BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1886 (PAB1886) DE:Hypothetical protein
(147 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75115 hypothetical protein PAB1886 - Pyrococcus abyssi (st... 299 1e-80
pir||H71016 hypothetical protein PH1429 - Pyrococcus horikoshii ... 285 2e-76
pir||D75113 hypothetical protein PAB2415 - Pyrococcus abyssi (st... 92 3e-18
pir||A71020 hypothetical protein PH1454 - Pyrococcus horikoshii ... 92 4e-18
pir||B64463 hypothetical protein MJ1307 - Methanococcus jannasch... 82 4e-15
pir||G72280 conserved hypothetical protein - Thermotoga maritima... 82 5e-15
emb|CAB52786.1| (AJ243656) transmembrane protein 16.3 kDa [Metha... 77 9e-14
pir||B69033 conserved hypothetical protein MTH1243 - Methanobact... 76 2e-13
>pir||H75115 hypothetical protein PAB1886 - Pyrococcus abyssi (strain Orsay)
>gi|5458152|emb|CAB49641.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 147
Score = 299 bits (758), Expect = 1e-80
Identities = 147/147 (100%), Positives = 147/147 (100%)
Query: 1 MSDMGVIVKTNARALIPLIGIFGCYIVLHGHLTPGGGFQGGATIVGTGLLFLIAFGVDEA 60
MSDMGVIVKTNARALIPLIGIFGCYIVLHGHLTPGGGFQGGATIVGTGLLFLIAFGVDEA
Sbjct: 1 MSDMGVIVKTNARALIPLIGIFGCYIVLHGHLTPGGGFQGGATIVGTGLLFLIAFGVDEA 60
Query: 61 KKRINKDLYSALEGVGGLVFLGVAMLGLSVAFFYNVLWHKGPLFNGKPGTLLSAGFLPIM 120
KKRINKDLYSALEGVGGLVFLGVAMLGLSVAFFYNVLWHKGPLFNGKPGTLLSAGFLPIM
Sbjct: 61 KKRINKDLYSALEGVGGLVFLGVAMLGLSVAFFYNVLWHKGPLFNGKPGTLLSAGFLPIM 120
Query: 121 NLGVGLKVFTGLVSAVFALSLFRRWKG 147
NLGVGLKVFTGLVSAVFALSLFRRWKG
Sbjct: 121 NLGVGLKVFTGLVSAVFALSLFRRWKG 147
>pir||H71016 hypothetical protein PH1429 - Pyrococcus horikoshii
>gi|3257853|dbj|BAA30536.1| (AP000006) 147aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 147
Score = 285 bits (722), Expect = 2e-76
Identities = 137/146 (93%), Positives = 143/146 (97%)
Query: 1 MSDMGVIVKTNARALIPLIGIFGCYIVLHGHLTPGGGFQGGATIVGTGLLFLIAFGVDEA 60
MSDMGVIVKTNARALIPLIG+FG YI+LHGHLTPGGGFQGGATIVGT LLFLIAFGVDEA
Sbjct: 1 MSDMGVIVKTNARALIPLIGVFGSYIILHGHLTPGGGFQGGATIVGTALLFLIAFGVDEA 60
Query: 61 KKRINKDLYSALEGVGGLVFLGVAMLGLSVAFFYNVLWHKGPLFNGKPGTLLSAGFLPIM 120
KKRINKDLYSALEG+GGLVFLG AMLGLSVAFFYN+LWHKGPLFNG+PGTLLSAGFLPIM
Sbjct: 61 KKRINKDLYSALEGIGGLVFLGAAMLGLSVAFFYNILWHKGPLFNGRPGTLLSAGFLPIM 120
Query: 121 NLGVGLKVFTGLVSAVFALSLFRRWK 146
NLGVGLKVFTGLVSAVFAL+LFRRWK
Sbjct: 121 NLGVGLKVFTGLVSAVFALALFRRWK 146
>pir||D75113 hypothetical protein PAB2415 - Pyrococcus abyssi (strain Orsay)
>gi|5458132|emb|CAB49621.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 235
