BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1888 (cooM-like) DE:CO-induced hydrogenase related, subunit
M
(510 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75115 co-induced hydrogenase related, chain M PAB1888 - Py... 1008 0.0
pir||B71017 hypothetical protein PH1431 - Pyrococcus horikoshii ... 941 0.0
pir||F75059 NADH-dehydrogenase related PAB1402 - Pyrococcus abys... 326 5e-88
pir||F75113 NADH dehydrogenase I N chain PAB2416 - Pyrococcus ab... 267 2e-70
pir||G71019 hypothetical protein PH1452 - Pyrococcus horikoshii ... 257 2e-67
gb|AAF21815.1|AF097740_4 (AF097740) multiple resistance and pH r... 233 4e-60
pir||T51314 probable CO-induced hydrogenase complex chain CooM [... 232 9e-60
pir||G75060 hydrogenase-4 component B (EC 1.-.-.-) PAB1392 - Pyr... 222 6e-57
gb|AAG19080.1| (AE005007) NADH dehydrogenase/oxidoreductase; Ndh... 220 2e-56
dbj|BAB05035.1| (AP001511) Na+/H+ antiporter [Bacillus halodurans] 219 8e-56
sp|P23482|HYFB_ECOLI HYDROGENASE-4 COMPONENT B >gi|7446810|pir||... 215 9e-55
dbj|BAA35095.1| (AB015981) MnhA [Staphylococcus aureus] 210 4e-53
pir||H82494 probable NADH dehydrogenase VCA0155 [imported] - Vib... 209 5e-53
dbj|BAA35098.1| (AB015981) MnhD [Staphylococcus aureus] 200 3e-50
emb|CAA63734.1| (X93358) phaA [Sinorhizobium meliloti] 198 1e-49
gb|AAF21812.1|AF097740_1 (AF097740) multiple resistance and pH r... 197 3e-49
pir||B72281 hypothetical protein TM1212 - Thermotoga maritima (s... 195 9e-49
gb|AAF65741.1|AF228525_11 (AF228525) F420H2 dehydrogenase subuni... 195 9e-49
gb|AAF65739.1|AF228525_9 (AF228525) F420H2 dehydrogenase subunit... 194 2e-48
sp|Q55429|NU5C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5 >... 193 3e-48
emb|CAC12090.1| (AL445066) NADH dehydrogenase, chain L related p... 192 8e-48
pir||A70010 NADH dehydrogenase homolog yufT - Bacillus subtilis ... 189 5e-47
emb|CAB07908.1| (Z93932) unknown [Bacillus subtilis] 189 9e-47
gb|AAF25169.1|AF182341_1 (AF182341) NADH dehydrogenase [Buergers... 189 9e-47
pir||T13058 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 188 1e-46
pir||T13393 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 187 2e-46
gb|AAF08856.1|AF194824_1 (AF194824) NADH dehydrogenase [Aptenia ... 187 2e-46
gb|AAA64704.1| (U21986) NADH dehydrogenase F [Panicum virgatum] 187 3e-46
pir||S61395 probable Na+/H+-exchanging protein system component ... 186 5e-46
gb|AAG12236.1| (AF163470) NADH dehydrogenase subunit F [Eriophor... 186 5e-46
gb|AAF08863.1|AF194831_1 (AF194831) NADH dehydrogenase [Montia p... 186 5e-46
pir||D64463 conserved hypothetical protein MJ1309 - Methanococcu... 186 5e-46
pir||B70420 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 185 8e-46
gb|AAF08855.1|AF194823_1 (AF194823) NADH dehydrogenase [Allionia... 185 8e-46
pir||G70008 NADH dehydrogenase (ubiquinone) homolog yufD - Bacil... 185 8e-46
pir||T12677 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 185 8e-46
gb|AAD26238.1| (AF117421) NADH dehydrogenase [Sorghastrum nutans] 185 8e-46
gb|AAF08858.1|AF194826_1 (AF194826) NADH dehydrogenase [Mirabili... 185 1e-45
pir||T13391 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 185 1e-45
gi|11467252 NADH dehydrogenase ND5 [Zea mays] >gi|1171820|sp|P46... 185 1e-45
gb|AAA64192.1| (U21988) NADH dehydrogenase F [Danthoniopsis peti... 185 1e-45
gb|AAA64203.1| (U21999) NADH dehydrogenase F [Diarrhena obovata] 184 2e-45
gi|11466844 NADH dehydrogenase ND5 [Oryza sativa] >gi|128769|sp|... 184 2e-45
gb|AAA64780.1| (U21975) NADH dehydrogenase F [Zoysia matrella] 184 2e-45
gb|AAD26215.1| (AF117398) NADH dehydrogenase [Chrysopogon fulvus] 184 2e-45
gb|AAD26216.1| (AF117399) NADH dehydrogenase [Chrysopogon gryllus] 184 2e-45
gb|AAF08181.1| (AF130225) NADH dehydrogenase subunit F [Rhamnus ... 184 2e-45
gb|AAD26236.1| (AF117419) NADH dehydrogenase [Rattraya petiolata] 184 2e-45
sp|Q33066|NU5C_SORBI NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5, ... 184 2e-45
gi|11467868 subunit 5 of NADH-plastoquinoneoxidoreductase [Nephr... 184 2e-45
gb|AAF79002.1| (L75909) NADH dehydrogenase F [Vriesea triligulata] 184 2e-45
gb|AAF79008.1| (L75936) NADH dehydrogenase F [Tillandsia hamaleana] 184 2e-45
gb|AAF79012.1| (L75879) NADH dehydrogenase F [Tillandsia dodsonii] 184 2e-45
gb|AAD26248.1| (AF117431) NADH dehydrogenase [Sorghum timorense] 184 2e-45
gb|AAF08133.1| (AF130177) NADH dehydrogenase subunit F [Ipomoea ... 184 2e-45
pir||T12213 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 184 2e-45
gb|AAF08142.1| (AF130186) NADH dehydrogenase subunit F [Cyananth... 184 2e-45
gb|AAA64201.1| (U21997) NADH dehydrogenase F [Phragmites australis] 184 2e-45
gb|AAF08861.1|AF194829_1 (AF194829) NADH dehydrogenase [Tetragon... 184 2e-45
gb|AAF08176.1| (AF130220) NADH dehydrogenase subunit F [Cornus f... 184 2e-45
sp|Q32880|NU5C_POAPR NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5, ... 184 2e-45
gb|AAF08887.1|AF194856_1 (AF194856) NADH dehydrogenase [Claytoni... 184 2e-45
gb|AAF25182.1|AF182354_1 (AF182354) NADH dehydrogenase [Pariana ... 184 2e-45
emb|CAB65660.1| (AJ236243) NADH dehydrogenase subunit F [Convolv... 184 2e-45
gb|AAA64199.1| (U21995) NADH dehydrogenase F [Molinia caerulea] 184 2e-45
gb|AAA64841.1| (U21976) NADH dehydrogenase F [Setaria viridis] 183 3e-45
pir||T12173 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 183 3e-45
gb|AAD26217.1| (AF117400) NADH dehydrogenase [Cleistachne sorgho... 183 3e-45
pir||T13773 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 183 3e-45
gb|AAF08165.1| (AF130209) NADH dehydrogenase subunit F [Rhododen... 183 3e-45
gb|AAD52748.1|AF123690_1 (AF123690) NADH dehydrogenase [Probosci... 183 3e-45
gb|AAF79011.1| (L75880) NADH dehydrogenase F [Tillandsia fraseri] 183 3e-45
gb|AAA84712.2| (L36419) NADH dehydrogenase subunit [Veronica per... 183 3e-45
gb|AAG12210.1| (AF163444) NADH dehydrogenase subunit F [Carex me... 183 3e-45
pir||T13056 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 183 4e-45
gb|AAB37132.1| (U78680) NADH dehydrogenase [Caryopteris bicolor] 183 4e-45
pir||T13764 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 183 4e-45
emb|CAB65355.1| (AJ236267) NADH dehydrogenase subunit F [Probosc... 183 4e-45
gb|AAF08891.1|AF194860_1 (AF194860) NADH dehydrogenase [Cistanth... 183 4e-45
gb|AAF25171.1|AF182343_1 (AF182343) NADH dehydrogenase [Sucrea m... 183 4e-45
gi|11466446 subunit 5 of NADH-plastoquinoneoxidoreductase [Mesos... 183 4e-45
pir||T12659 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 183 4e-45
gb|AAF25173.1|AF182345_1 (AF182345) NADH dehydrogenase [Puelia o... 183 4e-45
pir||T13503 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 183 5e-45
pir||T12696 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 183 5e-45
gb|AAB37165.1| (U78684) NADH dehydrogenase [Teucridium parvifolium] 183 5e-45
gb|AAB48066.1| (L36393) NADH dehydrogenase subunit [Borago offic... 183 5e-45
pir||G75113 NADH dehydrogenase I chain M PAB0490 - Pyrococcus ab... 183 5e-45
gb|AAD52743.1|AF123685_1 (AF123685) NADH dehydrogenase [Leucophy... 183 5e-45
pir||F71019 hypothetical protein PH1451 - Pyrococcus horikoshii ... 183 5e-45
gb|AAF08857.1|AF194825_1 (AF194825) NADH dehydrogenase [Bougainv... 183 5e-45
gb|AAF08893.1|AF194862_1 (AF194862) NADH dehydrogenase [Talinell... 183 5e-45
gb|AAF22404.1|AF047797_1 (AF047797) NADH dehydrogenase [Bourreri... 183 5e-45
emb|CAB64875.1| (AJ236256) NADH dehydrogenase subunit F [Couroup... 183 5e-45
gb|AAF78999.1| (L75912) NADH dehydrogenase F [Vriesea espinosae] 183 5e-45
pir||T13767 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 183 5e-45
gb|AAF78998.1| (L75913) NADH dehydrogenase F [Vriesea gladiolifl... 183 5e-45
gb|AAF79007.1| (L75937) NADH dehydrogenase F [Tillandsia secunda] 183 5e-45
gb|AAA64500.1| (U21846) NADH dehydrogenase F [Arundinaria gigantea] 182 7e-45
gb|AAA68607.1| (U27296) NADH dehydrogenase F [Chasmanthium laxum... 182 7e-45
gb|AAD26243.1| (AF117426) NADH dehydrogenase [Sorghum leiocladum] 182 7e-45
gb|AAF25170.1|AF182342_1 (AF182342) NADH dehydrogenase [Shibatae... 182 7e-45
gb|AAF37201.1| (AF191812) NADH dehydrogenase subunit F [Carex sc... 182 7e-45
gb|AAF25178.1|AF182350_1 (AF182350) NADH dehydrogenase [Otatea a... 182 7e-45
gb|AAD26249.1| (AF117432) NADH dehydrogenase [Sorghum versicolor] 182 7e-45
gb|AAF25176.1|AF182348_1 (AF182348) NADH dehydrogenase [Melocann... 182 7e-45
emb|CAB85675.1| (AJ238344) NADH dehydrogenase [Quintinia verdonii] 182 7e-45
gb|AAF79015.1| (L75935) NADH dehydrogenase F [Guzmania sanguinea] 182 7e-45
gb|AAF79000.1| (L75911) NADH dehydrogenase F [Vriesea vittata] 182 7e-45
gb|AAA64702.1| (U21984) NADH dehydrogenase F [Thysanolaena maxima] 182 7e-45
gi|11497577 NADH dehydrogenase ND5 subunit [Spinacia oleracea] >... 182 7e-45
gb|AAF79016.1| (L75934) NADH dehydrogenase F [Guzmania rhonhofiana] 182 7e-45
gb|AAF79018.1| (L75932) NADH dehydrogenase F [Guzmania nicarague... 182 7e-45
pir||T13568 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 182 9e-45
pir||T13409 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 182 9e-45
gb|AAA64705.1| (U21987) NADH dehydrogenase F [Zeugites pittieri] 182 9e-45
pir||A70414 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 182 9e-45
gb|AAD26214.1| (AF117397) NADH dehydrogenase [Chionachne koenigii] 182 9e-45
emb|CAB64687.1| (AJ236238) NADH dehydrogenase subunit F [Actinid... 182 9e-45
gb|AAF25180.1|AF182352_1 (AF182352) NADH dehydrogenase [Nastus e... 182 9e-45
gb|AAD52737.1|AF123679_1 (AF123679) NADH dehydrogenase [Calceola... 182 9e-45
gb|AAA64703.1| (U21985) NADH dehydrogenase F [Zea mays] 182 9e-45
gb|AAF25172.1|AF182344_1 (AF182344) NADH dehydrogenase [Sasa var... 182 9e-45
gb|AAF25174.1|AF182346_1 (AF182346) NADH dehydrogenase [Yushania... 182 9e-45
gb|AAG12233.1| (AF163467) NADH dehydrogenase subunit F [Uncinia ... 182 9e-45
gb|AAG26157.1| (AF123809) NADH dehydrogenase subunit F [Lactoris... 182 9e-45
pir||D83315 NADH dehydrogenase I chain L PA2647 [imported] - Pse... 182 1e-44
emb|CAC17760.1| (AJ400890) NADH dehydrogenase subunit F [Grubbia... 182 1e-44
pir||T12624 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 182 1e-44
pir||T12220 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 182 1e-44
gb|AAF25183.1|AF182355_1 (AF182355) NADH dehydrogenase [Neurolep... 182 1e-44
gb|AAF27219.1|AF111739_1 (AF111739) NADH dehydrogenase [Huberode... 182 1e-44
gb|AAF37198.1| (AF191809) NADH dehydrogenase subunit F [Carex do... 182 1e-44
sp|P31971|NU5C_SYNP2 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5 >... 181 2e-44
pir||T13505 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 181 2e-44
gb|AAA64770.1| (U21965) NADH dehydrogenase F [Streptogyna americ... 181 2e-44
pir||T13696 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 181 2e-44
pir||T13282 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 181 2e-44
gb|AAD26234.1| (AF117417) NADH dehydrogenase [Miscanthus japonicus] 181 2e-44
gb|AAF27233.1|AF111754_1 (AF111754) NADH dehydrogenase [Hildegar... 181 2e-44
pir||H82822 NADH-ubiquinone oxidoreductase, NQO14 subunit XF0318... 181 2e-44
gb|AAA64202.1| (U21998) NADH dehydrogenase F [Arundo donax] 181 2e-44
pir||T13249 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 181 2e-44
pir||T12665 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 181 2e-44
pir||T12751 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 181 2e-44
pir||T12752 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 181 2e-44
gb|AAF25175.1|AF182347_1 (AF182347) NADH dehydrogenase [Alvimia ... 181 2e-44
gb|AAF27211.1|AF111731_1 (AF111731) NADH dehydrogenase [Ceiba ro... 181 2e-44
gb|AAF44115.1| (AF230256) NADH dehydrogenase [Triplochiton zambe... 181 2e-44
gb|AAG12218.1| (AF163452) NADH dehydrogenase subunit F [Carex pa... 181 2e-44
gb|AAA64206.1| (U22002) NADH dehydrogenase F [Guadua paniculata] 180 3e-44
pir||T13234 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 180 3e-44
gb|AAD52742.1|AF123684_1 (AF123684) NADH dehydrogenase [Jovellan... 180 3e-44
gb|AAG34770.1| (AF207968) NADH dehydrogenase subunit F [Cobaea s... 180 3e-44
gb|AAA64772.1| (U21967) NADH dehydrogenase F [Bambusa stenostachya] 180 3e-44
pir||T12748 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 180 3e-44
gb|AAD26247.1| (AF117430) NADH dehydrogenase [Sorghum stipoideum] 180 3e-44
gb|AAF25177.1|AF182349_1 (AF182349) NADH dehydrogenase [Rhipidoc... 180 3e-44
gb|AAF25179.1|AF182351_1 (AF182351) NADH dehydrogenase [Hickelia... 180 3e-44
gb|AAG12213.1| (AF163447) NADH dehydrogenase subunit F [Carex el... 180 3e-44
sp|Q32440|NU5C_HORVU NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5, ... 180 4e-44
gb|AAA64774.1| (U21969) NADH dehydrogenase F [Chimonobambusa mar... 180 4e-44
pir||T13587 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 180 4e-44
pir||T13670 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 180 4e-44
pir||B71640 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 180 4e-44
gb|AAF08888.1|AF194857_1 (AF194857) NADH dehydrogenase [Portulac... 180 4e-44
gb|AAF25181.1|AF182353_1 (AF182353) NADH dehydrogenase [Eremitis... 180 4e-44
gb|AAF44106.1| (AF230247) NADH dehydrogenase [Papuodendron lepid... 180 4e-44
emb|CAC03501.1| (AJ250389) NADH dehydrogenase subunit [Mohavea c... 180 4e-44
emb|CAC08259.1| (AL392146) NADH dehydrogenase subunit [Streptomy... 180 4e-44
pir||T13572 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 179 6e-44
gb|AAA64779.1| (U21974) NADH dehydrogenase F [Leersia virginica] 179 6e-44
pir||T13085 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 179 6e-44
pir||E71839 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 179 6e-44
gb|AAF37200.1| (AF191811) NADH dehydrogenase subunit F [Carex hu... 179 6e-44
emb|CAC14148.1| (AJ245399) putative NADH-ubiquinone oxidoreducta... 179 8e-44
pir||T13573 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 178 2e-43
sp|P77416|HYFD_ECOLI HYDROGENASE-4 COMPONENT D >gi|7466377|pir||... 177 3e-43
gb|AAF08127.1| (AF130165) NADH dehydrogenase subunit F [Araujia ... 177 3e-43
pir||G64678 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 176 4e-43
emb|CAB65913.1| (AJ236266) NADH dehydrogenase subunit F [Nyssa o... 176 4e-43
emb|CAB59312.1| (AJ236295) NADH dehydrogenase subunit F [Erithal... 176 5e-43
gb|AAF08182.1| (AF130226) NADH dehydrogenase subunit F [Quercus ... 176 5e-43
pir||C83514 probable NADH dehydrogenase PA1054 [imported] - Pseu... 176 5e-43
emb|CAB59319.1| (AJ236298) NADH dehydrogenase subunit F [Hillia ... 175 9e-43
gb|AAG26147.1| (AF123799) NADH dehydrogenase subunit F [Acorus c... 175 9e-43
pir||T12625 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 175 1e-42
emb|CAB51628.2| (AJ245399) putative NADH-ubiquinone oxidoreducta... 175 1e-42
emb|CAB59299.1| (AJ236283) NADH dehydrogenase subunit F [Alseis ... 175 1e-42
pir||T13778 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 174 2e-42
sp|P77437|HYFF_ECOLI HYDROGENASE-4 COMPONENT F >gi|7466379|pir||... 174 2e-42
pir||T13370 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 174 3e-42
pir||T13685 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 174 3e-42
emb|CAB52783.1| (AJ243656) transmembrane protein 53.3 kDa (conse... 174 3e-42
emb|CAB59332.1| (AJ236308) NADH dehydrogenase subunit F [Rogiera... 173 3e-42
emb|CAB59313.1| (AJ236294) NADH dehydrogenase subunit F [Emmenop... 173 4e-42
emb|CAB59321.1| (AJ236301) NADH dehydrogenase subunit F [Mussaen... 173 4e-42
pir||T13814 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 173 6e-42
emb|CAB59328.1| (AJ236303) NADH dehydrogenase subunit F [Pentago... 172 8e-42
emb|CAB59331.1| (AJ236310) NADH dehydrogenase subunit F [Rustia ... 172 8e-42
emb|CAB59337.1| (AJ236312) NADH dehydrogenase subunit F [Simira ... 172 8e-42
emb|CAB59314.1| (AJ236297) NADH dehydrogenase subunit F [Guettar... 171 1e-41
emb|CAB65032.1| (AJ235844) NADH dehydrogenase, putative [Gardeni... 171 1e-41
sp|P33607|NUOL_ECOLI NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINO... 171 2e-41
sp|Q9XAR5|NUOL_STRCO NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINO... 171 2e-41
emb|CAB59304.1| (AJ236291) NADH dehydrogenase subunit F [Condami... 171 2e-41
gb|AAF08129.1| (AF130167) NADH dehydrogenase subunit F [Cryptost... 170 3e-41
emb|CAB59303.1| (AJ236285) NADH dehydrogenase subunit F [Calycop... 169 5e-41
gi|11466469 NADH dehydrogenase subunit 5 [Chrysodidymus synuroid... 169 5e-41
pir||S08621 probable hydrogenase 3 protein 3 - Escherichia coli ... 169 7e-41
sp|P16429|HYCC_ECOLI FORMATE HYDROGENLYASE SUBUNIT 3 (FHL SUBUNI... 169 7e-41
gb|AAA69233.1| (U29579) formate hydrogenlyase subunit 3 [Escheri... 169 9e-41
emb|CAB65393.1| (AJ235845) NADH dehydrogenase, putative [Rondele... 169 9e-41
gi|11466663 NADH dehydrogenase subunit 5 [Malawimonas jakobiform... 169 9e-41
gi|11465866 NADH dehydrogenase subunit 5 [Ochromonas danica] >gi... 169 9e-41
pir||E69033 NADH dehydrogenase I, subunit N - Methanobacterium t... 168 1e-40
pir||T12129 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 168 1e-40
gb|AAF08190.1| (AF130234) NADH dehydrogenase subunit F [Lamproca... 168 1e-40
sp|P50973|NUON_RHOCA NADH DEHYDROGENASE I CHAIN N (NADH-UBIQUINO... 168 1e-40
emb|CAB59302.1| (AJ236290) NADH dehydrogenase subunit F [Coffea ... 168 1e-40
emb|CAB59309.1| (AJ236288) NADH dehydrogenase subunit F [Cephala... 168 1e-40
gb|AAB94516.1| (AF013999) NADH dehydrogenase subunit F [Hydrolea... 168 2e-40
pir||T17469 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 168 2e-40
pir||T12158 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 168 2e-40
pir||T14236 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 167 3e-40
pir||D70420 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 167 3e-40
pir||T14233 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 167 3e-40
emb|CAA76117.1| (Y16191) echA [Methanosarcina barkeri] 167 3e-40
pir||T13785 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 167 3e-40
pir||S38321 NADH dehydrogenase I chain nuoL - Escherichia coli >... 165 1e-39
pir||B70414 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 165 1e-39
gi|11497458 NADH deydrogenase (ubiquinone), subunit 5 [Protothec... 165 1e-39
pir||G81796 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N... 165 1e-39
pir||B72619 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 164 2e-39
pir||F81220 NADH dehydrogenase I, N chain NMB0259 [imported] - N... 164 2e-39
pir||H81796 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain M... 164 2e-39
gi|7525007 NADH dehydrogenase subunit 5 [Dictyostelium discoideu... 164 2e-39
gb|AAF72053.1|AF204057_8 (AF204057) NADH dehydrogenase subunit 5... 164 2e-39
sp|O86350|NUOL_MYCTU NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINO... 163 4e-39
pir||E81220 NADH dehydrogenase I, M chain NMB0258 [imported] - N... 163 4e-39
pir||E83514 probable NADH dehydrogenase PA1056 [imported] - Pseu... 163 5e-39
sp|Q9PMA7|NUOL_CAMJE NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINO... 162 6e-39
gi|11467931 NADH dehydrogenase subunit 5 [Scenedesmus obliquus] ... 162 6e-39
sp|Q10880|Y051_MYCTU HYPOTHETICAL 65.6 KD PROTEIN RV0083 >gi|744... 162 1e-38
gi|11467867 subunit 4 of NADH-plastoquinoneoxidoreductase [Nephr... 161 2e-38
emb|CAC12088.1| (AL445066) NADH dehydrogenase, chain N related p... 161 2e-38
gi|11466676 ndh2 [Marchantia polymorpha] >gi|128656|sp|P06257|NU... 161 2e-38
pir||F72619 probable NADH dehydrogenase (ubiquinone) chain 13 AP... 161 2e-38
sp|Q37680|NU5M_WHEAT NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|... 160 3e-38
gb|AAF65740.1|AF228525_10 (AF228525) F420H2 dehydrogenase subuni... 160 3e-38
pir||JQ1447 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 160 4e-38
sp|P10330|NU5M_OENBE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|... 159 7e-38
emb|CAC14149.1| (AJ245399) putative NADH-ubiquinone oxidoreducta... 159 7e-38
gi|11466311 NADH dehydrogenase subunit 5 [Cafeteria roenbergensi... 159 1e-37
gb|AAG19146.1| (AE005012) F420H2:quinone oxidoreductase chain M;... 158 1e-37
gb|AAF03175.1|AF110138_7 (AF110138) NADH dehydrogenase subunit 5... 158 1e-37
pir||T12400 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 158 2e-37
gi|6137788 NADH dehydrogenase subunit 5 [Metridium senile] >gi|3... 157 3e-37
gi|9695393 NADH dehydrogenase subunit 5 [Phytophthora infestans]... 157 4e-37
gb|AAD50781.1| (AF164777) NADH dehydrogenase F [Guaduella marant... 157 4e-37
emb|CAB89015.1| (AL353870) probable NADH dehydrogenase I complex... 157 4e-37
pir||T03467 NADH dehydrogenase (ubiquinone) chain 5 homolog - Rh... 156 5e-37
pir||E83315 NADH dehydrogenase I chain M PA2648 [imported] - Pse... 156 5e-37
emb|CAC14150.1| (AJ245399) putative NADH-ubiquinone oxidoreducta... 156 5e-37
pir||S77331 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 156 6e-37
gi|11466551 NADH dehydrogenase, subunit 5 [Reclinomonas american... 155 8e-37
sp|P31978|NUOM_ECOLI NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINO... 155 1e-36
gi|11466428 subunit 4 of NADH-plastoquinoneoxidoreductase [Mesos... 155 1e-36
pir||G82822 NADH-ubiquinone oxidoreductase, NQO13 subunit XF0317... 155 1e-36
sp|Q9ZCG0|NUOM_RICPR NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINO... 154 2e-36
pir||S14115 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 154 2e-36
pir||A48643 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 154 2e-36
gi|9838484 NADH dehydrogenase subunit 5 [Beta vulgaris] >gi|9087... 154 2e-36
pir||S74687 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 153 4e-36
pir||T34612 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 153 4e-36
sp|P57262|NUOL_BUCAI NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINO... 153 4e-36
gi|11466188 NADH dehydrogenase subunit 5 [Naegleria gruberi] >gi... 153 4e-36
gb|AAK40663.1| NADH dehydrogenase subunit L (NuoL) [Sulfolobus ... 152 7e-36
gi|11497484 NADH dehydrogenase (ubiquinone), subunit 2 [Protothe... 152 9e-36
pir||G75389 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2... 152 9e-36
gi|11467099 nad5 [Marchantia polymorpha] >gi|464247|sp|P26849|NU... 152 1e-35
gb|AAG23669.1|AF288091_14 (AF288091) NADH dehydrogenase subunit ... 151 2e-35
gi|9653251 NADH dehydrogenase subunit 5 [Chondrus crispus] >gi|1... 151 2e-35
pir||S62707 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 150 3e-35
sp|P50974|NUOM_RHOCA NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINO... 150 3e-35
pir||T12297 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 150 3e-35
gi|11465636 NADH dehydrogenase subunit 5 [Porphyra purpurea] >gi... 150 5e-35
pir||S75961 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 149 8e-35
pir||T34611 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 2... 148 1e-34
sp|P56911|NUN2_RHIME NADH DEHYDROGENASE I CHAIN N 2 (NADH-UBIQUI... 148 1e-34
gi|11466579 NADH dehydrogenase subunit 5 [Rhodomonas salina] >gi... 148 1e-34
sp|O53308|NUON_MYCTU NADH DEHYDROGENASE I CHAIN N (NADH-UBIQUINO... 148 1e-34
gi|11499413 F420H2:quinone oxidoreductase, 53.9 kDa subunit (nuo... 147 2e-34
gb|AAK40664.1| NADH dehydrogenase subunit N (NuoN) [Sulfolobus ... 147 3e-34
sp|Q9JX92|NUOL_NEIMA NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINO... 146 5e-34
gi|6137793 NADH dehydrogenase subunit 4 [Metridium senile] >gi|3... 146 7e-34
sp|Q9K1B0|NUOL_NEIMB NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINO... 146 7e-34
pir||DNMUU5 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 145 9e-34
gi|5835139 NADH dehydrogenase subunit 5 [Pan paniscus] >gi|25069... 145 9e-34
sp|P29388|NU5M_ARATH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|... 145 9e-34
gb|AAG19078.1| (AE005006) Vng0560c [Halobacterium sp. NRC-1] 145 9e-34
pir||B82495 probable NADH dehydrogenase VCA0157 [imported] - Vib... 144 2e-33
gi|11467100 nad4 [Marchantia polymorpha] >gi|464242|sp|P26848|NU... 143 6e-33
sp|P29925|NQOD_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 13 (NA... 141 2e-32
pir||S38322 NADH dehydrogenase I chain nuoM - Escherichia coli (... 139 7e-32
gi|11466552 NADH dehydrogenase, subunit 4 [Reclinomonas american... 139 7e-32
gb|AAD52918.1|AF152244_5 (AF152244) NADH dehydrogenase subunit 4... 138 2e-31
gi|11466666 NADH dehydrogenase subunit 4 [Malawimonas jakobiform... 138 2e-31
sp|P50368|NU5M_SCHCO NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|... 138 2e-31
sp|P32421|NU4C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 4 >... 136 5e-31
pir||C70420 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 136 5e-31
gi|11466752 ndh4 [Marchantia polymorpha] >gi|128731|sp|P06263|NU... 136 8e-31
pir||S75962 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 135 1e-30
gb|AAF63427.1|AF150756_9 (AF150756) NADH dehydrogenase subunit 5... 135 1e-30
gi|5835926 NADH dehydrogenase subunit 5 [Anopheles quadrimaculat... 134 2e-30
prf||2015259H NADH dehydrogenase:SUBUNIT=5 [Anopheles quadrimacu... 134 2e-30
pir||A72281 hypothetical protein TM1211 - Thermotoga maritima (s... 134 2e-30
sp|P50367|NU5M_RHIST NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|... 134 3e-30
gi|5835342 NADH dehydrogenase subunit 5 [Rhinoceros unicornis] >... 133 4e-30
gi|9838467 NADH dehydrogenase subunit 4 [Beta vulgaris] >gi|9087... 133 4e-30
emb|CAA63737.1| (X93358) phaD [Sinorhizobium meliloti] 132 7e-30
gi|5835775 NADH dehydrogenase subunit 5 [Orycteropus afer] >gi|7... 132 7e-30
prf||2204231G NADH ubiquinone oxidoreductase [Rhodobacter capsul... 132 1e-29
sp|P50939|NUOL_RHOCA NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINO... 132 1e-29
gb|AAF78607.1|AF260826_6 (AF260826) NADH subunit 5 [Cochliomyia ... 132 1e-29
sp|P57263|NUOM_BUCAI NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINO... 132 1e-29
gi|11497457 NADH dehydrogenase (ubiquinone), subunit 4 [Protothe... 131 2e-29
gi|5835098 NADH dehydrogenase subunit 5 [Katharina tunicata] >gi... 131 2e-29
gi|5835440 NADH dehydrogenase subunit 5 [Dasypus novemcinctus] >... 131 2e-29
pir||S41639 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 131 3e-29
pir||B24707 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 131 3e-29
prf||1204259B URF5 [Chlamydomonas reinhardtii] 131 3e-29
gi|11467091 NADH dehydrogenase subunit 5 [Chlamydomonas reinhard... 131 3e-29
gi|5835259 NADH dehydrogenase subunit 5 [Locusta migratoria] >gi... 131 3e-29
emb|CAA38641.1| (X54860) mitochondrial NADH dehydrogenase subun... 131 3e-29
sp|Q36428|NU5M_LOCMI NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 131 3e-29
pir||T12401 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 130 5e-29
gi|7525085 NADH dehydrogenase ND4 [Arabidopsis thaliana] >gi|668... 129 8e-29
gi|11466208 NADH dehydrogenase subunit 4 [Naegleria gruberi] >gi... 129 1e-28
sp|O03060|NU4C_HORVU NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 4, ... 128 1e-28
gi|5835884 NADH dehydrogenase subunit 5 [Ceratitis capitata] >gi... 127 2e-28
gi|5834919 NADH dehydrogenase subunit 5 [Anopheles gambiae] >gi|... 127 3e-28
gb|AAF72115.1|AF216203_7 (AF216203) NADH dehydrogenase subunit 5... 126 7e-28
pir||F70749 probable hycQ protein - Mycobacterium tuberculosis (... 125 9e-28
pir||C70414 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 125 2e-27
pir||QXZM4 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 ... 124 2e-27
sp|P06262|NU4C_TOBAC NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 4, ... 124 3e-27
gi|7374125 NADH dehydrogenase subunit 5 [Penaeus monodon] >gi|72... 123 3e-27
pir||C72295 hypothetical protein TM1105 - Thermotoga maritima (s... 123 4e-27
gi|11467255 NADH dehydrogenase ND4 [Zea mays] >gi|1171814|sp|P11... 123 6e-27
emb|CAA09817.1| (AJ011848) ndhD gene product [Hordeum vulgare] 123 6e-27
gi|11465928 NADH dehydrogenase subunit 4 [Pedinomonas minor] >gi... 123 6e-27
pir||DENTN4 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 122 8e-27
gi|11466015 NADH dehydrogenase ND4 subunit [Nicotiana tabacum] >... 122 8e-27
gi|5835802 NADH dehydrogenase subunit 5 [Erinaceus europaeus] 122 8e-27
pir||S75340 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 120 3e-26
gi|5835746 NADH dehydrogenase subunit 5 [Chrysemys picta] >gi|75... 118 2e-25
gb|AAG23678.1|AF288091_23 (AF288091) NADH dehydrogenase subunit ... 118 2e-25
sp|O53307|NUOM_MYCTU NADH DEHYDROGENASE I CHAIN M (NADH-UBIQUINO... 117 3e-25
gi|8572564 NADH dehydrogenase subunit 5 [Bombyx mori] >gi|816361... 115 1e-24
gi|6691418 NADH dehydrogenase subunit 5 [Terebratulina retusa] >... 113 4e-24
pir||T14239 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 111 2e-23
gi|11466914 NADH-ubiquinone oxidoreductase subunit 4 [Podospora ... 111 3e-23
gi|11467925 NADH dehydrogenase subunit 4 [Scenedesmus obliquus] ... 109 6e-23
gi|11182469 NADH dehydrogenase subuint 5 [Triatoma dimidiata] >g... 108 2e-22
gi|5835703 NADH dehydrogenase subunit 5 [Rhipicephalus sanguineu... 107 4e-22
pir||H75389 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 103 4e-21
gi|8404660 NADH dehydrogenase subunit 5 [Laqueus rubellus] >gi|7... 102 7e-21
sp|Q56228|NQOD_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 13 (NA... 102 1e-20
pir||T13819 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 101 3e-20
emb|CAA23995.1| (V00650) URF 4 [Emericella nidulans] 100 5e-20
sp|P03913|NU4M_ASPAM NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 >gi|... 98 3e-19
gi|5834894 NADH dehydrogenase subunit 5 [Caenorhabditis elegans]... 96 7e-19
dbj|BAA87027.1| (AB027599) NADH dehydrogenase subunit 5 [Ornitho... 86 8e-16
dbj|BAA87028.1| (AB027600) NADH dehydrogenase subunit 5 [Ornitho... 86 8e-16
dbj|BAA87025.1| (AB027597) NADH dehydrogenase subunit 5 [Ornitho... 85 1e-15
dbj|BAA87023.2| (AB027595) NADH dehydrogenase subunit 5 [Ornitho... 85 2e-15
dbj|BAA87018.1| (AB027590) NADH dehydrogenase subunit 5 [Pachlio... 84 3e-15
dbj|BAA87008.2| (AB027580) NADH dehydrogenase subunit 5 [Parides... 84 3e-15
dbj|BAA87011.1| (AB027583) NADH dehydrogenase subunit 5 [Byasa a... 84 4e-15
dbj|BAA87021.1| (AB027593) NADH dehydrogenase subunit 5 [Troides... 83 5e-15
dbj|BAA87031.1| (AB027603) NADH dehydrogenase subunit 5 [Ornitho... 83 5e-15
dbj|BAA28185.1| (AB013145) NADH dehydrogenase subunit 5 [Byasa a... 83 7e-15
pir||T11687 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 83 7e-15
dbj|BAA87024.1| (AB027596) NADH dehydrogenase subunit 5 [Ornitho... 83 9e-15
pir||T11691 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 82 1e-14
dbj|BAA87022.1| (AB027594) NADH dehydrogenase subunit 5 [Troides... 82 1e-14
