYRGLILGFPTTAIISYYLRDFLTEDIRHSKHLAWKIL 91
Query: 65 FIA------YAPVLFWGMVKANLDVAYRVITGKIRPGIVRVPVNLENDAQYTILSNSITL 118
+ A Y ++ + ++++NL VA + I PGIV++ +L +D TIL+NSITL
Sbjct: 92 YFAFIYLPQYLIIMGFRLLESNLKVAKHALLMDINPGIVKIRTDLHSDTGITILANSITL 151
Query: 119 TPGTLTIEA--SPEEKALYVHWINIPEGLEWPKSSEPVSGPFEKWARRL 165
TPGTLT++ + LYVHWI++ E L K+ E + G E+W +++
Sbjct: 152 TPGTLTLDVVKKLDGTYLYVHWIDV-ETLNVEKAGEIIKGDIEEWLKKM 199
>pir||D75101 hypothetical protein PAB0802 - Pyrococcus abyssi (strain Orsay)
>gi|5458625|emb|CAB50113.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 201
Score = 81.9 bits (199), Expect = 4e-15
Identities = 53/169 (31%), Positives = 91/169 (53%), Gaps = 13/169 (7%)
Query: 9 WSYFM--WLVLTAGSKGLLW--SPQELIAGLIFSAIVGYATRNIIGEKAGRFLNPIKLVL 64
W F+ W+ L A G+ S + + G I +AI+ + R+ + + + +L
Sbjct: 32 WERFVLTWVTLMAFWLGISCDLSYRGVTLGAITTAIISFYLRDFLTDDVRHSKHLAWKIL 91
Query: 65 FIA------YAPVLFWGMVKANLDVAYRVITGKIRPGIVRVPVNLENDAQYTILSNSITL 118
+ A Y ++ + ++++N+ VA I I PGIV++ L +D TIL+NSITL
Sbjct: 92 YFALIYFPQYLMIMAFRLLESNIKVARHAILMDINPGIVKIKTTLHSDTGITILANSITL 151
Query: 119 TPGTLTIEASP--EEKALYVHWINIPEGLEWPKSSEPVSGPFEKWARRL 165
TPGTLTI+ + + LYVHWI++ E L ++ E + G E+W +++
Sbjct: 152 TPGTLTIDVAKKLDGTYLYVHWIDV-ETLNVERAGELIKGDIEEWLKKV 199
>emb|CAB52778.1| (AJ243656) transmembrane protein 11.6 kDa [Methanobacterium
thermoautotrophicum]
Length = 103
Score = 67.9 bits (163), Expect = 7e-11
Identities = 41/107 (38%), Positives = 60/107 (55%), Gaps = 8/107 (7%)
Query: 61 KLVLFIAYAPVLFWGMVKANLDVAYRVITGKIRPGIVRVPVNLENDAQYTILSNSITLTP 120
+++ IAY VL + ++KA DVA + + G I P IV + L TIL+NSITLTP
Sbjct: 5 RILYGIAYFLVLIYEILKATADVAVKTLNGNIEPVIVEIETELTRPVSQTILANSITLTP 64
Query: 121 GTLTIEASPEEKALYVHWINIPEGLEWPKSSEPVSGPFEKWARRLGE 167
GTL+++ E + L V I +P+S E + PFE + R + E
Sbjct: 65 GTLSVDLDSENRILKVAAI-------YPRSREDII-PFEPYIRGMLE 103
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.140 0.438
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66087858
Number of Sequences: 2977
Number of extensions: 2677660
Number of successful extensions: 5551
Number of sequences better than 1.0e-10: 9
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 5540
Number of HSP's gapped (non-prelim): 9
length of query: 167
length of database: 189,106,746
effective HSP length: 49
effective length of query: 118
effective length of database: 159,780,883
effective search space: 18854144194
effective search space used: 18854144194
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 162 (67.5 bits)