Score = 92.1 bits (225), Expect = 3e-18
Identities = 50/129 (38%), Positives = 74/129 (56%), Gaps = 6/129 (4%)
Query: 6 VIVKTNARALIPLIGIFGCYIVLHGHLTPGGGFQGGATIVGTGLLFLIAFGVDEAKKRIN 65
V++ T ++ L P I +FG YI +HGHLTPGGGF GGATI LL +AF V E I
Sbjct: 97 VVLTTGSKLLFPFIVLFGMYIFIHGHLTPGGGFPGGATIATAFLLMYLAFIVYE----IP 152
Query: 66 KDLYSALEGVGGLVFLGVAMLGLSVA--FFYNVLWHKGPLFNGKPGTLLSAGFLPIMNLG 123
+ EG+ G+ ++ V ++GL++ F ++ +W G L S GF+P++
Sbjct: 153 HKGFETTEGLAGMSYVLVGLIGLAIGGYFLFDWIWQTWHWGTSNLGRLFSGGFIPVIYTI 212
Query: 124 VGLKVFTGL 132
+G+KV T L
Sbjct: 213 IGIKVGTEL 221
>pir||A71020 hypothetical protein PH1454 - Pyrococcus horikoshii
>gi|3257878|dbj|BAA30561.1| (AP000006) 241aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 241
Score = 91.7 bits (224), Expect = 4e-18
Identities = 49/129 (37%), Positives = 74/129 (56%), Gaps = 6/129 (4%)
Query: 6 VIVKTNARALIPLIGIFGCYIVLHGHLTPGGGFQGGATIVGTGLLFLIAFGVDEAKKRIN 65
+++ T ++ L P I +FG YI +HGHLTPGGGF GGATI LL +AF V E R
Sbjct: 103 LVLTTGSKLLFPFIMLFGMYIFIHGHLTPGGGFPGGATIATGFLLMYLAFIVYEIPHR-- 160
Query: 66 KDLYSALEGVGGLVFLGVAMLGLSVA--FFYNVLWHKGPLFNGKPGTLLSAGFLPIMNLG 123
+ EG+ G+ ++ V ++GL++ F ++ +W G L S GF+P++
Sbjct: 161 --GFEVTEGLAGMSYVLVGLIGLAIGGYFLFDWIWQTWHFGTSNLGRLFSGGFIPVIYTL 218
Query: 124 VGLKVFTGL 132
+G+KV T L
Sbjct: 219 IGIKVGTEL 227
>pir||B64463 hypothetical protein MJ1307 - Methanococcus jannaschii
>gi|1591946|gb|AAB99315.1| (U67571) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 262
Score = 81.9 bits (199), Expect = 4e-15
Identities = 53/136 (38%), Positives = 74/136 (53%), Gaps = 3/136 (2%)
Query: 7 IVKTNARALIPLIGIFGCYIVLHGHLTPGGGFQGGATIVGTGLLFLIAFGVDEAKKRINK 66
I+K A + L+ G VL GH+TPGGGFQGGA I +L +IAFG + +K
Sbjct: 111 IIKFLAFPMSVLMVALGIITVLGGHITPGGGFQGGALIAAAFILSVIAFGSNSPLWFDHK 170
Query: 67 DLYSALEGVG--GLVFLGVAMLGLSVAFFYNVLWHKGPLFNGKPGTLLSAGFLPIMNLGV 124
L LE +G G + LGVA + + + +N G P +++AG +P +N+ V
Sbjct: 171 FL-EKLEALGALGYLLLGVAGMFIGGYYLFNFTEINGFTIFPAPKEIITAGIIPYLNIAV 229
Query: 125 GLKVFTGLVSAVFALS 140
GLKV GL +A F LS
Sbjct: 230 GLKVLAGLSTAAFLLS 245
>pir||G72280 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981762|gb|AAD36284.1|AE001778_5 (AE001778)
conserved hypothetical protein [Thermotoga maritima]
Length = 254
Score = 81.5 bits (198), Expect = 5e-15
Identities = 50/135 (37%), Positives = 78/135 (57%), Gaps = 15/135 (11%)
Query: 7 IVKTNARALIPLIGIFGCYIVLHGHLTPGGGFQGGATIVGTGLLFLIAFGVDEAKKRINK 66
I+K + L+PLI +FG YI +HGHL+PGGGF GG T++ +L L + + +N+