pir||T12379 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 82 2e-14
pir||T12448 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 82 2e-14
dbj|BAA87007.2| (AB027579) NADH dehydrogenase subunit 5 [Parides... 82 2e-14
dbj|BAA87006.1| (AB027578) NADH dehydrogenase subunit 5 [Parides... 81 3e-14
dbj|BAA87020.2| (AB027592) NADH dehydrogenase subunit 5 [Troides... 81 3e-14
dbj|BAA87029.1| (AB027601) NADH dehydrogenase subunit 5 [Ornitho... 81 4e-14
pir||T14246 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4... 80 5e-14
dbj|BAA87014.1| (AB027586) NADH dehydrogenase subunit 5 [Atropha... 80 5e-14
dbj|BAA87030.1| (AB027602) NADH dehydrogenase subunit 5 [Ornitho... 80 8e-14
dbj|BAA87015.1| (AB027587) NADH dehydrogenase subunit 5 [Losaria... 79 1e-13
dbj|BAA87026.1| (AB027598) NADH dehydrogenase subunit 5 [Ornitho... 79 1e-13
pir||T11693 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 78 2e-13
dbj|BAA87009.1| (AB027581) NADH dehydrogenase subunit 5 [Parides... 78 2e-13
pir||T11690 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 78 3e-13
pir||T11609 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 77 4e-13
pir||T11724 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 77 4e-13
pir||T11605 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 77 5e-13
pir||T11704 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 77 5e-13
pir||T11731 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 77 5e-13
gb|AAF06654.1|AF190045_1 (AF190045) NADH dehydrogenase subunit 5... 77 5e-13
pir||T11696 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 76 7e-13
pir||T11697 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 76 7e-13
pir||T11698 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 76 7e-13
dbj|BAA77577.2| (AB026727) NADH dehydrogenase subunit 5 [Bhutani... 76 7e-13
dbj|BAA87004.1| (AB027576) NADH dehydrogenase subunit 5 [Euryade... 76 7e-13
dbj|BAA87032.1| (AB027604) NADH dehydrogenase subunit 5 [Papilio... 76 7e-13
pir||T11689 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 76 9e-13
pir||T11694 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 76 9e-13
pir||T11702 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 76 9e-13
dbj|BAA77578.2| (AB026728) NADH dehydrogenase subunit 5 [Bhutani... 76 9e-13
dbj|BAA87003.1| (AB027575) NADH dehydrogenase subunit 5 [Battus ... 76 9e-13
pir||T13904 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 76 1e-12
pir||T11723 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 76 1e-12
pir||T11726 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 75 2e-12
pir||T11727 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 75 2e-12
pir||T11728 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 75 2e-12
dbj|BAA87033.2| (AB027605) NADH dehydrogenase subunit 5 [Delias ... 75 2e-12
pir||T12023 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 75 2e-12
pir||T11730 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 75 3e-12
pir||T11701 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 74 3e-12
gb|AAF06651.1|AF190042_1 (AF190042) NADH dehydrogenase subunit 5... 74 3e-12
gb|AAF06653.1|AF190044_1 (AF190044) NADH dehydrogenase subunit 5... 74 3e-12
dbj|BAA32448.2| (AB016828) NADH dehydrogenase subunit 5 [Luehdor... 74 5e-12
pir||T11692 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 73 6e-12
dbj|BAA84512.1| (AB031499) NADH dehydrogenase subunit 5 [Carabus... 73 8e-12
pir||T14008 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 73 1e-11
pir||T11699 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 72 1e-11
pir||T11700 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 72 1e-11
pir||T12029 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 72 1e-11
dbj|BAA84238.1| (AB031441) NADH dehydrogenase subunit 5 [Leptoca... 72 1e-11
dbj|BAA84271.1| (AB031474) NADH dehydrogenase subunit 5 [Leptoca... 72 1e-11
dbj|BAA84518.1| (AB031505) NADH dehydrogenase subunit 5 [Carabus... 72 1e-11
pir||T11598 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 72 2e-11
pir||T11600 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 72 2e-11
dbj|BAA82519.1| (AB029992) NADH dehydrogenase subunit 5 [Luehdor... 72 2e-11
dbj|BAA84231.1| (AB031434) NADH dehydrogenase subunit 5 [Leptoca... 72 2e-11
dbj|BAA84244.1| (AB031447) NADH dehydrogenase subunit 5 [Leptoca... 72 2e-11
dbj|BAA84247.1| (AB031450) NADH dehydrogenase subunit 5 [Leptoca... 72 2e-11
dbj|BAA84519.1| (AB031506) NADH dehydrogenase subunit 5 [Carabus... 72 2e-11
dbj|BAA32446.2| (AB016826) NADH dehydrogenase subunit 5 [Luehdor... 72 2e-11
dbj|BAA94633.1| (AB041074) NADH dehydrogenase subunit 5 [Carabus... 72 2e-11
dbj|BAA94634.1| (AB041075) NADH dehydrogenase subunit 5 [Carabus... 72 2e-11
pir||T14044 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 71 2e-11
pir||T14051 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 71 2e-11
dbj|BAA82520.1| (AB029993) NADH dehydrogenase subunit 5 [Luehdor... 71 2e-11
dbj|BAA84227.1| (AB031430) NADH dehydrogenase subunit 5 [Leptoca... 71 2e-11
dbj|BAA84270.1| (AB031473) NADH dehydrogenase subunit 5 [Leptoca... 71 2e-11
dbj|BAA32449.2| (AB016829) NADH dehydrogenase subunit 5 [Luehdor... 71 2e-11
dbj|BAB17692.1| (AB050672) NADH dehydrogenase subunit 5 [Carabus... 71 2e-11
pir||T14131 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 71 3e-11
pir||T11608 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 71 3e-11
pir||T11729 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 71 3e-11
pir||T12030 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 71 3e-11
pir||T12034 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 71 3e-11
dbj|BAA84242.1| (AB031445) NADH dehydrogenase subunit 5 [Leptoca... 71 3e-11
dbj|BAA84266.1| (AB031469) NADH dehydrogenase subunit 5 [Leptoca... 71 3e-11
gb|AAF61934.1|AF231687_1 (AF231687) NADH dehydrogenase subunit 5... 71 3e-11
dbj|BAA84260.2| (AB031463) NADH dehydrogenase subunit 5 [Leptoca... 71 3e-11
dbj|BAB11869.1| (AB047254) NADH dehydrogenase subunit 5 [Carabus... 71 3e-11
dbj|BAA74478.1| (AB022566) NADH dehydrogenase subunit 5 [Carabus... 71 4e-11
dbj|BAA84233.1| (AB031436) NADH dehydrogenase subunit 5 [Leptoca... 71 4e-11
dbj|BAA84234.1| (AB031437) NADH dehydrogenase subunit 5 [Leptoca... 71 4e-11
dbj|BAA84236.1| (AB031439) NADH dehydrogenase subunit 5 [Leptoca... 71 4e-11
gb|AAF06650.1|AF190041_1 (AF190041) NADH dehydrogenase subunit 5... 71 4e-11
gb|AAF06658.1|AF190049_1 (AF190049) NADH dehydrogenase subunit 5... 71 4e-11
pir||T14036 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5... 70 5e-11
dbj|BAA84256.1| (AB031459) NADH dehydrogenase subunit 5 [Leptoca... 70 5e-11
dbj|BAA84257.1| (AB031460) NADH dehydrogenase subunit 5 [Leptoca... 70 5e-11
gb|AAF06655.1|AF190046_1 (AF190046) NADH dehydrogenase subunit 5... 70 5e-11
gb|AAF06657.1|AF190048_1 (AF190048) NADH dehydrogenase subunit 5... 70 5e-11
gb|AAF61115.1|AF231700_1 (AF231700) NADH dehydrogenase subunit 5... 70 7e-11
>pir||F75115 co-induced hydrogenase related, chain M PAB1888 - Pyrococcus abyssi
(strain Orsay) >gi|5458150|emb|CAB49639.1| (AJ248285)
CO-induced hydrogenase related, subunit M [Pyrococcus
abyssi]
Length = 510
Score = 1008 bits (2577), Expect = 0.0
Identities = 510/510 (100%), Positives = 510/510 (100%)
Query: 1 MTWLPFIIIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREVWSGGTIVYA 60
MTWLPFIIIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREVWSGGTIVYA
Sbjct: 1 MTWLPFIIIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREVWSGGTIVYA 60
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL
Sbjct: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV
Sbjct: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
Query: 181 LLGIALLYGQYGTLTMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHP 240
LLGIALLYGQYGTLTMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHP
Sbjct: 181 LLGIALLYGQYGTLTMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHP 240
Query: 241 AAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAV 300
AAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAV
Sbjct: 241 AAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAV 300
Query: 301 VQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLV 360
VQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLV
Sbjct: 301 VQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLV 360
Query: 361 AGVVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSALFN 420
AGVVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSALFN
Sbjct: 361 AGVVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSALFN 420
Query: 421 PLLGAIAIIGTAFCTAAYVRVLFTFFGRPSEKVMKAKDPGATMLLPIFILVIAIIGMGLF 480
PLLGAIAIIGTAFCTAAYVRVLFTFFGRPSEKVMKAKDPGATMLLPIFILVIAIIGMGLF
Sbjct: 421 PLLGAIAIIGTAFCTAAYVRVLFTFFGRPSEKVMKAKDPGATMLLPIFILVIAIIGMGLF 480
Query: 481 PWQISDKFMVPAAKSLWDIMGYVISLMGGG 510
PWQISDKFMVPAAKSLWDIMGYVISLMGGG
Sbjct: 481 PWQISDKFMVPAAKSLWDIMGYVISLMGGG 510
>pir||B71017 hypothetical protein PH1431 - Pyrococcus horikoshii
>gi|3257855|dbj|BAA30538.1| (AP000006) 510aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 510
Score = 941 bits (2405), Expect = 0.0
Identities = 467/510 (91%), Positives = 496/510 (96%)
Query: 1 MTWLPFIIIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREVWSGGTIVYA 60
MTWLPFIIIIPLFGAFSMPIVSLLKGKAKEIWATIISF TL+VGI+VFREVW+ GTIVYA
Sbjct: 1 MTWLPFIIIIPLFGAFSMPIVSLLKGKAKEIWATIISFTTLMVGIQVFREVWNRGTIVYA 60
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
LGSETPFGKA+FPIRIVWEVDKFGAIMVLIIT VSFLA+LYS+EYMKHDTGLEKYYTLIL
Sbjct: 61 LGSETPFGKANFPIRIVWEVDKFGAIMVLIITLVSFLAVLYSIEYMKHDTGLEKYYTLIL 120
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFR+DTWE IEAGIKYMFVGSLASS V
Sbjct: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRNDTWEAIEAGIKYMFVGSLASSLV 180
Query: 181 LLGIALLYGQYGTLTMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHP 240
LLGIALLYGQYGTLTMGYLAVKMSENPTIVAKIAL+LFLGGLLFKSGA+PVHMWLADAHP
Sbjct: 181 LLGIALLYGQYGTLTMGYLAVKMSENPTIVAKIALSLFLGGLLFKSGASPVHMWLADAHP 240
Query: 241 AAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAV 300
AAPSSISAMLSGLVIK+GGIYAIARVVFSIF PAIN ATVGW++IIFACITLIVGNAMAV
Sbjct: 241 AAPSSISAMLSGLVIKVGGIYAIARVVFSIFLPAINLATVGWLVIIFACITLIVGNAMAV 300
Query: 301 VQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLV 360
VQEDMKRLLAYSSVGQIGYILLGLGIG+VAYGSK+GE+ALAGAIYH VNHA+MKALLFLV
Sbjct: 301 VQEDMKRLLAYSSVGQIGYILLGLGIGMVAYGSKIGELALAGAIYHIVNHAMMKALLFLV 360
Query: 361 AGVVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSALFN 420
AG VLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSALFN
Sbjct: 361 AGAVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSALFN 420
Query: 421 PLLGAIAIIGTAFCTAAYVRVLFTFFGRPSEKVMKAKDPGATMLLPIFILVIAIIGMGLF 480
P++G+IAIIGTAFCTAAYVRVLFTFFGRP+EKVM+AKDPGA ML+P+FILVIAII MG+F
Sbjct: 421 PIIGSIAIIGTAFCTAAYVRVLFTFFGRPNEKVMRAKDPGALMLIPMFILVIAIILMGIF 480
Query: 481 PWQISDKFMVPAAKSLWDIMGYVISLMGGG 510
PWQISDK M+PAA++LWDI YV++LMGGG
Sbjct: 481 PWQISDKIMIPAARNLWDITSYVMTLMGGG 510
>pir||F75059 NADH-dehydrogenase related PAB1402 - Pyrococcus abyssi (strain
Orsay) >gi|5458884|emb|CAB50371.1| (AJ248287)
NADH-dehydrogenase related [Pyrococcus abyssi]
Length = 499
Score = 326 bits (826), Expect = 5e-88
Identities = 188/509 (36%), Positives = 298/509 (57%), Gaps = 37/509 (7%)
Query: 9 IIPLFGAFSMPIVSLLKGKAKEI---WATIISFATLIVGIEVFREVWSGGT-IVYALGSE 64
IIPL AF++P+ S++ G ++I +A + + TLI ++F+ +S IVY
Sbjct: 9 IIPLVFAFALPLFSVVVGGNRKIIQAYALLGTGLTLISTFKLFQLTYSSSLPIVYT---- 64
Query: 65 TPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILEL 124
FGK PI IV+EVD+ +++ L+ + FL +YS Y++ + GLE YYTL L LE
Sbjct: 65 --FGKWRAPIGIVYEVDRLSSLIALVTAVLMFLIAIYSYRYLEREKGLEWYYTLYLGLES 122
Query: 125 GMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGI 184
G+LG+ +TGD FN +V +E+ SIA+YALV F D + + AG+KY +G++ ++ L +
Sbjct: 123 GLLGVLLTGDAFNLFVMIEVTSIAAYALVMFYRDRKDSVLAGLKYALIGAVGTTMYFLAL 182
Query: 185 ALLYGQYGTLTMGYLAVKM--SENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAA 242
+ YG +GT+ L+ K+ S N + + +AL L L K+ P H WL +AHPAA
Sbjct: 183 GVFYGTFGTVNFADLSEKLHSSGNVVLASSVALVLATWAFLIKATIFPNHFWLPEAHPAA 242
Query: 243 PSSISAMLSGLVIKIGGIYAIARVVFSIF----WPAINPATVGWI---IIIFACITLIVG 295
PS ISA+LSGLV+ + G+YA+ R +++++ W +GW+ III I+ I G
Sbjct: 243 PSPISAILSGLVVNV-GVYAMIRFLYTLYSGLSW------IIGWLSFAIIILGAISSIFG 295
Query: 296 NAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKA 355
M Q D+KRL+AYS++ +GY+L+ +G+G ++ L A++H +NHA+ KA
Sbjct: 296 ALMMNTQRDVKRLVAYSTIMHMGYLLMAVGVGT--------QLGLQAALFHLINHAIAKA 347
Query: 356 LLFLVAGVVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES 415
LLFL GV +H G+RN+++L+GL + MP TTF+ I ++VG+PPLN F SK L++ +
Sbjct: 348 LLFLAVGVFIHVAGSRNIDDLAGLGRKMPITTFSLAIATLSLVGIPPLNVFFSKLLLFNA 407
Query: 416 SALFNPLLGAIAIIGTAFCTAAYVRVLFT-FFGRPSEKVMKAKDPGATMLLPIFILVIAI 474
+ L + + + AY+RVL+T + G+P E + + +M+ IL +
Sbjct: 408 LLEKSFFLALVIAVTSVIALVAYMRVLYTLWLGKPREDLDVKESISMSMI--CLILALIC 465
Query: 475 IGMGLFPWQISDKFMVPAAKSLWDIMGYV 503
I +GL + +K + PA D YV
Sbjct: 466 IAIGLIAPIVLEKLINPAVIQAMDYETYV 494
>pir||F75113 NADH dehydrogenase I N chain PAB2416 - Pyrococcus abyssi (strain
Orsay) >gi|5458134|emb|CAB49623.1| (AJ248285) NADH
DEHYDROGENASE I N SUBUNIT [Pyrococcus abyssi]
Length = 493
Score = 267 bits (676), Expect = 2e-70
Identities = 174/510 (34%), Positives = 284/510 (55%), Gaps = 35/510 (6%)
Query: 7 IIIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREVWSGGT-IVYALGSET 65
+I +PL AF +P++ +K + +I+ + VF EV++ G I+ G
Sbjct: 8 LIALPLISAFFVPVLKRIKQSLIMPYLILITLIQTGIAGWVFYEVYTTGKPIIIMAGGWR 67
Query: 66 PFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELG 125
P P+ I + F A+ VLII VSF+ ++S++ +K + ++KY L L+L LG
Sbjct: 68 P------PVGINLYIGPFAALFVLIIAVVSFITAVFSVKAVKVEP-IDKYAMLFLLLMLG 120
Query: 126 MLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIA 185
G+ TGDIFN +VF+EI +I +YAL A+ + T E EA +KY+ +G + SSF L+G+A
Sbjct: 121 ATGMIATGDIFNLFVFMEITAITAYALTAY-NKTGEAAEASMKYIVLGGIGSSFFLIGVA 179
Query: 186 LLYGQYGTLTMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPSS 245
LLYG GTL M +LA + IVA++ LAL + GL ++ P++ W DA+ AAP
Sbjct: 180 LLYGATGTLNMAHLAELSTSINPIVAQVGLALVIFGLAVEAELFPLNAWAPDAYQAAPHP 239
Query: 246 ISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQEDM 305
I+ M S V+K G+YA+AR+++ + A ++V +++I A +T+I A+ Q D+
Sbjct: 240 ITVMFSAFVVK-AGLYAMARILY-LLQKANGWSSVLRLVLIMATLTVIFAELSALRQRDV 297
Query: 306 KRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVVL 365
KR++AYSS+GQIG I L +G A + ++H +NHA++KA++FL G V
Sbjct: 298 KRMIAYSSIGQIGLIALAFSLGTQA--------GVDAGVFHMLNHAIVKAMMFLGVGYVG 349
Query: 366 HELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSALFNPLLGA 425
LG L + GL K MP T A IGA + VG+P N F SK+ I ++ + A
Sbjct: 350 ITLGGTELEKFEGLGKRMPLTALALTIGAVSTVGVPLFNVFWSKFRIIVATLQAGFIWPA 409
Query: 426 IAIIGTAFCTAA-YVRVLFT-FFGRPSEKVMKAKDPGATMLLPIFILVIAIIGMGLFP-- 481
I ++ + A Y R++ T +F E+V + +++ + +L + ++ +G++P
Sbjct: 410 ILVLFASMVEAVYYFRLVHTMWFSGSGERVKE-----GWIVIFLLLLAVLVVAIGIYPTP 464
Query: 482 -WQISDKFMVPAAKSLWDIMGYV--ISLMG 508
W+I + A ++ + YV + LMG
Sbjct: 465 AWEIVKR----AGSDIFAVANYVKNVPLMG 490
>pir||G71019 hypothetical protein PH1452 - Pyrococcus horikoshii
>gi|3257876|dbj|BAA30559.1| (AP000006) 495aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 495
Score = 257 bits (651), Expect = 2e-67
Identities = 171/516 (33%), Positives = 282/516 (54%), Gaps = 48/516 (9%)
Query: 7 IIIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREVWSGGT--IVYALGSE 64
+I +PL AF +P++ +K + T+I+ + VF EV++ G ++YA G
Sbjct: 8 LIALPLISAFFVPVLKQIKKSLIFPYLTLITLLQTGIAGWVFYEVYTTGKPILIYAGGWR 67
Query: 65 TPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILEL 124
P G I + F A+ +LII VSFL L+S+ +K + ++KY L L+L L
Sbjct: 68 PPVG-------INLYIGPFAALFILIIAIVSFLTSLFSMRMVKVEP-IDKYAMLFLLLML 119
Query: 125 GMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGI 184
G G+ TGDIFN +VF+EI +I +YAL A+ + T E EA +KYM +G + SSF L+G+
Sbjct: 120 GATGMIATGDIFNLFVFMEITAITAYALTAY-NKTGEAAEASMKYMILGGIGSSFFLIGV 178
Query: 185 ALLYGQYGTLTMGYLAVKMSENPT--IVAKIALALFLGGLLFKSGAAPVHMWLADAHPAA 242
AL+YG GTL M LA S +VA++ L+L + GL ++ P++ W DA+ AA
Sbjct: 179 ALIYGVTGTLNMAQLAEFASAGKIMPVVAQVGLSLIIFGLAVEAELFPLNAWAPDAYQAA 238
Query: 243 PSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGW-----IIIIFACITLIVGNA 297
P I+ M S V+K G+YA+AR+++ + +N GW +++I A +T+I
Sbjct: 239 PHPITVMFSAFVVK-AGLYAMARILYLL--QKVN----GWDSVLKLLLIMATLTVIFAEL 291
Query: 298 MAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALL 357
A+ Q+D+KR++AYSS+GQ+G I L +G A + ++H +NHA++K ++
Sbjct: 292 SALRQKDVKRMIAYSSIGQVGLIALAFSLGTQA--------GVDAGVFHMLNHAIVKTMM 343
Query: 358 FLVAGVVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSA 417
FL G V +G + + GL K MP T + +GA + VG+P N F SK+ I ++
Sbjct: 344 FLGVGYVGVMVGGTRIEDFRGLGKRMPLTALSLSVGAISTVGVPLFNVFWSKFRIIVATI 403
Query: 418 LFNPLLGAIAIIGTAFCTAA-YVRVLFT-FFGRPSEKVMKAKDPGATMLLPIFILVIAII 475
+ A+ ++ + A Y R+L +F E++ + +++ + +L + I+
Sbjct: 404 QAGFVWPAVLVLFASVVEAVYYFRLLHVMWFAGEGERIKE-----GWIVVFLLLLALIIV 458
Query: 476 GMGLFP---WQI-----SDKFMVPAAKSLWDIMGYV 503
G+G++P W+I SD F V + ++G V
Sbjct: 459 GIGIYPTPVWEIVKRAGSDIFAVKVYINNVPLLGVV 494
>gb|AAF21815.1|AF097740_4 (AF097740) multiple resistance and pH regulation related protein D
[Bacillus firmus]
Length = 493
Score = 233 bits (588), Expect = 4e-60
Identities = 156/499 (31%), Positives = 258/499 (51%), Gaps = 33/499 (6%)
Query: 7 IIIIPLFGAFSMPIVSLLKGKAKEIWATIISFAT---LIVGIEVFREVWSGGTIVYALGS 63
++I+P+ F + +L K + I FA L+V I + +V+ G V LG+
Sbjct: 4 LVILPILIPFIVGSFLILFAKHHSLQRVISGFAVVGMLLVSIYLAVDVYQNGITVLELGN 63
Query: 64 -ETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILIL 122
+ PFG IV D F +MV++ + V + + ++ + + + +Y L
Sbjct: 64 WQAPFG-------IVLVADLFATMMVILASIVGVVCLFFAFQTISSEREKYYFYPFYFFL 116
Query: 123 ELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLL 182
G+ G +TGD+FN +VF E+M IASY L+ ++ + +KY+ + AS ++
Sbjct: 117 LAGVNGAFLTGDLFNLFVFFEVMLIASYILIVLGGTKYQ-LRESLKYVVINVFASILFIV 175
Query: 183 GIALLYGQYGTLTMGYLAVKMSE-NPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPA 241
G+A +Y GTL M LAVK+ E T V + +FL K G P++ WL ++
Sbjct: 176 GVAYIYSITGTLNMADLAVKVGELEQTGVLNVIAVIFLVVFAMKGGLFPLYFWLPRSYFG 235
Query: 242 APSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVV 301
P++I+A+ GL+ K+G IYAI R IF +P +I+I A +T+ G AV
Sbjct: 236 PPAAIAALFGGLLTKVG-IYAIMRTFTLIF--NHDPGFTHTLILILAGLTMFFGVLGAVS 292
Query: 302 QEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVA 361
Q D KR+L+Y + Q+GY+++GLGI ++A+AGAIY+ +H ++KA LFL A
Sbjct: 293 QFDFKRILSYHIISQVGYMVMGLGI--------YTQLAIAGAIYYIAHHIIVKAALFLFA 344
Query: 362 GVVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSAL-FN 420
G GT +L ++ GL KT P + F I A ++ G+PPL+GF SK+ + ++ L N
Sbjct: 345 GATQRITGTTDLKKMGGLLKTHPWLAWMFFISAISLAGIPPLSGFFSKFALILAAILNEN 404
Query: 421 PLLGAIAI-IGTAFCTAAYVRVLFTFFGRPSEKVMKAKDPGATMLLPIFILVIAIIGMGL 479
++ A+A+ +G + ++ F+G +A +LLPI LV I +G
Sbjct: 405 YIIAAVALAVGLLTLFSMMKIFIYAFWGEQKHTEEQANFKVGKLLLPIVPLVALTIILGF 464
Query: 480 -------FPWQISDKFMVP 491
+ Q++D+ + P
Sbjct: 465 AAEPIFQYSLQVADQILDP 483
>pir||T51314 probable CO-induced hydrogenase complex chain CooM [imported] -
Rhodospirillum rubrum >gi|1515466|gb|AAC45116.1|
(U65510) CooM [Rhodospirillum rubrum]
Length = 1265
Score = 232 bits (585), Expect = 9e-60
Identities = 139/414 (33%), Positives = 220/414 (52%), Gaps = 24/414 (5%)
Query: 79 EVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIAITGDIFNF 138
E G + LI + +YS+ YMKH G+ +Y+ + ++ ++G+A T + NF
Sbjct: 274 ESGDLGGLFALIFAAIGLAVTVYSVGYMKHGHGVNRYFFFLFLMIGSLIGVATTNHLGNF 333
Query: 139 YVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQYGTLTMGY 198
Y+F E+M+ SY LV T + ++AG+KY + + + + GI +L+ Q GT +
Sbjct: 334 YLFWELMTWMSYLLV-IHEQTAKALKAGMKYFLICASGAYVMHFGILVLHAQLGTFEISE 392
Query: 199 LAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPSSISAMLSGLVIKIG 258
+A + +A + LA FL G + K+G P++ WL +AHP APSSIS +SG++ K
Sbjct: 393 IAPCIGTLSPALAGVVLATFLIGFMAKAGLFPLYSWLPEAHPVAPSSISGPMSGILTK-A 451
Query: 259 GIYAIARVVFSIFWPAI--------NPATVGWIIIIFACITLIVGNAMAVVQEDMKRLLA 310
GI + +++F IF + G +++ ITL++G A Q D+KRLLA
Sbjct: 452 GILGMVKLLFGIFGVGALGQFGLFAGLSLPGAVLVALGGITLLLGEVQAYRQTDIKRLLA 511
Query: 311 YSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVVLHELGT 370
YS++ QIG I + LG+G +ALAG ++H NHA+MK +LF G ++
Sbjct: 512 YSTLAQIGEITMVLGVGT--------SLALAGGLFHVTNHAVMKTMLFFAVGALILRSAG 563
Query: 371 RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWL-IYESSALFNPLLGAIAII 429
R+L++L GL K MP T IG AI+G+PP GF SK+L IY + A+ ++
Sbjct: 564 RSLDDLKGLGKVMPFTGLCLGIGLLAIMGVPPFGGFVSKFLMIYACVEAGQVGVAAVILV 623
Query: 430 GTAFCTAAYVRVLFTFFGRP--SEKVMKAKDPGATMLLPIFILVIAIIGMGLFP 481
G+ Y RVL F P KV++A TM + + L ++ G++P
Sbjct: 624 GSVIGALYYARVLRAVFFEPYTGPKVVEAP---LTMRIALGALAGVVVFTGVYP 674
Score = 220 bits (554), Expect = 4e-56
Identities = 135/451 (29%), Positives = 228/451 (49%), Gaps = 33/451 (7%)
Query: 54 GGTIVYALGSETPFGKADFPIRIV-----------WEVDKFGAIMVLIITFVSFLAILYS 102
G +VY LG + + ++ D +I V + +LYS
Sbjct: 716 GAVVVYILGKRSTVVAGSLSVAVMALALAGILIQSGRYDLLSFWFAALIVVVGAINLLYS 775
Query: 103 LEYMKHDTGLEKYYTLILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEG 162
+ YM H +++ +++ G+LG+ + D+FNF+ F E+MS + LV +T +
Sbjct: 776 IGYMAHGHAQNRFFFFFVMMIGGLLGVTASDDLFNFFAFWEVMSSWTLYLVIIHEETKDS 835
Query: 163 IEAGIKYMFVGSLASSFVLLGIALLYGQYGTLTMGYLAVKMSENPTIVAKIALALFLGGL 222
++ G KY + +SF+ LG+A+L + GT M L P ++ L L GL
Sbjct: 836 LDEGTKYFIFNFVGASFLFLGVAILAAKAGTFEMALLPQAALSMPVGWLAVSAGLILAGL 895
Query: 223 LFKSGAAPVHMWLADAHPA-APSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVG 281
L K+ P+ + HPA AP+ +S +S +++K+G Y + +++ ++ G
Sbjct: 896 LMKAAQLPLRIDY-QMHPAPAPTPVSGYISAVLLKVGP-YGVLKIMVALGAGGGLARIAG 953
Query: 282 ---W------IIIIFACITLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYG 332
W ++ + A +T++ AMAVVQ +KRLL YS+V Q+GY+LLGL +G
Sbjct: 954 LGAWMPDPLVVVQVIAALTVLYAGAMAVVQNGVKRLLIYSTVSQLGYVLLGLSLG----- 1008
Query: 333 SKVGEIALAGAIYHTVNHALMKALLFLVAGVVLHELGTRNLNELSGLAKTMPKTTFAFLI 392
+ +AG + H VNH ++K +LFL AG +L + +L++L GL + MP T FL
Sbjct: 1009 ---SALGVAGGLMHFVNHMMLKDILFLAAGCILAQAHVHSLDDLGGLGRKMPITFGLFLF 1065
Query: 393 GAAAIVGMPPLNGFASKWLIYESSAL-FNPLLGAIAIIGTAFCTAAYVRVLFT-FFGRPS 450
++ G+PP NGFASKWLIY+ + + LL A++ + F AA ++ + F G S
Sbjct: 1066 AGLSLSGIPPFNGFASKWLIYQGAFQGGHYLLAMAALMSSLFTLAAVLKFTHSAFLGPLS 1125
Query: 451 EKVMKAKDPGATMLLPIFILVIAIIGMGLFP 481
++ ML+P+ +L + +G+FP
Sbjct: 1126 PAAATMREAPPVMLIPMGLLAAGSVIVGVFP 1156
Score = 81.9 bits (199), Expect = 2e-14
Identities = 64/214 (29%), Positives = 108/214 (49%), Gaps = 23/214 (10%)
Query: 292 LIVGNAMAVVQ-EDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNH 350
+++G +A+ D+ R+L YS++ +IGY+L+GLGIG A GE GA+ H
Sbjct: 15 MLIGEGLALRNVRDLARMLTYSTIAEIGYVLMGLGIGTAA-----GE---TGAVMHLGYQ 66
Query: 351 ALMKALLFLVAGVVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKW 410
A+M+AL+ + A ++ G+ L+ L G + MP + F G +++G+ P G SK+
Sbjct: 67 AIMRALVVVAAWHLIRRSGSSKLDALVGSVERMPFVSLMFGFGLFSVMGLSPFKGSFSKF 126
Query: 411 LIYESSALFNPLLGAIAIIGTAFCTAAYVRVLFTF----FGRPSEKVMKAKDPGATML-- 464
+I +A+ N G +A +GT A + T F R S ++ K +
Sbjct: 127 VIL-YAAIENGYWG-LAAVGTVASIIAAFYYIHTIQQVCFQRQSHGILGDKPIPFFQIPV 184
Query: 465 --LPIFILVIAIIGMGLFPWQISDKFMVPAAKSL 496
LPI +L + + M L P D F++ AA ++
Sbjct: 185 GQLPIVVLALVTVVMSLDP----DPFLMLAANAV 214
>pir||G75060 hydrogenase-4 component B (EC 1.-.-.-) PAB1392 - Pyrococcus abyssi
(strain Orsay) >gi|5458893|emb|CAB50380.1| (AJ248287)
HYDROGENASE-4 COMPONENT B (EC 1.-.-.-) [Pyrococcus
abyssi]
Length = 647
Score = 222 bits (561), Expect = 6e-57
Identities = 138/411 (33%), Positives = 224/411 (53%), Gaps = 21/411 (5%)
Query: 80 VDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL-ILELGMLGIAITGDIFNF 138
+D F I +LI+ + F A LYS+ YM+ G E Y + L M I IT ++ F
Sbjct: 61 IDGFSLIFMLILGILGFSASLYSIPYMERHPGKEWVYAVAYNAFLLSMFLILITSNLVWF 120
Query: 139 YVFLEIMSIASYALVAFRHDTWE--GIEAGIKYMFVGSLASSFVL-LGIALLYGQYGTL- 194
F E+M+++S+ L+ TW+ + GIKY + ++F L + + + Y G+L
Sbjct: 121 VFFWELMTLSSFILI-----TWDEKDFDPGIKYYIAMHILTTFPLFISLGVSYSFLGSLD 175
Query: 195 TMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPSSISAMLSGLV 254
M Y +K P+ + A FL + KSG P H W+ + APS+IS++L+G +
Sbjct: 176 AMTYPNLKSL--PSSATLLLYASFLIAFMAKSGIVPFHFWVPSTYKVAPSNISSLLAGAM 233
Query: 255 IKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQEDMKRLLAYSSV 314
KI ++ + R++++ P ++G+++ + +TL VG A+ + D K+LLAY S+
Sbjct: 234 EKIA-VFGLIRIMYTAL---PTPKSIGYLVALLGAVTLTVGTLYALRESDAKKLLAYHSI 289
Query: 315 GQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVVLHELGTRNLN 374
GQ+GYI LG+GIG+ + S +G + + I+H +NH+L K LFL AG V + G NL+
Sbjct: 290 GQMGYIWLGIGIGL-SLDSPLGALGMFAGIFHALNHSLFKGSLFLSAGSVEYATGETNLD 348
Query: 375 ELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLI----YESSALFNPLLGAIAIIG 430
L GLA+ M T A L+ + AI G+PP NGF SKWLI Y S + +A+
Sbjct: 349 NLGGLAERMKWTGLATLLASLAISGVPPFNGFLSKWLIYTAGYNSGDMVLSFGAVLAVFI 408
Query: 431 TAFCTAAYVRVLFTFFGRPSEKVMKAKDPGATMLLPIFILVIAIIGMGLFP 481
+A A++++ + FG SE+ + +M++P IL + +G+FP
Sbjct: 409 SAVTLASFIKFYTSQFGGESERYRDVSEVPLSMVVPQLILSSLCLIIGIFP 459
>gb|AAG19080.1| (AE005007) NADH dehydrogenase/oxidoreductase; NdhG2 [Halobacterium
sp. NRC-1]
Length = 380
Score = 220 bits (556), Expect = 2e-56
Identities = 133/346 (38%), Positives = 190/346 (54%), Gaps = 14/346 (4%)
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
++L G+ G+ +T D+FN YVFLEI + +YALVA D+ + A +KY+ VG+ +S
Sbjct: 1 MLLVAGLSGMTVTADLFNMYVFLEITGLTAYALVAAGEDSRSTV-AALKYLLVGTFGASL 59
Query: 180 VLLGIALLYGQYGTLTMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAH 239
LLGI Y GTL M LA K+++ ++A+ A AL + GL K P+H W DA+
Sbjct: 60 FLLGIGYAYVGTGTLNMADLAAKLADADPVLAQAAFALIVVGLFIKVAVFPLHTWQPDAY 119
Query: 240 PAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPAT--VGWIIIIFACITLIVGNA 297
AP ++SA++S LV + YA+ RVV+++F +T I+I A ++++ G+
Sbjct: 120 AGAPDTVSALISALVSTVAA-YALLRVVYTVFGAGFLDSTPVARAILIGGAVVSIVAGSL 178
Query: 298 MAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALL 357
+AV Q ++KR+LAYSSV Q G IL + IG + AL GA H V HA+MK L
Sbjct: 179 LAVSQSEIKRVLAYSSVSQFGLILAAIAIG--------NDTALTGAAIHLVGHAVMKGGL 230
Query: 358 FLVAGVVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSA 417
FL AGVV E G R ++E GLA P AF + A ++VG+PP GFA KW I +A
Sbjct: 231 FLTAGVVATETGARTIDEFDGLADRSPVAAGAFGVLAVSMVGVPPTVGFAGKWYIAIGAA 290
Query: 418 LFNPLLGAIAIIGTAFCTAAYVRVLF--TFFGRPSEKVMKAKDPGA 461
I+ + T AY L FF P+ + GA
Sbjct: 291 EAGSWALLAVIVASTLLTLAYFLRLVERMFFRAPATVPADGRSDGA 336
>dbj|BAB05035.1| (AP001511) Na+/H+ antiporter [Bacillus halodurans]
Length = 493
Score = 219 bits (551), Expect = 8e-56
Identities = 154/497 (30%), Positives = 252/497 (49%), Gaps = 27/497 (5%)
Query: 7 IIIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREVWSGGTIVYALGSET- 65
++I+P+ F + +L K I + A +VG+ +F + T+VY G T
Sbjct: 4 LVILPILLPFIVGSFLILFAKHHGIQRFLT--AITMVGLLLFSFYLA--TLVYQEGIYTL 59
Query: 66 PFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELG 125
G P IV D F +M+++ + V + ++ + + + +Y L L G
Sbjct: 60 QLGNWPAPFGIVLVADMFATMMIILSSIVGVACLFFAFQTISSERERYYFYPFYLFLIAG 119
Query: 126 MLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIA 185
+ G +TGD+FN +VF E+M IASYAL+ ++ + KY+ + AS ++G+A
Sbjct: 120 VNGAFLTGDLFNLFVFFEVMLIASYALIVLGGTKYQ-LRESFKYVVINVFASILFIVGVA 178
Query: 186 LLYGQYGTLTMGYLAVKMSE-NPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
LY GTL LA++++E V + LFL K P++ WL ++ P+
Sbjct: 179 YLYSVTGTLNFADLAIRVAELEQQGVLNVIAILFLVVFGMKGALFPLYFWLPRSYYGPPA 238
Query: 245 SISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQED 304
+I+A+ GL+ K+G IYAI R IF +P+ II+ A T+ G AV Q D
Sbjct: 239 AIAALFGGLLTKVG-IYAIIRTFTLIF--NHDPSFTHTIILALAGFTMFFGVLGAVSQFD 295
Query: 305 MKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVV 364
KR+L+Y + Q+GY+++GLGI +ALAGAIY+ +H ++KA LFL AG
Sbjct: 296 FKRILSYHIISQVGYMVMGLGI--------FTPLALAGAIYYIAHHIIVKAALFLFAGAT 347
Query: 365 LHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKW-LIYESSALFNPLL 423
GT L ++ GL KT P + F I A ++ G+PPL+GF SK+ LI ++
Sbjct: 348 EKITGTTELKKMGGLLKTHPWLAWLFFISAISLAGIPPLSGFFSKFALILAGFEEGRYVI 407
Query: 424 GAIAIIGTAFCTAAYVRV-LFTFFGRPSEKVMKAKDPGATMLLPIFILVIAIIGMGL--- 479
+A+I + +++ ++ F+G +AK P +LLPI LV+ I +G
Sbjct: 408 VTVALIVGLLTLFSMMKIFIYAFWGEQKHTEQQAKMPIGKLLLPIAPLVVLTIVLGFGAE 467
Query: 480 ----FPWQISDKFMVPA 492
+ Q++D+ + P+
Sbjct: 468 PIFQYSLQVADELLNPS 484
>sp|P23482|HYFB_ECOLI HYDROGENASE-4 COMPONENT B >gi|7446810|pir||A65024 hypothetical
protein b2482 (bcp 3' region) - Escherichia coli (strain
K-12) >gi|1788827|gb|AAC75535.1| (AE000335) hydrogenase
4 membrane subunit [Escherichia coli K12]
>gi|1799910|dbj|BAA16360.1| (D90876) similar to [PIR
Accession Number D49749] [Escherichia coli]
>gi|1805541|dbj|BAA16370.1| (D90877) similar to [PIR
Accession Number D49749] [Escherichia coli]
>gi|2668496|gb|AAB88564.1| (M63654) HyfB [Escherichia
coli]
Length = 672
Score = 215 bits (542), Expect = 9e-55
Identities = 155/507 (30%), Positives = 256/507 (49%), Gaps = 31/507 (6%)
Query: 1 MTWLPFIIIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREVWSGGTIVYA 60
+TW + + + + + L K I + + +I GI ++ +G T+V
Sbjct: 7 LTWSLILYLFASLASLFLLGLDRLAIKLSGITSLVGGVIGIISGIT---QLHAGVTLVAR 63
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKH--DTGLEKYYTL 118
PF AD +R+ D A MVL+I+ + + LYSL YM+ G
Sbjct: 64 FAP--PFEFADLTLRM----DSLSAFMVLVISLLVVVCSLYSLTYMREYEGKGAAAMGFF 117
Query: 119 ILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASS 178
+ I M+ + + + F F V E+MS++S+ LV R D I AG+ Y F+ S
Sbjct: 118 MNIFIASMVALLVMDNAFWFIVLFEMMSLSSWFLVIARQDK-TSINAGMLYFFIAHAGSV 176
Query: 179 FVLLGIALLYGQYGTLTMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADA 238
+++ L+ + G+L +S +P + + + L F G K+G P+H WL A
Sbjct: 177 LIMIAFLLMGRESGSLDFASFRT-LSLSPGLASAVFLLAFFG-FGAKAGMMPLHSWLPRA 234
Query: 239 HPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAM 298
HPAAPS SA++SG+++KIG I+ I +V + P G +++ I+ ++G
Sbjct: 235 HPAAPSHASALMSGVMVKIG-IFGILKVAMDLLAQTGLPLWWGILVMAIGAISALLGVLY 293
Query: 299 AVVQEDMKRLLAYSSVGQIGYILLGLGIGIVA---YGSKVGEIALAGAIYHTVNHALMKA 355
A+ ++D+KRLLA+S+V +G ILL +G+ +V + + + L GA++H +NHAL K
Sbjct: 294 ALAEQDIKRLLAWSTVENVGIILLAVGVAMVGLSLHDPLLTVVGLLGALFHLLNHALFKG 353
Query: 356 LLFLVAGVVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES 415
LLFL AG ++ L T ++ ++ LAK MP T A LIG AI +PPLNGF S+W ++S
Sbjct: 354 LLFLGAGAIISRLHTHDMEKMGALAKRMPWTAAACLIGCLAISAIPPLNGFISEWYTWQS 413
Query: 416 -------SALFNPLLGAIAIIGTA----FCTAAYVRVL-FTFFGRP-SEKVMKAKDPGAT 462
A+ L G IA++ A +V++ TF G P S +A++ T
Sbjct: 414 LFSLSRVEAVALQLAGPIAMVMLAVTGGLAVMCFVKMYGITFCGAPRSTHAEEAQEVPNT 473
