BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1887 (PAB1887) DE:Hypothetical protein
(117 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75115 hypothetical protein PAB1887 - Pyrococcus abyssi (st... 228 1e-59
pir||A71017 hypothetical protein PH1430 - Pyrococcus horikoshii ... 224 4e-58
pir||E75113 long hypothetical protein PAB0488 - Pyrococcus abyss... 101 4e-21
pir||H71019 hypothetical protein PH1453 - Pyrococcus horikoshii ... 98 4e-20
pir||H72280 conserved hypothetical protein - Thermotoga maritima... 78 3e-14
gb|AAG19081.1| (AE005007) Vng0565c [Halobacterium sp. NRC-1] 75 3e-13
>pir||G75115 hypothetical protein PAB1887 - Pyrococcus abyssi (strain Orsay)
>gi|5458151|emb|CAB49640.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 117
Score = 228 bits (576), Expect = 1e-59
Identities = 117/117 (100%), Positives = 117/117 (100%)
Query: 1 MIAFQYLTAIIMVALGIYALLYKRNLIKLILALDLIDSGIHLLLISEGYRIENGLPTTAP 60
MIAFQYLTAIIMVALGIYALLYKRNLIKLILALDLIDSGIHLLLISEGYRIENGLPTTAP
Sbjct: 1 MIAFQYLTAIIMVALGIYALLYKRNLIKLILALDLIDSGIHLLLISEGYRIENGLPTTAP 60
Query: 61 IYTGYEGGAMVAPIPQALVLTSIVIGVCVLSLAVALTVNAYRHYGTLDITKLRRLRG 117
IYTGYEGGAMVAPIPQALVLTSIVIGVCVLSLAVALTVNAYRHYGTLDITKLRRLRG
Sbjct: 61 IYTGYEGGAMVAPIPQALVLTSIVIGVCVLSLAVALTVNAYRHYGTLDITKLRRLRG 117
>pir||A71017 hypothetical protein PH1430 - Pyrococcus horikoshii
>gi|3257854|dbj|BAA30537.1| (AP000006) 120aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 120
Score = 224 bits (564), Expect = 4e-58
Identities = 113/117 (96%), Positives = 116/117 (98%)
Query: 1 MIAFQYLTAIIMVALGIYALLYKRNLIKLILALDLIDSGIHLLLISEGYRIENGLPTTAP 60
MIAFQYLTAIIMV LGIYALLYKRNLIKLILALDLIDSGIHLLLISEGYR+ENGLP+TAP
Sbjct: 4 MIAFQYLTAIIMVTLGIYALLYKRNLIKLILALDLIDSGIHLLLISEGYRLENGLPSTAP 63
Query: 61 IYTGYEGGAMVAPIPQALVLTSIVIGVCVLSLAVALTVNAYRHYGTLDITKLRRLRG 117
IYTGYEGGAMVAPIPQALVLTSIVIGVCVLSLAVALTVNAYRHYGTLD+TKLRRLRG
Sbjct: 64 IYTGYEGGAMVAPIPQALVLTSIVIGVCVLSLAVALTVNAYRHYGTLDLTKLRRLRG 120
>pir||E75113 long hypothetical protein PAB0488 - Pyrococcus abyssi (strain
Orsay) >gi|5458133|emb|CAB49622.1| (AJ248285) LONG
HYPOTHETICAL PROTEIN [Pyrococcus abyssi]
Length = 114
Score = 101 bits (248), Expect = 4e-21
Identities = 52/117 (44%), Positives = 79/117 (67%), Gaps = 3/117 (2%)
Query: 1 MIAFQYLTAIIMVALGIYALLYKRNLIKLILALDLIDSGIHLLLISEGYRIENGLPTTAP 60
MI+ Y AI +V +G+YA+L K+NL+K+++ L ++++G++LLLIS GY P +
Sbjct: 1 MISSYYFGAIALVLIGLYAVLVKKNLLKILIGLSIMETGVNLLLISIGYVSGRSAPILSE 60
Query: 61 IYTGYEGGAMVAPIPQALVLTSIVIGVCVLSLAVALTVNAYRHYGTLDITKLRRLRG 117
G V PIPQALVLT+IVIGV ++A+++ + Y YGTL+I ++RRLRG