Sbjct: 125 ILKVSTGILLPLILMFGVYIFVHGHLSPGGGFPGG-TVIAAAILLLY---LSNEEFTLNE 180
Query: 67 DLYSALEGVGGLVFLGVAMLGLSV--AFFYNVLWHKGPLFNGKPGTLLSAGFLPIMNLGV 124
LEG G +++ V ++GL AF YN L G+ G L SAG +P++ + +
Sbjct: 181 GRAKLLEGSMGALYVLVGLIGLLTGGAFLYNF------LSTGRVGDLFSAGVVPVVYIII 234
Query: 125 GLKV---FTGLVSAV 136
GLKV +G++S +
Sbjct: 235 GLKVGSELSGVISEI 249
>emb|CAB52786.1| (AJ243656) transmembrane protein 16.3 kDa [Methanobacterium
thermoautotrophicum]
Length = 153
Score = 77.3 bits (187), Expect = 9e-14
Identities = 47/149 (31%), Positives = 72/149 (47%), Gaps = 11/149 (7%)
Query: 4 MGVIVKTNARALIPLIGIFGCYIVLHGHLTPGGGFQGGATIVGTGLLFLIAFGVDEAKKR 63
M I+K A I G VL GH+TPGGGFQGGA + + + +G++++ +
Sbjct: 1 MSTILKIFAFPAAIFIMCLGILTVLGGHITPGGGFQGGAMVAAGFIFCAVVYGIEKSPFQ 60
Query: 64 INKDLYSALEGVGGLVFLGVAMLGLSVAFF---------YNVLWHKGPLFNGKPGTLLSA 114
+ + SA+E +G L ++ + + GL + F Y + FN T A
Sbjct: 61 FSHEFMSAMESIGALGYVALGLCGLLFSGFFLYNLGVDLYGISQSVSGFFNYPDPT--HA 118
Query: 115 GFLPIMNLGVGLKVFTGLVSAVFALSLFR 143
G +P +N+ VGLKV GL + V FR
Sbjct: 119 GIIPYLNIVVGLKVLVGLSAIVITFMEFR 147
>pir||B69033 conserved hypothetical protein MTH1243 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622355|gb|AAB85732.1| (AE000891) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 153
Score = 76.1 bits (184), Expect = 2e-13
Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 9/148 (6%)
Query: 4 MGVIVKTNARALIPLIGIFGCYIVLHGHLTPGGGFQGGATIVGTGLLFLIAFGVDEAKKR 63
M I+K A I G VL GH+TPGGGFQGGA + + + +G++ + +
Sbjct: 1 MSTILKIFAFPAAIFIMCLGILTVLGGHITPGGGFQGGAMVAAGFIFCAVVYGIERSPFQ 60
Query: 64 INKDLYSALEGVGGLVFLGVAMLGL--SVAFFYNV------LWHKGPLFNGKPGTLLSAG 115
+ + SA+E + L ++G+ + GL S F YN+ + H F P AG
Sbjct: 61 FSHEFMSAMESIVALGYVGLGLCGLLFSGFFLYNLGVDLYGVSHAVSGFFNYPDP-TDAG 119
Query: 116 FLPIMNLGVGLKVFTGLVSAVFALSLFR 143
+P +N+ VGLKV GL + V FR
Sbjct: 120 IIPYLNIVVGLKVMVGLSAIVITFMEFR 147
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.328 0.149 0.461
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58865590
Number of Sequences: 2977
Number of extensions: 2602803
Number of successful extensions: 6966
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 6958
Number of HSP's gapped (non-prelim): 8
length of query: 147
length of database: 189,106,746
effective HSP length: 46
effective length of query: 101
effective length of database: 161,576,344
effective search space: 16319210744
effective search space used: 16319210744
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 162 (67.5 bits)