Query: 463 MLLPIFILVIAIIGMGLFPWQISDKFM 489
M++ + +L + + L ++ K M
Sbjct: 474 MIVAMLLLAALCVLIALSASWLAPKIM 500
>dbj|BAA35095.1| (AB015981) MnhA [Staphylococcus aureus]
Length = 801
Score = 210 bits (528), Expect = 4e-53
Identities = 153/521 (29%), Positives = 254/521 (48%), Gaps = 39/521 (7%)
Query: 1 MTWLPFIIIIPLFGAFSMPIVSLLKGKAKEIWATI-ISFATLIVGIEVFREVWSGGTIVY 59
M+ L +I+PL A +PI+ + W + + I + + + SG T++
Sbjct: 1 MSLLHIAVILPLIFALIIPILYRFFKRIHLGWFVLSVPIVIFIYMLTLIKTTMSGNTVMK 60
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
L FG +F + + D G + L+I+ + L +LYS+ Y+ L +Y +
Sbjct: 61 TLNWMPHFGM-NFDLYL----DGLGLLFSLLISGIGSLVVLYSIGYLSKSEQLGNFYCYL 115
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
L+ MLG+ ++ ++ Y+F E+ S +S+ L++F + I K + +
Sbjct: 116 LLFMGAMLGVVLSDNVIILYLFWELTSFSSFLLISFWRERQASIYGAQKSLIITVFGGLS 175
Query: 180 VLLGIALLYGQYGTLTMGYLAVKMSE---NPTIVAKIALALFLGGLLFKSGAAPVHMWLA 236
+L GI LL + ++ Y+ SE +P + A+ L + G KS P ++WL
Sbjct: 176 LLGGIILLAIPTQSFSIQYMIQHASEIQNSPFFI--FAMILIMIGAFTKSAQFPFYIWLP 233
Query: 237 DAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWI--IIIFACITLIV 294
DA A P+ +SA L + G+Y IAR+ I A+ GW+ + + ITL
Sbjct: 234 DAMEA-PTPVSAYLHSATMVKAGLYLIARMT------PIFAASQGWVWTVTLVGLITLFW 286
Query: 295 GNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAY-----GSKVGEIALAGAIYHTVN 349
+ A Q+D+K +LA+S+V Q+G I+ LGIG ++Y SK+ A AI+H +N
Sbjct: 287 ASLNATKQQDLKGILAFSTVSQLGMIMAMLGIGAISYHYQGDDSKIYAAAFTAAIFHLIN 346
Query: 350 HALMKALLFLVAGVVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASK 409
HA K LF++ G V H GTR++ +L GL MP + +I A ++ G+PP NGF SK
Sbjct: 347 HATFKGALFMITGAVDHSTGTRDVKKLGGLLTIMPISFTITVITALSMAGVPPFNGFLSK 406
Query: 410 WLIYES------SALFNP-----LLGAIAIIGTAFCTAAYVR-VLFTFFG--RPSEKVMK 455
E+ + LF+ L I I+G+ F ++ ++ FFG +P + K
Sbjct: 407 ESFLETTFTASQANLFSVDTLGYLFPIIGIVGSVFTFVYSIKFIMHIFFGQYKPEQLPKK 466
Query: 456 AKDPGATMLLPIFILVIAIIGMGLFPWQISDKFMVPAAKSL 496
A + MLL IL +I GLFP +++ + PA S+
Sbjct: 467 AHEVSILMLLSPAILATLVIVFGLFPGILTNSIIEPATSSI 507
>pir||H82494 probable NADH dehydrogenase VCA0155 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9657544|gb|AAF96068.1|
(AE004356) NADH dehydrogenase, putative [Vibrio
cholerae]
Length = 498
Score = 209 bits (527), Expect = 5e-53
Identities = 133/452 (29%), Positives = 239/452 (52%), Gaps = 26/452 (5%)
Query: 67 FGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGM 126
FG+ P IV+ D MV++ + ++++Y++ + +Y+ L+ +L G+
Sbjct: 62 FGQWPAPFGIVFVADLLSVGMVMVTAIIGLVSVIYAIADLSAKPSYARYHALLHVLLAGV 121
Query: 127 LGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIAL 186
G +TGDIFN YV+ E+M IAS+ L+ + + I+ IKY+ + +++ LL I L
Sbjct: 122 YGAFLTGDIFNLYVWFEVMLIASFGLMVLDANQQQ-IDGAIKYVLLNLISTLVFLLSIGL 180
Query: 187 LYGQYGTLTMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPSSI 246
LYG GTL + L K + + L L K+ P+ WL ++ PS+I
Sbjct: 181 LYGATGTLNLADLHDKAQSLAPEMKTMLAGLLLFAFSIKAALFPLFAWLPASYHTLPSAI 240
Query: 247 SAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGW--IIIIFACITLIVGNAMAVVQED 304
A+ + L+ K+G +YA+ RV F++ +P GW +++ A +T++ G A Q D
Sbjct: 241 VALFAALLTKVG-VYALLRV-FTLVFPLDGS---GWQPVLLGIAALTMLTGVLGAASQYD 295
Query: 305 MKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVV 364
+K++L++ + QIGY+++GL I +A+ GAI++ ++H L+K LFL+ G++
Sbjct: 296 IKKILSFHIISQIGYMIMGLAI--------YTPLAITGAIFYVIHHILVKGNLFLIGGLI 347
Query: 365 LHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESS-ALFNPLL 423
+ GT L +L G+ + MP TF FL+ A ++ G PPL+GF K+L+ ++S A L
Sbjct: 348 GRKYGTTQLTQLGGVYRAMPWLTFGFLLAAFSLAGFPPLSGFWGKFLVIKASLAAELYWL 407
Query: 424 GAIAIIGTAFCTAAYVRVLFTFFGRPSEKVMKAKDPGATML----LPIFILVI--AIIGM 477
AIA++ + ++ F + + ++ + + L LPI +L + +IG+
Sbjct: 408 AAIALLVGLLTIFSMTKIWNEVFWKDAPAALQQETLARSTLGLYALPILVLTLFSLVIGL 467
Query: 478 GLFPWQISDKFMVPAAKSLWDIMGYVISLMGG 509
P+ +F AA+ L Y+ +++GG
Sbjct: 468 AAQPFY---QFATLAAEQLLTPTAYIHAVLGG 496
>dbj|BAA35098.1| (AB015981) MnhD [Staphylococcus aureus]
Length = 498
Score = 200 bits (504), Expect = 3e-50
Identities = 143/480 (29%), Positives = 253/480 (51%), Gaps = 34/480 (7%)
Query: 40 TLIVGIEVFREVWSGGTIVYALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAI 99
TL+ I V G I LGS KA P IV+ +D F A++++ ++ + I
Sbjct: 42 TLVAAIINLANVVKHGPIRVELGS----WKA--PYSIVFVLDIFSALLIITSIIITAIVI 95
Query: 100 LYSLEYMKHDTGLEKYYTLILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDT 159
LYS + + + YY +L + +G++G TGDIFN +VF E+ ++SY L+ T
Sbjct: 96 LYSYQTIGIERERYYYYFSVLFMLIGIIGAFTTGDIFNLFVFFEVFLMSSYFLLVIG-ST 154
Query: 160 WEGIEAGIKYMFVGSLASSFVLLGIALLYGQYGTLTMGYLAVKM---SENPTIVAKIALA 216
++ IKY+ V ++SSF ++G+A+LY GTL + ++ K+ S + + + I
Sbjct: 155 KIQLQETIKYVLVNVVSSSFFVMGVAILYSVVGTLNLADISNKLANLSAHDSGLVNIVFI 214
Query: 217 LFLGGLLFKSGAAPVHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAIN 276
LF+ K+G P+ +WL A+ A P I A L+ K+G +YAIAR + F + N
Sbjct: 215 LFIFVFATKAGVFPMFVWLPSAYYAPPIPIIAFFGALLTKVG-VYAIARTLSLFF--SDN 271
Query: 277 PATVGWIIIIFACITLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVG 336
+ ++I+ A +T+I G AV ++K+++ Y+ + +G IL+G+ + +
Sbjct: 272 VSFSHYVILFLALLTIIFGCVGAVAYANIKKIILYNVMIAVGVILVGVAM--------MT 323
Query: 337 EIALAGAIYHTVNHALMKALLFLVAGVVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAA 396
E + GAIY+T++ L+K LFL+ G+++ GT +L + GL K P ++F I A +
Sbjct: 324 ESGMIGAIYYTLHDMLVKLALFLLIGIMIKITGTADLRQFGGLIKRYPVLGWSFFIAALS 383
Query: 397 IVGMPPLNGFASKWLIYESSALFN-PLLGAIAIIGTAFCTAAYVRV-LFTFFGRPSEKVM 454
+ G+PPL+GF K+ I +S+ L G I ++ + + +R+ L FFG+P +
Sbjct: 384 LAGIPPLSGFYGKFFIVQSTFERGFYLSGVIVLLSSLVVLYSVIRIFLQGFFGQPKGYDL 443
Query: 455 KAK-DPGATMLLPIFILVIAIIGMGLFPWQISDKFMVP----AAKSLWDIMGYVISLMGG 509
K D + I +VI ++ + +S ++ P A++ ++ YV +++GG
Sbjct: 444 NNKVDVKYLTTIAIVAVVITVL------YGLSADYLYPMVKAGAETFYNPSTYVKAVLGG 497
>emb|CAA63734.1| (X93358) phaA [Sinorhizobium meliloti]
Length = 725
Score = 198 bits (498), Expect = 1e-49
Identities = 148/505 (29%), Positives = 238/505 (46%), Gaps = 33/505 (6%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREVWSGGTIVYALGS 63
L I++P G+ + A +A I+ +V ++ V SGG + Y +
Sbjct: 32 LSVFILVPFAGSLIAIFFPSDQRGAISWFAGAIALVCFLVTAGLYPYVASGGVLHYRIDW 91
Query: 64 ETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILE 123
G +F +R+ D F + +IT + L +LY+ YM + + +++ L L
Sbjct: 92 VPELG-LNFTLRM----DGFAWLFSALITAIGVLVVLYARYYMAEEDPVPRFFALFLAFM 146
Query: 124 LGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFV---GSLASSFV 180
MLG+ ++G++ VF E+ SI S+ L+ + H +A + + G LA
Sbjct: 147 GSMLGVVLSGNLILLAVFWELTSIVSFLLIGYWHHNAHARDAARMALTITGTGGLAMFVG 206
Query: 181 LLGIALLYGQYGTLTMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHP 240
L+ I + G Y + + +P + L L G L KS P H WL A
Sbjct: 207 LIIIGKIVGSYELDAVLASGDAIRNHPLYGTVLVLVLL--GALTKSAQFPFHFWLPHAM- 263
Query: 241 AAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVG-WIIIIFACITLIVGNAMA 299
AAP+ +SA L + G++ + R FWP + WI+ + TL++G A
Sbjct: 264 AAPTPVSAYLHSATMVKAGVFLLVR-----FWPVMAGTEAWFWIVGLAGLTTLLLGAYFA 318
Query: 300 VVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFL 359
+ Q+D+K LLAYS++ +G I + L +G +A A++H VNHA KA LF+
Sbjct: 319 IFQQDLKGLLAYSTISHLGLITVLLSLG--------SPLAAVAAVFHIVNHATFKASLFM 370
Query: 360 VAGVVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSA-- 417
AG++ HE GTR++ L GL MP T ++ +AA+ G+P LNGF SK + + +
Sbjct: 371 AAGIIDHESGTRDIRRLGGLFHFMPITATLAMVASAAMAGVPLLNGFLSKEMFFAEAIET 430
Query: 418 -LFNPL---LGAIAIIGTAFCTAAYVRVLF-TFFGR-PSEKVMKAKDPGATMLLPIFILV 471
L NPL +A I F +R + FFGR P++ K +P M P+ LV
Sbjct: 431 HLVNPLDTVTPYVATIAGMFAVTYSLRFIHGVFFGRPPADLPRKPHEPPRWMRAPLDFLV 490
Query: 472 IAIIGMGLFPWQISDKFMVPAAKSL 496
+A + +G+ P Q F+ A S+
Sbjct: 491 LACLVVGIIPAQTIGPFLHTAVLSV 515
>gb|AAF21812.1|AF097740_1 (AF097740) multiple resistance and pH regulation related protein A
[Bacillus firmus]
Length = 805
Score = 197 bits (495), Expect = 3e-49
Identities = 157/523 (30%), Positives = 248/523 (47%), Gaps = 41/523 (7%)
Query: 1 MTWLPFIIIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREVWSGGTIVYA 60
MT L + I P +P + + W ++ L + + + S G +V
Sbjct: 1 MTVLHWATISPFLLPILIPFLYKYARRIHTGWFVLVLPLVLFIYFIQYLSITSTGGVVEH 60
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDT-GLEKYYTLI 119
P +F + VD + L+IT + L ILYS+ Y+ T L +Y +
Sbjct: 61 TIPWVPSLGINFTVF----VDGLSLLFALLITGIGTLVILYSIFYLSKKTESLNNFYVYL 116
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
L+ MLG+ ++ ++ YVF E+ S+AS L+++ + K M +
Sbjct: 117 LMFMGAMLGVVLSDNLIVLYVFWELTSLASSLLISYWFHREKSTYGAQKSMLITVFGGFA 176
Query: 180 VLLGIALLYGQYGTLTMGYLAVKMSENPTIVAKI-----ALALFLGGLLFKSGAAPVHMW 234
+L G +LLY GT ++ + EN +V A+ L L G KS P H+W
Sbjct: 177 MLGGFSLLYVMTGTFSIRGII----ENVDLVTSSELFLPAMILVLLGAFTKSAQFPFHIW 232
Query: 235 LADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIV 294
L DA A P+ +SA L + GIY +AR+ +F A W++ F +TL+
Sbjct: 233 LPDAMEA-PTPVSAYLHSATMVKAGIYLVARLT-PVF---AGSAEWFWLLTGFGVVTLLW 287
Query: 295 GNAMAVVQEDMKRLLAYSSVGQIGYI--LLGLGIGIVAYGSKVG----EIALAGAIYHTV 348
G+ AV Q+D+K +LA+S+V Q+G I LLGLG + +G V A+ AI+H +
Sbjct: 288 GSTSAVRQKDLKGILAFSTVSQLGLIMTLLGLGSAAIYFGESVDPAFYSFAIMAAIFHLI 347
Query: 349 NHALMKALLFLVAGVVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFAS 408
NHA K LF+ A ++ HE GTR++ +L GL MP T LIG A++ G+PP NGF S
Sbjct: 348 NHATFKGSLFMTACIIDHETGTRDIRKLGGLMAIMPVTFTVSLIGLASMAGLPPFNGFLS 407
Query: 409 KWLIY-------ESSAL----FNPLLGAIAIIGTAFCTAAYVRVLF--TFFG--RPSEKV 453
K + + E +A F ++ +A I + F T Y ++F TF G +P
Sbjct: 408 KEMFFTALLRATEMNAFNMETFGIIIVVLAWIASVF-TFLYCLIMFFKTFTGKFKPENYD 466
Query: 454 MKAKDPGATMLLPIFILVIAIIGMGLFPWQISDKFMVPAAKSL 496
+K + ML+ IL +I G FP ++ + PA +++
Sbjct: 467 VKVHEAPIGMLISPVILGSLVIVFGFFPNILAYTIIEPAMQAV 509
>pir||B72281 hypothetical protein TM1212 - Thermotoga maritima (strain MSB8)
>gi|4981765|gb|AAD36287.1|AE001778_8 (AE001778) NADH
dehydrogenase, putative [Thermotoga maritima]
Length = 626
Score = 195 bits (491), Expect = 9e-49
Identities = 120/407 (29%), Positives = 209/407 (50%), Gaps = 24/407 (5%)
Query: 92 TFVSFLAI----LYSLEYMKHDTGLEKYYTLILILELGMLGIAITGDIFNFYVFLEIMSI 147
+FVS L I L+S ++++ Y +L++ G LG+ + D+ YVF EI +
Sbjct: 73 SFVSLLVIVSVMLFSTKWLETQKYRASYNMFLLMVTAGSLGVFMAADLITLYVFWEIAVL 132
Query: 148 ASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQYGTLTMGYLAVKMSENP 207
+S +V + E +A + Y + ++ + L G L Y +YGTL + +A M +
Sbjct: 133 SSLLIVPM--EKKEARKAVVVYAVMSAVGTYAFLYGTFLAYQRYGTLNIHGIAQGMLNDT 190
Query: 208 TIVAKIALALFLGGL-LFKSGAAPVHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARV 266
+I K+A+ L L + KSG P+H+WL + H AP++ S++LSG IK+G + +
Sbjct: 191 SIGFKMAVFLLLSAAGIAKSGIFPLHIWLRETHGLAPNAFSSVLSGQFIKLGNYIFLLVL 250
Query: 267 VFSIFWPAINPATV-------GWIIIIFACITLIVGNAMAVVQEDMKRLLAYSSVGQIGY 319
+ TV +I+I +++++G MA+ Q+DMK L+AYSSV GY
Sbjct: 251 SVIPSLKVFSEVTVYSGIPLPNYILIALGNVSIVIGTLMAIKQDDMKMLMAYSSVANGGY 310
Query: 320 ILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVVLHELGTRNLNELSGL 379
IL+G+G + + G ++H NHA+ A++F+ V++ T+ ++E+ GL
Sbjct: 311 ILIGIG--------TMDPLGFEGGMFHIFNHAVASAVIFMAFAAVIYRTKTQKISEMGGL 362
Query: 380 AKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV 439
MP T +L ++ G+PP++GF SKW+IY++ + A + + YV
Sbjct: 363 IHKMPVTFLVYLFSIISLAGIPPMSGFISKWMIYQALVRKGMFITAFLAFFGSIGSFLYV 422
Query: 440 --RVLFTFFGRPSEKVMKAKDPGATMLLPIFILVIAIIGMGLFPWQI 484
+ F G+ K K+ A ML P+ +LV+ +G++P+ I
Sbjct: 423 FRPLAGVFLGQLPRKYRDVKEAPAVMLTPMVLLVLISFFLGVWPFPI 469
>gb|AAF65741.1|AF228525_11 (AF228525) F420H2 dehydrogenase subunit FpoN [Methanosarcina mazei]
Length = 493
Score = 195 bits (491), Expect = 9e-49
Identities = 136/489 (27%), Positives = 235/489 (47%), Gaps = 45/489 (9%)
Query: 8 IIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREV-WSGGTIVYALGSETP 66
++I L G F P + G AT+ + A + + ++ F + G ++ Y + SET
Sbjct: 18 LVILLTGVFLSPQSKNILGYL----ATLGTLAAIFLTVKSFGLLTMEGFSVQYTIFSET- 72
Query: 67 FGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGM 126
+D L+ V+ + + S++Y ++ E++YTL+L GM
Sbjct: 73 -----------LSIDALSQFFKLVFLAVALIVSIASIKYTENSDHTEEFYTLVLFATFGM 121
Query: 127 LGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIAL 186
+ +A D+ + E+ S+A++AL F +E +KY +GS++++ +L G++
Sbjct: 122 MIVASANDLILLFCAFELASLATFALAGFEKQNARSLEGAMKYFVIGSVSAALMLFGLSF 181
Query: 187 LYGQYGTLTMGYLAVK---MSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAP 243
+YG GT ++ +A ++ NP + +A+ L G FK P HMW D + +P
Sbjct: 182 VYGATGTTSIPLIAQNPGLLTGNP--IGIVAIVLLTAGFGFKMALVPFHMWAPDTYQGSP 239
Query: 244 SSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQE 303
S +SA+L+ K+G + A VF I A+ P ++ + A +T+ GN +AV Q
Sbjct: 240 SVVSALLAAGSKKMGFVAAFR--VFIIALAALQP-DWQFMFTLLAVVTMTFGNVVAVAQT 296
Query: 304 DMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGV 363
+KR+LAYSS+ Q GYI + + + +ALAG I +T+ HA MKA F+ A
Sbjct: 297 SVKRMLAYSSLAQAGYIAMAFAV--------MTPVALAGGIMYTLAHAFMKAGAFIAAAA 348
Query: 364 VLHELGTR---------NLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYE 414
V+ + + +L+ GL K MP + A+ G+PP GF +K++++
Sbjct: 349 VVWMITSEKTGNLDIPDHLDSFRGLGKRMPLAALCMTVFVFALAGIPPTAGFMAKFVLFS 408
Query: 415 SSALFN-PLLGAIAIIGTAFCTAAYVR-VLFTFFGRPSEKVMKAKDPGATMLLPIFILVI 472
S+ L IAI+ +A Y R V + +F P K K P + + V
Sbjct: 409 STIQAGMTWLAVIAILNSALSLFYYARLVKYMYFMPPEGKTEKVSIP-FPYAAALLVAVA 467
Query: 473 AIIGMGLFP 481
++ MGL+P
Sbjct: 468 GVLVMGLWP 476
>gb|AAF65739.1|AF228525_9 (AF228525) F420H2 dehydrogenase subunit FpoL [Methanosarcina mazei]
Length = 672
Score = 194 bits (489), Expect = 2e-48
Identities = 130/432 (30%), Positives = 214/432 (49%), Gaps = 44/432 (10%)
Query: 80 VDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIAITGDIFNFY 139
+D A+M+ +++FVS L +Y++ YM HD G +Y+ + ML + ++ +I +
Sbjct: 81 IDPLAAVMLSMVSFVSLLIHIYAVSYMSHDAGKARYFAETALFTAAMLSLVLSDNILQLF 140
Query: 140 VFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQY----GTLT 195
V E++ + SY L+ F + A K + L GI +L G
Sbjct: 141 VSWELVGLCSYLLIGFWFEKPSAAAAAKKAFLTTRIGDVMFLTGIIVLTSDLLKVSGGFQ 200
Query: 196 MGYLAVKMSENPTIVAKIALA-----------------LFLGGLLFKSGAAPVHMWLADA 238
G ++ E + + ++A LF GG + KSG P+H+WL DA
Sbjct: 201 DGVYLLRFDEIFSYIPELAALQINILGFEISHLTIITLLFFGGAVGKSGQFPLHVWLPDA 260
Query: 239 HPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAM 298
P+++SA++ + G+Y +AR F +F A + V + F T + M
Sbjct: 261 MEG-PTTVSALIHAATMVTAGVYLVART-FPMFIAAPDSLMV---VAYFGGFTALFAGTM 315
Query: 299 AVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLF 358
+V D+KR+LA+S++ Q+GY++LGLG+G + +G A+ +++H +NHA KALLF
Sbjct: 316 GIVMNDLKRVLAFSTISQLGYMMLGLGLG-----TAIGLEAVGISLFHLINHAFFKALLF 370
Query: 359 LVAGVVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMP------PLNGFASKWLI 412
L AG V+H +GT+++ EL G+ K MP T I A A+ G +GF SK I
Sbjct: 371 LCAGSVIHAVGTQDMRELGGVGKVMPITAATMTIAALALAGFGIPGTSIGTSGFMSKDPI 430
Query: 413 YESSALF----NPLLGAIAIIGTAFCTAAYV-RVLF-TFFGRPSEKVMKAKDPGATMLLP 466
E++ LF + + + I A T+ Y+ R++F TF G+P + P A M +P
Sbjct: 431 IEAAYLFGEHSSNWIPYVFSILAALLTSIYIFRLIFMTFTGKPRSNYHGHESP-AIMTIP 489
Query: 467 IFILVIAIIGMG 478
+ IL I + G
Sbjct: 490 LSILAIFALAFG 501
>sp|Q55429|NU5C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5 >gi|7432381|pir||S75795
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5.2 -
Synechocystis sp. (strain PCC 6803)
>gi|1001283|dbj|BAA10530.1| (D64003) NADH dehydrogenase
subunit 5 [Synechocystis sp.]
Length = 681
Score = 193 bits (486), Expect = 3e-48
Identities = 148/485 (30%), Positives = 240/485 (48%), Gaps = 51/485 (10%)
Query: 1 MTWLPFIIIIPLFGAFSMPI----VSLLKGKAKEIWATII----SFATLIVGIEVFREVW 52
+ WL I ++PLFGA + I + K ++I A I A ++ G ++ ++
Sbjct: 7 LAWL--IPVLPLFGATVVGIGLISFNQATNKLRQINAVFIISCLGAALVMSGALLWDQIQ 64
Query: 53 SGGTIVYALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGL 112
G YA E F + + + +D A+M++I+T V+ L ++Y+ YM HD G
Sbjct: 65 --GHASYAQMIEWA-SAGSFHLEMGYVIDHLSALMLVIVTSVALLVMIYTDGYMAHDPGY 121
Query: 113 EKYYTLILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFV 172
++Y + + MLG+ I+ ++ Y+F E++ + SY L+ F +D +A K
Sbjct: 122 VRFYAYLSLFASSMLGLVISPNLVQVYIFWELVGMCSYLLIGFWYDRKAAADACQKAFVT 181
Query: 173 GSLASSFVLLGIALLYGQYGTLTMGYLAVKMSE-------NPTIVAKIALALFLGGLLFK 225
+ +LLGI LY G+ G + ++ + I A +A+ +FLG + K
Sbjct: 182 NRVGDFGLLLGILGLYWATGSFDFGTIGERLEGLVSSGVLSGAIAAILAILVFLGPVA-K 240
Query: 226 SGAAPVHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIII 285
S P+H+WL DA P+ ISA++ + G++ +AR+ +P P V I
Sbjct: 241 SAQFPLHVWLPDA-MEGPTPISALIHAATMVAAGVFLVARM-----YPVFEPIPVVMNTI 294
Query: 286 IF-ACITLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAI 344
F C T +G +A+ Q D+K+ LAYS++ Q+GY+++ +GIG A + +
Sbjct: 295 AFTGCFTAFLGATIALTQNDIKKGLAYSTISQLGYMVMAMGIG-----------AYSAGL 343
Query: 345 YHTVNHALMKALLFLVAGVVLHELG---------TRNLNELSGLAKTMPKTTFAFLIGAA 395
+H + HA KA+LFL +G V+H + +++ + GL K MP T FLIG
Sbjct: 344 FHLMTHAYFKAMLFLCSGSVIHGMEGVVGHDPILAQDMRIMGGLRKYMPITATCFLIGTL 403
Query: 396 AIVGMPPLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RVLF-TFFGRPSEKV 453
AI G+PP GF SK I + NPLL + TA TA Y+ R+ F TF G
Sbjct: 404 AICGIPPFAGFWSKDEILGLAFQANPLLWFVG-WATAGMTAFYMFRMYFMTFEGGFRGND 462
Query: 454 MKAKD 458
+AKD
Sbjct: 463 QEAKD 467
>emb|CAC12090.1| (AL445066) NADH dehydrogenase, chain L related protein
[Thermoplasma acidophilum]
Length = 635
Score = 192 bits (483), Expect = 8e-48
Identities = 146/521 (28%), Positives = 254/521 (48%), Gaps = 44/521 (8%)
Query: 7 IIIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREVWSGGTIVYAL-GSET 65
I I PL G +++L+ GK W+ I+ + + +F + I + + S T
Sbjct: 10 IFISPLIGF----LLTLIIGKYYRRWSGAIASFFIFLAF-IFSVITYFTVIKHPIYNSYT 64
Query: 66 PFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELG 125
F DF I I D +M ++++FVS + L+++ YMK D Y+ + G
Sbjct: 65 WFYNIDFGIYI----DNLAIVMAMMVSFVSLMIHLFAIYYMKDDPNKHVYFAETALFTAG 120
Query: 126 MLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIA 185
MLG+ I+ ++ ++F E++ + SY L+ F A K V + ++G++
Sbjct: 121 MLGLVISSNLVLLFLFWELVGLCSYLLIGFWFFKPNATAAAKKAFIVTRVGDLSFIIGMS 180
Query: 186 LLYGQY-----GTLTMGYLAVKMSENPTIVAKIALAL----FLGGLLFKSGAAPVHMWLA 236
+LY L++ YL S + K+ L + LG + KS P+H+W+
Sbjct: 181 ILYYSLINVTKDPLSIPYLISNASSIAVAIGKVRLGIIAIFILGAAIGKSAQFPLHVWIP 240
Query: 237 DAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGN 296
DA P+++SA++ + G+Y +AR +F +F A A + + I T +
Sbjct: 241 DA-MEGPTTVSALIHAATMVTAGVYLVAR-LFQVFLYAAPFAM--YAVAIVGSFTALYAG 296
Query: 297 AMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKAL 356
+ +V D+KR+LAYS++ Q+GY+L +G+ + +G +A++ ++H ++HA+ KAL
Sbjct: 297 IVGLVVNDVKRILAYSTISQLGYMLAAIGLAPI-----IGGVAVSLGMFHLISHAIFKAL 351
Query: 357 LFLVAGVVL-HELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASK-WLIYE 414
LF+ AG L + R+ ++ GL K MP TT F IG+ A+V P +G+ SK +I+
Sbjct: 352 LFMSAGAFLVAMMDLRDAKQMGGLWKRMPVTTTLFFIGSLALVAFPGTSGYFSKDPIIFA 411
Query: 415 SSALFNPLLGAIAIIGTAF-CTAAYVRVLFTF-------FGRP-SEKVMKAKDPGATMLL 465
S F L + F T + + L+TF G+P S +A+DP LL
Sbjct: 412 SYNYFTKSLSVAGFLPLLFLMTGSLLTTLYTFRMFFLVAVGKPRSTLAERARDPPIVALL 471
Query: 466 PIFILVIAIIGMGLFPWQISDKFMVPAAKSLWDIMGYVISL 506
P+ +L I + +G+ WQ+ V K D+ Y +S+
Sbjct: 472 PLMVLSIFALILGV--WQVPFYSFV---KPTLDLSPYSVSV 507
>pir||A70010 NADH dehydrogenase homolog yufT - Bacillus subtilis
>gi|1934817|emb|CAB07942.1| (Z93937) unknown [Bacillus
subtilis] >gi|2635656|emb|CAB15149.1| (Z99120) similar
to NADH dehydrogenase [Bacillus subtilis]
Length = 774
Score = 189 bits (476), Expect = 5e-47
Identities = 139/445 (31%), Positives = 218/445 (48%), Gaps = 40/445 (8%)
Query: 80 VDKFGAIMVLIITFVSFLAILYSLEYM-KHDTGLEKYYTLILILELGMLGIAITGDIFNF 138
+D G + L+IT + L LYS+ Y+ K L +Y +L+ MLG+ + ++
Sbjct: 49 IDGLGLLFALLITGIGSLVTLYSIFYLSKEKEQLGPFYVYLLMFMGAMLGVVLVDNVMVL 108
Query: 139 YVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQYGTLTMGY 198
Y+F E+ S++S+ L+ + + + K + + +L G LLY +T +
Sbjct: 109 YMFWELTSLSSFLLIGYWYKREKSRYGAAKSLLITVSGGLCMLGGFILLY----LITDSF 164
Query: 199 LAVKMSENPTIVAKI-----ALALFLGGLLFKSGAAPVHMWLADAHPAAPSSISAMLSGL 253
+M ++A A+ L L G KS P ++WL DA A P+ +SA L
Sbjct: 165 SIREMVHQVQLIAGHELFIPAMILILLGAFTKSAQFPFYIWLPDAMEA-PTPVSAYLHSA 223
Query: 254 VIKIGGIYAIARV----VFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQEDMKRLL 309
+ GIY IAR FS W WI+ + T++ G+ AV Q D+K +L
Sbjct: 224 TMVKAGIYVIARFSPIFAFSAQW--------FWIVSLVGLFTMVWGSFHAVKQTDLKSIL 275
Query: 310 AYSSVGQIGYILLGLGIGIVA--YG-SKVGEIALAGAIYHTVNHALMKALLFLVAGVVLH 366
A+S+V Q+G I+ LG+ A YG ++ +A AI+H +NHA K LF+ G++ H
Sbjct: 276 AFSTVSQLGMIISMLGVSAAALHYGHTEYYTVAAMAAIFHLINHATFKGSLFMAVGIIDH 335
Query: 367 ELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSA------LFN 420
E GTR++ +L GL MP T LIG ++ G+PP NGF SK + + S LFN
Sbjct: 336 ETGTRDIRKLGGLMAIMPITFTISLIGTFSMAGLPPFNGFLSKEMFFTSMLRVTHFDLFN 395
Query: 421 -----PLLGAIAIIGTAFCTAAYVRVLF-TFFG--RPSEKVMKAKDPGATMLLPIFILVI 472
L A IG+ F +++LF TF G +P + +A + ML+P ILV
Sbjct: 396 VQTWGVLFPLFAWIGSVFTFIYSMKLLFKTFRGNYQPEQLEKQAHEAPVGMLVPPVILVA 455
Query: 473 AIIGMGLFPWQISDKFMVPAAKSLW 497
+ + FP +S + PA S++
Sbjct: 456 LAVSLFFFPNILSYSLIEPAMNSIY 480
>emb|CAB07908.1| (Z93932) unknown [Bacillus subtilis]
Length = 480
Score = 189 bits (474), Expect = 9e-47
Identities = 136/481 (28%), Positives = 244/481 (50%), Gaps = 34/481 (7%)
Query: 8 IIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREVWSGGTIVYALGS-ETP 66
I+IP+ A + I I++T S +++ + + V++ G +LG + P
Sbjct: 9 ILIPILSAILL-IFMTKNLMLMRIFSTAASAIGIVISGILVQTVFTKGIQTLSLGGWKAP 67
Query: 67 FGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGM 126
+G IV D+F +++VL + L LYS + YY+ + L G+
Sbjct: 68 YG-------IVLAADQFASLLVLTTAIIGLLVGLYSFRSVGEKRERSFYYSGVQFLLAGV 120
Query: 127 LGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIAL 186
G +TGD+FN YVF E++ IASY L+ T + +KY+ ++S+ ++G+
Sbjct: 121 SGAFLTGDLFNMYVFFELLLIASYMLIVLG-GTKIQLRESLKYIVFNIVSSALFVIGVGF 179
Query: 187 LYGQYGTLTMGYLAVKMSENP-----TIVAKIALALFLGGLLFKSGAAPVHMWLADAHPA 241
LY GTL M L+VK+SE+ T++ + L +F G+ K G P++ WL ++ A
Sbjct: 180 LYAVTGTLNMADLSVKISESGQTGLITVIGVLLLLVF--GM--KGGIFPLYFWLPGSYYA 235
Query: 242 APSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVV 301
P++ISA+ L+ K+G +YAI RV IF + A ++I A +T+I G ++
Sbjct: 236 PPAAISALFGALLTKVG-LYAITRVFTLIF--IHDTAFTHQLMIWLAALTVIFGVIGSLA 292
Query: 302 QEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVA 361
++ +++ Y+ + +G IL G+ + A ++ GAIY+ ++ L+K LF++A
Sbjct: 293 YSNVMKIVIYNIITAVGVILFGVAVHTPA--------SIQGAIYYLIHDMLIKGALFMLA 344
Query: 362 GVVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESS-ALFN 420
G ++ GT +L+++ GL K P + F I A ++ G+PPL+GF K+ I E A
Sbjct: 345 GTLIALTGTASLHKMGGLIKRYPVLGWMFFISAISLAGIPPLSGFVGKFKIAEGGFAEGE 404
Query: 421 PLLGAIAIIGTAFCTAAYVRV-LFTFFGRPSEKVMKAKDPGATMLLP--IFILVIAIIGM 477
+ + ++ + + +R+ + F+G E +L P IF+L+ + G+
Sbjct: 405 FTISMLILLSSLLVLYSVLRIFIHAFWGEEKETPKPNHRTAKGLLYPAAIFLLLSLLFGL 464
Query: 478 G 478
G
Sbjct: 465 G 465
>gb|AAF25169.1|AF182341_1 (AF182341) NADH dehydrogenase [Buergersiochloa bambusoides]
Length = 701
Score = 189 bits (474), Expect = 9e-47
Identities = 143/466 (30%), Positives = 232/466 (49%), Gaps = 45/466 (9%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVYA 60
LP ++I+ + F + ++ + IWA ++ ++ + + + +G +I
Sbjct: 6 LPLLVIMSM--GFGLILIPTATKNLRRIWAFPSVLLLSIAMVFSVYLSIQQINGSSIYQY 63
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 64 LWSWTV--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYIS 121
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
MLG+ + ++ Y F E++ + SY L+ F A K + +
Sbjct: 122 FFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGL 181
Query: 181 LLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPVH 232
LLGI + G+L L K++ N + A LFLG + KS P+H
Sbjct: 182 LLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPLH 239
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ + GI+ +AR +F +F P P + +I ++ ITL
Sbjct: 240 VWLPDA-MEGPTPISALIHAAXMVAAGIFLLAR-LFPLFIPL--PLIMSFISLV-GTITL 294
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 295 FLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAY 343
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+PPL
Sbjct: 344 SKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIPPL 403
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 404 ACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 448
>pir||T13058 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - perennial
veldt grass chloroplast (fragment)
>gi|726156|gb|AAA64200.1| (U21996) NADH dehydrogenase F
[Ehrharta calycina]
Length = 702
Score = 188 bits (473), Expect = 1e-46
Identities = 144/466 (30%), Positives = 232/466 (48%), Gaps = 45/466 (9%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVYA 60
LP +I+P+ F + ++ + IWA ++ L+ + + + +G +I
Sbjct: 6 LPLPVIMPM--GFGLILIPTATKNLRRIWAFPSVLLLSLALVFSVHLSIQQINGSSIYQY 63
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 64 LWSWTV--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYIS 121
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
MLG+ + ++ Y F E++ + SY L+ F A K + +
Sbjct: 122 FFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGL 181
Query: 181 LLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPVH 232
LLGI + G+L L K++ N + A LFLG + KS P+H
Sbjct: 182 LLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFFLFLGAVA-KSAQFPLH 239
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ + GI+ +AR++ IF I+ + I + ITL
Sbjct: 240 VWLPDA-MEGPTPISALIHAATMVAAGIFLLARLL-PIF---ISLPLIMSFISLIGTITL 294
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +A+ Q+D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 295 FLGATLALAQKDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAY 343
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G V+H + ++N+ + GL K +P T +FL G ++ G+PPL
Sbjct: 344 SKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTSFLWGTLSLCGIPPL 403
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 404 ACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 448
>pir||T13393 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Lithachne
pauciflora chloroplast (fragment)
>gi|755847|gb|AAA64697.1| (U21978) NADH dehydrogenase F
[Lithachne pauciflora]
Length = 703
Score = 187 bits (471), Expect = 2e-46
Identities = 144/466 (30%), Positives = 232/466 (48%), Gaps = 45/466 (9%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWA-TIISFATLIVGIEVFREVW--SGGTIVYA 60
LP +I+ + F + ++ + IWA + F ++ + V+ + +G +I
Sbjct: 5 LPLPVIMSM--GFGLILIPTAIKNLRRIWAFPSVLFLSIAMVFSVYLSIQQINGSSIYQY 62
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
L S T DF + + +D +IM+++IT V L ++YS YM HD G +++ I
Sbjct: 63 LWSWTV--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDNYMSHDEGYLRFFVYIS 120
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
MLG+ I+ ++ Y F E++ + SY L+ F A K + +
Sbjct: 121 FFNTSMLGLVISSNLIQIYFFWELVGMCSYLLIGFWFTRAIAASACQKAFVTNRVGDFGL 180
Query: 181 LLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPVH 232
LLGI + G+L L K++ N + A LFLG + KS P+H
Sbjct: 181 LLGILGFFWITGSLEFRDL-FKIANNWIPDNGINSLLTTLCAFLLFLGAVA-KSAQFPLH 238
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ + GI+ +AR +F +F P P + ++ ++ ITL
Sbjct: 239 IWLPDA-MEGPTPISALIHAATMVAAGIFLLAR-LFPLFVPL--PLIMSFVSLV-GTITL 293
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 294 FLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAY 342
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G ++H + ++N+ + GL K +P T FL G ++ G+PPL
Sbjct: 343 SKALLFLGSGSIIHSMEPLVGYSPEKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPPL 402
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 403 ACFWSKDEILSNSWLYSPFFGIIAFF-TAGLTAFYMFRIYLLTFDG 447
>gb|AAF08856.1|AF194824_1 (AF194824) NADH dehydrogenase [Aptenia cordifolia]
Length = 690
Score = 187 bits (471), Expect = 2e-46
Identities = 128/397 (32%), Positives = 204/397 (51%), Gaps = 38/397 (9%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM+++IT V+ L ++YS YM HD G +++ + MLG+
Sbjct: 59 DFSLEFGYLIDSLTSIMLMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSFFNTSMLGLV 118
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI +Y
Sbjct: 119 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGIYWI 178
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFL--GGLLFKSGAAPVHMWLADAHPAA 242
G+ G L +K + N T L FL G + KS P+H+WL DA
Sbjct: 179 TGSFEFGDLFEIFNSLIKNNNNETHFLFCILCTFLLFAGAVAKSAQFPLHVWLPDA-MEG 237
Query: 243 PSSISAMLSGLVIKIGGIYAIARVV-FSIFWPAINPATVGWIIIIFACITLIVGNAMAVV 301
P+ ISA++ + GI+ +AR++ I P I ++I IT+++G +A+
Sbjct: 238 PTPISALIHAATMVAAGIFLVARLLPLFIVIPYIM-----YVISFIGIITVLLGATLALA 292
Query: 302 QEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVA 361
Q+D+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +
Sbjct: 293 QKDIKRSLAYSTMSQLGYMMLALGMG-----------SYRAALFHLITHAYSKALLFLGS 341
Query: 362 GVVLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLI 412
G ++H + T +N+ + GL + +P T AFLIG ++ G+PPL F SK I
Sbjct: 342 GSIIHSMETIVGYSPEKSQNMVLMGGLTRHVPITKTAFLIGTLSLCGIPPLACFWSKDEI 401
Query: 413 YESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
S L++P+ IA TA TA Y+ R+ L TF G
Sbjct: 402 LNDSWLYSPIFAIIAYF-TAGLTAFYMFRIYLLTFEG 437
>gb|AAA64704.1| (U21986) NADH dehydrogenase F [Panicum virgatum]
Length = 702
Score = 187 bits (470), Expect = 3e-46
Identities = 148/468 (31%), Positives = 233/468 (49%), Gaps = 49/468 (10%)
Query: 4 LPFIIIIPL-FGAFSMPIVSLLKGKAKEIWA----TIISFATLIVGIEVFREVWSGGTIV 58
LP +I+ + FG F +P + + IWA ++S A L+ + + + +G +I
Sbjct: 6 LPLPVIMSMGFGLFLIPTATK---NLRRIWAFPSILLLSIA-LVFSVHLSIQQINGSSIY 61
Query: 59 YALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTL 118
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++
Sbjct: 62 QYLWSWTI--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVY 119
Query: 119 ILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASS 178
I MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 120 ISFFNTAMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDF 179
Query: 179 FVLLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAP 230
+LLGI + G+L L K++ N + A LFLG + KS P
Sbjct: 180 GLLLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFP 237
Query: 231 VHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACI 290
+H+WL DA P+ ISA++ + GI+ +AR +F +F I+ + I + I
Sbjct: 238 LHVWLPDA-MEGPTPISALIHATTMVAAGIFLLAR-LFPLF---ISLPLIMSFISLVGTI 292
Query: 291 TLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNH 350
TL +G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + H
Sbjct: 293 TLFLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYEAALFHLITH 341
Query: 351 ALMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMP 401
A KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+P
Sbjct: 342 AYSKALLFLGSGSVIHSMESLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIP 401
Query: 402 PLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
PL F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 402 PLACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 448
>pir||S61395 probable Na+/H+-exchanging protein system component - Bacillus sp.