Sbjct: 61 ---GIGPNQAVDPIPQALVLTAIVIGVATTAMALSVAIILYEKYGTLNIEEIRRLRG 114
>pir||H71019 hypothetical protein PH1453 - Pyrococcus horikoshii
>gi|3257877|dbj|BAA30560.1| (AP000006) 114aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 114
Score = 97.9 bits (240), Expect = 4e-20
Identities = 51/117 (43%), Positives = 78/117 (66%), Gaps = 3/117 (2%)
Query: 1 MIAFQYLTAIIMVALGIYALLYKRNLIKLILALDLIDSGIHLLLISEGYRIENGLPTTAP 60
MI+ Y AI +V +G+YA+L K+NL+K+++ L ++++G++LLLIS GY P +
Sbjct: 1 MISAYYFGAISLVLIGLYAVLVKKNLLKILIGLSIMETGVNLLLISIGYVSGRSAPILSE 60
Query: 61 IYTGYEGGAMVAPIPQALVLTSIVIGVCVLSLAVALTVNAYRHYGTLDITKLRRLRG 117
G V PIPQALVLT+IVIGV ++A+++ + Y Y TL+I ++RRLRG
Sbjct: 61 ---GITPSQAVDPIPQALVLTAIVIGVATTAMALSVAIILYEKYRTLNIEEIRRLRG 114
>pir||H72280 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981763|gb|AAD36285.1|AE001778_6 (AE001778)
conserved hypothetical protein [Thermotoga maritima]
Length = 112
Score = 78.4 bits (190), Expect = 3e-14
Identities = 44/114 (38%), Positives = 72/114 (62%), Gaps = 8/114 (7%)
Query: 6 YLTAIIMVALGIYALLYKRNLIKLILALDLIDSGIHLLLISEGYRIENGLPTTAPIYTGY 65
Y+ +I++ +GIY LL ++NL K +++L +ID+ ++L +I+ GYR APIYT
Sbjct: 3 YVISILLAGIGIYGLLTQKNLFKHLVSLTIIDTAVNLFIIALGYR-----EGDAPIYTDR 57
Query: 66 EGG---AMVAPIPQALVLTSIVIGVCVLSLAVALTVNAYRHYGTLDITKLRRLR 116
V P+PQALVLT+IVIGV VL+L +L V + +LD+ +++ ++
Sbjct: 58 VMNFSLNFVDPLPQALVLTAIVIGVGVLALGASLLVRIKEKHSSLDLEEMKGVK 111
>gb|AAG19081.1| (AE005007) Vng0565c [Halobacterium sp. NRC-1]
Length = 118
Score = 74.9 bits (181), Expect = 3e-13
Identities = 35/111 (31%), Positives = 65/111 (58%), Gaps = 6/111 (5%)
Query: 6 YLTAIIMVALGIYALLYKRNLIKLILALDLIDSGIHLLLISEGYRIENGLPTTAPIYTGY 65
Y+ + +++ +G Y ++ NL+K ++ +++ +GI L I+ Y +E G P T +
Sbjct: 11 YIASFLLIGIGTYVMIAAGNLVKKVIGMNIFQTGIFLFFIASAY-VEGGTPPLLTSETPH 69
Query: 66 EGGAMVAPIPQALVLTSIVIGVCVLSLAVALTVNAYRHYGTLDITKLRRLR 116
V+P+P L+LT+IV+GV + ++A+ + V Y YGTLD L+ +R
Sbjct: 70 -----VSPVPHVLILTAIVVGVALTAVALGMIVRIYDDYGTLDERTLKEVR 115
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.328 0.146 0.413
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38180953
Number of Sequences: 2977
Number of extensions: 1430379
Number of successful extensions: 4992
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4986
Number of HSP's gapped (non-prelim): 6
length of query: 117
length of database: 189,106,746
effective HSP length: 51
effective length of query: 66
effective length of database: 158,583,909
effective search space: 10466537994
effective search space used: 10466537994
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 160 (66.7 bits)