BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1885 (PAB1885) DE:Hypothetical protein
         (121 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75116 hypothetical protein PAB1885 - Pyrococcus abyssi (st...   242  1e-63
sp|O59098|YE28_PYRHO HYPOTHETICAL PROTEIN PH1428 >gi|7519141|pir...   223  5e-58
sp|Q52966|YMU2_RHIME HYPOTHETICAL 12.4 KDA PROTEIN IN MUCR 5'REG...    74  7e-13

>pir||A75116 hypothetical protein PAB1885 - Pyrococcus abyssi (strain Orsay)
           >gi|5458153|emb|CAB49642.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 121
           
 Score =  242 bits (611), Expect = 1e-63
 Identities = 121/121 (100%), Positives = 121/121 (100%)

Query: 1   MIEYLILICLAISVTFNTLGSIALHRFPDVYTRLHGATKCTTFGTIFATFAVVIHALARL 60
           MIEYLILICLAISVTFNTLGSIALHRFPDVYTRLHGATKCTTFGTIFATFAVVIHALARL
Sbjct: 1   MIEYLILICLAISVTFNTLGSIALHRFPDVYTRLHGATKCTTFGTIFATFAVVIHALARL 60

Query: 61  NDTGNPKYLQMALHSLVALLALLLTNPVGAHAIAKASHLSGYLPKRAVVDAYLEKRRESN 120
           NDTGNPKYLQMALHSLVALLALLLTNPVGAHAIAKASHLSGYLPKRAVVDAYLEKRRESN
Sbjct: 61  NDTGNPKYLQMALHSLVALLALLLTNPVGAHAIAKASHLSGYLPKRAVVDAYLEKRRESN 120

Query: 121 E 121
           E
Sbjct: 121 E 121


>sp|O59098|YE28_PYRHO HYPOTHETICAL PROTEIN PH1428 >gi|7519141|pir||F71016 hypothetical
           protein PH1428 - Pyrococcus horikoshii
           >gi|3257851|dbj|BAA30534.1| (AP000006) 121aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 121
           
 Score =  223 bits (563), Expect = 5e-58
 Identities = 111/121 (91%), Positives = 116/121 (95%)

Query: 1   MIEYLILICLAISVTFNTLGSIALHRFPDVYTRLHGATKCTTFGTIFATFAVVIHALARL 60
           MIEYLIL CLAISVTFN LGSIALHRFPDVYTRLHGATKCTTFGTIFATFAVVI ALARL
Sbjct: 1   MIEYLILTCLAISVTFNMLGSIALHRFPDVYTRLHGATKCTTFGTIFATFAVVIFALARL 60

Query: 61  NDTGNPKYLQMALHSLVALLALLLTNPVGAHAIAKASHLSGYLPKRAVVDAYLEKRRESN 120
           N+T NPKYLQMALHSL+ALLALLLTNPVGAHAIA+ASHLSGYLPKRAVVDAYLE+RRE +
Sbjct: 61  NETRNPKYLQMALHSLIALLALLLTNPVGAHAIARASHLSGYLPKRAVVDAYLERRREKD 120

Query: 121 E 121
           E
Sbjct: 121 E 121


>sp|Q52966|YMU2_RHIME HYPOTHETICAL 12.4 KDA PROTEIN IN MUCR 5'REGION (ORF2)
           >gi|642656|gb|AAA74238.1| (L37353) unknown
           [Sinorhizobium meliloti]
           Length = 116
           
 Score = 73.7 bits (178), Expect = 7e-13
 Identities = 37/111 (33%), Positives = 64/111 (57%), Gaps = 11/111 (9%)

Query: 1   MIEYLILICLAISVTFNTLGSIALHRFPDVYTRLHGATKCTTFGTIFATFAVVIHALARL 60
           +I Y++ + + +   F+ L ++ L RFPD+YTR+H A+K  T G+    FA  +H+L   
Sbjct: 5   IIAYVVALIMVVGACFSLLAAVGLVRFPDLYTRMHAASKAGTVGSGLLLFAAGLHSLDAA 64

Query: 61  NDTGNPKYLQMALHSLVALLALLLTNPVGAHAIAKASHLSGY-LPKRAVVD 110
                     + + +L   +  +LT P+ AH +AKA+H +GY + KR+V+D
Sbjct: 65  ----------VFVRALAGFVFFVLTAPISAHLLAKAAHQAGYRMSKRSVID 105


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.326    0.138    0.399 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41864448
Number of Sequences: 2977
Number of extensions: 1441335
Number of successful extensions: 3407
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3404
Number of HSP's gapped (non-prelim): 4
length of query: 121
length of database: 189,106,746
effective HSP length: 52
effective length of query: 69
effective length of database: 157,985,422
effective search space: 10900994118
effective search space used: 10900994118
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 160 (66.7 bits)