(strain C-125) >gi|854655|dbj|BAA06609.1| (D31823) ORF1
[Bacillus sp.] >gi|10173935|dbj|BAB05038.1| (AP001511)
Na+/H+ antiporter [Bacillus halodurans]
Length = 804
Score = 186 bits (468), Expect = 5e-46
Identities = 151/542 (27%), Positives = 247/542 (44%), Gaps = 55/542 (10%)
Query: 1 MTWLPFIIIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREVWSGGTIVYA 60
MT L + + P A +PI+ W ++ L + S G +++
Sbjct: 1 MTLLHWATVSPFLLAIFIPILYKYTRSIHTGWFVLVLPLVLFGYFLSLLPITSNGGVIHE 60
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTG-LEKYYTLI 119
P +F + VD + L+IT + L LYS+ Y+ T L +Y +
Sbjct: 61 TIPWVPSLGINFTVY----VDGLSLLFALLITGIGTLVALYSIYYLSKKTEKLNNFYVYL 116
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
L+ MLG+ ++ ++ YVF E+ S+AS L+++ + K M +
Sbjct: 117 LMFMGAMLGVVLSDNLIVLYVFWELTSLASSLLISYWFHREKSTYGAQKSMLITVFGGFA 176
Query: 180 VLLGIALLYGQYGTLTMGYLAVKMSENPTIVAKI----ALALFLGGLLFKSGAAPVHMWL 235
+L G +LLY GT ++ + + + ++A A+ L L G KS P H+WL
Sbjct: 177 MLGGFSLLYVITGTFSIREI---IEQADAVLASTLFLPAMLLVLLGAFTKSAQFPFHIWL 233
Query: 236 ADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVG-----WIIIIFACI 290
DA A P+ +SA L + G+Y +AR + P G W++ F I
Sbjct: 234 PDAMEA-PTPVSAYLHSATMVKAGLYLVAR---------LTPVFGGTPEWFWLLAGFGII 283
Query: 291 TLIVGNAMAVVQEDMKRLLAYSSVGQIGYI--LLGLGIGIVAYGS-----KVGEIALAGA 343
TL G+ AV Q+D+K +LA+S++ Q+G I L GLG + + K A A
Sbjct: 284 TLCWGSISAVRQKDLKSILAFSTISQLGLIMCLFGLGSATLHFDPTDSMIKFYATATLAA 343
Query: 344 IYHTVNHALMKALLFLVAGVVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
++H +NHA K LF+ G++ HE GTR++ +L GL MP T LIG AA+ G+PP
Sbjct: 344 VFHLINHATFKGSLFMTVGIIDHETGTRDIRKLGGLMAIMPVTFTVSLIGLAAMAGLPPF 403
Query: 404 NGFASKWLIYE------SSALFN--------PLLGAIAIIGT-AFCTAAYVRVLFTFFGR 448
NGF SK + + + +FN P+L +A + T +C + R F +
Sbjct: 404 NGFLSKEMFFSGVVTATTLGIFNMETWGFLFPVLAWVASVFTFVYCAIMFFRTFTGEFKK 463
Query: 449 PSEKVMKAKDPGATMLLPIFILVIAIIGMGLFPWQISDKFMVPAAKSLWDIMGYVISLMG 508
+ V + P ++ P+ + + +I GLFP ++ + PA + I+G + G
Sbjct: 464 ENYDVHVHEAPMGMLISPVILGSLVVI-FGLFPNLLTYTIIEPAVTA---ILG--ADVFG 517
Query: 509 GG 510
GG
Sbjct: 518 GG 519
>gb|AAG12236.1| (AF163470) NADH dehydrogenase subunit F [Eriophorum chamissonis]
Length = 696
Score = 186 bits (468), Expect = 5e-46
Identities = 143/466 (30%), Positives = 221/466 (46%), Gaps = 42/466 (9%)
Query: 4 LPFIII-IPLFGAFSMPIVSLLKGKAKEIWATIISF---ATLIVGIEVFREVWSGGTIVY 59
+PF+ + +P+ + ++ + IWA F T+I + + +G I
Sbjct: 12 IPFLSLPVPISIGLGLLLIPTATKNIRRIWAFPSIFFLIITMIFSLNFSIQQINGSLIYQ 71
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
L S T DF + + +D +IM +IT + ++YS YM HD +++ +
Sbjct: 72 YLWSWTI--NKDFSLEFGYLIDSLTSIMSALITTIGITVLIYSDNYMSHDQAYLRFFAYL 129
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
+ MLG+ + ++ Y+F EI+ I SY L+ F A K FV +L F
Sbjct: 130 NLFNASMLGLVTSSNLIQIYIFWEIVGICSYLLIGFWFTRPLAANACQK-AFVTNLVGXF 188
Query: 180 -VLLGIALLYGQYGTLTM-------GYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPV 231
+LLG Y G+ L K N LFLG + KS P+
Sbjct: 189 GLLLGXLGFYWIIGSFXFRDLFEITNNLIQKNGVNSLFTTLCTFLLFLGAIA-KSAQFPL 247
Query: 232 HMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACIT 291
H+WL DA P+ ISA++ + G++ +AR +F +F I P + II IT
Sbjct: 248 HIWLPDA-MEGPTPISALIHAATMVAAGVFLVAR-LFPLF--LITP-YIMHIISSIGLIT 302
Query: 292 LIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHA 351
L +G +A+ Q+D+KR LAYS++ Q+GYI+L LGIG + A++H + HA
Sbjct: 303 LFLGATLALAQKDIKRSLAYSTMSQLGYIILALGIG-----------SSRAALFHLITHA 351
Query: 352 LMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPP 402
KALLFL +G ++H + +N+ + GL K +P T AFL+G ++ G+PP
Sbjct: 352 YSKALLFLGSGSIIHSMEPVVGYSPDKNQNMVLMGGLTKYIPITRIAFLLGTLSLCGIPP 411
Query: 403 LNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYVRV-LFTFFG 447
L F SK I +S L +P+ G IA + T RV L TF G
Sbjct: 412 LACFWSKDEILSNSWLHSPIFGIIAYLTTGLTAFYMFRVYLLTFDG 457
>gb|AAF08863.1|AF194831_1 (AF194831) NADH dehydrogenase [Montia perfoliata]
Length = 715
Score = 186 bits (468), Expect = 5e-46
Identities = 128/394 (32%), Positives = 203/394 (51%), Gaps = 34/394 (8%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V+ L ++YS YM HD G +++ + MLG+
Sbjct: 80 DFSLEFGYLIDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSFFNTSMLGLV 139
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI +Y
Sbjct: 140 TSSNLIQIYIFWELVGMCSYLLIGFWVTRPIAANACQKAFVTNRVGDFGLLLGILGIYCI 199
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ L +K E P + + L G + KS P+H+WL DA P+
Sbjct: 200 TGSFEFRDLFEIFNNLIKNHETPFLFCILCTFLLFSGAVAKSAQFPLHVWLPDA-MEGPT 258
Query: 245 SISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQED 304
ISA++ + GI+ +AR++ +F + P + I I ITL++G +A+ Q+D
Sbjct: 259 PISALIHAATMVAAGIFLVARLL-PLF--VVIPYIMNGISFI-GIITLLLGATLALAQKD 314
Query: 305 MKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVV 364
+KR LAYS++ Q+GYI+L LGIG + A++H + HA KALLFL +G V
Sbjct: 315 IKRSLAYSTMSQLGYIMLALGIG-----------SYRAALFHLITHAYSKALLFLGSGSV 363
Query: 365 LHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES 415
+H + ++N+ + GL K +P T AFLIG ++ G+PPL F SK I
Sbjct: 364 IHSMEAIVGYSPDKSQNMVLMGGLTKHVPITKTAFLIGTLSLCGIPPLACFWSKDEILND 423
Query: 416 SALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
+ L++P+ IA + TA TA Y+ R+ L TF G
Sbjct: 424 TWLYSPIFSIIAYL-TAGLTAFYMFRIYLLTFEG 456
>pir||D64463 conserved hypothetical protein MJ1309 - Methanococcus jannaschii
>gi|1591948|gb|AAB99316.1| (U67571) carbon monoxide
dehydrogenase, hydrogenase anchor subunit CooM (cooM)
[Methanococcus jannaschii]
Length = 481
Score = 186 bits (468), Expect = 5e-46
Identities = 152/506 (30%), Positives = 247/506 (48%), Gaps = 42/506 (8%)
Query: 1 MTWLPFIIIIPLFGAFSMPIVSLLKGKAKEI-WATIISFATLIVGIEVFREVWSGGTIVY 59
M +LP +I+ PL A I++LL GK K + + T I+ A LI+ + + + Y
Sbjct: 1 MNYLPMMIVFPLIMAI---IMNLLHGKEKAVKYITFITAAILIILPFISQYGY------Y 51
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
G I ++ K AI+V + S + I E +K++ + TL
Sbjct: 52 YFGGHGVVNGWVSGIAYLYNPAK-QAIIVTLSLIASLVLITGMGEKLKNNM----FVTLS 106
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
L+ + I + DIFN YVF EI+SI LV F T E +AG++YM +G++A++
Sbjct: 107 LMGFASIAAIVLADDIFNLYVFFEIVSIVQAGLV-FLSGTEEAYKAGLRYMIMGNVAAAL 165
Query: 180 VLLGIALLYGQYGTLTMG----YLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWL 235
+LLGIA L GTL + YL V +NP I L L + GL + +G P H
Sbjct: 166 MLLGIAFLLASTGTLNITDMKHYLLV---DNPMIYG--GLLLLIVGLAYGAGLPPFHNVK 220
Query: 236 ADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVG 295
AD + + ISAML + + + ++ +F A+ ++I + ++ G
Sbjct: 221 ADLYARSKGFISAMLQTYSKFV--LVGLMIIILKLFNGLDYFASAHAVLIALGVLAMVFG 278
Query: 296 NAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKA 355
MA++Q D K+LLAY ++ Q GY+ GL +G + + I+H +NH + K+
Sbjct: 279 VVMALLQSDYKKLLAYHAISQGGYVATGLALGT--------PLGIVAGIFHAINHVIYKS 330
Query: 356 LLFLVAGVVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES 415
LFL A +V + G+ NL++L GL MP F L AI G+PP NGF SKW++ ++
Sbjct: 331 ALFLGAYIVSCKRGS-NLHKLGGLLPLMPSVAFMVLCAKLAISGIPPFNGFQSKWMLAQA 389
Query: 416 SALFN-PLLGAIAIIGTAFCTAAYVRVLFTFFGRPSE----KVMKAKDPGATMLLPIFIL 470
+ N P + I II + + ++ + + +P + K + K+ + +F+L
Sbjct: 390 AMQVNMPEIAIIMIIVSIGTFVSMMKAFYLIYLKPVDEETLKEYQNKEVPKLAVFSLFVL 449
Query: 471 VIAIIGMGLFPWQISDKFMVPAAKSL 496
I +GL+P I ++ AK L
Sbjct: 450 TALCIIIGLYP-DIVTNYLWDYAKEL 474
>pir||B70420 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoL3 -
Aquifex aeolicus >gi|2983794|gb|AAC07352.1| (AE000737)
NADH dehydrogenase I chain L [Aquifex aeolicus]
Length = 644
Score = 185 bits (466), Expect = 8e-46
Identities = 140/491 (28%), Positives = 238/491 (47%), Gaps = 42/491 (8%)
Query: 6 FIIIIPLFG-----AFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREVWSGGTIVYA 60
F+I PL AF I L G + A + + +L+V ++ I
Sbjct: 5 FVIFTPLIAFLIILAFGRKIGDLGSGIIASVGAGLTTLFSLVVALKAIHS-----PIHVK 59
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTG--LEKYYTL 118
L P G ++ + + + D ++M L++TFV+ L +YS+ YM+ + G + K+Y
Sbjct: 60 LYDFLPIG--NYTLSLGFYFDSLSSLMALVVTFVATLIFVYSIGYMRDEFGKWVFKFYAY 117
Query: 119 ILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASS 178
+ + ML I ++ ++ + E + +ASY L+ + H+ + +A + + +
Sbjct: 118 LSLFLFAMLLIVLSDNLLGIFFGWEGVGLASYLLIGYYHEQKKATKASFEAFVMNRIGDW 177
Query: 179 FVLLGIALLYGQYGTLTMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADA 238
+ GI + + TL + + K+ E +A L GG + KSG P+H WL +A
Sbjct: 178 LFIFGIIYSFYLFKTLEITQIFPKVEEVDKYALGVATMLLFGGAVGKSGQFPLHTWLPNA 237
Query: 239 HPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAM 298
A P+ +SA+L + G+Y +AR ++ +F P T+ I++I A IT+ +
Sbjct: 238 -MAGPTPVSALLHAATMVAAGVYMVAR-LYPMF--EATPQTLKLIVLIGA-ITMTMAALA 292
Query: 299 AVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLF 358
V D+K+++A+S++ Q+GY+ + LG+G GA++H HA KALLF
Sbjct: 293 GAVHNDIKKIIAFSTMSQLGYMFVALGVG-----------DKGGAMFHLTTHAFFKALLF 341
Query: 359 LVAGVVL----HELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYE 414
L AG V+ H L ++ ++ GL K MP T AF+IGA ++ G+ P +GF SK I
Sbjct: 342 LAAGAVITAFHHHL--YDIFKMGGLKKYMPVTYVAFMIGALSLAGVFPFSGFWSKDRIVA 399
Query: 415 SSALFNPLLGAIAIIGTAFCTAAYV--RVLFTFFGRPSEKVMKAKD---PGATMLLPIFI 469
S ++ +LG + I AF TA Y F GR + + KD M +P+ +
Sbjct: 400 SMYEWSGVLGVLGTI-VAFITAYYAFREGFLVFHGRERWREIYDKDVHEVEGVMTVPMGL 458
Query: 470 LVIAIIGMGLF 480
L + GLF
Sbjct: 459 LGFLTVLTGLF 469
>gb|AAF08855.1|AF194823_1 (AF194823) NADH dehydrogenase [Allionia violacea]
Length = 709
Score = 185 bits (466), Expect = 8e-46
Identities = 137/466 (29%), Positives = 232/466 (49%), Gaps = 42/466 (9%)
Query: 4 LPFIII-IPLFGAFSMPIVSLLKGKAKEIWA-TIISFATLIVGIEV---FREVWSGGTIV 58
+PFI + +PL + + + IWA + IS ++++ + +++ S
Sbjct: 11 IPFIPLPVPLLIGAGLLFFPIATKNLRRIWAFSSISLLSIVMIFSMKLSIQQINSNFIYQ 70
Query: 59 YALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTL 118
Y L DF + + +D +IM ++IT V+ L ++YS YM HD G +++
Sbjct: 71 YILSWTI---NNDFSLEFGYLIDPLASIMSILITTVAILVLIYSDNYMSHDRGYLRFFAY 127
Query: 119 ILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASS 178
+ MLG+ + ++ YVF E++ + SY L+ F A K +
Sbjct: 128 MSFFNTSMLGLVTSSNLIQIYVFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRIGDF 187
Query: 179 FVLLGIALLYGQYGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVH 232
+LLGI LY G+ G L + +E + + G + KS P+H
Sbjct: 188 GLLLGILGLYWITGSFEFGDLFQIFNNLINKNEIDLLFCILCTLFLFAGPVAKSAQFPLH 247
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ + GI+ +AR++ +F + P T+ +I + IT+
Sbjct: 248 IWLPDA-MEGPTPISALIHAATMVAAGIFLVARLL-PLF--IVVPYTMN-VISFISIITV 302
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
++G +A+ Q+D+KR LAYS++ Q+GY++L LG+G + A++H + HA
Sbjct: 303 LLGATLALAQKDIKRSLAYSTMSQLGYMMLALGMG-----------SYRAALFHLITHAY 351
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G ++H + ++N+ + GLA+ +P T AFLIG ++ G+PPL
Sbjct: 352 SKALLFLGSGSIIHSMEAIVGYSPDKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPL 411
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I S L++P+ +A TA TA Y+ R+ L TF G
Sbjct: 412 ACFWSKDEILNDSWLYSPIFAILAYF-TAGLTAFYMFRIYLLTFEG 456
>pir||G70008 NADH dehydrogenase (ubiquinone) homolog yufD - Bacillus subtilis
>gi|2635659|emb|CAB15152.1| (Z99120) similar to NADH
dehydrogenase (ubiquinone) [Bacillus subtilis]
Length = 480
Score = 185 bits (466), Expect = 8e-46
Identities = 135/481 (28%), Positives = 243/481 (50%), Gaps = 34/481 (7%)
Query: 8 IIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREVWSGGTIVYALGS-ETP 66
I+IP+ A + I I++T S +++ + + V++ G +LG + P
Sbjct: 9 ILIPILSAILL-IFMTKNLMLMRIFSTAASAIGIVISGILVQTVFTKGIQTLSLGGWKAP 67
Query: 67 FGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGM 126
+G IV D+F +++VL + L LYS + YY+ + L G+
Sbjct: 68 YG-------IVLAADQFASLLVLTTAIIGLLVGLYSFRSVGEKRERSFYYSGVQFLLAGV 120
Query: 127 LGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIAL 186
G +TGD+FN YVF E++ IASY L+ T + +KY+ ++S+ ++G+
Sbjct: 121 SGAFLTGDLFNMYVFFELLLIASYMLIVLG-GTKIQLRESLKYIVFNIVSSALFVIGVGF 179
Query: 187 LYGQYGTLTMGYLAVKMSENP-----TIVAKIALALFLGGLLFKSGAAPVHMWLADAHPA 241
LY GTL M L+VK+SE+ T++ + L +F G+ K G P++ WL ++ A
Sbjct: 180 LYAVTGTLNMADLSVKISESGQTGLITVIGVLLLLVF--GM--KGGIFPLYFWLPGSYYA 235
Query: 242 APSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVV 301
P++ISA+ L+ K+G +YAI RV IF + A ++I A +T+I G ++
Sbjct: 236 PPAAISALFGALLTKVG-LYAITRVFTLIF--IHDTAFTHQLMIWLAALTVIFGVIGSLA 292
Query: 302 QEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVA 361
++ +++ Y+ + +G IL G+ + A ++ GAIY+ ++ L+K LF++A
Sbjct: 293 YSNVMKIVIYNIITAVGVILFGVAVHTPA--------SIQGAIYYLIHDMLVKGALFMLA 344
Query: 362 GVVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESS-ALFN 420
G ++ GT +L+++ GL K P + F I A ++ G+PPL+GF K+ I E A
Sbjct: 345 GTLIALTGTASLHKMGGLIKRYPVLGWMFFISAISLAGIPPLSGFVGKFKIAEGGFAEGE 404
Query: 421 PLLGAIAIIGTAFCTAAYVRV-LFTFFGRPSEKVMKAKDPGATMLLP--IFILVIAIIGM 477
+ + ++ + + +R+ + F+G E +L P I +L+ + G+
Sbjct: 405 FTISMLILLSSLLVLYSVLRIFIHAFWGEEKETPKPNHRTAKGLLYPAAISLLLSLLFGL 464
Query: 478 G 478
G
Sbjct: 465 G 465
>pir||T12677 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - chloroplast
Avena sativa (fragment) >gi|726164|gb|AAA64204.1|
(U22000) NADH dehydrogenase F [Avena sativa]
Length = 702
Score = 185 bits (466), Expect = 8e-46
Identities = 144/467 (30%), Positives = 233/467 (49%), Gaps = 47/467 (10%)
Query: 4 LPFIIIIPL-FGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVY 59
LP +I+ + FG F +P + + IWA ++ ++ +++ + +G +I
Sbjct: 6 LPLPVIMSMGFGLFFIPTATK---NLRRIWAFPSVLLLSIAMVFSVQLSIQQINGSSIYQ 62
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
L S T DF + + +D +IM+++IT V L ++YS YM HD G +++ I
Sbjct: 63 YLWSWTV--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDGYMSHDEGYLRFFVYI 120
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 121 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 180
Query: 180 VLLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPV 231
+LLGI + G+L L K++ N + A LFLG + KS P+
Sbjct: 181 LLLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPL 238
Query: 232 HMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACIT 291
H+WL DA P+ ISA++ + GI+ +AR++ +F I+ + +I + IT
Sbjct: 239 HVWLPDA-MEGPTPISALIHAATMVAAGIFLLARLL-PLF---ISLPLIMSLISLVGTIT 293
Query: 292 LIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHA 351
L +G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 294 LFLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHA 342
Query: 352 LMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPP 402
KALLFL +G ++H + ++N+ + GL K +P T AFL G ++ G+PP
Sbjct: 343 YSKALLFLGSGSIIHSMEPLVGYSPDKSQNMVLMGGLRKYIPITRSAFLWGTLSLCGIPP 402
Query: 403 LNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
L F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 403 LACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 448
>gb|AAD26238.1| (AF117421) NADH dehydrogenase [Sorghastrum nutans]
Length = 702
Score = 185 bits (466), Expect = 8e-46
Identities = 147/468 (31%), Positives = 233/468 (49%), Gaps = 49/468 (10%)
Query: 4 LPFIIIIPL-FGAFSMPIVSLLKGKAKEIWA----TIISFATLIVGIEVFREVWSGGTIV 58
LP +I+ + FG F +P + + IWA ++S A ++ + + + +G +I
Sbjct: 6 LPLPVIMSMGFGLFLIPTATK---NLRRIWAFPSILLLSIA-MVFSLHLSIQQINGSSIY 61
Query: 59 YALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTL 118
L S T DF + + VD +IM+++IT V L ++YS +YM HD G +++
Sbjct: 62 QYLWSWTI--NNDFSLEFGYLVDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVY 119
Query: 119 ILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASS 178
I MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 120 ISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDF 179
Query: 179 FVLLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAP 230
+LLGI + G+L L K++ N + A LFLG + KS P
Sbjct: 180 GLLLGILGFFXITGSLEFRDL-FKIANNWIPNNGINSLLTTSCAFLLFLGAVA-KSAQFP 237
Query: 231 VHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACI 290
+H+WL DA P+ ISA++ + GI+ +AR++ +F I+ + I + I
Sbjct: 238 LHVWLPDA-MEGPTPISALIHAATMVAAGIFLLARLL-PLF---ISLPLIMSFISLVGTI 292
Query: 291 TLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNH 350
TL +G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + H
Sbjct: 293 TLFLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITH 341
Query: 351 ALMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMP 401
A KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+P
Sbjct: 342 AYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIP 401
Query: 402 PLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
PL F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 402 PLACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 448
>gb|AAF08858.1|AF194826_1 (AF194826) NADH dehydrogenase [Mirabilis jalapa]
Length = 688
Score = 185 bits (465), Expect = 1e-45
Identities = 124/394 (31%), Positives = 204/394 (51%), Gaps = 34/394 (8%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V+ L ++YS YM HD G +++ + MLG+
Sbjct: 59 DFSLEFGYLIDPLASIMSILITTVAILVLIYSDNYMSHDRGYLRFFAYMSFFNTSMLGLV 118
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ YVF E++ + SY L+ F A K + +LLGI LY
Sbjct: 119 TSSNLIQIYVFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRIGDFGLLLGILGLYWI 178
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ G L + +E + + G + KS P+H+WL DA P+
Sbjct: 179 TGSFEFGDLFQIFNNLINKNEIDLLFCILCTLFLFAGPVAKSAQFPLHIWLPDA-MEGPT 237
Query: 245 SISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQED 304
ISA++ + GI+ +AR++ +F + P T+ +I + IT+++G +A+ Q+D
Sbjct: 238 PISALIHAATMVAAGIFLVARLL-PLF--IVVPYTMN-VISFISIITVLLGATLALAQKD 293
Query: 305 MKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVV 364
+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +G +
Sbjct: 294 IKRSLAYSTMSQLGYMMLALGMG-----------SYRAALFHLITHAYSKALLFLGSGSI 342
Query: 365 LHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES 415
+H + ++N+ + GLA+ +P T AFLIG ++ G+PPL F SK I
Sbjct: 343 IHSMEAIVGYSPDKSQNMVLMGGLARHVPITKTAFLIGTLSLCGIPPLACFWSKDEILND 402
Query: 416 SALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
S L++P+ +A TA TA Y+ R+ L TF G
Sbjct: 403 SWLYSPIFAILAYF-TAGLTAFYMFRIYLLTFEG 435
>pir||T13391 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Lithachne
humilis chloroplast (fragment) >gi|755845|gb|AAA64696.1|
(U21977) NADH dehydrogenase F [Lithachne humilis]
Length = 706
Score = 185 bits (464), Expect = 1e-45
Identities = 144/466 (30%), Positives = 233/466 (49%), Gaps = 46/466 (9%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWA-TIISFATLIVGIEVFREVW--SGGTIVYA 60
LP +I+ + F + ++ + IWA + F ++ + V+ + +G +I
Sbjct: 6 LPLPVIMSM--GFGLILIPTAIKNLRRIWAFPSVLFLSIAMVFSVYLSIQQINGSSIYQY 63
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
L S T DF + + +D +IM+++IT V L ++YS YM HD G +++ I
Sbjct: 64 LWSWTV--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDNYMSHDEGYLRFFVYIS 121
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
MLG+ I+ ++ Y F E++ + SY L+ F A K + +
Sbjct: 122 FFNTSMLGLVISSNLIQIYFFWELVGMCSYLLIGFWFTRAIAASACQKAFVTNRVGDFGL 181
Query: 181 LLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPVH 232
LLGI + G+L L K++ N + A LFLG + KS P+H
Sbjct: 182 LLGILGFFWITGSLEFRDL-FKIANNWIPDNGINSLLTTLCAFLLFLGAVA-KSAQFPLH 239
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ ++ GI+ +AR +F +F P P + ++ ++ ITL
Sbjct: 240 IWLPDA-MEGPTPISALIHAAMV-AAGIFLLAR-LFPLFVPL--PLIMSFVSLV-GTITL 293
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 294 FLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAY 342
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G ++H + ++N+ + GL K +P T FL G ++ G+PPL
Sbjct: 343 SKALLFLGSGSIIHSMEPLVGYSPEKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPPL 402
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 403 ACFWSKDEILSNSWLYSPFFGIIAFF-TAGLTAFYMFRIYLLTFDG 447
>gi|11467252 NADH dehydrogenase ND5 [Zea mays] >gi|1171820|sp|P46620|NU5C_MAIZE
NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5, CHLOROPLAST
>gi|1363571|pir||S58612 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 5 - maize chloroplast
>gi|902281|emb|CAA60346.1| (X86563) NADH dehydrogenase
ND5 [Zea mays]
Length = 738
Score = 185 bits (464), Expect = 1e-45
Identities = 147/471 (31%), Positives = 232/471 (49%), Gaps = 55/471 (11%)
Query: 4 LPFIIIIPL-FGAFSMPIVSLLKGKAKEIWA----TIISFATLIVGIEVFREVWSGGTIV 58
LP +I+ + FG F +P + + IWA ++S A ++ + + + +G +I
Sbjct: 14 LPLPVIMSMGFGLFLIPTATK---NLRRIWAFPSILLLSIA-MVFSLHLSIQQINGSSIY 69
Query: 59 YALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTL 118
L S T DF + + VD +IM+++IT V L ++YS +YM HD G +++
Sbjct: 70 QYLWSWTI--NNDFSLEFGYLVDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVY 127
Query: 119 ILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASS 178
I MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 128 ISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDF 187
Query: 179 FVLLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAP 230
+LLGI + G+L L K++ N + A LFLG + KS P
Sbjct: 188 GLLLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFP 245
Query: 231 VHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVV---FSIFWPAINPATVGWIIIIF 287
+H+WL DA P+ ISA++ + GI+ +AR++ S+ W + I +
Sbjct: 246 LHVWLPDA-MEGPTPISALIHAATMVAAGIFLLARLLPLFISLPW-------IMSFISLI 297
Query: 288 ACITLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHT 347
ITL +G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H
Sbjct: 298 GTITLFLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHL 346
Query: 348 VNHALMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIV 398
+ HA KALLFL +G V+H + ++N+ + GL K +P T FL G ++
Sbjct: 347 ITHAYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLC 406
Query: 399 GMPPLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
G+PPL F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 407 GIPPLACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 456
>gb|AAA64192.1| (U21988) NADH dehydrogenase F [Danthoniopsis petiolata]
Length = 704
Score = 185 bits (464), Expect = 1e-45
Identities = 143/467 (30%), Positives = 230/467 (48%), Gaps = 47/467 (10%)
Query: 4 LPFIIIIPL-FGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVY 59
LP +I+ + FG F +P + + IWA ++ ++ + + + +G +I
Sbjct: 10 LPLPVIMSIGFGLFLIPTATK---NLRRIWALPSVLLLSIAMVFSVHLSIQQINGSSIYQ 66
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 67 YLWSWTI--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYI 124
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 125 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 184
Query: 180 VLLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPV 231
+LLGI + G+L L K++ N + A LFLG + KS P+
Sbjct: 185 LLLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLFAFLLFLGAIA-KSAQFPL 242
Query: 232 HMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACIT 291
H+WL DA P+ ISA++ + GI+ +AR +F +F I+ + I + IT
Sbjct: 243 HVWLPDA-MEGPTPISALIHAATMVAAGIFLLAR-LFPLF---ISLPLIMSFISLVGTIT 297
Query: 292 LIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHA 351
L +G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 298 LFLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHA 346
Query: 352 LMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPP 402
KALLFL +G ++H + ++N+ + GL K +P T FL ++ G+PP
Sbjct: 347 YSKALLFLGSGSIIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCATLSLCGIPP 406
Query: 403 LNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
L F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 407 LACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 452
>gb|AAA64203.1| (U21999) NADH dehydrogenase F [Diarrhena obovata]
Length = 705
Score = 184 bits (463), Expect = 2e-45
Identities = 142/466 (30%), Positives = 230/466 (48%), Gaps = 45/466 (9%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVYA 60
LP +I+ + F + ++ + IWA ++ ++ +++ + +G +I
Sbjct: 6 LPLPVIMSM--GFGLILIPTATKNLRRIWAFPSVLLLSIAMVFSVQLSIQQINGSSIYQY 63
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
L S T DF + + +D +IM+++IT V L ++YS YM HD G +++ I
Sbjct: 64 LWSWTI--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDGYMSHDEGYLRFFVYIS 121
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
MLG+ + ++ Y F E++ + SY L+ F A K + +
Sbjct: 122 FFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGL 181
Query: 181 LLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPVH 232
LLGI + G+L L K++ N + A LFLG + KS P+H
Sbjct: 182 LLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPLH 239
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ + GGI+ +AR++ +F I+ + I + ITL
Sbjct: 240 VWLPDA-MEGPTPISALIHAATMVAGGIFLLARLL-PLF---ISLPLIMSFISLIGTITL 294
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 295 FLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAY 343
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+PPL
Sbjct: 344 SKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYIPITRTTFLWGTLSLCGIPPL 403
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 404 ACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 448
>gi|11466844 NADH dehydrogenase ND5 [Oryza sativa]
>gi|128769|sp|P12129|NU5C_ORYSA NADH-PLASTOQUINONE
OXIDOREDUCTASE CHAIN 5, CHLOROPLAST
>gi|66190|pir||DERZN5 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 5 - rice chloroplast
>gi|12047|emb|CAA33950.1| (X15901) NADH dehydrogenase
ND5 [Oryza sativa] >gi|226667|prf||1603356CU NADH
dehydrogenase ND5 [Oryza sativa]
Length = 734
Score = 184 bits (463), Expect = 2e-45
Identities = 144/467 (30%), Positives = 231/467 (48%), Gaps = 47/467 (10%)
Query: 4 LPFIIIIPL-FGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVY 59
LP +I+ + FG F +P + + IWA ++ ++ + + + +G +I
Sbjct: 14 LPLPVIMSMGFGLFLVPTATK---NLRRIWAFPSVLLLSIAMVFSVHLSIQQINGSSIYQ 70
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 71 YLWSWTV--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYI 128
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 129 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 188
Query: 180 VLLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPV 231
+LLGI + G+L L K++ N + A LFLG + KS P+
Sbjct: 189 LLLGILGFFWITGSLEFRDL-FKIANNWIPNNEINSLLTILCAFLLFLGAVA-KSAQFPL 246
Query: 232 HMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACIT 291
H+WL DA P+ ISA++ + GI+ IAR++ +F I+ + I + +T
Sbjct: 247 HVWLPDA-MEGPTPISALIHATTMVAAGIFLIARLL-PLF---ISLPLIMSFISLIGTLT 301
Query: 292 LIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHA 351
L +G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 302 LFLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHA 350
Query: 352 LMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPP 402
KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+PP
Sbjct: 351 YSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYIPITRTCFLWGTLSLCGIPP 410
Query: 403 LNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
L F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 411 LACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 456
>gb|AAA64780.1| (U21975) NADH dehydrogenase F [Zoysia matrella]
Length = 702
Score = 184 bits (463), Expect = 2e-45
Identities = 146/467 (31%), Positives = 230/467 (48%), Gaps = 47/467 (10%)
Query: 4 LPFIIIIPL-FGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVY 59
LP +I+ + FG F +P + + IWA + L+ + + + G +I
Sbjct: 6 LPLPVIMSMGFGLFLIPTATK---NLRRIWAFPSVLFLSVALVFSVHLSIQQIKGSSIYQ 62
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 63 YLWSWTI--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYI 120
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 121 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 180
Query: 180 VLLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPV 231
+LLGI + G+L L K++ N + A LFLG + KS P+
Sbjct: 181 LLLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPL 238
Query: 232 HMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACIT 291
H+WL DA P+ ISA++ + GI+ IAR++ +F P + +I ++ IT
Sbjct: 239 HVWLPDA-MEGPTPISALIHAATMVAAGIFLIARLL-PLFRSL--PFIMSFISLV-GTIT 293
Query: 292 LIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHA 351
L +G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 294 LFLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHA 342
Query: 352 LMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPP 402
KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+PP
Sbjct: 343 YSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLKKYVPITRTTFLCGTLSLCGIPP 402
Query: 403 LNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
L F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 403 LACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 448
>gb|AAD26215.1| (AF117398) NADH dehydrogenase [Chrysopogon fulvus]
Length = 702
Score = 184 bits (463), Expect = 2e-45
Identities = 147/468 (31%), Positives = 233/468 (49%), Gaps = 49/468 (10%)
Query: 4 LPFIIIIPL-FGAFSMPIVSLLKGKAKEIWA----TIISFATLIVGIEVFREVWSGGTIV 58
LP +I+ + FG F +P + + IWA ++S A ++ + + + +G +I
Sbjct: 6 LPLPVIMSMGFGLFLIPTATK---NLRRIWAFPSILLLSIA-MVFSLHLSIQQINGSSIY 61
Query: 59 YALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTL 118
L S T DF + + VD +IM+++IT V L ++YS +YM HD G +++
Sbjct: 62 QYLWSWTI--NNDFSLEFGYLVDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVY 119
Query: 119 ILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASS 178
I MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 120 ISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDF 179
Query: 179 FVLLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAP 230
+LLGI + G+L L K++ N + A LFLG + KS P
Sbjct: 180 GLLLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFP 237
Query: 231 VHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACI 290
+H+WL DA P+ ISA++ + GI+ +AR++ +F I+ + I + I
Sbjct: 238 LHVWLPDA-MEGPTPISALIHAATMVAAGIFLLARLL-PLF---ISLPLIMSFISLVGTI 292
Query: 291 TLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNH 350
TL +G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + H
Sbjct: 293 TLFLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITH 341
Query: 351 ALMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMP 401
A KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+P
Sbjct: 342 AYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIP 401
Query: 402 PLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
PL F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 402 PLACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 448
>gb|AAD26216.1| (AF117399) NADH dehydrogenase [Chrysopogon gryllus]
Length = 702
Score = 184 bits (463), Expect = 2e-45
Identities = 147/468 (31%), Positives = 233/468 (49%), Gaps = 49/468 (10%)
Query: 4 LPFIIIIPL-FGAFSMPIVSLLKGKAKEIWA----TIISFATLIVGIEVFREVWSGGTIV 58
LP +I+ + FG F +P + + IWA ++S A ++ + + + +G +I
Sbjct: 6 LPLPVIMSMGFGLFLIPTATK---NLRRIWAFPSILLLSIA-MVFSLHLSIQQINGSSIY 61
Query: 59 YALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTL 118
L S T DF + + VD +IM+++IT V L ++YS +YM HD G +++
Sbjct: 62 QYLWSWTI--NNDFSLEFGYLVDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVY 119
Query: 119 ILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASS 178
I MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 120 ISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDF 179
Query: 179 FVLLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAP 230
+LLGI + G+L L K++ N + A LFLG + KS P
Sbjct: 180 GLLLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFP 237
Query: 231 VHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACI 290
+H+WL DA P+ ISA++ + GI+ +AR++ +F I+ + I + I
Sbjct: 238 LHVWLPDA-MEGPTPISALIHAATMVAAGIFLLARLL-PLF---ISLPLIMSFISLVGTI 292
Query: 291 TLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNH 350
TL +G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + H
Sbjct: 293 TLFLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITH 341
Query: 351 ALMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMP 401
A KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+P
Sbjct: 342 AYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIP 401
Query: 402 PLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
PL F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 402 PLACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 448
>gb|AAF08181.1| (AF130225) NADH dehydrogenase subunit F [Rhamnus davurica]
Length = 706
Score = 184 bits (463), Expect = 2e-45
Identities = 128/396 (32%), Positives = 200/396 (50%), Gaps = 38/396 (9%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IMVL+IT V + ++YS YM HD G +++ + MLG+
Sbjct: 71 DFSLEFGYLIDPLTSIMVLLITTVGIMVLIYSDNYMAHDQGYLRFFAYMSFFSTSMLGLV 130
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 131 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGFYWI 190
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+L L V +E + + L G + KS P+H+WL DA P+
Sbjct: 191 TGSLEFRDLFEIFNNVVYNNEVNFLFVTLCAFLLFAGAIAKSAQFPLHVWLPDA-MEGPT 249
Query: 245 SISAMLSGLVIKIGGIYAIARV--VFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQ 302
ISA++ + GI+ +AR+ +F + +N II + ITL +G A+VQ
Sbjct: 250 PISALIHAATMVAAGIFLVARLLPLFIVIPYIMN------IIALIGIITLFLGATFALVQ 303
Query: 303 EDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAG 362
+D+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +G
Sbjct: 304 KDIKRGLAYSTMSQLGYMMLALGMG-----------SYRAALFHLITHAYSKALLFLGSG 352
Query: 363 VVLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIY 413
++H + T +N+ + GL K +P T AFL+G ++ G+PPL F SK I
Sbjct: 353 SIIHSMETIVGYSPNKSQNMVLMGGLRKHVPITKTAFLLGTLSLCGIPPLACFWSKDEIL 412
Query: 414 ESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
S L++P+ IA TA TA Y+ R+ L TF G
Sbjct: 413 NDSWLYSPIFAIIACY-TAGLTAFYMFRIYLLTFEG 447
>gb|AAD26236.1| (AF117419) NADH dehydrogenase [Rattraya petiolata]
Length = 702
Score = 184 bits (463), Expect = 2e-45
Identities = 144/467 (30%), Positives = 231/467 (48%), Gaps = 47/467 (10%)
Query: 4 LPFIIIIPL-FGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVY 59
LP +I+ + FG F +P + + IWA ++ TL+ + + + +G +I
Sbjct: 6 LPLPVIMSMGFGLFLIPTATK---NLRRIWAFPSILLLSITLVFSVHLSIQQINGSSIYQ 62
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 63 YLWSWTI--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYI 120
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 121 SFFNTAMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 180
Query: 180 VLLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPV 231
+LLGI + G+L L K++ N + A LFLG + KS P+
Sbjct: 181 LLLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPL 238
Query: 232 HMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACIT 291
H+WL DA P+ ISA++ + GI+ +AR++ +F I+ + I + IT
Sbjct: 239 HVWLPDA-MEGPTPISALIHAATMVAAGIFLLARLL-PLF---ISLPLIMSFISLVGTIT 293
Query: 292 LIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHA 351
L +G +A+ Q D+KR L YS++ Q+GY++L LGIG + A++H + HA
Sbjct: 294 LFLGATLALAQXDIKRSLXYSTMSQLGYMMLALGIG-----------SYEAALFHLITHA 342
Query: 352 LMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPP 402
KALLFL +G ++H + ++N+ + GL K +P T FL G ++ G+PP
Sbjct: 343 YSKALLFLGSGSIIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRGTFLCGTLSLCGIPP 402
Query: 403 LNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
L F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 403 LACFWSKDEILSNSWLYSPFFGMIASF-TAGLTAFYMFRIYLLTFDG 448
>sp|Q33066|NU5C_SORBI NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5, CHLOROPLAST
>gi|755851|gb|AAA64699.1| (U21981) NADH dehydrogenase F
[Sorghum bicolor] >gi|4588864|gb|AAD26241.1| (AF117424)
NADH dehydrogenase [Sorghum halepense]
Length = 702
Score = 184 bits (463), Expect = 2e-45
Identities = 147/468 (31%), Positives = 233/468 (49%), Gaps = 49/468 (10%)
Query: 4 LPFIIIIPL-FGAFSMPIVSLLKGKAKEIWA----TIISFATLIVGIEVFREVWSGGTIV 58
LP +I+ + FG F +P + + IWA ++S A ++ + + + +G +I
Sbjct: 6 LPLPVIMSMGFGLFLIPTATK---NLRRIWAFPSILLLSIA-MVFSLHLSIQQINGSSIY 61
Query: 59 YALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTL 118
L S T DF + + VD +IM+++IT V L ++YS +YM HD G +++
Sbjct: 62 QYLWSWTI--NNDFSLEFGYLVDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVY 119
Query: 119 ILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASS 178
I MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 120 ISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDF 179
Query: 179 FVLLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAP 230
+LLGI + G+L L K++ N + A LFLG + KS P
Sbjct: 180 GLLLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFP 237
Query: 231 VHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACI 290
+H+WL DA P+ ISA++ + GI+ +AR++ +F I+ + I + I
Sbjct: 238 LHVWLPDA-MEGPTPISALIHAATMVAAGIFLLARLL-PLF---ISLPLIMSFISLVGTI 292
Query: 291 TLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNH 350
TL +G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + H
Sbjct: 293 TLFLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITH 341
Query: 351 ALMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMP 401
A KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+P
Sbjct: 342 AYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIP 401
Query: 402 PLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
PL F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 402 PLACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 448
>gi|11467868 subunit 5 of NADH-plastoquinoneoxidoreductase [Nephroselmis
olivacea] >gi|5880797|gb|AAD54890.1|AF137379_113
(AF137379) subunit 5 of NADH-plastoquinoneoxidoreductase
[Nephroselmis olivacea]
Length = 648
Score = 184 bits (463), Expect = 2e-45
Identities = 134/426 (31%), Positives = 210/426 (48%), Gaps = 36/426 (8%)
Query: 72 FPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIAI 131
F + I + VD + M++++T V+ L ++YS EYM D G +++ + I MLG+ +
Sbjct: 81 FRLEIGYWVDPLTSTMLVVVTSVALLVMIYSDEYMHVDEGYVRFFVYLSIFTTSMLGLVL 140
Query: 132 TGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQY 191
+ ++ Y F E++ + SY LV F EA K + +LLGI LY
Sbjct: 141 SPNLVQVYGFWELVGMCSYLLVGFWFTRPTAAEASQKAFITNRVGDFGLLLGILALYWMT 200
Query: 192 GTLTMGYLAVKMSE------NPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPSS 245
G+ +A ++ + + +A IA L G + KS P+H+WL DA P+
Sbjct: 201 GSFEFASIADRLGDLLIAIPSLRTIACIACILVFMGPIAKSAQFPLHVWLPDA-MEGPTP 259
Query: 246 ISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQEDM 305
ISA++ + G++ +AR +F +F V +I +T +G MA+ Q D+
Sbjct: 260 ISALIHAATMVAAGVFLVAR-MFPVF---DQLPLVMELIAWTGTLTAFLGATMALTQSDI 315
Query: 306 KRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVVL 365
K+ LAYS++ Q+GY+++ LG G A + A++H HA KALLFL AG V+
Sbjct: 316 KKGLAYSTMSQLGYMIMALGTG-----------AYSEALFHLTTHAYSKALLFLAAGSVI 364
Query: 366 H---------ELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESS 416
H + +N++ + GL K MP T FL+G +I G+PPL F SK I
Sbjct: 365 HGMEPVVGFSPMQNQNMHRMGGLRKYMPLTAMTFLLGTCSICGIPPLACFWSKDAILAEV 424
Query: 417 ALFNPLLGAIAIIGTAFCTAAYV-RVLF-TFFG--RPSEKVMKAKDPGATMLLPIFILVI 472
+P IA + TA T Y+ R+ F TF G R K K+ M+ P+ IL I
Sbjct: 425 FATHPTCWLIAWL-TAGMTGFYMFRIYFLTFEGSFRSDLGRAKPKESHLGMVAPLIILAI 483
Query: 473 AIIGMG 478
+ +G
Sbjct: 484 PTVAIG 489
>gb|AAF79002.1| (L75909) NADH dehydrogenase F [Vriesea triligulata]
Length = 691
Score = 184 bits (463), Expect = 2e-45
Identities = 125/394 (31%), Positives = 206/394 (51%), Gaps = 34/394 (8%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V + ++YS +YM HD G +++ + MLG+
Sbjct: 69 DFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDKYMYHDQGYLRFFAYMSFFNTSMLGLV 128
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 129 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWI 188
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+L YL ++ + ++ A + +L G + KS P+H+WL DA P+
Sbjct: 189 TGSLEFRYLLEITNNLIQNNGVNSLFATLCASLLFVGAVAKSAQFPLHVWLPDA-MEGPT 247
Query: 245 SISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQED 304
ISA++ + GI+ +AR++ +F + P + +I +I ITL++G +A+ Q D
Sbjct: 248 PISALIHAATMVAAGIFLVARLL-PLF--IVIPYIMNFISLI-GVITLLLGATLALAQRD 303
Query: 305 MKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVV 364
+K+ LAYS++ Q+GYI+L LGIG + A++H + HA KALLFL +G +
Sbjct: 304 IKKSLAYSTMSQLGYIMLALGIG-----------SYRAALFHLITHAYSKALLFLGSGSI 352
Query: 365 LHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES 415
+H + ++N+ + GLA+ +P T FL+G ++ G+PPL F SK I
Sbjct: 353 IHSMEPIVGYSPDKSQNMVLMGGLARYVPITRTTFLLGTLSLCGIPPLACFWSKDDILND 412
Query: 416 SALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
S L++P+ IA TA TA Y+ RV L TF G
Sbjct: 413 SWLYSPIFAVIAYF-TAGLTAFYMFRVYLLTFDG 445
>gb|AAF79008.1| (L75936) NADH dehydrogenase F [Tillandsia hamaleana]
Length = 691
Score = 184 bits (463), Expect = 2e-45
Identities = 132/452 (29%), Positives = 226/452 (49%), Gaps = 39/452 (8%)
Query: 16 FSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVYALGSETPFGKADF 72
F + ++ + +WA ++ ++ + + + +G I L S T DF
Sbjct: 13 FGLLLIPTATKNIRRMWAFPSVLLLSIAMVFSVNLSIQQINGSFIYQYLWSWTI--NNDF 70
Query: 73 PIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIAIT 132
+ + +D +IM ++IT V + ++YS +YM HD G +++ + MLG+ +
Sbjct: 71 SLEFGYLIDPLTSIMSILITTVGIMVLIYSDKYMYHDQGYLRFFAYMSFFNTSMLGLVTS 130
Query: 133 GDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQYG 192
++ Y+F E++ + SY L+ F A K + +LLGI Y G
Sbjct: 131 SNLIQIYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWITG 190
Query: 193 TLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPSSI 246
+L YL ++ + ++ A + +L G + KS P+H+WL DA P+ I
Sbjct: 191 SLEFRYLLEITNNLIQNNGVNSLFATLCASLLFVGAVAKSAQFPLHVWLPDA-MEGPTPI 249
Query: 247 SAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQEDMK 306
SA++ + GI+ +AR++ +F + P + +I +I ITL++G +A+ Q D+K
Sbjct: 250 SALIHAATMVAAGIFLVARLL-PLF--IVIPYIMNFISLI-GVITLLLGATLALAQRDIK 305
Query: 307 RLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVVLH 366
+ LAYS++ Q+GYI+L LGIG + A++H + HA KALLFL +G ++H
Sbjct: 306 KSLAYSTMSQLGYIMLALGIG-----------SYRAALFHLITHAYSKALLFLGSGSIIH 354
Query: 367 EL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSA 417
+ ++N+ + GL + +P T FL+G ++ G+PPL F SK I S
Sbjct: 355 SMEPIVGYSPDKSQNMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFXSKDDILNDSW 414
Query: 418 LFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
L++P+ IA TA TA Y+ RV L TF G
Sbjct: 415 LYSPIFAVIAYF-TAGLTAFYMFRVYLLTFDG 445
>gb|AAF79012.1| (L75879) NADH dehydrogenase F [Tillandsia dodsonii]
Length = 693
Score = 184 bits (463), Expect = 2e-45
Identities = 133/452 (29%), Positives = 226/452 (49%), Gaps = 39/452 (8%)
Query: 16 FSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVYALGSETPFGKADF 72
F + ++ + +WA ++ ++ + + + +G I L S T DF
Sbjct: 13 FXLLLIPTATKNIRRMWAFPSVLLLSIAMVFSVNLSIQQINGSFIYQYLWSWTI--NNDF 70
Query: 73 PIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIAIT 132
+ + +D +IM ++IT V + ++YS +YM HD G +++ + MLG+ +
Sbjct: 71 SLEFGYLIDPLTSIMSILITTVGIMVLIYSDKYMYHDQGYLRFFAYMSFFNTSMLGLVTS 130
Query: 133 GDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQYG 192
++ Y+F E++ + SY L+ F A K + +LLGI Y G
Sbjct: 131 SNLIQIYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWITG 190
Query: 193 TLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPSSI 246
TL YL ++ + ++ A + +L G + KS P+H+WL DA P+ I
Sbjct: 191 TLEFRYLLEITNNLIQNNGVNSLFATLCASLLFVGAVAKSAQFPLHVWLPDA-MEGPTPI 249
Query: 247 SAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQEDMK 306
SA++ + GI+ +AR++ +F + P + +I +I ITL++G +A+ Q D+K
Sbjct: 250 SALIHXATMVAAGIFLVARLL-PLF--IVIPYIMNFISLI-GVITLLLGATLALAQRDIK 305
Query: 307 RLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVVLH 366
+ LAYS++ Q+GYI+L LGIG + A++H + HA KALLFL +G ++H
Sbjct: 306 KSLAYSTMSQLGYIMLALGIG-----------SYRAALFHLITHAYSKALLFLGSGSIIH 354
Query: 367 EL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSA 417
+ ++N+ + GL + +P T FL+G ++ G+PPL F SK I S
Sbjct: 355 SMEPIVGYSPDKSQNMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSKDDILNDSW 414
Query: 418 LFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
L++P+ IA TA TA Y+ RV L TF G
Sbjct: 415 LYSPIFAVIAYF-TAGLTAFYMFRVYLLTFDG 445
>gb|AAD26248.1| (AF117431) NADH dehydrogenase [Sorghum timorense]
Length = 702
Score = 184 bits (463), Expect = 2e-45
Identities = 147/468 (31%), Positives = 233/468 (49%), Gaps = 49/468 (10%)
Query: 4 LPFIIIIPL-FGAFSMPIVSLLKGKAKEIWA----TIISFATLIVGIEVFREVWSGGTIV 58
LP +I+ + FG F +P + + IWA ++S A ++ + + + +G +I
Sbjct: 6 LPLPVIMSMGFGLFLIPTATK---NLRRIWAFPSILLLSIA-MVFSLHLSIQQINGSSIY 61
Query: 59 YALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTL 118
L S T DF + + VD +IM+++IT V L ++YS +YM HD G +++
Sbjct: 62 QYLWSWTI--NNDFSLEFGYLVDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVY 119
Query: 119 ILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASS 178
I MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 120 ISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDF 179
Query: 179 FVLLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAP 230
+LLGI + G+L L K++ N + A LFLG + KS P
Sbjct: 180 GLLLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFP 237
Query: 231 VHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACI 290
+H+WL DA P+ ISA++ + GI+ +AR++ +F I+ + I + I
Sbjct: 238 LHVWLPDA-MEGPTPISALIHAATMVAAGIFLLARLL-PLF---ISLPLIMSFISLVGTI 292
Query: 291 TLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNH 350
TL +G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + H
Sbjct: 293 TLFLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITH 341
Query: 351 ALMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMP 401
A KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+P
Sbjct: 342 AYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIP 401
Query: 402 PLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
PL F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 402 PLACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 448
>gb|AAF08133.1| (AF130177) NADH dehydrogenase subunit F [Ipomoea batatas]
Length = 719
Score = 184 bits (462), Expect = 2e-45
Identities = 128/399 (32%), Positives = 203/399 (50%), Gaps = 38/399 (9%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + +D +IM ++IT V + ++YS YM HD G +++ + MLG+
Sbjct: 80 DFSFEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMAHDQGYLRFFAYMSFFCAAMLGLV 139
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF-VLLGIALLYG 189
+ + Y+F E++ + SY L+ F T G + FV + F +LLGI Y
Sbjct: 140 TSSNFIQIYIFWELVGLCSYLLIGFWF-TRPGAANACEKAFVTNRVGDFGLLLGILGFYW 198
Query: 190 QYGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAP 243
G+ L + E + + AL G + KS P+H+WL DA P
Sbjct: 199 ITGSFEFRELFQILNNLISSKEVNFLFVTLCAALLFVGAIAKSAQFPLHVWLPDA-MEGP 257
Query: 244 SSISAMLSGLVIKIGGIYAIARVV-FSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQ 302
+ ISA++ + GI+ +AR++ + P+I ++I + IT+++G +A+ Q
Sbjct: 258 TPISALIHAATLVAAGIFLVARLLPLFLVIPSIM-----YLISLIGIITVLLGATLALAQ 312
Query: 303 EDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAG 362
+D+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL AG
Sbjct: 313 QDIKRGLAYSTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSKALLFLAAG 361
Query: 363 VVLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIY 413
V+H + T +N+ + GL K +P T AFL+G ++ G+PPL F SK I
Sbjct: 362 SVIHSMETLIGYSPDKSQNMVLMGGLTKHVPITKSAFLLGTLSLCGIPPLACFWSKDEIL 421
Query: 414 ESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFGRPS 450
S L++P+ IA GT TA Y+ R+ L TF G S
Sbjct: 422 NDSWLYSPIFALIA-WGTVGLTAFYMFRIYLMTFEGHLS 459
>pir||T12213 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Androya
decaryi chloroplast (fragment)
>gi|2605745|gb|AAB84404.1| (AF027276) NADH dehydrogenase
[Androya decaryi]
Length = 733
Score = 184 bits (462), Expect = 2e-45
Identities = 124/394 (31%), Positives = 204/394 (51%), Gaps = 34/394 (8%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V + ++YS YM HD G +++ + MLG+
Sbjct: 80 DFSLEFGYLIDPLTSIMSMLITTVGIMVLIYSDNYMAHDQGYLRFFAYMSFFSTSMLGLV 139
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 140 TSSNLIQIYIFWELVGMCSYLLIGFWFTRTPAANACQKAFVTNRVGDFGLLLGILGFYWI 199
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ G L + +E + + AL G + KS P+H+WL DA P+
Sbjct: 200 TGSFEFGDLFEIFNNLIYNNEVNSTFISLCAALLFAGAVAKSAQFPLHVWLPDA-MEGPT 258
Query: 245 SISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQED 304
ISA++ + GI+ +AR++ +F + P + +I +I IT+++G +A+ Q+D
Sbjct: 259 PISALIHAATMVAAGIFLVARLL-PLF--IVIPYIMNFISLI-GIITVLLGATLALAQKD 314
Query: 305 MKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVV 364
+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +G V
Sbjct: 315 IKRGLAYSTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSKALLFLGSGSV 363
Query: 365 LHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES 415
+H + T +N+ + GL K +P T +FL+G ++ G+PPL F SK I
Sbjct: 364 IHSMETIVGYSPDKSQNMVLMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSKDEILND 423
Query: 416 SALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
S L++P+ IA + TA TA Y+ R+ L TF G
Sbjct: 424 SWLYSPIFAIIAWV-TAGLTAFYMFRIYLLTFEG 456
>gb|AAF08142.1| (AF130186) NADH dehydrogenase subunit F [Cyananthus microphyllus]
Length = 696
Score = 184 bits (462), Expect = 2e-45
Identities = 128/395 (32%), Positives = 205/395 (51%), Gaps = 36/395 (9%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM+++IT V L ++YS YM +D G ++++ + MLG+
Sbjct: 71 DFSLEFGYLIDPLTSIMLILITTVGILVLIYSDNYMFYDRGYLRFFSYMSFFSTSMLGLV 130
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ I SY L+ F A K + +LLGI Y
Sbjct: 131 TSSNLIQIYIFWELVGICSYLLIGFWFTRPVAANACQKAFITNRVGDFGLLLGILGFYWI 190
Query: 191 YGT-------LTMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAP 243
G+ L L N V A+ LF G + KS P+H+WL DA P
Sbjct: 191 TGSFEFRDLFLIFNNLIYNNEVNLLFVTLCAILLF-SGAVAKSAQFPLHVWLPDA-MEGP 248
Query: 244 SSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQE 303
+ ISA++ + GI+ +AR++ +F + P + +I +I IT+ +G +A+ Q+
Sbjct: 249 TPISALIHAATMVAAGIFLVARLL-PLF--IVIPHIMNFISLI-GIITVFLGATLALAQK 304
Query: 304 DMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGV 363
D+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +G
Sbjct: 305 DIKRGLAYSTMSQLGYMMLALGMG-----------SFRSALFHLITHAYSKALLFLGSGS 353
Query: 364 VLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYE 414
++H + T +N+ + GL K +P T FL+G ++ G+PPL F SK I
Sbjct: 354 IIHSMQTIVGYSPNKSQNMVFMGGLTKHVPITKTTFLLGTLSLCGIPPLACFWSKDEILN 413
Query: 415 SSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
S L++P+LG IA+ TA TA Y+ R+ L TF G
Sbjct: 414 DSWLYSPILGIIALF-TAGLTAFYMFRIYLLTFEG 447
>gb|AAA64201.1| (U21997) NADH dehydrogenase F [Phragmites australis]
Length = 706
Score = 184 bits (462), Expect = 2e-45
Identities = 144/467 (30%), Positives = 231/467 (48%), Gaps = 47/467 (10%)
Query: 4 LPFIIIIPL-FGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVY 59
LP +I+ + FG F +P + + IWA ++ ++ + + + +G +I
Sbjct: 8 LPLPVIMSMGFGLFLIPTATK---NLRRIWAFPSVLLLSIAMVFSVHLSIQQINGSSIYQ 64
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 65 YLWSWTI--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYI 122
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 123 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 182
Query: 180 VLLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPV 231
+LLGI + G+L L K++ N + A LFLG + KS P+
Sbjct: 183 LLLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPL 240
Query: 232 HMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACIT 291
H+WL DA P+ ISA++ + GI+ +AR++ +F I+ + I + IT
Sbjct: 241 HVWLPDA-MEGPTPISALIHAATMVAAGIFLLARLL-PLF---ISLPLIMSFISLVGTIT 295
Query: 292 LIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHA 351
L +G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 296 LFLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHA 344
Query: 352 LMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPP 402
KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+PP
Sbjct: 345 YSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPP 404
Query: 403 LNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
L F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 405 LACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 450
>gb|AAF08861.1|AF194829_1 (AF194829) NADH dehydrogenase [Tetragonia tetragonioides]
Length = 689
Score = 184 bits (462), Expect = 2e-45
Identities = 122/396 (30%), Positives = 202/396 (50%), Gaps = 38/396 (9%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + + +D +IM ++IT V+ L ++YS YM HD G +++ + MLG+
Sbjct: 58 DFSLELGYFIDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSFFNTSMLGLV 117
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI LY
Sbjct: 118 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRIGDFGLLLGILGLYWI 177
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ G L + +E + + G + KS P+H+WL DA P+
Sbjct: 178 TGSFEFGDLFEIFNSLINNNETHFLFCILCAFFLFAGAVAKSAQFPLHVWLPDAMEG-PT 236
Query: 245 SISAMLSGLVIKIGGIYAIARVV--FSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQ 302
ISA++ + GI+ +AR++ F++ + +II IT+++G +A+ Q
Sbjct: 237 PISALIHAATMVAAGIFLVARLLPLFTVI------PYIMYIISFIGIITVLLGATLALAQ 290
Query: 303 EDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAG 362
+D+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +G
Sbjct: 291 KDIKRSLAYSTMSQLGYMMLALGMG-----------SYRAALFHLITHAYSKALLFLGSG 339
Query: 363 VVLHELG---------TRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIY 413
++H + ++N+ + GL + +P T AFLIG ++ G+PPL F SK I
Sbjct: 340 SIIHSMEAIVGYSPDKSQNMVLMGGLTRHVPITKTAFLIGTLSLCGIPPLACFWSKDEIL 399
Query: 414 ESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
S L++P+ IA TA TA Y+ R+ L TF G
Sbjct: 400 NDSWLYSPIFAIIAYF-TAGLTAFYMFRIYLLTFEG 434
>gb|AAF08176.1| (AF130220) NADH dehydrogenase subunit F [Cornus florida]
Length = 745
Score = 184 bits (462), Expect = 2e-45
Identities = 134/468 (28%), Positives = 232/468 (48%), Gaps = 46/468 (9%)
Query: 4 LPFIII-IPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVY 59
+PFI + +P+ + + + IWA ++ +I I++ + + +I
Sbjct: 11 IPFIPLPVPMLIGVGLLLFPTATKNLRRIWAFPSVLLLSIVMIFSIDLSIQQMNSSSIYQ 70
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
+ S DF + + + +D +IM ++IT V + ++YS YM HD G +++ +
Sbjct: 71 YVWSWII--NNDFSLELGYVIDPLTSIMSILITSVGIMVLIYSDNYMSHDQGYLRFFAYM 128
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
MLG+ + ++ Y+F E++ + SY L+ F A K +
Sbjct: 129 SFFSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPVAATACQKAFVTNRVGDFG 188
Query: 180 VLLGIALLYGQYGTL-------TMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVH 232
+LLGI Y G+ + L VK N + + A+ +F G + KS P+H
Sbjct: 189 LLLGILGFYWITGSFEFRDLFEIVNNLIVKNEVNLSFITVCAVLVFAGAVA-KSAQFPLH 247
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARV--VFSIFWPAINPATVGWIIIIFACI 290
+WL DA P+ ISA++ + G++ +AR+ +F++ +N +I + I
Sbjct: 248 VWLPDA-MEGPTPISALIHAATMVAAGVFIVARLLPLFTVIPYILN------LISLIGII 300
Query: 291 TLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNH 350
T+++G +A+ Q+D+KR LAYS++ Q+GY++L LG+G + A++H + H
Sbjct: 301 TVLLGATLALAQKDIKRSLAYSTMSQLGYMMLALGMG-----------SYRTALFHLITH 349
Query: 351 ALMKALLFLVAGVVLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMP 401
A KALLFL +G V+H + T +N+ + GL K +P T +FL+G ++ G+P
Sbjct: 350 AYSKALLFLGSGSVIHSMETIVGYSPDKSQNMVLMGGLRKHVPITKISFLLGTLSLCGIP 409
Query: 402 PLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
PL F SK I S L++P+ IA TA TA Y+ R+ L TF G
Sbjct: 410 PLACFWSKDEILNDSWLYSPIFAIIA-CSTAGLTAFYMFRIYLLTFEG 456
>sp|Q32880|NU5C_POAPR NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5, CHLOROPLAST
>gi|7520422|pir||T13655 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 5 - Kentucky bluegrass chloroplast
(fragment) >gi|755849|gb|AAA64698.1| (U21980) NADH
dehydrogenase F [Poa pratensis]
Length = 702
Score = 184 bits (462), Expect = 2e-45
Identities = 140/457 (30%), Positives = 224/457 (48%), Gaps = 45/457 (9%)
Query: 4 LPFIIIIPL-FGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVY 59
LP +I+ + FG F +P + + IWA + ++ + + + +G +I
Sbjct: 6 LPLPVIMSMGFGLFFIPTATK---NLRRIWAFPSVLFLSIAIVYSVHLSIQQINGSSIYQ 62
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
L S T DF + + +D +IM+++IT V L ++YS YM HD G +++ I
Sbjct: 63 YLWSWTV--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDGYMSHDEGYLRFFVYI 120
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 121 SFFTTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 180
Query: 180 VLLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPV 231
+LLGI + G+L L K++ N + A LFLG + KS P+
Sbjct: 181 LLLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPL 238
Query: 232 HMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACIT 291
H+WL DA P+ ISA++ + GI+ +AR +F +F I+ + +I + IT
Sbjct: 239 HVWLPDA-MEGPTPISALIHAATMVAAGIFLLAR-LFPLF---ISIPLIMTLISLVGTIT 293
Query: 292 LIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHA 351
L +G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 294 LFLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHA 342
Query: 352 LMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPP 402
KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+PP
Sbjct: 343 YSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYIPITRTTFLWGTLSLCGIPP 402
Query: 403 LNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV 439
L F SK I +S L++P G IA TA TA Y+
Sbjct: 403 LACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYM 438
>gb|AAF08887.1|AF194856_1 (AF194856) NADH dehydrogenase [Claytonia virginica]
Length = 690
Score = 184 bits (462), Expect = 2e-45
Identities = 127/394 (32%), Positives = 203/394 (51%), Gaps = 34/394 (8%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V+ L ++YS YM HD G +++ + MLG+
Sbjct: 60 DFSLEFGYLIDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSFFNTSMLGLV 119
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI +Y
Sbjct: 120 TSSNLIQIYIFWELVGMCSYLLIGFWVTRPIAANACQKAFVTNRIGDFGLLLGILGIYCI 179
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ L +K +E + + L G + KS P+H+WL DA P+
Sbjct: 180 TGSFEFRDLFEIFNNLIKNNETHFLFCILCTFLLFSGAVAKSAQFPLHVWLPDA-MEGPT 238
Query: 245 SISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQED 304
ISA++ + GI+ +AR++ +F + P + I I ITL++G +A+ Q+D
Sbjct: 239 PISALIHAATMVAAGIFLVARLL-PLF--VVIPYIMNGISFI-GIITLLLGATLALAQKD 294
Query: 305 MKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVV 364
+KR LAYS++ Q+GYI+L LGIG + A++H + HA KALLFL +G V
Sbjct: 295 IKRSLAYSTMSQLGYIMLALGIG-----------SYRAALFHLITHAYSKALLFLGSGSV 343
Query: 365 LHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES 415
+H + ++N+ + GL K +P T AFLIG ++ G+PPL F SK I
Sbjct: 344 IHSMEAVVGYSPDKSQNMVLMGGLTKHVPITKTAFLIGTLSLCGIPPLACFWSKDEILND 403
Query: 416 SALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
+ L++P+ IA + TA TA Y+ R+ L TF G
Sbjct: 404 TWLYSPIFSIIAYL-TAGLTAFYMFRIYLLTFEG 436
>gb|AAF25182.1|AF182354_1 (AF182354) NADH dehydrogenase [Pariana radiciflora]
Length = 702
Score = 184 bits (462), Expect = 2e-45
Identities = 144/466 (30%), Positives = 231/466 (48%), Gaps = 45/466 (9%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWA-TIISFATLIVGIEVFREVW--SGGTIVYA 60
LP +I+ + F + ++ + IWA + F ++ + V+ + +G +I
Sbjct: 6 LPLPVIMSM--GFGLILIPTATKNLRRIWAFPSVLFLSIAMVFSVYLSIQQINGSSIYQY 63
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
L S T DF + + +D +IM+++IT V L ++YS +YM +D G +++ I
Sbjct: 64 LWSWTV--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSYDEGYLRFFVYIS 121
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
MLG+ I+ ++ Y F E++ + SY L+ F A K + +
Sbjct: 122 FFNTSMLGLVISSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRIGDFGL 181
Query: 181 LLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPVH 232
LLGI + G+L L K++ N + A LFLG + KS P+H
Sbjct: 182 LLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPLH 239
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ + GI+ +AR +F +F I+ + I + ITL
Sbjct: 240 VWLPDA-MEGPTPISALIHAAXMVAAGIFLLAR-LFPLF---ISLPLIMSFISLVGTITL 294
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 295 FLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAY 343
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+PPL
Sbjct: 344 SKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYIPITRTTFLWGTLSLCGIPPL 403
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 404 ACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 448
>emb|CAB65660.1| (AJ236243) NADH dehydrogenase subunit F [Convolvulus arvensis]
Length = 671
Score = 184 bits (462), Expect = 2e-45
Identities = 128/399 (32%), Positives = 203/399 (50%), Gaps = 38/399 (9%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + +D +IM ++IT V + ++YS YM HD G +++ + MLG+
Sbjct: 76 DFSFEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMAHDQGYLRFFAYMSFFCAAMLGLV 135
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF-VLLGIALLYG 189
+ + Y+F E++ + SY L+ F T G + FV + F +LLGI Y
Sbjct: 136 TSSNFIQIYIFWELVGLCSYLLIGFWF-TRPGAANACEKAFVTNRVGDFGLLLGILGFYW 194
Query: 190 QYGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAP 243
G+ L + E + + AL G + KS P+H+WL DA P
Sbjct: 195 ITGSFEFRELFQILNNLISSKEVNFLFVTLCAALLFVGAIAKSAQFPLHVWLPDA-MEGP 253
Query: 244 SSISAMLSGLVIKIGGIYAIARVV-FSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQ 302
+ ISA++ + GI+ +AR++ + P+I ++I + IT+++G +A+ Q
Sbjct: 254 TPISALIHAATLVAAGIFLVARLLPLFLVIPSIM-----YLISLIGIITVLLGATLALAQ 308
Query: 303 EDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAG 362
+D+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL AG
Sbjct: 309 QDIKRGLAYSTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSKALLFLAAG 357
Query: 363 VVLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIY 413
V+H + T +N+ + GL K +P T AFL+G ++ G+PPL F SK I
Sbjct: 358 SVIHSMETIIGYSPDKSQNMVLMGGLTKYVPITKSAFLLGTLSLCGIPPLACFWSKDEIL 417
Query: 414 ESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFGRPS 450
S L++P+ IA GT TA Y+ R+ L TF G S
Sbjct: 418 NDSWLYSPIFALIA-WGTVGLTAFYMFRIYLMTFEGHLS 455
>gb|AAA64199.1| (U21995) NADH dehydrogenase F [Molinia caerulea]
Length = 702
Score = 184 bits (462), Expect = 2e-45
Identities = 144/467 (30%), Positives = 231/467 (48%), Gaps = 47/467 (10%)
Query: 4 LPFIIIIPL-FGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVY 59
LP +I+ + FG F +P + + IWA ++ ++ + + + +G +I
Sbjct: 6 LPLPVIMSMGFGLFLIPTATK---NLRRIWAFPSVLLLSIAMVFSVHLSIQQINGSSIYQ 62
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 63 YLWSWTI--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYI 120
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 121 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 180
Query: 180 VLLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPV 231
+LLGI + G+L L K++ N + A LFLG + KS P+
Sbjct: 181 LLLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPL 238
Query: 232 HMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACIT 291
H+WL DA P+ ISA++ + GI+ +AR++ +F I+ + I + IT
Sbjct: 239 HVWLPDA-MEGPTPISALIHAATMVAAGIFLLARLL-PLF---ISLPLIMSFISLVGTIT 293
Query: 292 LIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHA 351
L +G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 294 LFLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHA 342
Query: 352 LMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPP 402
KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+PP
Sbjct: 343 YSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPP 402
Query: 403 LNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
L F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 403 LACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 448
>gb|AAA64841.1| (U21976) NADH dehydrogenase F [Setaria viridis]
Length = 701
Score = 183 bits (461), Expect = 3e-45
Identities = 145/468 (30%), Positives = 232/468 (48%), Gaps = 49/468 (10%)
Query: 4 LPFIIIIPL-FGAFSMPIVSLLKGKAKEIWA----TIISFATLIVGIEVFREVWSGGTIV 58
LP +I+ + FG F +P + + IWA ++S A L+ + + + +G +I
Sbjct: 6 LPLPVIMSMGFGLFLIPTATK---NLRRIWAFPSILLLSIA-LVFSVHLSIQQINGSSIY 61
Query: 59 YALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTL 118
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++
Sbjct: 62 QYLWSWTI--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVY 119
Query: 119 ILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASS 178
I MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 120 ISFFNTAMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDF 179
Query: 179 FVLLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAP 230
+LLGI + G+L L K++ N + A LFLG + KS P
Sbjct: 180 GLLLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFP 237
Query: 231 VHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACI 290
+H+WL DA P+ ISA++ + ++ +AR +F +F I+ + I + +
Sbjct: 238 LHVWLPDA-MEGPTPISALIHAATMVAAXVFLVAR-LFPLF---ISLPLIMNFISLVGTV 292
Query: 291 TLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNH 350
TL +G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + H
Sbjct: 293 TLFLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYEAALFHLITH 341
Query: 351 ALMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMP 401
A KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+P
Sbjct: 342 AYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIP 401
Query: 402 PLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
PL F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 402 PLACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 448
>pir||T12173 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Gleditsia
microphylla chloroplast (fragment)
>gi|2444418|gb|AAB71603.1| (AF020485) NADH
dehydrogenase-like protein [Gleditsia microphylla]
Length = 699
Score = 183 bits (461), Expect = 3e-45
Identities = 119/384 (30%), Positives = 197/384 (50%), Gaps = 32/384 (8%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
D + + +D +IM+++IT V L ++YS YM HD G +++ + MLG+
Sbjct: 68 DLSLEFGYLIDSLTSIMLILITTVGILVLIYSDNYMSHDEGYLRFFAYMSFFNTSMLGLV 127
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI LY
Sbjct: 128 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFCLLLGILGLYWI 187
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+L L + +E + + L GG + KS P+H+WL DA P+
Sbjct: 188 TGSLEFRNLFEIFNNLIYNNEVNLLFVTLCAFLLFGGSVAKSAQFPLHVWLPDA-MEGPT 246
Query: 245 SISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQED 304
ISA++ + GI+ +AR++ +F + P+ + I +I IT+++G +A+ Q+D
Sbjct: 247 PISALIHAATMVAAGIFLVARLL-PLF--IVIPSIMNGIALI-GIITVVLGATLALAQKD 302
Query: 305 MKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVV 364
+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +G +
Sbjct: 303 IKRSLAYSTMSQLGYMMLALGMG-----------SYRAALFHLITHAYSKALLFLGSGSI 351
Query: 365 LHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES 415
+H + T +N+ + GL K +P T AFL+G ++ G+PP F SK I
Sbjct: 352 IHSMETIVGYSPDKSQNMVLMGGLTKHVPITKTAFLVGTLSLCGIPPFACFWSKDEILND 411
Query: 416 SALFNPLLGAIAIIGTAFCTAAYV 439
S L++P+ IA TA TA Y+
Sbjct: 412 SWLYSPIFAIIA-CSTAGLTAFYM 434
>gb|AAD26217.1| (AF117400) NADH dehydrogenase [Cleistachne sorghoides]
Length = 699
Score = 183 bits (461), Expect = 3e-45
Identities = 146/468 (31%), Positives = 232/468 (49%), Gaps = 49/468 (10%)
Query: 4 LPFIIIIPL-FGAFSMPIVSLLKGKAKEIWA----TIISFATLIVGIEVFREVWSGGTIV 58
LP +I+ + FG F +P + + IWA ++S A ++ + + + +G +I
Sbjct: 2 LPLPVIMSMGFGLFLIPTATK---NLRRIWAFPSILLLSIA-MVFSLHLSIQQINGSSIY 57
Query: 59 YALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTL 118
L S T DF + + VD +IM+++IT V L ++YS +YM HD G +++
Sbjct: 58 QYLWSWTI--NNDFSLEFGYLVDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVY 115
Query: 119 ILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASS 178
I MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 116 ISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDX 175
Query: 179 FVLLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAP 230
+LLGI + G+L L K++ N + A LFLG + KS P
Sbjct: 176 GLLLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFP 233
Query: 231 VHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACI 290
+H+WL DA P+ ISA++ + GI+ +AR++ +F I+ + I + I
Sbjct: 234 LHVWLPDA-MEGPTPISALIHAATMVAAGIFLLARLL-PLF---ISLPLIMSFISLVGTI 288
Query: 291 TLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNH 350
TL +G +A+ Q D+KR L YS++ Q+GY++L LGIG + A++H + H
Sbjct: 289 TLFLGATLALAQRDIKRSLXYSTMSQLGYMMLALGIG-----------SYQAALFHLITH 337
Query: 351 ALMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMP 401
A KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+P
Sbjct: 338 AYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIP 397
Query: 402 PLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
PL F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 398 PLACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 444
>pir||T13773 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Veronica
catenata chloroplast (fragment)
Length = 678
Score = 183 bits (461), Expect = 3e-45
Identities = 138/437 (31%), Positives = 217/437 (49%), Gaps = 53/437 (12%)
Query: 31 IWATIISFATLIVGIEVFREVWSGGTIVYALGSETPFGKADFPIRIVWEVDKFGAIMVLI 90
I+AT +S I +++ VWS +AL + DF + + +D +IM ++
Sbjct: 45 IFATNLSIEQ-INSNSIYQYVWS-----WALNN-------DFSLEFGYLIDPLTSIMSML 91
Query: 91 ITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIAITGDIFNFYVFLEIMSIASY 150
IT V L ++YS YM HD G ++++ + MLG+ + ++ Y+F E++ + SY
Sbjct: 92 ITTVGILVLIYSDNYMAHDQGYLRFFSYMSFFSTSMLGLVTSSNLIQIYIFWELVGVCSY 151
Query: 151 ALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQYGTL-------TMGYLAVKM 203
L+ F A K + +LLGI Y G+ L
Sbjct: 152 LLIGFWFTRPLAANACQKAFVTNRVGDFGLLLGIIGFYWVTGSFEFRDLFEIFNNLVYNN 211
Query: 204 SENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPSSISAMLSGLVIKIGGIYAI 263
N V A LF G + KS P+H+WL DA P+ ISA++ + GI+ +
Sbjct: 212 QVNYPFVTLCAALLFAGAVA-KSAQFPLHIWLPDA-MEGPTPISALIXAATMVAXGIFLV 269
Query: 264 ARV--VFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQEDMKRLLAYSSVGQIGYIL 321
AR+ +F + +N II + ITL++G +A+ Q+D+KR LAYS++ Q+GY++
Sbjct: 270 ARLLPLFVVIPYIMN------IISLIGIITLLLGATLALAQKDIKRGLAYSTMSQLGYMM 323
Query: 322 LGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVVLHELGT---------RN 372
L LG+G + GA++H + HA KALLFL +G V+H + T +N
Sbjct: 324 LALGMG-----------SYRGALFHLITHAYSKALLFLGSGSVIHSMETVVGYSPDKSQN 372
Query: 373 LNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSALFNPLLGAIAIIGTA 432
+ + GL K +P T +FL+G ++ G+PPL F SK I S L++P+ IA TA
Sbjct: 373 MALMGGLTKYVPITKTSFLVGTLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIAWT-TA 431
Query: 433 FCTAAYV-RV-LFTFFG 447
TA Y+ R+ L TF G
Sbjct: 432 GLTAFYMFRIYLLTFEG 448
>gb|AAF08165.1| (AF130209) NADH dehydrogenase subunit F [Rhododendron mucronulatum]
Length = 702
Score = 183 bits (461), Expect = 3e-45
Identities = 126/397 (31%), Positives = 199/397 (49%), Gaps = 40/397 (10%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM+++IT V L ++YS Y+ HD G +++ + MLG+
Sbjct: 71 DFSLEFGYLIDPLTSIMLVLITSVGVLVLIYSDNYLSHDQGYLRFFAYMSFFSASMLGLV 130
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 131 TSSNLIEIYIFWELVGMCSYLLIGFWFTRPVAANACQKAFITNRIGDFGLLLGILGFYWT 190
Query: 191 YGTL-------TMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAP 243
G+ L N V A+ LF G KS P+H+WL DA P
Sbjct: 191 TGSFEFRDLFEIFNNLIYNNEINVLFVTLCAILLFTGATA-KSAQFPLHVWLPDA-MEGP 248
Query: 244 SSISAMLSGLVIKIGGIYAIARV--VFSIFWPAINPATVGWIIIIFACITLIVGNAMAVV 301
+ ISA++ + GI+ +AR+ +F + +N +I IT+ +G +A+
Sbjct: 249 TPISALIHAATMVAAGIFLVARLLPLFIVIPSVMN------LISFIGIITVFLGATLAIA 302
Query: 302 QEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVA 361
Q+D+KR LAYS++ Q+GYI+L LG+G + A++H + HA KALLFL +
Sbjct: 303 QKDIKRGLAYSTMSQLGYIILALGMG-----------SYRTALFHLITHAYSKALLFLAS 351
Query: 362 GVVLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLI 412
G V+H + T +NL + GL K +P T +FL+G ++ G+PPL F SK I
Sbjct: 352 GSVIHSMETVVGYSPEKSQNLVLMGGLTKHLPITKISFLLGTFSLCGIPPLACFWSKDEI 411
Query: 413 YESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
S L++P+ G IA + TA T+ Y+ R+ L TF G
Sbjct: 412 LNDSWLYSPIFGIIAWL-TAGLTSFYMFRIYLLTFEG 447
>gb|AAD52748.1|AF123690_1 (AF123690) NADH dehydrogenase [Proboscidea louisianica]
Length = 703
Score = 183 bits (461), Expect = 3e-45
Identities = 127/395 (32%), Positives = 204/395 (51%), Gaps = 36/395 (9%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM+++IT V + ++YS YM HD G +++ + MLG+
Sbjct: 72 DFSLEFGYLIDPLTSIMLMLITTVGIMVLIYSDNYMAHDQGYLRFFAYMSFFSTSMLGLV 131
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 132 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPPAANACQKAFVTNRVGDFGLLLGILGFYWI 191
Query: 191 YGTL-------TMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAP 243
G+ L N T V+ AL LF G + KS P+H+WL DA P
Sbjct: 192 TGSFEFRDLFEIFNNLIYNNEGNSTFVSLCALLLFAGAVA-KSAQFPLHVWLPDA-MEGP 249
Query: 244 SSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQE 303
+ ISA++ + GI+ +AR++ +F + P + +I +I IT+++G +A+ Q+
Sbjct: 250 TPISALIHAATMVAAGIFLVARLL-PLF--IVIPYIMNFISLI-GIITVLLGATLALAQK 305
Query: 304 DMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGV 363
D+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +G
Sbjct: 306 DIKRGLAYSTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSKALLFLGSGS 354
Query: 364 VLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYE 414
V+H + T +N+ + GL K +P T +FL+G ++ G+PPL F SK I
Sbjct: 355 VIHSMETIVGYSPDKSQNMALMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSKDEILN 414
Query: 415 SSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
S L++P+ IA TA TA Y+ R+ L TF G
Sbjct: 415 DSWLYSPIFAIIA-WATAGLTAFYMFRIYLLTFEG 448
>gb|AAF79011.1| (L75880) NADH dehydrogenase F [Tillandsia fraseri]
Length = 695
Score = 183 bits (461), Expect = 3e-45
Identities = 134/465 (28%), Positives = 233/465 (49%), Gaps = 40/465 (8%)
Query: 4 LPFIII-IPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVY 59
+PF+ + + + F + ++ + +WA ++ ++ + + + +G I
Sbjct: 2 IPFLPLPVTMSIGFGLLLIPTATKNIRRMWAFPSVLLLSIAMVFSVNLSIQQINGSFIYQ 61
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
L S T DF + + +D +IM ++IT V + ++YS +YM HD G +++ +
Sbjct: 62 YLWSWTI--NNDFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDKYMYHDQGYLRFFAYM 119
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
MLG+ + ++ Y+F E++ + SY L+ F A K +
Sbjct: 120 SFFNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 179
Query: 180 VLLGIALLYGQYGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHM 233
+LLGI Y G+L YL ++ + ++ A + +L G + KS P+H+
Sbjct: 180 LLLGILGFYWITGSLEFRYLLEITNNLIQNNGVNSLFATLCASLLFVGAVAKSAQFPLHV 239
Query: 234 WLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLI 293
WL DA P+ ISA++ + GI+ +AR++ +F + P + +I +I ITL+
Sbjct: 240 WLPDA-MEGPTPISALIHAATMVXXGIFLVARLL-PLF--IVIPYIMNFISLI-GVITLL 294
Query: 294 VGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALM 353
+G +A+ Q D+K+ LAYS++ Q+GYI+L LGIG + A++H + HA
Sbjct: 295 LGATLALAQRDIKKSLAYSTMSQLGYIMLALGIG-----------SYRAALFHLITHAYS 343
Query: 354 KALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLN 404
KALLFL +G ++H + ++N+ + GL + +P T FL+G ++ G+PPL
Sbjct: 344 KALLFLGSGSIIHSMEPIVGYSPDKSQNMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLA 403
Query: 405 GFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I S L++P+ IA TA TA Y+ RV L TF G
Sbjct: 404 CFWSKDDILNDSWLYSPIFAVIAYF-TAGLTAFYMFRVYLLTFDG 447
>gb|AAA84712.2| (L36419) NADH dehydrogenase subunit [Veronica persica]
Length = 679
Score = 183 bits (461), Expect = 3e-45
Identities = 138/437 (31%), Positives = 217/437 (49%), Gaps = 53/437 (12%)
Query: 31 IWATIISFATLIVGIEVFREVWSGGTIVYALGSETPFGKADFPIRIVWEVDKFGAIMVLI 90
I+AT +S I +++ VWS +AL + DF + + +D +IM ++
Sbjct: 45 IFATNLSIEQ-INSNSIYQYVWS-----WALNN-------DFSLEFGYLIDPLTSIMSML 91
Query: 91 ITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIAITGDIFNFYVFLEIMSIASY 150
IT V L ++YS YM HD G ++++ + MLG+ + ++ Y+F E++ + SY
Sbjct: 92 ITTVGILVLIYSDNYMAHDQGYLRFFSYMSFFSTSMLGLVTSSNLIQIYIFWELVGVCSY 151
Query: 151 ALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQYGTL-------TMGYLAVKM 203
L+ F A K + +LLGI Y G+ L
Sbjct: 152 LLIGFWFTRPLAANACQKAFVTNRVGDFGLLLGIIGFYWVTGSFEFRDLFEIFNNLVYNN 211
Query: 204 SENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPSSISAMLSGLVIKIGGIYAI 263
N V A LF G + KS P+H+WL DA P+ ISA++ + GI+ +
Sbjct: 212 QVNYPFVTLCAALLFAGAVA-KSAQFPLHIWLPDA-MEGPTPISALIXAATMVAXGIFLV 269
Query: 264 ARV--VFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQEDMKRLLAYSSVGQIGYIL 321
AR+ +F + +N II + ITL++G +A+ Q+D+KR LAYS++ Q+GY++
Sbjct: 270 ARLLPLFVVIPYIMN------IISLIGIITLLLGATLALAQKDIKRGLAYSTMSQLGYMM 323
Query: 322 LGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVVLHELGT---------RN 372
L LG+G + GA++H + HA KALLFL +G V+H + T +N
Sbjct: 324 LALGMG-----------SYRGALFHLITHAYSKALLFLGSGSVIHSMETVVGYSPDKSQN 372
Query: 373 LNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSALFNPLLGAIAIIGTA 432
+ + GL K +P T +FL+G ++ G+PPL F SK I S L++P+ IA TA
Sbjct: 373 MALMGGLTKYVPITKTSFLVGTLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIAWT-TA 431
Query: 433 FCTAAYV-RV-LFTFFG 447
TA Y+ R+ L TF G
Sbjct: 432 GLTAFYMFRIYLLTFEG 448
>gb|AAG12210.1| (AF163444) NADH dehydrogenase subunit F [Carex mertensii]
Length = 711
Score = 183 bits (461), Expect = 3e-45
Identities = 133/456 (29%), Positives = 213/456 (46%), Gaps = 40/456 (8%)
Query: 4 LPFIII-IPLFGAFSMPIVSLLKGKAKEIWATIISF---ATLIVGIEVFREVWSGGTIVY 59
+PF+ + +P+ + ++ + IWA F T+I + + +G I
Sbjct: 13 IPFLSLPVPISIGLGLLLIPTAIKNIRRIWAFPSIFFLIITMIFSLNFSIQQINGSLIYQ 72
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
L S T DF + + +D +IM+ +IT V ++YS YM HD +++ +
Sbjct: 73 YLWSWTI--NKDFSLEFGYLIDSLTSIMLTLITTVGITVLIYSDNYMSHDQAYLRFFAYL 130
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
+ MLG+ + ++ Y+F EI+ I SY L+ F A K +
Sbjct: 131 NLFNASMLGLVTSSNLIQIYIFWEIVGICSYLLIGFWFTRPLAANACQKAXVTNRVGDFG 190
Query: 180 VLLGIALLYGQYGTLTM-------GYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVH 232
+LLGI Y G+ L K N LF+G + KS P+H
Sbjct: 191 LLLGILAFYWIIGSFEFRDLFEITNNLIQKNGVNSLFTTLCTFLLFVGAIA-KSAQFPLH 249
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ + G++ +AR +F + + II + ITL
Sbjct: 250 IWLPDA-MEGPTPISALIHAATMVAAGVFLVAR----LFPLLLITPNIMHIISLIGLITL 304
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +A+ Q D+KR LAYS++ Q+GYI+L LGIG + A++H + HA
Sbjct: 305 FLGATLALAQLDIKRSLAYSTMSQLGYIILALGIG-----------SSRAALFHLITHAY 353
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G ++H + +N+ + GL K +P T AFL+G ++ G+PPL
Sbjct: 354 SKALLFLGSGSIIHSMEPVVGYSPYKNQNMVLMGGLTKYIPITRTAFLLGTLSLCGIPPL 413
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV 439
F SK I +S L++P+ G I T TA Y+
Sbjct: 414 ACFWSKDXILSNSWLYSPIFGIITYFTTGL-TAFYM 448
>pir||T13056 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - weeping love
grass chloroplast (fragment) >gi|726142|gb|AAA64193.1|
(U21989) NADH dehydrogenase F [Eragrostis curvula]
Length = 701
Score = 183 bits (460), Expect = 4e-45
Identities = 147/468 (31%), Positives = 231/468 (48%), Gaps = 49/468 (10%)
Query: 4 LPFIIIIPL-FGAFSMPIVSLLKGKAKEIWA----TIISFATLIVGIEVFREVWSGGTIV 58
LP +I+ + G F +P + + IWA ++S A L+ I + + G +I
Sbjct: 6 LPLPVIMSMGLGLFLIPTATK---NLRRIWAFPSILLLSIA-LVFSIHLSIQQIKGSSIY 61
Query: 59 YALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTL 118
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++
Sbjct: 62 QYLWSWTI--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVY 119
Query: 119 ILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASS 178
I MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 120 ISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDF 179
Query: 179 FVLLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAP 230
+LLGI + G+L L K++ N + A LFLG + KS P
Sbjct: 180 GLLLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFP 237
Query: 231 VHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACI 290
+H+WL DA P+ ISA++ + GI+ +AR++ +F I+ + I + I
Sbjct: 238 LHVWLPDA-MEGPTPISALIHAATMVAAGIFLLARLL-PLF---ISLPLIMSFISLIGTI 292
Query: 291 TLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNH 350
TL +G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + H
Sbjct: 293 TLFLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITH 341
Query: 351 ALMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMP 401
A KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+P
Sbjct: 342 AYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLKKYVPITRTTFLCGTLSLCGIP 401
Query: 402 PLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
PL F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 402 PLACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 448
>gb|AAB37132.1| (U78680) NADH dehydrogenase [Caryopteris bicolor]
Length = 696
Score = 183 bits (460), Expect = 4e-45
Identities = 127/395 (32%), Positives = 203/395 (51%), Gaps = 36/395 (9%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM+++IT V + ++YS YM HD G +++ + MLG+
Sbjct: 70 DFSLEFGYLIDPLTSIMLMLITTVGIMVLIYSDNYMAHDQGYLRFFAYMSFFSTSMLGLV 129
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 130 TSSNLIQIYIFWELVGVCSYLLIGFWFTRPPAANACQKAFVTNRVGDFGLLLGILGFYWI 189
Query: 191 YGTL-------TMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAP 243
G+ + L N T V A LF G + KS P+H+WL DA P
Sbjct: 190 TGSFEFRDLFQILNNLIYNNEVNSTFVTLCAALLFAGAVA-KSAQFPLHVWLPDA-MEGP 247
Query: 244 SSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQE 303
+ ISA++ + GI+ +AR++ +F + P + +I +I ITL++G +A+ Q+
Sbjct: 248 TPISALIHXATMVAXGIFLVARLL-PLF--IVIPYIMNFISLI-GVITLLLGATLALAQK 303
Query: 304 DMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGV 363
D+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +G
Sbjct: 304 DIKRGLAYSTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSKALLFLGSGS 352
Query: 364 VLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYE 414
V+H + T +N+ + GL K +P T +FL+G ++ G+PPL F SK I
Sbjct: 353 VIHSMETIVGYSPDKSQNMVLMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSKDEILN 412
Query: 415 SSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
S L++P+ IA TA TA Y+ R+ L TF G
Sbjct: 413 DSWLYSPIFAIIA-WATAGLTAFYMFRIYLLTFCG 446
>pir||T13764 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - salsify
chloroplast >gi|847676|gb|AAC09384.1| (L39391) NADH
dehydrogenase [Tragopogon porrifolius]
Length = 741
Score = 183 bits (460), Expect = 4e-45
Identities = 125/394 (31%), Positives = 203/394 (50%), Gaps = 34/394 (8%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V + ++YS YM HD G +++ + MLG+
Sbjct: 80 DFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMSHDHGYLRFFAYMSFFSTSMLGLV 139
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ I SY L+ F +A K + +LLGI Y
Sbjct: 140 TSSNLIQIYIFWELVGICSYLLIGFWFTRPVAAKACQKAFVTNRVGDFGLLLGILGFYWI 199
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ L + +E + + L GG + KS P+H+WL DA P+
Sbjct: 200 TGSFEFRDLFQIFNNLISNNEVNFLFVTLCAVLLFGGAIAKSAQFPLHVWLPDA-MEGPT 258
Query: 245 SISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQED 304
ISA++ + GI+ +AR++ +F + P + +I +I IT+ +G +A+ Q+D
Sbjct: 259 PISALIHAATMVAAGIFLVARLM-PLF--IVIPYIMNFISLI-GIITVFLGATLALAQKD 314
Query: 305 MKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVV 364
+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +G V
Sbjct: 315 IKRGLAYSTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSKALLFLGSGSV 363
Query: 365 LHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES 415
+H + T +N+ + GL K +P T +FL+G ++ G+PPL F SK I
Sbjct: 364 IHSMETLVGYCPKKSQNMVLMGGLTKHVPITKNSFLLGTLSLCGIPPLACFWSKDEILND 423
Query: 416 SALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
S L++P+ G IA TA TA Y+ R+ L TF G
Sbjct: 424 SWLYSPIFGIIA-WSTAGLTAFYMCRIYLLTFEG 456
>emb|CAB65355.1| (AJ236267) NADH dehydrogenase subunit F [Proboscidea louisianica]
Length = 705
Score = 183 bits (460), Expect = 4e-45
Identities = 127/395 (32%), Positives = 204/395 (51%), Gaps = 36/395 (9%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM+++IT V + ++YS YM HD G +++ + MLG+
Sbjct: 77 DFSLEFGYLIDPLTSIMLMLITTVGIMVLIYSDNYMAHDQGYLRFFAYMSFFSTSMLGLV 136
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 137 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPPAANACQKAFVTNRVGDFGLLLGILGFYWI 196
Query: 191 YGTL-------TMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAP 243
G+ L N T V+ AL LF G + KS P+H+WL DA P
Sbjct: 197 TGSFEFRDLFEIFNNLIYNNEGNSTFVSLCALLLFAGAVA-KSAQFPLHVWLPDA-MEGP 254
Query: 244 SSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQE 303
+ ISA++ + GI+ +AR++ +F + P + +I +I IT+++G +A+ Q+
Sbjct: 255 TPISALIHAATMVAAGIFLVARLL-PLF--IVIPYIMNFISLI-GIITVLLGATLALAQK 310
Query: 304 DMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGV 363
D+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +G
Sbjct: 311 DIKRGLAYSTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSKALLFLGSGS 359
Query: 364 VLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYE 414
V+H + T +N+ + GL K +P T +FL+G ++ G+PPL F SK I
Sbjct: 360 VIHSMETVVGYSPDKSQNMVLMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSKDEILN 419
Query: 415 SSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
S L++P+ IA TA TA Y+ R+ L TF G
Sbjct: 420 DSWLYSPIFAIIA-WATAGLTAFYMFRIYLLTFEG 453
>gb|AAF08891.1|AF194860_1 (AF194860) NADH dehydrogenase [Cistanthe guadalupensis]
Length = 692
Score = 183 bits (460), Expect = 4e-45
Identities = 126/394 (31%), Positives = 204/394 (50%), Gaps = 34/394 (8%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V+ L ++YS YM HD G +++ + MLG+
Sbjct: 59 DFSLEFGYLIDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSFFNTSMLGLV 118
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI +Y
Sbjct: 119 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGIYWI 178
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ L + +E + + L G + KS P+H+WL DA P+
Sbjct: 179 TGSFEFQDLFEIFNNLINNNEIHFLFCILCTFLLFAGAVAKSAQFPLHVWLPDA-MEGPT 237
Query: 245 SISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQED 304
ISA++ + GI+ +AR++ +F + P+ + I I IT+++G +A+ Q+D
Sbjct: 238 PISALIHAATMVAAGIFLVARLL-PLF--VVIPSIMNGISFI-GIITVLLGATLALAQKD 293
Query: 305 MKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVV 364
+KR LAYS++ Q+GY++L LGIG + A++H + HA KALLFL +G V
Sbjct: 294 IKRSLAYSTMSQLGYMMLALGIG-----------SYRAALFHLITHAYSKALLFLGSGSV 342
Query: 365 LHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES 415
+H + ++N+ + GLAK +P T AFLIG ++ G+PPL F SK I
Sbjct: 343 IHSMEAIVGYSPYKSQNMVLMGGLAKHVPFTKTAFLIGTLSLCGIPPLACFWSKDEILND 402
Query: 416 SALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
S L++P+ IA + TA TA Y+ R+ L TF G
Sbjct: 403 SWLYSPIFAIIAYL-TAGLTAFYMFRIYLLTFEG 435
>gb|AAF25171.1|AF182343_1 (AF182343) NADH dehydrogenase [Sucrea maculata]
Length = 704
Score = 183 bits (460), Expect = 4e-45
Identities = 142/466 (30%), Positives = 230/466 (48%), Gaps = 45/466 (9%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWA-TIISFATLIVGIEVFREVW--SGGTIVYA 60
LP +I+ + F + ++ + IWA + F ++ + V+ + +G +I
Sbjct: 6 LPLPVIMSM--GFGLILIPTATKNLRRIWAFPCVLFLSIAMVFSVYLSIQQINGSSIYQY 63
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 64 LWSWTV--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYIS 121
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
MLG+ + ++ Y F E++ + SY L+ F A K + +
Sbjct: 122 FFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGL 181
Query: 181 LLGIALLYGQYGTLTMGYLAVKMSEN--------PTIVAKIALALFLGGLLFKSGAAPVH 232
LLGI + G+L L K++ N + A LFLG + KS P+H
Sbjct: 182 LLGILGFFWITGSLEFRDL-FKIANNWIPNNGISSLLTTLCAFLLFLGAVA-KSAQFPLH 239
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ + GI+ +AR +F +F I+ + + + ITL
Sbjct: 240 VWLPDA-MEGPTPISALIHAATMVAAGIFLLAR-LFPLF---ISLPLIMSFVSLVGTITL 294
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 295 FLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAY 343
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G ++H + ++N+ + GL K +P T FL G ++ G+PPL
Sbjct: 344 SKALLFLGSGSLIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPPL 403
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 404 ACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 448
>gi|11466446 subunit 5 of NADH-plastoquinoneoxidoreductase [Mesostigma viride]
>gi|7259589|gb|AAF43890.1|AF166114_102 (AF166114)
subunit 5 of NADH-plastoquinoneoxidoreductase
[Mesostigma viride]
Length = 652
Score = 183 bits (460), Expect = 4e-45
Identities = 133/447 (29%), Positives = 225/447 (49%), Gaps = 47/447 (10%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
+F + I + VD A+M++I+T V+ L ++Y+ YM +D G +++ + + MLG+
Sbjct: 80 NFLLEIGYFVDPLTAVMLVIVTTVAILVLIYTDGYMSYDEGYVRFFAYLSLFTTSMLGLV 139
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
++ ++ YVF E++ + SY L+ F +A K + +LLGI Y
Sbjct: 140 LSPNLLQIYVFWELVGMCSYLLIGFWFTRPAAADACQKAFVTNRVGDFGLLLGILGFYWM 199
Query: 191 YGTLTMGYLAVKMSENPTI-VAKIALALFLGGLLF-----KSGAAPVHMWLADAHPAAPS 244
G+ +++K+ + LA+F G L+F KS P+H+WL DA P+
Sbjct: 200 TGSFEFDVISMKLLQLAEYDNFNTQLAIFFGFLIFLGPVAKSAQFPLHVWLPDA-MEGPT 258
Query: 245 SISAMLSGLVIKIGGIYAIARV--VFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQ 302
ISA++ + G++ +AR+ +FS F ++ + W IT I+G +AV Q
Sbjct: 259 PISALIHAATMVAAGVFLVARMFPIFSQFPFLMD--LIAWT----GAITAIIGATIAVTQ 312
Query: 303 EDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAG 362
D+K+ LAYS++ Q+GY+++ +G+G + +++H + HA KALLFL AG
Sbjct: 313 VDLKKGLAYSTMSQLGYMIMAMGMG-----------SYTASLFHLMTHAYSKALLFLSAG 361
Query: 363 VVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIY 413
+H + +N++ + G+ K MP T AFLIG ++ G+PPL F SK I
Sbjct: 362 STIHGMEPIVGFNPAKNQNMSLMGGIRKYMPITGNAFLIGTLSLCGIPPLACFWSKDAIL 421
Query: 414 ESSALFNPLLGAIAIIGTAFCTAAYV-RVLFTFF-------GRPSEKVMKAKDP---GAT 462
++ + +PLL I TA T+ Y+ R+ F F EK+ K P
Sbjct: 422 SNAFVHSPLLWFIG-WSTAGLTSFYMFRMYFLVFEGEFRGNSVNQEKIRSNKLPKESNTK 480
Query: 463 MLLPIFILVIAIIGMGLFPWQISDKFM 489
M LP+ IL + I +G +++FM
Sbjct: 481 MTLPLIILTLFSITIGWIGTPFNNQFM 507
>pir||T12659 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Caryopteris
bicolor chloroplast (fragment)
Length = 696
Score = 183 bits (460), Expect = 4e-45
Identities = 127/395 (32%), Positives = 203/395 (51%), Gaps = 36/395 (9%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM+++IT V + ++YS YM HD G +++ + MLG+
Sbjct: 70 DFSLEFGYLIDPLTSIMLMLITTVGIMVLIYSDNYMAHDQGYLRFFAYMSFFSTSMLGLV 129
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 130 TSSNLIQIYIFWELVGVCSYLLIGFWFTRPPAANACQKAFVTNRVGDFGLLLGILGFYWI 189
Query: 191 YGTL-------TMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAP 243
G+ + L N T V A LF G + KS P+H+WL DA P
Sbjct: 190 TGSFEFRDLFQILNNLIYNNEVNSTFVTLCAALLFAGAVA-KSAQFPLHVWLPDA-MEGP 247
Query: 244 SSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQE 303
+ ISA++ + GI+ +AR++ +F + P + +I +I ITL++G +A+ Q+
Sbjct: 248 TPISALIHXATMVAXGIFLVARLL-PLF--IVIPYIMNFISLI-GVITLLLGATLALAQK 303
Query: 304 DMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGV 363
D+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +G
Sbjct: 304 DIKRGLAYSTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSKALLFLGSGS 352
Query: 364 VLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYE 414
V+H + T +N+ + GL K +P T +FL+G ++ G+PPL F SK I
Sbjct: 353 VIHSMETIVGYSPDKSQNMVLMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSKDEILN 412
Query: 415 SSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
S L++P+ IA TA TA Y+ R+ L TF G
Sbjct: 413 DSWLYSPIFAIIA-WATAGLTAFYMFRIYLLTFCG 446
>gb|AAF25173.1|AF182345_1 (AF182345) NADH dehydrogenase [Puelia olyriformis]
Length = 705
Score = 183 bits (460), Expect = 4e-45
Identities = 144/467 (30%), Positives = 230/467 (48%), Gaps = 47/467 (10%)
Query: 4 LPFIIIIPL-FGAFSMPIVSLLKGKAKEIW---ATIISFATLIVGIEVFREVWSGGTIVY 59
LP +I+ + FG F +P + + IW + + ++ + + + +G +I
Sbjct: 6 LPLPVIMSMGFGLFLIPTATK---NLRRIWVFPSVLFLSIAMVFSVHLSIQQINGSSIYQ 62
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 63 YLWSWTI--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYI 120
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
+ MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 121 SFFNISMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 180
Query: 180 VLLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPV 231
+LLGI + G+L L K++ N A LFLG + KS P+
Sbjct: 181 LLLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLFTTLCAFLLFLGAVA-KSAQFPL 238
Query: 232 HMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACIT 291
H+WL DA P+ ISA++ + GI+ +AR++ +F I+ + I + IT
Sbjct: 239 HVWLPDA-MEGPTPISALIHAATMVAAGIFLLARLL-PLF---ISLPFIMSFISLVGTIT 293
Query: 292 LIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHA 351
L +G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 294 LFLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHA 342
Query: 352 LMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPP 402
KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+PP
Sbjct: 343 YSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVFMGGLRKYVPITRTTFLWGTLSLCGIPP 402
Query: 403 LNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
L F SK I +S L++P G IA TA TA Y+ RV L TF G
Sbjct: 403 LACFWSKDEILSNSRLYSPFFGIIASF-TAGLTAFYMFRVYLLTFDG 448
>pir||T13503 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Olyra
latifolia chloroplast (fragment)
>gi|755835|gb|AAA64776.1| (U21971) NADH dehydrogenase F
[Olyra latifolia]
Length = 704
Score = 183 bits (459), Expect = 5e-45
Identities = 144/466 (30%), Positives = 232/466 (48%), Gaps = 46/466 (9%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWA-TIISFATLIVGIEVFREVW--SGGTIVYA 60
LP +I+ + F + ++ + IWA + F ++ + V+ + +G +I
Sbjct: 7 LPLPVIMSM--GFGLILIPTATKNLRRIWAFPSVLFLSIAMVFSVYLSIQQINGSSIYQY 64
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 65 LWSWTV--NNDFSLEFGYLIDPLTSIMLILITTVGVLVLIYSDDYMSHDEGYLRFFVYIS 122
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
MLG+ I+ ++ Y F E++ + SY L+ F A K + +
Sbjct: 123 FFNTSMLGLVISSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGL 182
Query: 181 LLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPVH 232
LLGI + G+L L K++ N + A LFLG + KS P+H
Sbjct: 183 LLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPLH 240
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ ++ GI+ +AR +F +F I+ + + + ITL
Sbjct: 241 VWLPDA-MEGPTPISALIHATMV-AAGIFLLAR-LFPLF---ISLPLIMSFVSLVGTITL 294
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 295 FLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAY 343
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+PPL
Sbjct: 344 SKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPPL 403
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 404 ACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 448
>pir||T12696 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 -
Brachyelytrum erectum chloroplast (fragment)
>gi|726174|gb|AAA64209.1| (U22005) NADH dehydrogenase F
[Brachyelytrum erectum]
Length = 703
Score = 183 bits (459), Expect = 5e-45
Identities = 142/466 (30%), Positives = 228/466 (48%), Gaps = 45/466 (9%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVYA 60
LP +I+ + F + ++ + IWA + ++ +++ + +G +I
Sbjct: 6 LPLPVIMSM--GFGLILIPTATKNLRRIWAFPSVLFLSVAMVFSVQLSIQQINGSSIYQY 63
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
L S T DF + + +D +IM+++IT V L ++YS YM HD G +++ I
Sbjct: 64 LWSWTV--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDGYMSHDEGYFRFFVYIS 121
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
MLG+ + ++ Y F E++ + SY L+ F A K + +
Sbjct: 122 FFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGL 181
Query: 181 LLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPVH 232
LLGI + G+L L K++ N + A LFLG + KS P+H
Sbjct: 182 LLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPLH 239
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ + GI+ +AR++ +F I+ + I + ITL
Sbjct: 240 IWLPDA-MEGPTPISALIHAATMVAAGIFLLARLL-PLF---ISLPLIMSFISLVGTITL 294
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +AV Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 295 FLGATLAVAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAY 343
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+PPL
Sbjct: 344 SKALLFLGSGSVIHSMEPLLGYSPDRSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPPL 403
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 404 ACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 448
>gb|AAB37165.1| (U78684) NADH dehydrogenase [Teucridium parvifolium]
Length = 696
Score = 183 bits (459), Expect = 5e-45
Identities = 121/387 (31%), Positives = 195/387 (50%), Gaps = 38/387 (9%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM+++IT V + ++YS YM HD G +++ + MLG+
Sbjct: 70 DFSLEFGYLIDPLTSIMLMLITTVGIMVLIYSDNYMSHDQGYLRFFAYMSFFSTSMLGLV 129
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 130 TSSNLIQIYIFWELVGVCSYLLIGFWFTRPPAANACQKAFVTNRVGDFGLLLGILGFYWI 189
Query: 191 YGTL-------TMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAP 243
G+ + L N T V A LF G + KS P+H+WL DA P
Sbjct: 190 TGSFEFRDLFEILNNLIYNNEVNFTFVTLCAALLFAGAVA-KSAQFPLHVWLPDA-MEGP 247
Query: 244 SSISAMLSGLVIKIGGIYAIARV--VFSIFWPAINPATVGWIIIIFACITLIVGNAMAVV 301
+ ISA++ + GI+ +AR+ +F + +N +I + ITL++G +A+
Sbjct: 248 TPISALIHAATMAAAGIFLVARLLPLFIVIPYIMN------LISVIGAITLLLGATLALA 301
Query: 302 QEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVA 361
Q+D+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +
Sbjct: 302 QKDIKRGLAYSTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSKALLFLGS 350
Query: 362 GVVLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLI 412
G V+H + T +N+ + GL K +P T +FL+G ++ G+PPL F SK I
Sbjct: 351 GSVIHSMETIVGYSPDKSQNMVLMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSKDEI 410
Query: 413 YESSALFNPLLGAIAIIGTAFCTAAYV 439
S L++P+ IA TA TA Y+
Sbjct: 411 LNDSWLYSPIFAIIA-WATAGLTAFYM 436
>gb|AAB48066.1| (L36393) NADH dehydrogenase subunit [Borago officinalis]
Length = 693
Score = 183 bits (459), Expect = 5e-45
Identities = 127/394 (32%), Positives = 201/394 (50%), Gaps = 34/394 (8%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + +D +IM ++IT V L ++YS YM HD G +++ + MLG+
Sbjct: 72 DFSLEFXXLIDPLTSIMSILITTVGILVLIYSDNYMSHDQGYLRFFAYMSFFSTSMLGLV 131
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K L +LLGI Y
Sbjct: 132 TSSNLIQIYIFWELVGMCSYLLIGFWFARPAAANACQKAFVTNRLGDFGLLLGILGFYWI 191
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ L + +E I A + L G + KS P+H+WL DA P+
Sbjct: 192 TGSFEFLDLFEIFKNLISNNEVNLIFATLCAVLLFTGAIAKSAQFPLHVWLPDA-MEGPT 250
Query: 245 SISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQED 304
ISA++ + GI+ +AR++ +F + P + +I +I IT+++G +A+ Q+D
Sbjct: 251 PISALIHXATMVXAGIFLVARLL-PLF--IVIPYIMNFIALI-GIITVLLGATLAIAQKD 306
Query: 305 MKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVV 364
+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +G V
Sbjct: 307 IKRGLAYSTMSQLGYMMLALGMG-----------SYQNALFHLITHAYSKALLFLGSGSV 355
Query: 365 LHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES 415
+H + T +N+ + GL K +P T +FL+G ++ G+PPL F SK I
Sbjct: 356 IHSMETIVGYSPDKSQNMVLMGGLTKHVPITKTSFLLGTLSLSGIPPLACFWSKDAILND 415
Query: 416 SALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
S L++PL IA TA TA Y+ R+ L TF G
Sbjct: 416 SWLYSPLFAIIA-WSTAGLTAFYMFRIYLLTFEG 448
>pir||G75113 NADH dehydrogenase I chain M PAB0490 - Pyrococcus abyssi (strain
Orsay) >gi|5458135|emb|CAB49624.1| (AJ248285) NADH
DEHYDROGENASE I SUBUNIT M [Pyrococcus abyssi]
Length = 618
Score = 183 bits (459), Expect = 5e-45
Identities = 121/401 (30%), Positives = 197/401 (48%), Gaps = 50/401 (12%)
Query: 110 TGLEKYYTLILILEL-GMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIK 168
T + Y L ++ L G LGI D+ F++F EIM+ AS+ +V + A +K
Sbjct: 94 TAKDGYEWLFALMSLTGALGIFTAQDLVVFFIFWEIMTFASFMMVLKFNRA-----ASLK 148
Query: 169 YMFVGSLASSFVLLGIALLYGQYGTLTMGYLAVKMSENPTIVAKIALALFLGG------- 221
Y + + + +L+ I L+Y + G+ + S+ K A++ LGG
Sbjct: 149 YFLLSIMGAYAMLVAIGLIYAKTGSFSF-------SDISAFFGKEAVSTMLGGTPAFSKL 201
Query: 222 ------LLF------KSGAAPVHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFS 269
LLF K+G P+H+W DA+ S +A+ SG++ K G+Y +
Sbjct: 202 DVALIYLLFLLAFGVKAGMFPLHVWAPDAYSETDQSYTAIFSGVLSK-AGVYGFILLYIL 260
Query: 270 IFWPAI-------NPATVGWIIIIFACITLIVGNAMAVVQEDMKRLLAYSSVGQIGYILL 322
++ + + G++I +T+IVG +A +QED++RL AYSS+ Q+GYIL+
Sbjct: 261 MYGKLLIDLGQVRSAPAFGYVIAFLGGLTIIVGGILAALQEDIRRLFAYSSISQVGYILV 320
Query: 323 GLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVVLHELGTRNLNELSGLAKT 382
GLGIG + + AIYH ++HAL K L FL+ +++ G + GLA+
Sbjct: 321 GLGIGT--------SLGIEAAIYHAISHALFKGLFFLIVATLIYRTGKTEFKDFGGLAEK 372
Query: 383 MPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSALFN-PLLGAIAIIGTAFCTAAYVRV 441
MP T I ++ G+PPL GFASKWLI+E+ N P+LG + G+A +R
Sbjct: 373 MPFTFTMAFIAILSLAGIPPLVGFASKWLIFEAVISQNLPILGGMVFFGSAIGFVYLIRF 432
Query: 442 LF-TFFGRPSEKVMKAKDPGATMLLPIFILVIAIIGMGLFP 481
+ +FG+ + KD + + + IL + G+ P
Sbjct: 433 TYAVWFGQRPSDIEDTKDAPLPLAIGMAILGTLNVVFGVAP 473
>gb|AAD52743.1|AF123685_1 (AF123685) NADH dehydrogenase [Leucophyllum frutescens]
Length = 692
Score = 183 bits (459), Expect = 5e-45
Identities = 122/396 (30%), Positives = 203/396 (50%), Gaps = 38/396 (9%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM+++IT V + ++YS YM +D G +++ + MLG+
Sbjct: 72 DFSLEFGYLIDPLTSIMLMLITTVGIMVLIYSDNYMAYDQGYLRFFAYMSFFSTSMLGLV 131
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 132 TSSNLIQIYIFWELVGMCSYLLIGFWFTRTPAANACQKAFVTNRVGDFGLLLGILGFYWI 191
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ G L + +E ++ AL G + KS P+H+WL DA P+
Sbjct: 192 TGSFEFGDLFEIFNNLIYNNEVNSLFVTFCAALLFAGAVAKSAQFPLHVWLPDA-MEGPT 250
Query: 245 SISAMLSGLVIKIGGIYAIARV--VFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQ 302
ISA++ + GI+ +AR+ +F + +N +I + IT+++G +A+ Q
Sbjct: 251 PISALIHAATMVAAGIFLVARLLPLFIVIPYIMN------LISLIGIITVLLGATLALAQ 304
Query: 303 EDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAG 362
+D+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +G
Sbjct: 305 KDIKRGLAYSTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSKALLFLGSG 353
Query: 363 VVLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIY 413
V+H + T +N+ + GL K +P T +FL+G ++ G+PPL F SK I
Sbjct: 354 SVIHSMETIVGYSPDKSQNMVLMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSKDEIL 413
Query: 414 ESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
S L++P+ IA + TA TA Y+ R+ L TF G
Sbjct: 414 NDSWLYSPIFAIIAWV-TAGLTAFYMFRIYLLTFEG 448
>pir||F71019 hypothetical protein PH1451 - Pyrococcus horikoshii
>gi|3257875|dbj|BAA30558.1| (AP000006) 617aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 617
Score = 183 bits (459), Expect = 5e-45
Identities = 125/437 (28%), Positives = 212/437 (47%), Gaps = 40/437 (9%)
Query: 71 DFPIRIVWEVDKF--GAIMVLIITFVSFLAILYSLE--YMKHDTGLEKYYTLILILEL-G 125
D PIR + F G M + S +A + L + T + Y L ++ L G
Sbjct: 50 DHPIRATISLGGFELGFSMSHLNWVFSMIAAVVGLSAVFGMASTAKDSYEWLFSLMSLTG 109
Query: 126 MLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIA 185
LGI + D+ F++F E+M+ +S+ +V + A +KY+ + + + +L+ I
Sbjct: 110 ALGIFMAQDLVTFFIFWEVMTFSSFMMVLKFNRA-----ASLKYLILSIIGAYSMLVAIG 164
Query: 186 LLYGQYGTLTMGYLA--------VKMSENPTIVAKIALAL----FLGGLLFKSGAAPVHM 233
++Y + GT T ++ + M + ++ +AL FL K+G P+H+
Sbjct: 165 IIYAKTGTFTFADISAFFRKEAMLAMLGGKSTFSRFDMALIYLLFLMAFGVKAGMFPLHV 224
Query: 234 WLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAI-------NPATVGWIIII 286
W DA+ S +A+ SG++ K G +Y + ++ + G+II
Sbjct: 225 WAPDAYSETDQSYTAIFSGVLSKTG-VYGFILLYVLMYGKLLIDLGQFKGTPLFGYIIAF 283
Query: 287 FACITLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYH 346
+T+I+G +A +QED+++L AYSS+ Q+GYIL+GLGIG + + AIYH
Sbjct: 284 LGGLTIIIGGVLAALQEDIRKLFAYSSISQVGYILVGLGIGT--------SLGIEAAIYH 335
Query: 347 TVNHALMKALLFLVAGVVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGF 406
++HAL K L FLV +++ G + GLA+ MP T I ++ G+PPL GF
Sbjct: 336 AISHALFKGLFFLVVATIIYRTGKTEFKDFGGLAEKMPFTFAMAFIAILSLAGIPPLVGF 395
Query: 407 ASKWLIYESSALFN-PLLGAIAIIGTAFCTAAYVRVLF-TFFGRPSEKVMKAKDPGATML 464
ASKWLI+E+ P+LG + G+A +R + +FG+ + KD +
Sbjct: 396 ASKWLIFEAVISQKLPILGGMLFFGSAIGFVYLIRFTYAVWFGQRPSDIEDTKDAPLPLA 455
Query: 465 LPIFILVIAIIGMGLFP 481
+ + IL + G+ P
Sbjct: 456 IGMGILGTLNVVFGVAP 472
>gb|AAF08857.1|AF194825_1 (AF194825) NADH dehydrogenase [Bougainvillea alba]
Length = 689
Score = 183 bits (459), Expect = 5e-45
Identities = 123/394 (31%), Positives = 204/394 (51%), Gaps = 34/394 (8%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V+ L ++YS YM HD G +++ + MLG+
Sbjct: 60 DFSLEFGYLIDPLTSIMSMLITTVAILVLIYSDNYMSHDRGYLRFFAYMSFFNTSMLGLV 119
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
I+ ++ Y+F E++ + SY L+ F A K + +LLGI LY
Sbjct: 120 ISSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRIGDFGLLLGILGLYWI 179
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ G L + +E + + G + KS P+H+WL DA P+
Sbjct: 180 TGSFEFGDLFEIFNNLINKNEINFLFCILCTLFLFAGPVAKSAQFPLHVWLPDA-MEGPT 238
Query: 245 SISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQED 304
ISA++ + GI+ +AR++ +F + P T+ +I IT+++G +A+ Q+D
Sbjct: 239 PISALIHAATMVAAGIFLVARLL-PLF--IVIPYTMN-VISFIGIITVLLGATLALAQKD 294
Query: 305 MKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVV 364
+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +G +
Sbjct: 295 IKRSLAYSTMSQLGYMMLALGMG-----------SYRTALFHLITHAYSKALLFLGSGSI 343
Query: 365 LHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES 415
+H + ++N+ + GLA+ +P T +FLIG ++ G+PPL F SK I
Sbjct: 344 IHSMEAIVGYSPDKSQNMVLMGGLARHVPITKASFLIGTLSLCGIPPLACFWSKDEILND 403
Query: 416 SALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
S L++P+ +A TA TA Y+ R+ L TF G
Sbjct: 404 SWLYSPIFAILAYF-TAGLTAFYMFRIYLLTFEG 436
>gb|AAF08893.1|AF194862_1 (AF194862) NADH dehydrogenase [Talinella cf. pachypoda]
Length = 693
Score = 183 bits (459), Expect = 5e-45
Identities = 126/394 (31%), Positives = 203/394 (50%), Gaps = 34/394 (8%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V+ L ++YS +YM HD G +++ + MLG+
Sbjct: 60 DFSLEFGYLIDPLTSIMSMLITTVAILVLIYSDKYMSHDQGYLRFFAYMSFFNTSMLGLV 119
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI +Y
Sbjct: 120 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGIYWI 179
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ L + +E + + L G + KS P+H+WL DA P+
Sbjct: 180 TGSFEFRDLFEIFNNLINQNEIHFLFCILCTFLLFAGAVAKSAQFPLHVWLPDA-MEGPT 238
Query: 245 SISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQED 304
ISA++ + GI+ +AR++ +F + P + I I IT+++G +A+ Q+D
Sbjct: 239 PISALIHAATMVAAGIFLVARLL-PLF--LVIPYIMNGISFI-GIITVLLGATLALAQKD 294
Query: 305 MKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVV 364
+KR LAYS++ Q+GY++LGLGIG + A++H + HA KALLFL +G V
Sbjct: 295 IKRSLAYSTMSQLGYMMLGLGIG-----------SYRAALFHLITHAYSKALLFLGSGSV 343
Query: 365 LHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES 415
+H + ++N+ + GL K +P T AFLIG ++ G+PPL F SK I
Sbjct: 344 IHSMEAIVGYSPDKSQNMVLMGGLTKHVPITKTAFLIGTLSLCGIPPLACFWSKDEILND 403
Query: 416 SALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
S L++P+ IA TA TA Y+ R+ L TF G
Sbjct: 404 SWLYSPIFAIIAYF-TAGLTAFYMFRIYLLTFEG 436
>gb|AAF22404.1|AF047797_1 (AF047797) NADH dehydrogenase [Bourreria costaricensis]
Length = 696
Score = 183 bits (459), Expect = 5e-45
Identities = 125/395 (31%), Positives = 199/395 (49%), Gaps = 36/395 (9%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V + ++YS YM HD G +++ + MLG+
Sbjct: 72 DFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMSHDQGYLRFFAYMSFFSTSMLGLV 131
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 132 TSSNLIQIYIFWELVGMCSYLLIGFWFARPLAANACQKAFVTNRVGDFGLLLGILGFYWI 191
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ L + +E A + L G + KS P+H+WL DA P+
Sbjct: 192 TGSFEFRNLFEVFNNLISTNEVNFFFATLCAILLFAGAIAKSAQFPLHVWLPDA-MEGPT 250
Query: 245 SISAMLSGLVIKIGGIYAIARVV-FSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQE 303
ISA++ + GI+ +AR++ IF P I I++ IT+ +G +A+ Q+
Sbjct: 251 PISALIHAATMVAAGIFLVARLLPLFIFIPYIMN-----FIVLIGIITVFLGATLALAQK 305
Query: 304 DMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGV 363
D+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +G
Sbjct: 306 DIKRGLAYSTMSQLGYMMLALGMG-----------SYRNALFHLITHAYSKALLFLGSGS 354
Query: 364 VLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYE 414
V+H + T +N+ + GL K +P T AFL+G ++ G+PPL F SK I
Sbjct: 355 VIHSMETVVGYSPDKSQNMVLMGGLTKHVPITKTAFLLGTLSLCGIPPLACFWSKDEILN 414
Query: 415 SSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
S L++P++ IA TA TA Y+ R+ L TF G
Sbjct: 415 DSWLYSPIVAIIA-WATAGLTAFYMFRIYLLTFEG 448
>emb|CAB64875.1| (AJ236256) NADH dehydrogenase subunit F [Couroupita guianensis]
Length = 710
Score = 183 bits (459), Expect = 5e-45
Identities = 130/395 (32%), Positives = 202/395 (50%), Gaps = 36/395 (9%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM+++IT V + ++YS YM HD G +++ + MLG+
Sbjct: 70 DFSLEFGYLIDPLTSIMLILITTVGIMVLIYSDNYMSHDRGYLRFFAYMSFFSTSMLGLV 129
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ I SY L+ F A K + +LLGI Y
Sbjct: 130 TSSNLIQIYIFWELVGICSYLLIGFWFTRPVAANACQKAFVTNRVGDFGLLLGILGFYWI 189
Query: 191 YGTL-------TMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAP 243
G+ L N +V A+ LF G + KS P+H+WL DA P
Sbjct: 190 TGSFEFRDLFEIFNNLIYNNEVNVLLVILCAILLF-SGAVAKSAQFPLHVWLPDA-MEGP 247
Query: 244 SSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQE 303
+ ISA++ + GI+ +AR++ +F I P T+ +I +I ITL +G +A+ Q+
Sbjct: 248 TPISALIHAATMVAAGIFLVARLL-PLF--IIIPYTMNFISLI-GIITLFLGATLALAQK 303
Query: 304 DMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGV 363
D+KR LAYS+ Q+GY++L LG+G + A++H + HA KALLFL +G
Sbjct: 304 DIKRGLAYSTXXQLGYMMLALGMG-----------SYRTALFHLITHAYSKALLFLGSGS 352
Query: 364 VLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYE 414
V+H + T +N+ + GL K +P T AFL+G ++ G+PPL F SK I
Sbjct: 353 VIHSMETVVGYSPDKSQNMVLMGGLTKHVPITKTAFLLGTLSLCGIPPLACFWSKDEILN 412
Query: 415 SSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
S L++P+ IA TA TA Y+ R+ L TF G
Sbjct: 413 DSWLYSPIFAMIA-WSTAGLTAFYMFRIYLLTFEG 446
>gb|AAF78999.1| (L75912) NADH dehydrogenase F [Vriesea espinosae]
Length = 693
Score = 183 bits (459), Expect = 5e-45
Identities = 124/394 (31%), Positives = 205/394 (51%), Gaps = 34/394 (8%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V + ++YS +YM HD G +++ + MLG+
Sbjct: 71 DFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDKYMYHDQGYLRFFAYMSFFNTSMLGLV 130
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 131 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWI 190
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+L YL ++ + ++ A + +L G + KS P+H+WL DA P+
Sbjct: 191 TGSLEFRYLLEITNNLIQNNGVNSLFATLCASLLFVGAVAKSAQFPLHVWLPDA-MEGPT 249
Query: 245 SISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQED 304
ISA++ + GI+ +AR++ +F + P + +I +I ITL++G +A+ Q D
Sbjct: 250 PISALIHAATMVAAGIFLVARLL-PLF--IVIPYIMNFISLI-GVITLLLGATLALAQRD 305
Query: 305 MKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVV 364
+K+ LAYS++ Q+GYI+L LGIG + A++H + HA KALLFL +G +
Sbjct: 306 IKKSLAYSTMSQLGYIMLALGIG-----------SYRAALFHLITHAYSKALLFLGSGSI 354
Query: 365 LHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES 415
+H + ++N+ + GL + +P T FL+G ++ G+PPL F SK I
Sbjct: 355 IHSMEPIVGYSPDKSQNMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSKDDILND 414
Query: 416 SALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
S L++P+ IA TA TA Y+ RV L TF G
Sbjct: 415 SWLYSPIFAVIAYF-TAGLTAFYMFRVYLLTFDG 447
>pir||T13767 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Teucridium
parvifolium chloroplast (fragment)
Length = 696
Score = 183 bits (459), Expect = 5e-45
Identities = 121/387 (31%), Positives = 195/387 (50%), Gaps = 38/387 (9%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM+++IT V + ++YS YM HD G +++ + MLG+
Sbjct: 70 DFSLEFGYLIDPLTSIMLMLITTVGIMVLIYSDNYMSHDQGYLRFFAYMSFFSTSMLGLV 129
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 130 TSSNLIQIYIFWELVGVCSYLLIGFWFTRPPAANACQKAFVTNRVGDFGLLLGILGFYWI 189
Query: 191 YGTL-------TMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAP 243
G+ + L N T V A LF G + KS P+H+WL DA P
Sbjct: 190 TGSFEFRDLFEILNNLIYNNEVNFTFVTLCAALLFAGAVA-KSAQFPLHVWLPDA-MEGP 247
Query: 244 SSISAMLSGLVIKIGGIYAIARV--VFSIFWPAINPATVGWIIIIFACITLIVGNAMAVV 301
+ ISA++ + GI+ +AR+ +F + +N +I + ITL++G +A+
Sbjct: 248 TPISALIHAATMAAAGIFLVARLLPLFIVIPYIMN------LISVIGAITLLLGATLALA 301
Query: 302 QEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVA 361
Q+D+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +
Sbjct: 302 QKDIKRGLAYSTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSKALLFLGS 350
Query: 362 GVVLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLI 412
G V+H + T +N+ + GL K +P T +FL+G ++ G+PPL F SK I
Sbjct: 351 GSVIHSMETIVGYSPDKSQNMVLMGGLTKHVPITKTSFLLGTLSLCGIPPLACFWSKDEI 410
Query: 413 YESSALFNPLLGAIAIIGTAFCTAAYV 439
S L++P+ IA TA TA Y+
Sbjct: 411 LNDSWLYSPIFAIIA-WATAGLTAFYM 436
>gb|AAF78998.1| (L75913) NADH dehydrogenase F [Vriesea gladioliflora]
Length = 693
Score = 183 bits (459), Expect = 5e-45
Identities = 124/394 (31%), Positives = 205/394 (51%), Gaps = 34/394 (8%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V + ++YS +YM HD G +++ + MLG+
Sbjct: 71 DFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDKYMYHDQGYLRFFAYMSFFNTSMLGLV 130
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 131 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWI 190
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+L YL ++ + ++ A + +L G + KS P+H+WL DA P+
Sbjct: 191 TGSLEFRYLLEITNNLIQNNGVNSLFATLCASLLFVGAVAKSAQFPLHVWLPDA-MEGPT 249
Query: 245 SISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQED 304
ISA++ + GI+ +AR++ +F + P + +I +I ITL++G +A+ Q D
Sbjct: 250 PISALIHAATMVAAGIFLVARLL-PLF--IVIPYIMNFISLI-GVITLLLGATLALAQRD 305
Query: 305 MKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVV 364
+K+ LAYS++ Q+GYI+L LGIG + A++H + HA KALLFL +G +
Sbjct: 306 IKKSLAYSTMSQLGYIMLALGIG-----------SYRAALFHLITHAYSKALLFLGSGSI 354
Query: 365 LHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES 415
+H + ++N+ + GL + +P T FL+G ++ G+PPL F SK I
Sbjct: 355 IHSMEPIVGYSPDKSQNMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSKDDILND 414
Query: 416 SALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
S L++P+ IA TA TA Y+ RV L TF G
Sbjct: 415 SWLYSPIFAVIAYF-TAGLTAFYMFRVYLLTFDG 447
>gb|AAF79007.1| (L75937) NADH dehydrogenase F [Tillandsia secunda]
Length = 655
Score = 183 bits (459), Expect = 5e-45
Identities = 124/394 (31%), Positives = 205/394 (51%), Gaps = 34/394 (8%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V + ++YS +YM HD G +++ + MLG+
Sbjct: 33 DFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDKYMYHDQGYLRFFAXMSFFNTSMLGLV 92
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 93 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWI 152
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+L YL ++ + ++ A + +L G + KS P+H+WL DA P+
Sbjct: 153 TGSLEFRYLLEITNNLIQNNGVNSLFATLCASLLFVGAVAKSAQFPLHVWLPDA-MEGPT 211
Query: 245 SISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQED 304
ISA++ + GI+ +AR++ +F + P + +I +I ITL++G +A+ Q D
Sbjct: 212 PISALIHAATMVAAGIFLVARLL-PLF--IVIPYIMNFISLI-GVITLLLGATLALAQRD 267
Query: 305 MKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVV 364
+K+ LAYS++ Q+GYI+L LGIG + A++H + HA KALLFL +G +
Sbjct: 268 IKKSLAYSTMSQLGYIMLALGIG-----------SYRAALFHLITHAYSKALLFLGSGSI 316
Query: 365 LHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES 415
+H + ++N+ + GL + +P T FL+G ++ G+PPL F SK I
Sbjct: 317 IHSMEPIVGYSPDKSQNMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSKDDILND 376
Query: 416 SALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
S L++P+ IA TA TA Y+ RV L TF G
Sbjct: 377 SWLYSPIFAVIAYF-TAGLTAFYMFRVYLLTFDG 409
>gb|AAA64500.1| (U21846) NADH dehydrogenase F [Arundinaria gigantea]
Length = 703
Score = 182 bits (458), Expect = 7e-45
Identities = 140/466 (30%), Positives = 229/466 (49%), Gaps = 45/466 (9%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVYA 60
LP +I+ + F + ++ + IWA ++ ++ + + + +G +I
Sbjct: 7 LPLPVIMSM--GFGLILIPTATKNLRRIWAFPCVLLLSIAMVFSVHLSIQQINGSSIYQY 64
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 65 LWSWTV--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYIS 122
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
MLG+ + ++ Y F E++ + SY L+ F A K + +
Sbjct: 123 FFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGL 182
Query: 181 LLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPVH 232
LLGI + G+L L K++ N + A LFLG + KS P+H
Sbjct: 183 LLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPLH 240
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ + GI+ +AR++ +F I+ + I + ITL
Sbjct: 241 VWLPDA-MEGPTPISALIHAATMVAAGIFLLARLL-PLF---ISLPLIMSFISLVGTITL 295
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 296 FLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAY 344
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G ++H + ++N+ + GL K +P T FL G ++ G+PPL
Sbjct: 345 SKALLFLGSGSIIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPPL 404
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 405 ACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 449
>gb|AAA68607.1| (U27296) NADH dehydrogenase F [Chasmanthium laxum var.
sessiliflorum]
Length = 701
Score = 182 bits (458), Expect = 7e-45
Identities = 141/466 (30%), Positives = 234/466 (49%), Gaps = 46/466 (9%)
Query: 4 LPFIIIIPL-FGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVY 59
LP +I+ + FG F +P + + IWA ++ ++ + + + +G +I
Sbjct: 6 LPLPVIMSMGFGLFLIPTATK---NLRRIWAFPSVLLLSIAMVFSVHLSIQQINGSSIYQ 62
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 63 YLWSWTI--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYI 120
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 121 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 180
Query: 180 VLLGIALLYGQYGTLTMGYLAVKMSEN-------PTIVAKIALALFLGGLLFKSGAAPVH 232
+LLGI + G+L L K++ N ++++ + L G + KS P+H
Sbjct: 181 LLLGILGFFWITGSLEFRDL-FKIANNWIPNNGMNSLLSTLCAFLLFLGAVAKSAQFPLH 239
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ ++ GI+ +AR++ +F I+ + I + ITL
Sbjct: 240 VWLPDA-MEGPTPISALIHATMV-AAGIFLLARLL-PLF---ISLPLIMSFISLVGTITL 293
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 294 FLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAY 342
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G ++H + ++N+ + GL K +P T FL G ++ G+PPL
Sbjct: 343 SKALLFLGSGSIIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITKTTFLCGTLSLCGIPPL 402
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I +S L++P LG IA TA TA Y+ R+ L TF G
Sbjct: 403 ACFWSKDEILSNSWLYSPFLGIIASF-TAGLTAFYMFRIYLLTFDG 447
>gb|AAD26243.1| (AF117426) NADH dehydrogenase [Sorghum leiocladum]
Length = 696
Score = 182 bits (458), Expect = 7e-45
Identities = 144/458 (31%), Positives = 227/458 (49%), Gaps = 48/458 (10%)
Query: 13 FGAFSMPIVSLLKGKAKEIWA----TIISFATLIVGIEVFREVWSGGTIVYALGSETPFG 68
FG F +P + + IWA ++S A ++ + + + +G +I L S T
Sbjct: 8 FGLFLIPTATK---NLRRIWAFPSILLLSIA-MVFSLHLSIQQINGSSIYQYLWSWTI-- 61
Query: 69 KADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLG 128
DF + + VD +IM+++IT V L ++YS +YM HD G +++ I MLG
Sbjct: 62 NNDFSLEFGYLVDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYISFFNTSMLG 121
Query: 129 IAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLY 188
+ + ++ Y F E++ + SY L+ F A K + +LLGI +
Sbjct: 122 LVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFF 181
Query: 189 GQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHP 240
G+L L K++ N + A LFLG + KS P+H+WL DA
Sbjct: 182 WITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPLHVWLPDA-M 238
Query: 241 AAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAV 300
P+ ISA++ + GI+ +AR++ +F I+ + I + ITL +G +A+
Sbjct: 239 EGPTPISALIHAATMVAAGIFLLARLL-PLF---ISLPLIMSFISLVGTITLFLGATLAL 294
Query: 301 VQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLV 360
Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA KALLFL
Sbjct: 295 AQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAYSKALLFLG 343
Query: 361 AGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWL 411
+G V+H + ++N+ + GL K +P T FL G ++ G+PPL F SK
Sbjct: 344 SGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIPPLACFWSKDE 403
Query: 412 IYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 404 ILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 440
>gb|AAF25170.1|AF182342_1 (AF182342) NADH dehydrogenase [Shibataea kumasaca]
Length = 705
Score = 182 bits (458), Expect = 7e-45
Identities = 140/466 (30%), Positives = 229/466 (49%), Gaps = 45/466 (9%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVYA 60
LP +I+ + F + ++ + IWA ++ ++ + + + +G +I
Sbjct: 6 LPLPVIMSM--GFGLILIPTATKNLRRIWAFPCVLLLSIAMVFSVHLSIQQINGSSIYQY 63
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 64 LWSWTV--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYIS 121
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
MLG+ + ++ Y F E++ + SY L+ F A K + +
Sbjct: 122 FFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGL 181
Query: 181 LLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPVH 232
LLGI + G+L L K++ N + A LFLG + KS P+H
Sbjct: 182 LLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPLH 239
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ + GI+ +AR++ +F I+ + I + ITL
Sbjct: 240 VWLPDA-MEGPTPISALIHAATMVAAGIFLLARLL-PLF---ISLPLIMSFISLVGTITL 294
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 295 FLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAY 343
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G ++H + ++N+ + GL K +P T FL G ++ G+PPL
Sbjct: 344 SKALLFLGSGSIIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPPL 403
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 404 ACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 448
>gb|AAF37201.1| (AF191812) NADH dehydrogenase subunit F [Carex scirpoidea]
Length = 682
Score = 182 bits (458), Expect = 7e-45
Identities = 131/449 (29%), Positives = 207/449 (45%), Gaps = 39/449 (8%)
Query: 10 IPLFGAFSMPIVSLLKGKAKEIWATIISF---ATLIVGIEVFREVWSGGTIVYALGSETP 66
+P+ + ++ + IWA F T+I + + +G I L S T
Sbjct: 5 VPISIGLGLLLIPTAIKNIRRIWAFPSIFFLIITMIFSLNFSIQQINGSLIYQYLWSWTI 64
Query: 67 FGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGM 126
DF + + +D +IM+ +IT V ++YS YM HD +++ + + M
Sbjct: 65 --NKDFSLEFGYLIDSLTSIMLTLITTVGITVLIYSDNYMSHDQAYSRFFAYLNLFNASM 122
Query: 127 LGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIAL 186
LG+ + ++ Y+F EI+ I SY L+ F A K + +LLGI
Sbjct: 123 LGLVTSSNLIQIYIFWEIVXICSYLLIXFWFTRPLXANACQKAFVXNXIGXFGLLLGIXX 182
Query: 187 LYGQYGTLTMGY-------LAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAH 239
Y G+ Y L K N LF+G + KS P+H+WL DA
Sbjct: 183 XYWIIGSFEFRYLFEITNNLIQKNGVNSLFTTLCTFLLFVGAIA-KSAQFPLHIWLPDA- 240
Query: 240 PAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMA 299
P+ SA++ + G++ +AR +F + + II ITL++G +A
Sbjct: 241 MEGPTPXSALIHAATMVAAGVFLVAR----LFPLLLITPNIMHIISSIGLITLVLGATLA 296
Query: 300 VVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFL 359
+ Q D+KR LAYS++ Q+GYI+L LGIG A++H + HA KALLFL
Sbjct: 297 LAQLDIKRSLAYSTMSQLGYIILALGIG-----------XSRAALFHLITHAYSKALLFL 345
Query: 360 VAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKW 410
+G ++H + +N+ + GL K +P T AFL+G ++ G+PPL F SK
Sbjct: 346 GSGSIIHSMEPVVGYSPYKNQNMVLMGGLTKYIPITRTAFLLGTLSLCGIPPLACFWSKD 405
Query: 411 LIYESSALFNPLLGAIAIIGTAFCTAAYV 439
I +S L++P+ G I T TA Y+
Sbjct: 406 EILSNSWLYSPIFGIITYFTTGL-TAFYM 433
>gb|AAF25178.1|AF182350_1 (AF182350) NADH dehydrogenase [Otatea acuminata]
Length = 702
Score = 182 bits (458), Expect = 7e-45
Identities = 140/465 (30%), Positives = 226/465 (48%), Gaps = 43/465 (9%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVYA 60
LP +I+ + F + ++ + IWA ++ ++ + + + +G +I
Sbjct: 6 LPLPVIMSM--GFGLILIPTATKNLRRIWAFPSVLLLSIAMVFSVHLSIQQINGSSIYQY 63
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 64 LWSWTV--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYIS 121
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
MLG+ + ++ Y F E++ + SY L+ F A K + +
Sbjct: 122 FFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGL 181
Query: 181 LLGIALLYGQYGTLTMGYL-------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHM 233
LLGI + G+L L N + A LFLG + KS P+H+
Sbjct: 182 LLGILGFFWITGSLEFRDLFKIANNWIPNSGINSLLTTLCAFLLFLGAVA-KSAQFPLHV 240
Query: 234 WLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLI 293
WL DA P+ ISA++ + GI+ +AR++ +F I+ + I + ITL
Sbjct: 241 WLPDA-MEGPTPISALIHATXMVAAGIFLLARLL-PLF---ISLPLIMSFISLVGTITLF 295
Query: 294 VGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALM 353
+G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 296 LGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAYS 344
Query: 354 KALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLN 404
KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+PPL
Sbjct: 345 KALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRSTFLWGTLSLCGIPPLA 404
Query: 405 GFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 405 CFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 448
>gb|AAD26249.1| (AF117432) NADH dehydrogenase [Sorghum versicolor]
Length = 698
Score = 182 bits (458), Expect = 7e-45
Identities = 148/468 (31%), Positives = 236/468 (49%), Gaps = 51/468 (10%)
Query: 5 PFIIIIPL-FGAFSMPIVSLLKGKAKEIWA----TIISFATLIVGIEVFREVWSGGTIVY 59
P +I+ + FG F +P + + IWA ++S A ++ + + + +G +I
Sbjct: 1 PLPVIMSMGFGLFLIPTATK---NLRRIWAFPSILLLSIA-MVFSLHLSIQQINGSSIYQ 56
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
L S T DF + + VD +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 57 YLWSWTI--NNDFSLEFGYLVDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYI 114
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
MLG+ + ++ Y F E++ + SY L+ F T +G + FV + F
Sbjct: 115 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWF-TRPIAASGCQKAFVTNRVGDF 173
Query: 180 -VLLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAP 230
+LLGI + G+L L K++ N + A LFLG + KS P
Sbjct: 174 GLLLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFP 231
Query: 231 VHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACI 290
+H+WL DA P+ ISA++ + GI+ +AR++ +F I+ + I + I
Sbjct: 232 LHVWLPDA-MEGPTPISALIHAATMVAAGIFLLARLL-PLF---ISLPLIMSFISLVGTI 286
Query: 291 TLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNH 350
TL +G +A+ Q D+KR L YS++ Q+GY++L LGIG + A++H + H
Sbjct: 287 TLFLGATLALAQRDIKRSLXYSTMSQLGYMMLALGIG-----------SYQAALFHLITH 335
Query: 351 ALMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMP 401
A KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+P
Sbjct: 336 AYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIP 395
Query: 402 PLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
PL F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 396 PLACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 442
>gb|AAF25176.1|AF182348_1 (AF182348) NADH dehydrogenase [Melocanna baccifera]
Length = 702
Score = 182 bits (458), Expect = 7e-45
Identities = 141/466 (30%), Positives = 229/466 (48%), Gaps = 45/466 (9%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVYA 60
LP +I+ + F + ++ + IWA ++ ++ + + + +G +I
Sbjct: 6 LPLPVIMSM--GFGLILIPTATKNLRRIWAFPSVLLLSIAMVFSVHLSIQQINGSSIYQY 63
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 64 LWSWTV--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYIS 121
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
MLG+ + ++ Y F E++ + SY L+ F A K + +
Sbjct: 122 FFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGL 181
Query: 181 LLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPVH 232
LLGI + G+L L K++ N + A LFLG + KS P+H
Sbjct: 182 LLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPLH 239
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ + GI+ +AR++ +F I+ + I + ITL
Sbjct: 240 VWLPDA-MEGPTPISALIHAAXMVAAGIFLLARLL-PLF---ISLPLIMSFISLVGTITL 294
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 295 FLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAY 343
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+PPL
Sbjct: 344 SKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPPL 403
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 404 ACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 448
>emb|CAB85675.1| (AJ238344) NADH dehydrogenase [Quintinia verdonii]
Length = 740
Score = 182 bits (458), Expect = 7e-45
Identities = 122/396 (30%), Positives = 200/396 (49%), Gaps = 38/396 (9%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V + ++YS YM HD G +++ + MLG+
Sbjct: 71 DFSLEFGYLIDPLTSIMSILITTVGIMVLVYSDNYMSHDQGYLRFFAYMSFFSTSMLGLV 130
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 131 TSSNLIQIYIFWELVGMCSYLLIGFWFTRSVAANACQKAFVTNRVGDFGLLLGILGFYWI 190
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ L + +E + + L G + KS P+H+WL DA P+
Sbjct: 191 TGSFEFKDLFEIFNNLIYNNEVNFLFVTLCAVLLFAGAVAKSAQFPLHVWLPDA-MEGPT 249
Query: 245 SISAMLSGLVIKIGGIYAIARV--VFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQ 302
ISA++ + GI+ +AR+ +F + P +N +I + IT+++G +A+ Q
Sbjct: 250 PISALIHAATMVAAGIFLVARLLPIFIVIPPIMN------LISLVGIITVLLGATLALAQ 303
Query: 303 EDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAG 362
+D+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +G
Sbjct: 304 KDIKRGLAYSTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSKALLFLGSG 352
Query: 363 VVLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIY 413
++H + T +N+ + GL K +P T AFL+G ++ G+PPL F SK I
Sbjct: 353 SIIHSMETIVGYSPKKSQNMVVMGGLTKHVPITKTAFLLGTLSLCGIPPLACFWSKDEIL 412
Query: 414 ESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
S L++P+ IA TA TA Y+ R+ L TF G
Sbjct: 413 NDSWLYSPIFAIIA-WSTAGLTAFYMFRIYLLTFEG 447
>gb|AAF79015.1| (L75935) NADH dehydrogenase F [Guzmania sanguinea]
Length = 691
Score = 182 bits (458), Expect = 7e-45
Identities = 123/396 (31%), Positives = 203/396 (51%), Gaps = 38/396 (9%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V + ++YS +YM HD G +++ + MLG+
Sbjct: 69 DFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDKYMYHDQGYLRFFAYMSFFNTSMLGLV 128
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 129 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWI 188
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+L YL ++ + ++ A + +L G + KS P+H+WL DA P+
Sbjct: 189 TGSLEFRYLLEITNNLIQNNGVNSLFATLCASLLFVGAVAKSAQFPLHVWLPDA-MEGPT 247
Query: 245 SISAMLSGLVIKIGGIYAIARV--VFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQ 302
ISA++ + GI+ +AR+ +F + +N +I + ITL++G +A+ Q
Sbjct: 248 PISALIHAATMVAAGIFLVARLLPLFIVIPYIMN------LISLIGVITLLLGATLALAQ 301
Query: 303 EDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAG 362
D+K+ LAYS++ Q+GYI+L LGIG + A++H + HA KALLFL +G
Sbjct: 302 RDIKKSLAYSTMSQLGYIMLALGIG-----------SYRAALFHLITHAYSKALLFLGSG 350
Query: 363 VVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIY 413
++H + ++N+ + GL + +P T FL+G ++ G+PPL F SK I
Sbjct: 351 SIIHSMEPIVGYSPDKSQNMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSKDDIL 410
Query: 414 ESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
S L++P+ IA TA TA Y+ RV L TF G
Sbjct: 411 NDSWLYSPIFAVIAYF-TAGLTAFYMFRVYLLTFDG 445
>gb|AAF79000.1| (L75911) NADH dehydrogenase F [Vriesea vittata]
Length = 693
Score = 182 bits (458), Expect = 7e-45
Identities = 124/394 (31%), Positives = 205/394 (51%), Gaps = 34/394 (8%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V + ++YS +YM HD G +++ + MLG+
Sbjct: 71 DFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDKYMYHDQGYLRFFAYMSFFNTSMLGLV 130
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 131 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWI 190
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+L YL ++ + ++ A + +L G + KS P+H+WL DA P+
Sbjct: 191 TGSLEFRYLLEITNNLIQNNGVNSLFATLCASLLFVGAVAKSAQFPLHVWLPDA-MEGPT 249
Query: 245 SISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQED 304
ISA++ + GI+ +AR++ +F + P + +I +I ITL++G +A+ Q D
Sbjct: 250 PISALIHAATMVXXGIFLVARLL-PLF--IVIPYIMNFISLI-GVITLLLGATLALAQRD 305
Query: 305 MKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVV 364
+K+ LAYS++ Q+GYI+L LGIG + A++H + HA KALLFL +G +
Sbjct: 306 IKKSLAYSTMSQLGYIMLALGIG-----------SYRAALFHLITHAYSKALLFLGSGSI 354
Query: 365 LHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES 415
+H + ++N+ + GL + +P T FL+G ++ G+PPL F SK I
Sbjct: 355 IHSMEPIVGYSPDKSQNMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSKDDILND 414
Query: 416 SALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
S L++P+ IA TA TA Y+ RV L TF G
Sbjct: 415 SWLYSPIFAVIAYF-TAGLTAFYMFRVYLLTFDG 447
>gb|AAA64702.1| (U21984) NADH dehydrogenase F [Thysanolaena maxima]
Length = 710
Score = 182 bits (458), Expect = 7e-45
Identities = 139/457 (30%), Positives = 225/457 (48%), Gaps = 45/457 (9%)
Query: 4 LPFIIIIPL-FGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVY 59
LP +I+ + FG F +P + + IWA ++ ++ + + + +G +I
Sbjct: 6 LPLPVIMSIGFGLFLIPTATK---NLRRIWAFPSVLLLSIAMVYSVHLSIQQINGSSIYQ 62
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 63 YLWSWTI--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYI 120
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 121 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 180
Query: 180 VLLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPV 231
+LLGI + G+L L K++ N + A LFLG + KS P+
Sbjct: 181 LLLGILGFFWITGSLEFRDL-FKITNNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPL 238
Query: 232 HMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACIT 291
H+WL DA P+ ISA++ + GI+ +AR++ +F I+ + I + IT
Sbjct: 239 HVWLPDA-MEGPTPISALIHAATMVAAGIFLLARLL-PLF---ISLPFIMSFISLVGTIT 293
Query: 292 LIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHA 351
L +G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 294 LFLGATLALAQRDIKRNLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHA 342
Query: 352 LMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPP 402
KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+PP
Sbjct: 343 YSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPP 402
Query: 403 LNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV 439
L F SK I +S L++P G IA TA TA Y+
Sbjct: 403 LACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYM 438
>gi|11497577 NADH dehydrogenase ND5 subunit [Spinacia oleracea]
>gi|7636158|emb|CAB88780.1| (AJ400848) NADH
dehydrogenase ND5 subunit [Spinacia oleracea]
Length = 742
Score = 182 bits (458), Expect = 7e-45
Identities = 123/395 (31%), Positives = 202/395 (51%), Gaps = 36/395 (9%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V+ L ++YS YM HD G +++ + MLG+
Sbjct: 80 DFSLEFGYLMDPLTSIMSMLITTVAILVLIYSDNYMSHDQGYLRFFAYMSFFNTSMLGLV 139
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI LY
Sbjct: 140 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGLYWI 199
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ L +K +E ++ + L G + KS P+H+WL DA P+
Sbjct: 200 TGSFEFRDLFEIFNNLIKNNEVNSLFCILCAFLLFAGAVAKSAQFPLHVWLPDA-MEGPT 258
Query: 245 SISAMLSGLVIKIGGIYAIARVV-FSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQE 303
ISA++ + GI+ +AR++ + P I ++I IT+++G +A+ Q+
Sbjct: 259 PISALIHAATMVAAGIFLVARLLPLFVVIPYIM-----YVISFIGIITVLLGATLALAQK 313
Query: 304 DMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGV 363
D+KR LAY ++ Q+GY++L LG+G + A++H + HA KALLFL +G
Sbjct: 314 DIKRSLAYYTMSQLGYMMLALGMG-----------SYRTALFHLITHAYSKALLFLASGS 362
Query: 364 VLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYE 414
++H +GT +N+ + GL K +P T +FLIG ++ G+PPL F SK I
Sbjct: 363 LIHSMGTIVGYSPDKSQNMVLMGGLTKHVPITKTSFLIGTLSLCGIPPLACFWSKDEILN 422
Query: 415 SSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
S +++P+ IA TA TA Y+ R+ L TF G
Sbjct: 423 DSWVYSPIFAIIAYF-TAGLTAFYMFRIYLLTFEG 456
>gb|AAF79016.1| (L75934) NADH dehydrogenase F [Guzmania rhonhofiana]
Length = 691
Score = 182 bits (458), Expect = 7e-45
Identities = 124/394 (31%), Positives = 205/394 (51%), Gaps = 34/394 (8%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V + ++YS +YM HD G +++ + MLG+
Sbjct: 69 DFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDKYMYHDQGYLRFFAYMSFFNTSMLGLV 128
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 129 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWI 188
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+L YL ++ + ++ A + +L G + KS P+H+WL DA P+
Sbjct: 189 TGSLEFRYLLEITNNLIQNNGVNSLFATLCASLLFVGAVAKSAQFPLHVWLPDA-MEGPT 247
Query: 245 SISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQED 304
ISA++ + GI+ +AR++ +F + P + +I +I ITL++G +A+ Q D
Sbjct: 248 PISALIHXATMVAAGIFLVARLL-PLF--IVIPYIMNFISLI-GVITLLLGATLALAQRD 303
Query: 305 MKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVV 364
+K+ LAYS++ Q+GYI+L LGIG + A++H + HA KALLFL +G +
Sbjct: 304 IKKSLAYSTMSQLGYIMLALGIG-----------SYRAALFHLITHAYSKALLFLGSGSI 352
Query: 365 LHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES 415
+H + ++N+ + GL + +P T FL+G ++ G+PPL F SK I
Sbjct: 353 IHSMEPIVGYSPDKSQNMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSKDDILND 412
Query: 416 SALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
S L++P+ IA TA TA Y+ RV L TF G
Sbjct: 413 SWLYSPIFAVIAYF-TAGLTAFYMFRVYLLTFDG 445
>gb|AAF79018.1| (L75932) NADH dehydrogenase F [Guzmania nicaraguensis]
Length = 691
Score = 182 bits (458), Expect = 7e-45
Identities = 123/396 (31%), Positives = 203/396 (51%), Gaps = 38/396 (9%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V + ++YS +YM HD G +++ + MLG+
Sbjct: 69 DFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDKYMYHDQGYLRFFAYMSFFNTSMLGLV 128
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 129 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGLLLGILGFYWI 188
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+L YL ++ + ++ A + +L G + KS P+H+WL DA P+
Sbjct: 189 TGSLEFRYLLEITNNLIQNNGVNSLFATLCASLLFVGAVAKSAQFPLHIWLPDA-MEGPT 247
Query: 245 SISAMLSGLVIKIGGIYAIARV--VFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQ 302
ISA++ + GI+ +AR+ +F + +N +I + ITL++G +A+ Q
Sbjct: 248 PISALIHAATMVAAGIFLVARLLPLFIVIPYIMN------LISLIGVITLLLGATLALAQ 301
Query: 303 EDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAG 362
D+K+ LAYS++ Q+GYI+L LGIG + A++H + HA KALLFL +G
Sbjct: 302 RDIKKSLAYSTMSQLGYIMLALGIG-----------SYRAALFHLITHAYSKALLFLGSG 350
Query: 363 VVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIY 413
++H + ++N+ + GL + +P T FL+G ++ G+PPL F SK I
Sbjct: 351 SIIHSMEPIVGYSPDKSQNMVLMGGLTRYVPITRTTFLLGTLSLCGIPPLACFWSKDDIL 410
Query: 414 ESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
S L++P+ IA TA TA Y+ RV L TF G
Sbjct: 411 NDSWLYSPIFAVIAYF-TAGLTAFYMFRVYLLTFDG 445
>pir||T13568 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Phaenosperma
globosa chloroplast (fragment) >gi|726176|gb|AAA64210.1|
(U22006) NADH dehydrogenase F [Phaenosperma globosa]
Length = 701
Score = 182 bits (457), Expect = 9e-45
Identities = 142/466 (30%), Positives = 228/466 (48%), Gaps = 45/466 (9%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVYA 60
LP +I+ + F + ++ + IWA ++ ++ I++ + G +I
Sbjct: 5 LPLPVIMSM--GFGLILIPTATKNIRRIWAFPSVLLLSIAMVFSIQLSIQQIKGSSIYQY 62
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
L S T DF + + +D +IM+++IT V L ++YS YM HD G +++ I
Sbjct: 63 LWSWTV--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDGYMSHDEGYLRFFVYIS 120
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
MLG+ + ++ Y F E++ + SY L+ F A K + +
Sbjct: 121 FFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGL 180
Query: 181 LLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPVH 232
LLGI + G+L L K++ N + A LFLG + KS P+H
Sbjct: 181 LLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSVLTTLCAFLLFLGAVA-KSAQFPLH 238
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ + GI+ +AR++ +F I+ + I + ITL
Sbjct: 239 VWLPDA-MEGPTPISALIHAATMVAAGIFLLARLL-PLF---ISLPLIMNFISLVGTITL 293
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 294 FLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAY 342
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+PPL
Sbjct: 343 SKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYIPITRTTFLWGTLSLCGIPPL 402
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 403 ACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 447
>pir||T13409 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Micraira
lazaridisii chloroplast (fragment)
>gi|755837|gb|AAA64777.1| (U21972) NADH dehydrogenase F
[Micraira lazaridisii]
Length = 702
Score = 182 bits (457), Expect = 9e-45
Identities = 145/466 (31%), Positives = 228/466 (48%), Gaps = 46/466 (9%)
Query: 4 LPFIIIIPL-FGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVY 59
LP +I+ + FG F +P + + IWA + L+ + + + G +I
Sbjct: 8 LPLPVIMSMGFGLFLIPTATK---NLRRIWAFPSVLFLSIALVFSVHLSIQQIKGSSIYQ 64
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 65 YLWSWTI--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYI 122
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 123 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 182
Query: 180 VLLGIALLYGQYGTLTMGYL-------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVH 232
+LLGI + G+L L N + A LFLG + KS P+H
Sbjct: 183 LLLGILGFFWITGSLEFRDLFKIANNWIPNNEMNSLLTTLCAFFLFLGAVA-KSAQFPLH 241
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ ++ GI+ +AR++ +F I+ + I + ITL
Sbjct: 242 IWLPDA-MEGPTPISALIHATMV-AAGIFLLARLL-PLF---ISLPLIMSFISLVGTITL 295
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 296 FLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAY 344
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G V+H + ++N+ + GL K +P T AFL G ++ G+PPL
Sbjct: 345 SKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTAFLWGTLSLCGIPPL 404
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 405 ACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 449
>gb|AAA64705.1| (U21987) NADH dehydrogenase F [Zeugites pittieri]
Length = 701
Score = 182 bits (457), Expect = 9e-45
Identities = 141/466 (30%), Positives = 229/466 (48%), Gaps = 46/466 (9%)
Query: 4 LPFIIIIPL-FGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVY 59
LP +I+ + FG F +P + + IWA ++ ++ + + + +G +I
Sbjct: 6 LPLPVIMSMGFGLFLIPTATK---NLRRIWAFPSVLLLSIAMVFSVHLSIQQINGSSIYQ 62
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 63 YLWSWTI--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYI 120
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 121 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 180
Query: 180 VLLGIALLYGQYGTLTMGYL-------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVH 232
+LLGI + G+L L N + A LFLG + KS P+H
Sbjct: 181 LLLGILGFFWITGSLEFRDLFKIANNWIPNTGINSLLTTLFAFLLFLGAVA-KSAQFPLH 239
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ ++ GI+ +AR++ +F I+ + I + +TL
Sbjct: 240 VWLPDA-MEGPTPISALIHATMV-AAGIFLVARLL-PLF---ISLPLIMSFISLVGTVTL 293
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 294 FLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAY 342
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G ++H + ++N+ + GL K +P T FL G ++ G+PPL
Sbjct: 343 SKALLFLGSGSIIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIPPL 402
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 403 ACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 447
>pir||A70414 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoL1 -
Aquifex aeolicus >gi|2983742|gb|AAC07303.1| (AE000734)
NADH dehydrogenase I chain L [Aquifex aeolicus]
Length = 622
Score = 182 bits (457), Expect = 9e-45
Identities = 138/484 (28%), Positives = 237/484 (48%), Gaps = 40/484 (8%)
Query: 8 IIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREVWSGGTIVYALGSETPF 67
+II LFG I L G + A + + +L+V ++ + L P
Sbjct: 18 LIILLFGR---KIGDLGSGIIASVGAGLTTLFSLVVALKAIHS-----PVHVKLYDFLPI 69
Query: 68 GKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTG--LEKYYTLILILELG 125
G ++ + + + D ++M L++TFV+ L +YS+ YM+ + G + K+Y + +
Sbjct: 70 G--NYTLSLGFYFDSLSSLMALVVTFVATLIFVYSIGYMRDEFGKWVFKFYAYLSLFLFA 127
Query: 126 MLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIA 185
ML I ++ ++ + E + +ASY L+ + H+ + +A + + + + GI
Sbjct: 128 MLLIVLSDNLLGIFFGWEGVGLASYLLIGYYHEQKKATKASFEAFVMNRIGDWLFIFGII 187
Query: 186 LLYGQYGTLTMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPSS 245
+ + TL + + K+ E +A L GG + KSG P+H WL +A A P+
Sbjct: 188 YSFYLFKTLEITQIFPKVEEVDKYALGVATMLLFGGAVGKSGQFPLHTWLPNA-MAGPTP 246
Query: 246 ISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQEDM 305
+SA+L + G+Y +AR ++ +F P T+ I++I A IT+ + V D+
Sbjct: 247 VSALLHAATMVAAGVYMVAR-LYPMF--EATPQTLKLIVLIGA-ITMTMAALAGAVHNDI 302
Query: 306 KRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVVL 365
K+++A+S++ Q+GY+ + LG+G GA++H HA KALLFL AG V+
Sbjct: 303 KKIIAFSTMSQLGYMFVALGVG-----------DKGGAMFHLTTHAFFKALLFLAAGAVI 351
Query: 366 ----HELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSALFNP 421
H L ++ ++ GL K MP T AF+IGA ++ G+ P +GF SK I S ++
Sbjct: 352 TAFHHHL--YDIFKMGGLKKYMPVTYVAFMIGALSLAGVFPFSGFWSKDRIVASMYEWSG 409
Query: 422 LLGAIAIIGTAFCTAAYV--RVLFTFFGRPSEKVMKAKD---PGATMLLPIFILVIAIIG 476
+LG + I AF TA Y F GR + + KD M +P+ +L +
Sbjct: 410 VLGVLGTI-VAFITAYYAFREGFLVFHGRERWREIYDKDVHEVEGVMTVPMGLLGFLTVL 468
Query: 477 MGLF 480
GLF
Sbjct: 469 TGLF 472
>gb|AAD26214.1| (AF117397) NADH dehydrogenase [Chionachne koenigii]
Length = 698
Score = 182 bits (457), Expect = 9e-45
Identities = 146/468 (31%), Positives = 232/468 (49%), Gaps = 49/468 (10%)
Query: 4 LPFIIIIPL-FGAFSMPIVSLLKGKAKEIWA----TIISFATLIVGIEVFREVWSGGTIV 58
LP +I+ + FG F +P + + IWA ++S A ++ + + + +G +I
Sbjct: 2 LPLPVIMSMGFGLFFIPTATK---NLRRIWAFPSILLLSIA-MVFSLYLSIQQINGSSIY 57
Query: 59 YALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTL 118
L S T DF + + VD +IM+++IT V L ++YS +YM HD G +++
Sbjct: 58 QYLWSWTI--NNDFSLEFGYLVDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVY 115
Query: 119 ILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASS 178
I MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 116 ISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDF 175
Query: 179 FVLLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAP 230
+LLGI + G+L L K++ N A LFLG + KS P
Sbjct: 176 GLLLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLFTTLCAFLLFLGAVA-KSAQFP 233
Query: 231 VHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACI 290
+H+WL DA P+ ISA++ + GI+ +AR++ +F I+ + I + I
Sbjct: 234 LHVWLPDA-MEGPTPISALIHAATMVAAGIFLLARLL-PLF---ISLPLIMSFISLVGTI 288
Query: 291 TLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNH 350
TL +G +A+ Q D+KR LAYS++ Q+GY++L +GIG + A++H + H
Sbjct: 289 TLFLGATLALAQRDIKRSLAYSTMSQLGYMMLAIGIG-----------SYQAALFHLITH 337
Query: 351 ALMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMP 401
A KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+P
Sbjct: 338 AYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIP 397
Query: 402 PLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
PL F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 398 PLACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 444
>emb|CAB64687.1| (AJ236238) NADH dehydrogenase subunit F [Actinidia arguta]
Length = 701
Score = 182 bits (457), Expect = 9e-45
Identities = 135/465 (29%), Positives = 230/465 (49%), Gaps = 40/465 (8%)
Query: 4 LPFIII-IPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVY 59
+PF+ + +P+ + I + +WA ++ +I+ I++F + + +I
Sbjct: 2 IPFVPLPVPVLIGVGLFIFPTATKNLRRMWAFQSVLLLSIVMILSIDLFIQQLNSSSIYQ 61
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
+ S DF + + +D +IM ++IT V L ++YS YM HD G +++ +
Sbjct: 62 CIWSWII--NNDFSLEFGYLIDPLTSIMSILITTVGILVLIYSDNYMFHDQGYLRFFAYM 119
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
+ MLG+ + ++ Y+F E++ + SY L+ F A K +
Sbjct: 120 SLFSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFG 179
Query: 180 VLLGIALLYGQYGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHM 233
+LLGI Y G+ L + +E + + L G + KS P+H+
Sbjct: 180 LLLGILGFYWIIGSFEFRDLFEIFNNLISNNEVNVLFVILCAVLLFAGAVAKSAQFPLHV 239
Query: 234 WLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLI 293
WL DA P+ ISA++ + GI+ +AR +F +F + P + +I +I IT+
Sbjct: 240 WLPDA-MEGPTPISALIHAATMVAAGIFLVAR-LFPLF--IVIPYIMNFISLI-GIITVF 294
Query: 294 VGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALM 353
+G +A+ Q+D+KR LAYS++ Q+GY++L LG+G + A++H + HA
Sbjct: 295 LGATLALAQKDIKRGLAYSTMSQLGYMMLALGMG-----------SYRTALFHLITHAYS 343
Query: 354 KALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLN 404
KALLFL +G V+H + ++N+ + GL K +P T AFL+G ++ G+PPL
Sbjct: 344 KALLFLGSGSVIHSMERVVGYSPDKSQNMVLMGGLTKHVPITKTAFLLGTLSLCGIPPLA 403
Query: 405 GFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I S L++P+ IA TA TA Y+ R+ L TF G
Sbjct: 404 CFWSKDEILNDSWLYSPIFAIIA-WSTAGLTAFYMFRIYLLTFEG 447
>gb|AAF25180.1|AF182352_1 (AF182352) NADH dehydrogenase [Nastus elatus]
Length = 702
Score = 182 bits (457), Expect = 9e-45
Identities = 142/467 (30%), Positives = 227/467 (48%), Gaps = 47/467 (10%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVYA 60
LP +I+ + F + ++ + IWA ++ ++ + + + +G +I
Sbjct: 6 LPLPVIMSM--GFGLILIPTATKNLRRIWAFPSVLLLSIAMVFSVHLSIQQINGSSIYQY 63
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 64 LWSWTV--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYIS 121
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
MLG+ + ++ Y F E++ + SY L+ F A K + +
Sbjct: 122 FFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGL 181
Query: 181 LLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPVH 232
LLGI + G+L L K++ N + A LFLG + KS P+H
Sbjct: 182 LLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPLH 239
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPA-INPATVGWIIIIFACIT 291
+WL DA P+ ISA++ + GI+ +AR F P I+ + I + IT
Sbjct: 240 VWLPDA-MEGPTPISALIHAAXMVAAGIFLLAR-----FLPLFISLPLIMSFISLVGTIT 293
Query: 292 LIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHA 351
L +G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 294 LFLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHA 342
Query: 352 LMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPP 402
KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+PP
Sbjct: 343 YSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPP 402
Query: 403 LNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
L F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 403 LACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 448
>gb|AAD52737.1|AF123679_1 (AF123679) NADH dehydrogenase [Calceolaria sp. dePamphilis 90.203]
Length = 700
Score = 182 bits (457), Expect = 9e-45
Identities = 139/475 (29%), Positives = 233/475 (48%), Gaps = 60/475 (12%)
Query: 4 LPFIII-IPLFGAFSMPIVSLLKGKAKEIWA--------TIISFAT-----LIVGIEVFR 49
+PFI + +P+ + + + +WA ++ FAT LI +++
Sbjct: 3 IPFIPLPVPILIGVGLLLFPTATKSIRRMWAFPSILLLSIVMIFATNLSIQLINSSSIYQ 62
Query: 50 EVWSGGTIVYALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHD 109
VWS + L + DF + + +D +IM ++IT V + ++YS YM HD
Sbjct: 63 YVWS-----WTLNN-------DFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMAHD 110
Query: 110 TGLEKYYTLILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKY 169
G +++ + MLG+ + ++ Y+F E++ + SY L+ F A K
Sbjct: 111 QGYLRFFAYMSFFSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPLAANACQKA 170
Query: 170 MFVGSLASSFVLLGIALLYGQYGTLTMGYL------AVKMSENPTIVAKIALALFLGGLL 223
+ +LLGI Y G+ L + ++ +A + AL G +
Sbjct: 171 FVTNRVGDFGLLLGIFGFYWITGSFEFRDLFEIFNNLILNNQINYPIATLCAALLFAGAV 230
Query: 224 FKSGAAPVHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWI 283
KS P+H+WL DA P+ ISA++ + GI+ +AR++ +F + P + +I
Sbjct: 231 AKSAQFPLHVWLPDA-MEGPTPISALIHAATMVAAGIFLVARLL-PLF--IVIPYIMNFI 286
Query: 284 IIIFACITLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGA 343
+I IT+++G +A+ Q+D+KR LAYS++ Q+GY++L LG+G + A
Sbjct: 287 ALI-GIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMG-----------SYQSA 334
Query: 344 IYHTVNHALMKALLFLVAGVVLHELGT---------RNLNELSGLAKTMPKTTFAFLIGA 394
++H + HA KALLFL +G V+H + T +N+ + GL K +P T +FLIG
Sbjct: 335 LFHLITHAYSKALLFLGSGSVIHSMETVVGYSPDKSQNMVLMGGLTKHVPITKISFLIGT 394
Query: 395 AAIVGMPPLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
++ G+PPL F SK I S L++P+ IA TA TA Y+ R+ L TF G
Sbjct: 395 LSLCGIPPLACFWSKEEILNDSWLYSPIFAIIA-WATAGLTAFYMFRIYLLTFEG 448
>gb|AAA64703.1| (U21985) NADH dehydrogenase F [Zea mays]
Length = 701
Score = 182 bits (457), Expect = 9e-45
Identities = 147/468 (31%), Positives = 234/468 (49%), Gaps = 50/468 (10%)
Query: 4 LPFIIIIPL-FGAFSMPIVSLLKGKAKEIWA----TIISFATLIVGIEVFREVWSGGTIV 58
LP +I+ + FG F +P + + IWA ++S A ++ + + + +G +I
Sbjct: 6 LPLPVIMSMGFGLFLIPTATK---NLRRIWAFPSILLLSIA-MVFSLHLSIQQINGSSIY 61
Query: 59 YALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTL 118
L S T DF + + VD +IM+++IT V L ++YS +YM HD G +++
Sbjct: 62 QYLWSWTI--NNDFSLEFGYLVDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVY 119
Query: 119 ILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASS 178
I MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 120 ISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDF 179
Query: 179 FVLLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAP 230
+LLGI + G+L L K++ N + A LFLG + KS P
Sbjct: 180 GLLLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFP 237
Query: 231 VHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACI 290
+H+WL DA P+ ISA++ ++ GI+ +AR++ +F I+ + I + I
Sbjct: 238 LHVWLPDA-MEGPTPISALIHAAMV-AAGIFLLARLL-PLF---ISLPLIMSFISLIGTI 291
Query: 291 TLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNH 350
TL +G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + H
Sbjct: 292 TLFLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITH 340
Query: 351 ALMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMP 401
A KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+P
Sbjct: 341 AYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIP 400
Query: 402 PLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
PL F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 401 PLACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 447
>gb|AAF25172.1|AF182344_1 (AF182344) NADH dehydrogenase [Sasa variegata]
Length = 702
Score = 182 bits (457), Expect = 9e-45
Identities = 140/466 (30%), Positives = 229/466 (49%), Gaps = 45/466 (9%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVYA 60
LP +I+ + F + ++ + IWA ++ ++ + + + +G +I
Sbjct: 6 LPLPVIMSM--GFGLILIPTATKNLRRIWAFPCVLLLSIAMVFSVHLSIQQINGSSIYQY 63
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 64 LWSWTV--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYIS 121
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
MLG+ + ++ Y F E++ + SY L+ F A K + +
Sbjct: 122 FFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGL 181
Query: 181 LLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPVH 232
LLGI + G+L L K++ N + A LFLG + KS P+H
Sbjct: 182 LLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPLH 239
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ + GI+ +AR++ +F I+ + I + ITL
Sbjct: 240 VWLPDA-MEGPTPISALIHAAXMVAAGIFLLARLL-PLF---ISLPLIMSFISLVGTITL 294
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 295 FLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAY 343
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G ++H + ++N+ + GL K +P T FL G ++ G+PPL
Sbjct: 344 SKALLFLGSGSIIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPPL 403
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 404 ACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 448
>gb|AAF25174.1|AF182346_1 (AF182346) NADH dehydrogenase [Yushania exilis]
Length = 702
Score = 182 bits (457), Expect = 9e-45
Identities = 140/466 (30%), Positives = 229/466 (49%), Gaps = 45/466 (9%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVYA 60
LP +I+ + F + ++ + IWA ++ ++ + + + +G +I
Sbjct: 6 LPLPVIMSM--GFGLILIPTATKNLRRIWAFPCVLLLSIAMVFSVHLSIQQINGSSIYQY 63
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 64 LWSWTV--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYIS 121
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
MLG+ + ++ Y F E++ + SY L+ F A K + +
Sbjct: 122 FFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGL 181
Query: 181 LLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPVH 232
LLGI + G+L L K++ N + A LFLG + KS P+H
Sbjct: 182 LLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPLH 239
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ + GI+ +AR++ +F I+ + I + ITL
Sbjct: 240 VWLPDA-MEGPTPISALIHAAXMVAAGIFLLARLL-PLF---ISLPLIMSFISLVGTITL 294
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 295 FLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAY 343
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G ++H + ++N+ + GL K +P T FL G ++ G+PPL
Sbjct: 344 SKALLFLGSGSIIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPPL 403
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 404 ACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 448
>gb|AAG12233.1| (AF163467) NADH dehydrogenase subunit F [Uncinia phleoides]
Length = 702
Score = 182 bits (457), Expect = 9e-45
Identities = 138/467 (29%), Positives = 214/467 (45%), Gaps = 41/467 (8%)
Query: 4 LPFIII-IPLFGAFSMPIVSLLKGKAKEIWATIISF---ATLIVGIEVFREVWSGGTIVY 59
+PF+ + +P+ + ++ + IWA F T+I + + G I
Sbjct: 1 IPFLSLPVPISIGLGLLLIPTAIKNIRRIWAFPSIFFLIITMIFSLNFSIQQIHGSLIYQ 60
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
L S T DF + + +D +IM+ +IT V ++YS YM HD G +++ +
Sbjct: 61 YLWSWTI--NKDFSLEFGYLIDSLTSIMLTLITTVGITVLIYSDNYMSHDQGYLRFFAYL 118
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
+ MLG+ + ++ Y+F EI+ I SY L+ F A K +
Sbjct: 119 NLFNASMLGLVTSSNLIQIYIFWEIVGICSYLLIGFWFTRPLAANACQKAFVTNRVGXFG 178
Query: 180 VLLGIALLYGQYGTLTM-------GYLAVKMSENPTIVAKIALALFL--GGLLFKSGAAP 230
+LLGI Y G+ L K N L FL G + KS P
Sbjct: 179 LLLGILGFYWIIGSFEFRDLFEITNNLIQKNGVNSLFTTLCTLCTFLLFVGAIAKSAQFP 238
Query: 231 VHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACI 290
+H+WL DA P+ ISA++ + G++ +AR +F + + II I
Sbjct: 239 LHIWLPDA-MEGPTPISALIHAATMVAAGVFLVAR----LFPLLLITPNIMHIISSIGLI 293
Query: 291 TLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNH 350
TL +G +A+ Q D+KR LAYS++ Q+GYI+L LGIG + A++H + H
Sbjct: 294 TLFLGATLALAQIDIKRSLAYSTMSQLGYIILALGIG-----------SSRTALFHLITH 342
Query: 351 ALMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMP 401
A KALLFL +G ++H + +N+ + GL K +P T AFL+G ++ G+P
Sbjct: 343 AYSKALLFLGSGSIIHSMEPVVGYSPCKNQNMVLMGGLTKYIPITRTAFLLGTLSLCGIP 402
Query: 402 PLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYVRV-LFTFFG 447
PL F SK I +S L++P+ G I T RV L TF G
Sbjct: 403 PLACFWSKDEILSNSWLYSPIFGIITYFTTGLTAFYMFRVYLLTFDG 449
>gb|AAG26157.1| (AF123809) NADH dehydrogenase subunit F [Lactoris fernandeziana]
Length = 443
Score = 182 bits (457), Expect = 9e-45
Identities = 134/444 (30%), Positives = 223/444 (50%), Gaps = 44/444 (9%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWA----TIISFATLIVGIEVFREVWSGGTIVY 59
LP ++I L G +PI + + +WA ++S L V +++ +G +I
Sbjct: 20 LPVTMLIGL-GLLLVPITTK---NLRRMWAFSSVLLLSIVMLFSANLVIQQI-NGSSIYQ 74
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
L S T DF + + VD +IM+++IT V + ++YS YM HD G ++++ +
Sbjct: 75 YLWSWTI--NNDFSLEFGYFVDSLTSIMLILITTVGIMVLIYSDNYMSHDQGYLRFFSYM 132
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
MLG+ + ++ Y+F E++ + SY L+ F A K L
Sbjct: 133 SFFNASMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRLGDFG 192
Query: 180 VLLGIALLYGQYGTLTMGYLAVKMSEN-------PTIVAKIALALFLGGLLFKSGAAPVH 232
+LLGI LY G+ L ++S N ++ A + +L G + KS P+H
Sbjct: 193 LLLGILGLYWITGSFEFRDL-FEISNNLIHNNGVNSLFATVCASLLFLGAVAKSAQFPLH 251
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ + GI+ +AR +F +F + P + +I + IT+
Sbjct: 252 VWLPDA-MEGPTPISALIHAATMVAAGIFLVAR-LFPLF--TVIPYIMN-LISLIGIITV 306
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +A+ Q+D+KR LAYS++ Q+GYI+L GIG + A++H + HA
Sbjct: 307 FLGATLALAQKDIKRSLAYSTMSQLGYIMLAPGIG-----------SYRAALFHLITHAY 355
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G ++H + ++N+ + GL K +P T FL+G ++ G+PPL
Sbjct: 356 SKALLFLGSGSIIHSMEPIVGYSPEKSQNMVFMGGLTKYVPITKKTFLLGTLSLCGIPPL 415
Query: 404 NGFASKWLIYESSALFNPLLGAIA 427
F SK I S L++P+L IA
Sbjct: 416 ACFWSKDEILNDSWLYSPMLAIIA 439
>pir||D83315 NADH dehydrogenase I chain L PA2647 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948716|gb|AAG06035.1|AE004693_6 (AE004693) NADH
dehydrogenase I chain L [Pseudomonas aeruginosa]
Length = 615
Score = 182 bits (456), Expect = 1e-44
Identities = 146/496 (29%), Positives = 240/496 (47%), Gaps = 56/496 (11%)
Query: 1 MTWLPFIIIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREVWSGGTIVYA 60
M LP + PL G ++S +G+ E + ++ + VG+ W+ +++
Sbjct: 1 MNLLPLTFLFPLVGFL---LLSFSRGRWSENLSALVGVGS--VGLSALSAAWA----IFS 51
Query: 61 LGSETPFGKA------------DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKH 108
S P G A DF +D M+ ++T V FL L++ YM+
Sbjct: 52 FHSSPPEGGAYSLVLWQWMAAGDFSTNFTLYLDGLSVTMLGVVTGVGFLIHLFASWYMRG 111
Query: 109 DTGLEKYYTLILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIK 168
+TG +++ + ML + + ++ Y E + + SY L+ F + A +K
Sbjct: 112 ETGYSRFFAYTNLFIASMLFLVLGDNLLFLYFGWEGVGLCSYLLIGFYYSNRNNGNAALK 171
Query: 169 YMFVGSLASSFVLLGIALLYGQYGTLTMGYLAV----KMSENPTIVAKIALALFLGGLLF 224
V + F+ G+ +L+ Q+GTL + L V K E + LAL LGG +
Sbjct: 172 AFIVTRVGDVFMAFGLFILFQQFGTLNIQELLVLAPQKFPEGNLWLTLATLAL-LGGAVG 230
Query: 225 KSGAAPVHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWII 284
KS P+ WLADA A P+ +SA++ + G+Y IAR +F A + ++
Sbjct: 231 KSAQLPLQTWLADA-MAGPTPVSALIHAATMVTAGVYLIAR-CHGLFTLA---PDILELV 285
Query: 285 IIFACITLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAI 344
I +TL++ A+VQ D+KR+LAYS++ QIGY+ L LG+G A AI
Sbjct: 286 GIVGAVTLVLAGFAALVQTDIKRILAYSTMSQIGYMFLALGVG-----------AWDAAI 334
Query: 345 YHTVNHALMKALLFLVAGVVL----HELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGM 400
+H + HA KALLFL +G V+ HE +N+ ++ GL K +P +F++G AA+ +
Sbjct: 335 FHLMTHAFFKALLFLASGAVIVACHHE---QNIFKMGGLWKKLPLAYASFVVGGAALAAL 391
Query: 401 PPLN-GFASK-WLIYESSALFNPLLGAIAIIGTAFCTAAYV-RVLF-TFFGRPSEKVMKA 456
P L GF SK +++E+ A + L ++G AF T+ Y R++F F G P K
Sbjct: 392 PFLTAGFYSKDEILWEAFASGHRELLIAGLVG-AFLTSIYTFRLIFVAFHGEP--KTEAH 448
Query: 457 KDPGATMLLPIFILVI 472
G + LP+ +L++
Sbjct: 449 AGHGISHWLPLSVLIV 464
>emb|CAC17760.1| (AJ400890) NADH dehydrogenase subunit F [Grubbia tomentosa]
Length = 703
Score = 182 bits (456), Expect = 1e-44
Identities = 136/467 (29%), Positives = 226/467 (48%), Gaps = 44/467 (9%)
Query: 4 LPFIII-IPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVY 59
+PF+ + +P+ + + + K + +WA ++ +I I++ E + +I
Sbjct: 9 IPFVPLPVPMLIGVGLLLFPMAIKKLRRMWAFHSVLLLSIVMIFSIDLAIEQINSSSIYQ 68
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
+ S DF + + VD +IM ++IT V + ++YS YM HD G +++ +
Sbjct: 69 YVWSWII--NTDFSLELGCLVDPLTSIMSILITTVGIMVLIYSDNYMSHDQGYLRFFAYM 126
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
MLG+ + ++ Y+F E++ + SY L+ F A K
Sbjct: 127 SFFSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPVAAXACQKAFXTNRXGDFG 186
Query: 180 VLLGIALLYGQYGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHM 233
+LLGI LY G+ L + +E + A + AL G KS P+H
Sbjct: 187 LLLGILGLYWITGSFEFRDLFEIXNNLIHNNEXNPVFATVCAALLFXGAXAKSAQFPLHX 246
Query: 234 WLADAHPAAPSSISAMLSGLVIKIGGIYAIARVV--FSIFWPAINPATVGWIIIIFACIT 291
WL DA P+ ISA++ + GI+ +AR++ F + +N +I IT
Sbjct: 247 WLPDA-MEGPTPISALIHAATMVAAGIFLVARLLPXFIVIPYIMN------LISSIGXIT 299
Query: 292 LIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHA 351
+++G +A+ Q D+KR LAYS++ Q+GY++L LG+G + A++H + HA
Sbjct: 300 VLLGATLALAQRDIKRSLAYSTMSQLGYMMLALGMG-----------SYQTALFHLITHA 348
Query: 352 LMKALLFLVAGVVLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPP 402
KALLFL +G V+H + T +N+ + GL K +P T AF +G ++ G+PP
Sbjct: 349 YSKALLFLGSGSVIHSMETVVGYSPDKSQNMVLMGGLTKHVPITKTAFFLGTLSLCGIPP 408
Query: 403 LNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
L F SK I S L++P+ IA + TA TA Y+ R+ L TF G
Sbjct: 409 LACFWSKDEILNDSWLYSPIFAIIACL-TAGLTAFYMFRIYLLTFEG 454
>pir||T12624 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Aristida
longiseta chloroplast (fragment)
>gi|755825|gb|AAA64771.1| (U21966) NADH dehydrogenase F
[Aristida longiseta]
Length = 702
Score = 182 bits (456), Expect = 1e-44
Identities = 140/466 (30%), Positives = 227/466 (48%), Gaps = 46/466 (9%)
Query: 4 LPFIIIIPL-FGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVY 59
LP +I+ + FG F +P + + IWA ++ ++ + + + +G +I
Sbjct: 6 LPLPVIMSMGFGLFLIPTATK---NLRRIWAFPSVLLLSIAMVFSVHLSIQQINGSSIYQ 62
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 63 YLWSWTI--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYI 120
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 121 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 180
Query: 180 VLLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPV 231
+LLGI + G+L L K++ N + A LFLG + KS P+
Sbjct: 181 LLLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFFLFLGAVA-KSAQFPL 238
Query: 232 HMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACIT 291
H+WL DA P+ ISA++ ++ GI+ +AR++ +F I+ + I + IT
Sbjct: 239 HVWLPDA-MEGPTPISALIHATMV-AAGIFLLARLL-PLF---ISLPFIMSFISLVGTIT 292
Query: 292 LIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHA 351
L +G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 293 LFLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHA 341
Query: 352 LMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPP 402
KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+PP
Sbjct: 342 YSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIPP 401
Query: 403 LNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYVRV-LFTFFG 447
L F SK I +S L++P LG IA R+ L TF G
Sbjct: 402 LACFWSKDEIISNSWLYSPFLGIIASFSAGLTAFYMFRIYLLTFDG 447
>pir||T12220 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Globularia
cordifolia chloroplast (fragment)
>gi|2605757|gb|AAB84410.1| (AF027282) NADH dehydrogenase
[Globularia cordifolia]
Length = 733
Score = 182 bits (456), Expect = 1e-44
Identities = 135/467 (28%), Positives = 233/467 (48%), Gaps = 41/467 (8%)
Query: 3 WL-PFIII-IPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTI 57
W+ PF+ + +P+ + + + +WA ++ +I I + + + +I
Sbjct: 6 WIRPFVPLPVPMLXGVGLLLFPTATXNLRRMWAFPXILLLSIVMIFSINLSIQQINSNSI 65
Query: 58 VYALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYT 117
+ S T DF + + +D +IM ++IT V + ++YS YM HD G +++
Sbjct: 66 YQYVWSWTL--NNDFSLEFGYLIDPLTSIMSMLITTVGIMVLIYSDNYMDHDQGYLRFFA 123
Query: 118 LILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLAS 177
+ MLG+ + ++ Y+F E++ + SY L+ F A K +
Sbjct: 124 YMSFFSTSMLGLVTSSNLIQIYIFWELVGVCSYLLIGFWFTRPLAANACQKAFVTNRVGD 183
Query: 178 SFVLLGIALLYGQYGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPV 231
+LLGI +Y G+ L + +E A + AL G + KS P+
Sbjct: 184 FGLLLGILGVYWITGSFEFRDLFEIFNNLIYNNEVNFPFATLCAALLFAGAVAKSAQFPL 243
Query: 232 HMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACIT 291
H+WL DA P+ ISA++ + G++ +AR++ +F + P + +I +I IT
Sbjct: 244 HVWLPDA-MEGPTPISALIHAATMVAAGVFLVARLL-PLF--IVIPYIMNFISLI-GLIT 298
Query: 292 LIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHA 351
L++G +A+ Q+D+KR LAYS++ Q+GY++L LG+G + A++H + HA
Sbjct: 299 LLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMG-----------SYRSALFHLITHA 347
Query: 352 LMKALLFLVAGVVLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPP 402
KALLFL +G V+H + T +N+ + GL K +P T +FL+G ++ G+PP
Sbjct: 348 YSKALLFLGSGSVIHSMETIVGYSPDKSQNMVLMGGLTKHVPITKTSFLLGTLSLCGIPP 407
Query: 403 LNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
L F SK I + S L++P+ IA + TA TA Y+ R+ L TF G
Sbjct: 408 LACFWSKDEILKDSWLYSPIFAIIAWV-TAGLTAFYMFRIYLLTFEG 453
>gb|AAF25183.1|AF182355_1 (AF182355) NADH dehydrogenase [Neurolepis aperta]
Length = 702
Score = 182 bits (456), Expect = 1e-44
Identities = 138/465 (29%), Positives = 226/465 (47%), Gaps = 43/465 (9%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVYA 60
LP +I+ + F + ++ + IWA ++ ++ + + + +G +I
Sbjct: 6 LPLPVIMSM--GFGLILIPTATKNLRRIWAFPSVLLLSIAMVFSVHLSIQQINGSSIYQY 63
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 64 LWSWTV--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYIS 121
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
MLG+ + ++ Y F E++ + SY L+ F A K + +
Sbjct: 122 FFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGL 181
Query: 181 LLGIALLYGQYGTLTMGYL-------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHM 233
LLGI + G+L L N + A LFLG + KS P+H+
Sbjct: 182 LLGILGFFWITGSLEFRDLFKIANNWIPNNGMNSLLTTLCAFLLFLGAVA-KSAQFPLHV 240
Query: 234 WLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLI 293
WL DA P+ ISA++ + GI+ +AR++ +F I+ + I + ITL
Sbjct: 241 WLPDA-MEGPTPISALIHAAXMVAAGIFLLARLL-PLF---ISLPLIMSFISLVGTITLF 295
Query: 294 VGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALM 353
+G +A+ Q D+KR LAYS++ Q+GY++L LG+G + A++H + HA
Sbjct: 296 LGATLALAQRDIKRSLAYSTMSQLGYMMLALGVG-----------SYQAALFHLITHAYS 344
Query: 354 KALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLN 404
KALLFL +G ++H + ++N+ + GL K +P T FL G ++ G+PPL
Sbjct: 345 KALLFLGSGSIIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPPLA 404
Query: 405 GFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 405 CFWSKDEILSNSWLYSPYFGVIASF-TAGLTAFYMFRIYLLTFDG 448
>gb|AAF27219.1|AF111739_1 (AF111739) NADH dehydrogenase [Huberodendron patinoi]
Length = 689
Score = 182 bits (456), Expect = 1e-44
Identities = 131/467 (28%), Positives = 228/467 (48%), Gaps = 44/467 (9%)
Query: 4 LPFIII-IPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVY 59
+PF+ + IP+ + + + +WA ++ +I +++ + + +I
Sbjct: 11 IPFVPLPIPILIGMGLXLFPTATKNLRRMWAFPNILVLSIVMIFSVDLSIQQINRSSIYQ 70
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
+GS T DF + +D +IM ++IT V ++YS YM HD G +++ +
Sbjct: 71 YVGSWTI--NNDFSFEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHDQGYLRFFAYM 128
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
+ MLG+ + ++ Y+F E++ SY L+ F +A K +
Sbjct: 129 SLFNTSMLGLVTSSNLIQIYIFWELVGXCSYLLIGFWFTRPXAAKACQKAFVTNRIGDFC 188
Query: 180 VLLGIALLYGQYGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHM 233
+LLGI Y G+ L + +E + + +L G + KS P+H+
Sbjct: 189 LLLGILGFYWITGSFEFQDLFEIFNNLIYNNEVHFLFVTLCASLLFAGAVAKSAQFPLHV 248
Query: 234 WLADAHPAAPSSISAMLSGLVIKIGGIYAIARV--VFSIFWPAINPATVGWIIIIFACIT 291
WL DA P+ ISA++ + GI+ +AR+ +F + +N +I + IT
Sbjct: 249 WLPDA-MXGPTPISALIHXATMVAXGIFLVARLLPLFIVIPYIMN------LISLIGIIT 301
Query: 292 LIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHA 351
+++G +A+ Q+D+KR LAYS++ Q+GY++L LG+G + A++H + HA
Sbjct: 302 VLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMG-----------SYRAALFHLITHA 350
Query: 352 LMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPP 402
KALLFL +G ++H + ++N+ + GL K +P T AFL+G ++ G+PP
Sbjct: 351 YSKALLFLGSGSIIHSMEAIVGYSPDKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGIPP 410
Query: 403 LNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
L F SK I S L++P+ IA TA TA Y+ R+ L TF G
Sbjct: 411 LACFWSKDEILSDSWLYSPIFAIIA-XSTAGLTAFYMFRIYLLTFEG 456
>gb|AAF37198.1| (AF191809) NADH dehydrogenase subunit F [Carex donnell-smithii]
Length = 705
Score = 182 bits (456), Expect = 1e-44
Identities = 133/456 (29%), Positives = 212/456 (46%), Gaps = 40/456 (8%)
Query: 4 LPFIII-IPLFGAFSMPIVSLLKGKAKEIWATIISF---ATLIVGIEVFREVWSGGTIVY 59
+PF+ + +P+ + ++ + IWA F T+I + + +G I
Sbjct: 7 IPFLSLPVPISIGLGLLLIPTAIKNIRRIWAFPSIFFLIITMIFSLNFSIQQINGSLIYQ 66
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
L S T DF + + +D +IM+ +IT V ++YS YM HD +++ +
Sbjct: 67 YLWSWTI--NKDFSLEFGYLIDSLTSIMLTLITTVGITVLIYSDNYMSHDQAYLRFFAYL 124
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
+ MLG+ + ++ Y+F EI+ I SY L+ F A K +
Sbjct: 125 NLFNASMLGLVTSSNLIQIYIFWEIVGICSYLLIGFWFTRPLAANACQKAFVTNRVGDFG 184
Query: 180 VLLGIALLYGQYGTLTM-------GYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVH 232
+LLGI Y G+ L K N LF+G + KS P+H
Sbjct: 185 LLLGILAFYWIIGSFEFRDLFEITNNLIQKNGVNSLFTTLCTFLLFVGAIA-KSAQFPLH 243
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ + G++ +AR +F + + II + ITL
Sbjct: 244 IWLPDA-MEGPTPISALIHAATMVAAGVFLVAR----LFPLLLITPNIMHIISLIGLITL 298
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +A+ Q D+KR LAYS++ Q+GYI+L LGIG + A++H + HA
Sbjct: 299 FLGATLALAQLDIKRSLAYSTMSQLGYIILALGIG-----------SSRAALFHLITHAY 347
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G ++H + +N+ + GL K +P T AFL+G ++ G+PPL
Sbjct: 348 SKALLFLGSGSIIHSMEPVVGYSPYKNQNMVLMGGLTKYIPITRTAFLLGTLSLCGIPPL 407
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV 439
F SK I +S L+ P+ G I T TA Y+
Sbjct: 408 ACFWSKDEILSNSWLYCPIFGIITYFTTGL-TAFYM 442
>sp|P31971|NU5C_SYNP2 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5 >gi|538864|pir||A40588
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 -
Synechococcus sp. (PCC 7002) >gi|154516|gb|AAA27311.1|
(M99378) NADH dehydrogenase subunit 5 [Synechococcus
PCC7002]
Length = 664
Score = 181 bits (455), Expect = 2e-44
Identities = 151/529 (28%), Positives = 249/529 (46%), Gaps = 72/529 (13%)
Query: 3 WLPFIIIIPLFGAFSMPI--VSLLK--GKAKEIWATIISFATLIVGIEV---FREVWSGG 55
WL I ++PL GA + I +SL K K ++++A F ++G + F +WS
Sbjct: 9 WL--IPVLPLLGAMVIGIGLISLNKFTNKLRQLYAV---FVLSLIGTSMALSFGLLWSQI 63
Query: 56 TIVYALGSETPFGKA-DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEK 114
A + A DF +++ + VD A+M +I+T V+ L ++Y+ YM HD G +
Sbjct: 64 QGHEAFTYTLEWAAAGDFHLQMGYTVDHLSALMSVIVTTVALLVMIYTDGYMAHDPGYVR 123
Query: 115 YYTLILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGS 174
+Y + I MLG+ + ++ Y+F E++ + SY L+ F +D +A K
Sbjct: 124 FYAYLSIFSSSMLGLVFSPNLVQVYIFWELVGMCSYLLIGFWYDRKAAADACQKAFVTNR 183
Query: 175 LASSFVLLGIALLYGQYGTLTMGYLA------VKMSENPTIVAKIALALFLGGLLFKSGA 228
+ +LLG+ LY G+ + V + +++A + L G + KS
Sbjct: 184 VGDFGLLLGMLGLYWATGSFEFDLMGDRLMDLVSTGQISSLLAIVFAVLVFLGPVAKSAQ 243
Query: 229 APVHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIF- 287
P+H+WL DA P+ ISA++ + G++ +AR+ +P P +I +
Sbjct: 244 FPLHVWLPDA-MEGPTPISALIHAATMVAAGVFLVARM-----YPVFEPIPEAMNVIAWT 297
Query: 288 ACITLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHT 347
T +G +A+ Q D+K+ LAYS++ Q+GY+++ +GIG ++H
Sbjct: 298 GATTAFLGATIALTQNDIKKGLAYSTMSQLGYMVMAMGIG-----------GYTAGLFHL 346
Query: 348 VNHALMKALLFLVAGVVLHELG---------TRNLNELSGLAKTMPKTTFAFLIGAAAIV 398
+ HA KA+LFL +G V+H + +++ + GL K MP T FLIG AI
Sbjct: 347 MTHAYFKAMLFLGSGSVIHGMEEVVGHNAVLAQDMRLMGGLRKYMPITATTFLIGTLAIC 406
Query: 399 GMPPLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RVLF-TFFG-------RP 449
G+PP GF SK I + NP+L I TA TA Y+ R+ F TF G +
Sbjct: 407 GIPPFAGFWSKDEILGLAFEANPVLWFIG-WATAGMTAFYMFRMYFLTFEGEFRGTDQQL 465
Query: 450 SEKVM--------------KAKDPGATMLLPIFILVIAIIGMGLF--PW 482
EK++ K + TM P+ L + + +GL PW
Sbjct: 466 QEKLLTAAGQAPEEGHHGSKPHESPLTMTFPLMALAVPSVLIGLLGVPW 514
>pir||T13505 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Oryzopsis
racemosa chloroplast (fragment)
>gi|726138|gb|AAA64191.1| (U21924) NADH dehydrogenase F
[Oryzopsis racemosa]
Length = 702
Score = 181 bits (455), Expect = 2e-44
Identities = 140/465 (30%), Positives = 227/465 (48%), Gaps = 43/465 (9%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVYA 60
LP +I+ + F + ++ + IWA ++ ++ +++ + +G +I
Sbjct: 6 LPLPVIMSM--GFGLILIPTATKNLRRIWAFPSVLLLSIAMVFSVQLSIQQINGSSIYQY 63
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
L S T DF + + +D +IM+++IT V L ++YS YM HD G +++ I
Sbjct: 64 LWSWTI--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDGYMSHDEGYLRFFVYIS 121
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
MLG+ + ++ Y F E++ + SY L+ F A K + +
Sbjct: 122 FFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGL 181
Query: 181 LLGIALLYGQYGTLTMGYLAVKMSE-------NPTIVAKIALALFLGGLLFKSGAAPVHM 233
LLGI + G+L L + N + A LFLG + KS P+H+
Sbjct: 182 LLGILGFFWITGSLEFRDLFQIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPLHV 240
Query: 234 WLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLI 293
WL DA P+ ISA++ + GI+ +AR++ +F I+ + I + ITL
Sbjct: 241 WLPDA-MEGPTPISALIHAATMVAAGIFLLARLL-PLF---ISLPFIMSFISLVGTITLF 295
Query: 294 VGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALM 353
+G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 296 LGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAYS 344
Query: 354 KALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLN 404
KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+PPL
Sbjct: 345 KALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYIPITRTTFLWGTLSLCGIPPLA 404
Query: 405 GFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 405 CFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 448
>gb|AAA64770.1| (U21965) NADH dehydrogenase F [Streptogyna americana]
Length = 702
Score = 181 bits (455), Expect = 2e-44
Identities = 141/467 (30%), Positives = 226/467 (48%), Gaps = 47/467 (10%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVYA 60
LP +I+ + F + ++ + IWA + ++ + + + +G +I
Sbjct: 6 LPLPVIMSM--GFGLILIPTATKNLRRIWAFPSVLFLSIAMVFSVHLSIQQINGSSIYQY 63
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 64 LWSWTV--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYIS 121
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
MLG+ + ++ Y F E++ + SY L+ F A K + +
Sbjct: 122 FFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGL 181
Query: 181 LLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPVH 232
LLGI + G+L L K++ N + A LFLG + KS P+H
Sbjct: 182 LLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPLH 239
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVV-FSIFWPAINPATVGWIIIIFACIT 291
+WL DA P+ ISA++ + G++ +AR++ I P I I + IT
Sbjct: 240 VWLPDA-MEGPTPISALIHAATMVAAGVFLLARLLPLFICLPLIMS-----FISLVGTIT 293
Query: 292 LIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHA 351
L +G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 294 LFLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHA 342
Query: 352 LMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPP 402
KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+PP
Sbjct: 343 YSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPP 402
Query: 403 LNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
L F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 403 LACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 448
>pir||T13696 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - smut grass
chloroplast (fragment) >gi|755855|gb|AAA64701.1|
(U21983) NADH dehydrogenase F [Sporobolus indicus]
Length = 703
Score = 181 bits (455), Expect = 2e-44
Identities = 146/467 (31%), Positives = 231/467 (49%), Gaps = 48/467 (10%)
Query: 4 LPFIIIIPL-FGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVY 59
LP +I+ + FG F +P + + IWA + L+ + + + G +I
Sbjct: 6 LPLPVIMSMGFGLFLIPTATK---NLRRIWAFPSVLFLSIALVFSVHLSIQQIKGSSIYQ 62
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 63 YLWSWTI--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYI 120
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 121 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPLAASACQKAFVTNRVGDFG 180
Query: 180 VLLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPV 231
+LLGI + G+L L K++ N + A LFLG + KS P+
Sbjct: 181 LLLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPL 238
Query: 232 HMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACIT 291
H+WL DA P+ ISA++ ++ GI+ IAR++ +F P + +I ++ IT
Sbjct: 239 HVWLPDA-MEGPTPISALIHATMV-AAGIFLIARLL-PLFRSL--PFIMSFISLV-GTIT 292
Query: 292 LIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHA 351
L +G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 293 LFLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHA 341
Query: 352 LMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPP 402
KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+PP
Sbjct: 342 YSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLKKYVPITKTTFLCGTLSLCGIPP 401
Query: 403 LNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
L F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 402 LACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 447
>pir||T13282 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Lebronnecia
kokioides chloroplast (fragment)
>gi|1654268|gb|AAB17757.1| (U55325) Lebronnecia
kokioides NADH dehydrogenase
Length = 688
Score = 181 bits (455), Expect = 2e-44
Identities = 130/462 (28%), Positives = 224/462 (48%), Gaps = 43/462 (9%)
Query: 8 IIIPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVYALGSE 64
+ IP+F + + + +WA ++ +I + + + +G +I + S
Sbjct: 4 LXIPIFIGXXLLLFPTATKNLRRMWAFPNILLLSIVMIFSVNLSIQQINGSSIYQYVWSW 63
Query: 65 TPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILEL 124
T DF + +D +IM ++IT V ++YS YM HD G +++ + +
Sbjct: 64 TI--NNDFSFEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHDQGYLRFFAYMSLFNT 121
Query: 125 GMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGI 184
MLG+ + ++ Y+F E++ + SY L+ F A K + +LLGI
Sbjct: 122 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLLGI 181
Query: 185 ALLYGQYGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADA 238
Y G+ L + +E + + +L G + KS P+H+WL DA
Sbjct: 182 LGFYWITGSFEFQDLFEIFNNLIYNNEVHFLFVTLCASLLFAGAVAKSAQFPLHVWLPDA 241
Query: 239 HPAAPSSISAMLSGLVIKIGGIYAIARV--VFSIFWPAINPATVGWIIIIFACITLIVGN 296
P+ ISA++ + GI+ +AR+ +F + +N +I + IT+++G
Sbjct: 242 -MEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMN------LISLIGIITVLLGA 294
Query: 297 AMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKAL 356
+A+ Q+D+KR LAYS++ Q+GY++L LG+G + A++H + HA KAL
Sbjct: 295 TLALAQKDIKRGLAYSTMSQLGYMMLALGMG-----------SYRAALFHLITHAYSKAL 343
Query: 357 LFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFA 407
LFL +G ++H + ++N+ + GL K +P T AFL+G ++ G+PPL F
Sbjct: 344 LFLASGSIIHSMEAIVGYSPEKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGIPPLACFW 403
Query: 408 SKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
SK I S L++P+ IA TA TA Y+ R+ L TF G
Sbjct: 404 SKDEILSDSWLYSPIFAIIA-WSTAGLTAFYMFRIYLLTFEG 444
>gb|AAD26234.1| (AF117417) NADH dehydrogenase [Miscanthus japonicus]
Length = 702
Score = 181 bits (455), Expect = 2e-44
Identities = 146/468 (31%), Positives = 232/468 (49%), Gaps = 49/468 (10%)
Query: 4 LPFIIIIPL-FGAFSMPIVSLLKGKAKEIWA----TIISFATLIVGIEVFREVWSGGTIV 58
LP +I+ + FG F +P + + IWA ++S A ++ + + + +G +I
Sbjct: 6 LPLPVIMSMGFGLFLIPTATK---NLRRIWAFPSILLLSIA-MVFSLHLSIQQINGSSIY 61
Query: 59 YALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTL 118
L S T DF + + VD +IM+++IT V L ++YS +YM HD G +++
Sbjct: 62 QYLWSWTI--NNDFSLEFGYLVDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVY 119
Query: 119 ILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASS 178
I MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 120 ISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDF 179
Query: 179 FVLLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAP 230
+LLGI + G+L L K++ N + A LFLG + KS P
Sbjct: 180 GLLLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFP 237
Query: 231 VHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACI 290
+H+WL DA P+ ISA++ + GI+ +AR++ +F I+ + I + I
Sbjct: 238 LHVWLPDA-MEGPTPISALIHAATMVAAGIFLLARLL-PLF---ISLPLIMSFISLVGTI 292
Query: 291 TLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNH 350
TL +G +A+ Q D+KR LAYS++ Q+G ++L LGIG + A++H + H
Sbjct: 293 TLFLGATLALAQRDIKRSLAYSTMSQLGXMMLALGIG-----------SYQAALFHLITH 341
Query: 351 ALMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMP 401
A KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+P
Sbjct: 342 AYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIP 401
Query: 402 PLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
PL F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 402 PLACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 448
>gb|AAF27233.1|AF111754_1 (AF111754) NADH dehydrogenase [Hildegardia barteri]
Length = 691
Score = 181 bits (455), Expect = 2e-44
Identities = 132/467 (28%), Positives = 229/467 (48%), Gaps = 44/467 (9%)
Query: 4 LPFIII-IPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVY 59
+PF+ + IP+ + + + +WA ++ +I +++ + + G+I
Sbjct: 11 IPFVPLPIPILIGMGLLLFPTATKNLRRMWAFPNILLLSIVMIFSVDLSIQQINRGSIYQ 70
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
+ S T DF + + +D +IM ++IT V L ++YS YM HD G +++ +
Sbjct: 71 YVWSWTI--NNDFSFELGYLIDSLTSIMSILITTVGILVLIYSDNYMSHDQGYLRFFAYM 128
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
+ MLG+ + ++ Y+F E++ + SY L+ F A K +
Sbjct: 129 SLFNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPAATNACQKAFVTNRIGDFG 188
Query: 180 VLLGIALLYGQYGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHM 233
+LLGI Y G+ L + +E + + +L G + KS P+H
Sbjct: 189 LLLGILGFYWITGSFEFQDLFEIFNNLIYNNEVHFLFVTLCASLLFAGAVAKSAQFPLHA 248
Query: 234 WLADAHPAAPSSISAMLSGLVIKIGGIYAIARV--VFSIFWPAINPATVGWIIIIFACIT 291
WL DA P+ ISA++ + GI+ +AR+ +F + +N +I + IT
Sbjct: 249 WLPDA-MEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMN------LISLIGIIT 301
Query: 292 LIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHA 351
+++G +A+ Q+D+KR LAYS++ Q+GY++L LG+G + A++H + HA
Sbjct: 302 VLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMG-----------SYRAALFHLITHA 350
Query: 352 LMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPP 402
KALLFL +G ++H + ++N+ + GL K +P T AFL+G ++ G+PP
Sbjct: 351 YSKALLFLGSGSIIHSMEAIVGYSPDKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGIPP 410
Query: 403 LNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
L F SK I S L++P+ IA TA TA Y+ R+ L TF G
Sbjct: 411 LACFWSKDEILSDSWLYSPIFAIIA-WSTAGLTAFYMFRIYLLTFDG 456
>pir||H82822 NADH-ubiquinone oxidoreductase, NQO14 subunit XF0318 [imported] -
Xylella fastidiosa (strain 9a5c)
>gi|9105141|gb|AAF83129.1|AE003884_14 (AE003884)
NADH-ubiquinone oxidoreductase, NQO14 subunit [Xylella
fastidiosa]
Length = 485
Score = 181 bits (455), Expect = 2e-44
Identities = 137/487 (28%), Positives = 247/487 (50%), Gaps = 54/487 (11%)
Query: 9 IIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREVWSGGTIVYALGSETPFG 68
++ L F++ ++ L G+A+++W +S A L V + + +V +G +
Sbjct: 20 MVLLGSTFALLMIDLFIGQARKVWTHFLSVAILGVVLSM---------LVAGVGGQGAAF 70
Query: 69 KADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLE-KYYTLILILELGML 127
F +R D +M ++I VS L+++Y Y++ + + L+L LGM+
Sbjct: 71 HGMF-VR-----DSAADVMKVVIVLVSALSLVYGWSYLRERNLFQGEIPVLVLFATLGMM 124
Query: 128 GIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALL 187
+ G + Y+ LE++++ SYALVA D+ EA +KY+ +GSLAS +L G++L+
Sbjct: 125 VLVSAGHLLMVYLGLELLALCSYALVAVNRDSKISTEAAMKYIVLGSLASGLLLYGMSLI 184
Query: 188 YGQYGTLTMGYLA--VKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPSS 245
YG GTL++ ++ + S T++ + G+ FK GAAP HMWL D + AP+
Sbjct: 185 YGATGTLSLPGISDMIHGSSEKTLLL-TGTVFLIAGVAFKLGAAPFHMWLPDVYQGAPTP 243
Query: 246 ISAMLSGL--VIKIGGIYAIARVVFSIFWPAINPATVGWIIII--FACITLIVGNAMAVV 301
I +S + G Y + V + P + W +I A +L++GN MA+V
Sbjct: 244 IVLFISSAPKLAAFGMAYRLLEV-------GVGPLSPQWHLIFGGLAAFSLVIGNLMAIV 296
Query: 302 QEDMKRLLAYSSVGQIGYILLGL-GIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLV 360
Q ++KR+LAYS+V +G++++G+ G GI Y S A+++ +++A+M F
Sbjct: 297 QTNLKRMLAYSTVSHVGFLMMGVSGGGIHGYSS---------AMFYVLSYAIMSTASF-G 346
Query: 361 AGVVLHELGT--RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLI----YE 414
A + L G+ N+++ GL+ P L A++ G+PP GF +K + +
Sbjct: 347 AIIALSRRGSEAENIDDFKGLSTRHPWMAALLLCVMASLAGLPPFLGFWTKLAVLGAAVQ 406
Query: 415 SSALFNPLLGAI-AIIGTAFCTAAYVRVL-FTFFGRPSEKVMKAKDPGATMLLPIFILVI 472
L+ +LG I A+IG + Y+RV+ +F P + + D ++ + I V
Sbjct: 407 GGMLWLAILGVICAVIGAYY----YLRVIKVMYFDEPVGEPLPVNDDRVLGVI-LSINVF 461
Query: 473 AIIGMGL 479
A++ +G+
Sbjct: 462 ALLALGI 468
>gb|AAA64202.1| (U21998) NADH dehydrogenase F [Arundo donax]
Length = 703
Score = 181 bits (454), Expect = 2e-44
Identities = 138/457 (30%), Positives = 224/457 (48%), Gaps = 45/457 (9%)
Query: 4 LPFIIIIPL-FGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVY 59
LP +I+ + G F +P + + IWA ++ ++ + + + +G +I
Sbjct: 6 LPLPVIMSMGLGLFLIPTATK---NLRRIWAFPSVLLLSIAMVFSVHLSIQQINGSSIYQ 62
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 63 YLWSWTI--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYI 120
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 121 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 180
Query: 180 VLLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPV 231
+LLGI + G+L L K++ N + A LFLG + KS P+
Sbjct: 181 LLLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPL 238
Query: 232 HMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACIT 291
H+WL DA P+ ISA++ + GI+ +AR++ +F I+ + I + IT
Sbjct: 239 HVWLPDA-MEGPTPISALIHAATMVAAGIFLLARLL-PLF---ISLPLIMSFISLVGTIT 293
Query: 292 LIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHA 351
L +G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 294 LFLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHA 342
Query: 352 LMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPP 402
KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+PP
Sbjct: 343 YSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPP 402
Query: 403 LNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV 439
L F SK I +S L++P G IA TA TA Y+
Sbjct: 403 LACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYM 438
>pir||T13249 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Gossypium
robinsonii chloroplast (fragment)
>gi|1654254|gb|AAB17750.1| (U55334) Gossypium robinsonii
NADH dehydrogenase
Length = 688
Score = 181 bits (454), Expect = 2e-44
Identities = 130/462 (28%), Positives = 225/462 (48%), Gaps = 43/462 (9%)
Query: 8 IIIPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVYALGSE 64
+ IP+ + + + +WA ++ +I +++ + +G +I + S
Sbjct: 4 LXIPILIGXXLLLFPTATKNLRRMWAFPNILLLSIVMIFSLDLSIQQINGSSIYQYVWSW 63
Query: 65 TPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILEL 124
T DF + +D +IM ++IT V ++YS YM HD G +++ + +
Sbjct: 64 TI--NNDFSFEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHDEGYLRFFAYMSLFNT 121
Query: 125 GMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGI 184
MLG+ + ++ Y+F E++ + SY L+ F A K + +LLGI
Sbjct: 122 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLLGI 181
Query: 185 ALLYGQYGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADA 238
Y G+L L + +E + + +L G + KS P+H+WL DA
Sbjct: 182 LGFYWITGSLEFQDLFEIFNNLIYNNEVHFLFVTLCASLLFAGAVAKSAQFPLHVWLPDA 241
Query: 239 HPAAPSSISAMLSGLVIKIGGIYAIARV--VFSIFWPAINPATVGWIIIIFACITLIVGN 296
P+ ISA++ + GI+ +AR+ +F + +N +I + IT+++G
Sbjct: 242 -MEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMN------LISLIGIITVLLGA 294
Query: 297 AMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKAL 356
+A+ Q+D+KR LAYS++ Q+GY++L LG+G + A++H + HA KAL
Sbjct: 295 TLALAQKDIKRGLAYSTMSQLGYMMLALGMG-----------SYRAALFHLITHAYSKAL 343
Query: 357 LFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFA 407
LFL +G ++H + ++N+ + GL K +P T AFL+G ++ G+PPL F
Sbjct: 344 LFLASGSIIHSMEAIVGYSPEKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGIPPLACFW 403
Query: 408 SKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
SK I S L++P+ IA TA TA Y+ R+ L TF G
Sbjct: 404 SKDEILSDSWLYSPIFAIIA-WSTAGLTAFYMFRIYLLTFEG 444
>pir||T12665 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Ceanothus
cuneatus chloroplast (fragment)
>gi|1773311|gb|AAB41639.1| (U78900) NADH dehydrogenase
[Ceanothus cuneatus]
Length = 707
Score = 181 bits (454), Expect = 2e-44
Identities = 133/467 (28%), Positives = 226/467 (47%), Gaps = 44/467 (9%)
Query: 4 LPFIII-IPLFGAFSMPIVSLLKGKAKEIW---ATIISFATLIVGIEVFREVWSGGTIVY 59
+PFI + IP+ + + + +W + ++ ++ +F + + +I
Sbjct: 3 IPFIPLPIPMLIGVGLLLFPTAIKNLRRMWVFPSVLLLSIVMVFSAHIFIQQINNSSIYL 62
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
++ S T DF + + +D ++M+++IT V + ++YS YM HD G +++ +
Sbjct: 63 SVWSWTI--NNDFSLEFGYLIDPLTSLMLILITTVGIMVLIYSDNYMSHDQGYLRFFAYM 120
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 121 SFSNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFG 180
Query: 180 VLLGIALLYGQYGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHM 233
+LLGI Y G+L L V +E + + L G + KS P+H+
Sbjct: 181 LLLGILGFYWITGSLEFRDLFEIFNNVVDNNEVDFLFVTLCACLLFAGAVAKSAQFPLHV 240
Query: 234 WLADAHPAAPSSISAMLSGLVIKIGGIYAIARV--VFSIFWPAINPATVGWIIIIFACIT 291
WL DA P+ ISA++ + GI+ +AR+ +F + +N +I IT
Sbjct: 241 WLPDA-MEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPFIMN------LIAFLGIIT 293
Query: 292 LIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHA 351
L +G +A+ Q+D+KR LAYS++ Q+GY++L LG+G + A++H + HA
Sbjct: 294 LFLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMG-----------SYRAALFHLITHA 342
Query: 352 LMKALLFLVAGVVLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPP 402
KALLFL +G ++H + T +N+ + GL K +P T AFL+G ++ G+PP
Sbjct: 343 YSKALLFLGSGSIIHSMETIVGYSPDKSQNMVLMGGLRKHVPITKTAFLLGTLSLCGIPP 402
Query: 403 LNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
L F SK I S L++P+ IA TA TA Y+ R+ L TF G
Sbjct: 403 LACFWSKDAILSDSWLYSPIFAIIA-FSTAGLTAFYMFRIYLLTFEG 448
>pir||T12751 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Ceanothus
prostratus chloroplast (fragment)
>gi|1773313|gb|AAB41640.1| (U78901) NADH dehydrogenase
[Ceanothus prostratus]
Length = 707
Score = 181 bits (454), Expect = 2e-44
Identities = 133/467 (28%), Positives = 226/467 (47%), Gaps = 44/467 (9%)
Query: 4 LPFIII-IPLFGAFSMPIVSLLKGKAKEIW---ATIISFATLIVGIEVFREVWSGGTIVY 59
+PFI + IP+ + + + +W + ++ ++ +F + + +I
Sbjct: 3 IPFIPLPIPMLIGVGLLLFPTAIKNLRRMWVFPSVLLLSIVMVFSAHIFIQQINNSSIYL 62
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
++ S T DF + + +D ++M+++IT V + ++YS YM HD G +++ +
Sbjct: 63 SVWSWTI--NNDFSLEFGYLIDPLTSLMLILITTVGIMVLIYSDNYMSHDQGYLRFFAYM 120
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 121 SFSNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFG 180
Query: 180 VLLGIALLYGQYGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHM 233
+LLGI Y G+L L V +E + + L G + KS P+H+
Sbjct: 181 LLLGILGFYWITGSLEFRDLFEIFNNVVDNNEVDFLFVTLCACLLFAGAVAKSAQFPLHV 240
Query: 234 WLADAHPAAPSSISAMLSGLVIKIGGIYAIARV--VFSIFWPAINPATVGWIIIIFACIT 291
WL DA P+ ISA++ + GI+ +AR+ +F + +N +I IT
Sbjct: 241 WLPDA-MEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPFIMN------LIAFLGIIT 293
Query: 292 LIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHA 351
L +G +A+ Q+D+KR LAYS++ Q+GY++L LG+G + A++H + HA
Sbjct: 294 LFLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMG-----------SYRAALFHLITHA 342
Query: 352 LMKALLFLVAGVVLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPP 402
KALLFL +G ++H + T +N+ + GL K +P T AFL+G ++ G+PP
Sbjct: 343 YSKALLFLGSGSIIHSMETIVGYSPDKSQNMVLMGGLRKHVPITKTAFLLGTLSLCGIPP 402
Query: 403 LNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
L F SK I S L++P+ IA TA TA Y+ R+ L TF G
Sbjct: 403 LACFWSKDAILSDSWLYSPIFAIIA-FSTAGLTAFYMFRIYLLTFEG 448
>pir||T12752 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Ceanothus
pumilus chloroplast (fragment)
>gi|1773315|gb|AAB41641.1| (U78902) NADH dehydrogenase
[Ceanothus pumilus]
Length = 707
Score = 181 bits (454), Expect = 2e-44
Identities = 133/467 (28%), Positives = 226/467 (47%), Gaps = 44/467 (9%)
Query: 4 LPFIII-IPLFGAFSMPIVSLLKGKAKEIW---ATIISFATLIVGIEVFREVWSGGTIVY 59
+PFI + IP+ + + + +W + ++ ++ +F + + +I
Sbjct: 3 IPFIPLPIPMLIGVGLLLFPTAIKNLRRMWVFPSVLLLSIVMVFSAHIFIQQINNSSIYL 62
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
++ S T DF + + +D ++M+++IT V + ++YS YM HD G +++ +
Sbjct: 63 SVWSWTI--NNDFSLEFGYLIDPLTSLMLILITTVGIMVLIYSDNYMSHDQGYLRFFAYM 120
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 121 SFSNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFG 180
Query: 180 VLLGIALLYGQYGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHM 233
+LLGI Y G+L L V +E + + L G + KS P+H+
Sbjct: 181 LLLGILGFYWITGSLEFRDLFEIFNNVVDNNEVDFLFVTLCACLLFAGAVAKSAQFPLHV 240
Query: 234 WLADAHPAAPSSISAMLSGLVIKIGGIYAIARV--VFSIFWPAINPATVGWIIIIFACIT 291
WL DA P+ ISA++ + GI+ +AR+ +F + +N +I IT
Sbjct: 241 WLPDA-MEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPFIMN------LIAFLGIIT 293
Query: 292 LIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHA 351
L +G +A+ Q+D+KR LAYS++ Q+GY++L LG+G + A++H + HA
Sbjct: 294 LFLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMG-----------SYRAALFHLITHA 342
Query: 352 LMKALLFLVAGVVLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPP 402
KALLFL +G ++H + T +N+ + GL K +P T AFL+G ++ G+PP
Sbjct: 343 YSKALLFLGSGSIIHSMETIVGYSPDKSQNMVLMGGLRKHVPITKTAFLLGTLSLCGIPP 402
Query: 403 LNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
L F SK I S L++P+ IA TA TA Y+ R+ L TF G
Sbjct: 403 LACFWSKDAILSDSWLYSPIFAIIA-FSTAGLTAFYMFRIYLLTFEG 448
>gb|AAF25175.1|AF182347_1 (AF182347) NADH dehydrogenase [Alvimia gracilis]
Length = 701
Score = 181 bits (454), Expect = 2e-44
Identities = 140/466 (30%), Positives = 229/466 (49%), Gaps = 45/466 (9%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVYA 60
LP +I+ + F + ++ + IWA ++ ++ + + + +G +I
Sbjct: 6 LPLPVIMSM--GFGLILIPTATKNLRRIWAFPSVLLLSIAMVFSVHLSVQQINGSSIYQY 63
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 64 LWSWTI--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYIS 121
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
MLG+ + ++ Y F E++ + SY L+ F A K + +
Sbjct: 122 FFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGL 181
Query: 181 LLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPVH 232
LLGI + G+L L K++ N + A LFLG + KS P+H
Sbjct: 182 LLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPLH 239
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ + GI+ +AR++ +F I+ + I + ITL
Sbjct: 240 VWLPDA-MEGPTPISALIHETXMVAAGIFLLARLL-PLF---ISLPLIMSFISLVGTITL 294
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 295 FLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAY 343
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G ++H + ++N+ + GL K +P T FL G ++ G+PPL
Sbjct: 344 SKALLFLGSGSIIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRSTFLWGTLSLCGIPPL 403
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 404 ACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 448
>gb|AAF27211.1|AF111731_1 (AF111731) NADH dehydrogenase [Ceiba rosea]
Length = 702
Score = 181 bits (454), Expect = 2e-44
Identities = 120/440 (27%), Positives = 216/440 (48%), Gaps = 41/440 (9%)
Query: 4 LPFIII-IPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVY 59
+PF+ + IP+ + + + + +WA ++ +I +++ + +G +I
Sbjct: 11 IPFVPLPIPILIGMGLLLFPMATKNLRRMWAFPNILLLSIVMIFSVDLSIQQINGSSIYQ 70
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
+ S T DF + +D +IM ++IT V ++YS YM HD G +++ +
Sbjct: 71 YVWSWTI--NNDFSFEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHDQGYLRFFAYM 128
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
+ MLG+ + ++ Y+F E++ + SY L+ F A K +
Sbjct: 129 SLFNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFG 188
Query: 180 VLLGIALLYGQYGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHM 233
+LLGI Y G+ L + +E P + + +L G + KS P+H+
Sbjct: 189 LLLGILGFYWITGSFEFQDLFEIFNNLIYSNEVPFLFVTLCASLLFAGAVAKSAQFPLHV 248
Query: 234 WLADAHPAAPSSISAMLSGLVIKIGGIYAIARV--VFSIFWPAINPATVGWIIIIFACIT 291
WL DA P+ ISA++ + GI+ +AR+ +F + +N +I + IT
Sbjct: 249 WLPDA-MEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPSIMN------LISLIGIIT 301
Query: 292 LIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHA 351
+++G +A+ Q+D+KR LAYS++ Q+GY++L LG+G + A++H + HA
Sbjct: 302 VLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMG-----------SYRAALFHLITHA 350
Query: 352 LMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPP 402
KALLFL +G ++H + ++N+ + GL K +P T AFL+G ++ G+PP
Sbjct: 351 YSKALLFLGSGSIIHSMEAIVGYSPDKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGIPP 410
Query: 403 LNGFASKWLIYESSALFNPL 422
L F SK I S L++P+
Sbjct: 411 LACFWSKDEILSDSWLYSPI 430
>gb|AAF44115.1| (AF230256) NADH dehydrogenase [Triplochiton zambesiacus]
Length = 700
Score = 181 bits (454), Expect = 2e-44
Identities = 132/465 (28%), Positives = 227/465 (48%), Gaps = 40/465 (8%)
Query: 4 LPFIII-IPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVY 59
+PF+ + IP+ + + + IWA ++ +I +++ + + +I
Sbjct: 11 IPFVPLPIPILIGIGLLLFPTATKNLRRIWAFPNILLLSIVMIFSVDLSIQQINRSSIYQ 70
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
+ S T DF + +D +IM ++IT V ++YS YM HD G +++ +
Sbjct: 71 YVWSWTI--NNDFSFEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHDQGYLRFFAYM 128
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
+ MLG+ + ++ Y+F E++ + SY L+ F A K +
Sbjct: 129 SLFNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFG 188
Query: 180 VLLGIALLYGQYGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHM 233
+LLGI Y G+ L + +E P + + +L G + KS P+H+
Sbjct: 189 LLLGILGFYWITGSFEFQDLFEIFNNLIYNNEVPFLFVTLCASLLFAGAVAKSAQFPLHV 248
Query: 234 WLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLI 293
WL DA P+ ISA++ + GI+ +AR++ +F I + +I + IT++
Sbjct: 249 WLPDA-MEGPTPISALIHAATMVAAGIFLVARLL-PLF---IGIPYIMNLISLIGIITVL 303
Query: 294 VGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALM 353
G +A+ Q+D+KR LAYS++ Q+GY++L LG+G + A++H + HA
Sbjct: 304 FGATLALAQKDIKRGLAYSTMSQLGYMMLALGMG-----------SYRAALFHLITHAYS 352
Query: 354 KALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLN 404
KALLFL +G ++H + ++N+ + GL K +P T AFL+G ++ G+PPL
Sbjct: 353 KALLFLGSGSIIHSMEAIVGYSPDKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGIPPLA 412
Query: 405 GFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I S L++P+ IA TA TA Y+ R+ L TF G
Sbjct: 413 CFWSKDEILSDSWLYSPIFAIIA-WSTAGLTAFYMFRIYLLTFEG 456
>gb|AAG12218.1| (AF163452) NADH dehydrogenase subunit F [Carex parva]
Length = 662
Score = 181 bits (454), Expect = 2e-44
Identities = 135/459 (29%), Positives = 213/459 (45%), Gaps = 41/459 (8%)
Query: 10 IPLFGAFSMPIVSLLKGKAKEIWATIISFA---TLIVGIEVFREVWSGGTIVYALGSETP 66
+P+ + ++ ++ IWA F T+I + + +G I L S T
Sbjct: 3 VPISIGLGLLLIPTAIKNSRRIWAFPSIFXLIITMIFSLNFSIQQINGSLIYQYLWSWTI 62
Query: 67 FGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGM 126
DF + + +D +IM+ +IT V ++YS YM HD +++ + + M
Sbjct: 63 --NKDFSLEFGYLIDSLTSIMLTLITTVGITVLIYSDNYMSHDQAYLRFFAYLNLFNASM 120
Query: 127 LGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIAL 186
LG+ + ++ Y+F EI+ I SY L+ F A K + +LLGI
Sbjct: 121 LGLVTSSNLIQIYIFWEIVGICSYLLIGFWFTRPLAANACQKAFVTNRVGDFGLLLGILG 180
Query: 187 LYGQYGTLTM-------GYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAH 239
Y G+ L K N LF+G + KS P+H+WL DA
Sbjct: 181 FYWIIGSFEFRDLFEITNNLIQKNGINSLFTTLCTFLLFVGAIA-KSAQFPLHIWLPDA- 238
Query: 240 PAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMA 299
P+ ISA++ + G++ +AR +F + + II ITL +G +A
Sbjct: 239 MEGPTPISALIHAATMVAAGVFLVAR----LFPLLLITPNIMHIISSIGLITLFLGATLA 294
Query: 300 VVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFL 359
+ Q+D+KR LAYS++ Q+GYI+L LGIG + A++H + HA KALLFL
Sbjct: 295 LAQKDIKRSLAYSTMSQLGYIILALGIG-----------SSRTALFHLITHAYSKALLFL 343
Query: 360 VAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKW 410
+G ++H + +N+ + GL K +P T AFL+G ++ G+PPL F SK
Sbjct: 344 GSGSIIHSMEPVVGYSPCKNQNMVLMGGLTKYIPITRTAFLLGTLSLCGIPPLACFWSKD 403
Query: 411 LIYESSALFNPLLGAIAIIGTAFCTAAYV--RVLFTFFG 447
I +S L++P+ G I T TA Y+ L TF G
Sbjct: 404 EILSNSWLYSPIFGTITYFTTGL-TAFYMFXVYLLTFDG 441
>gb|AAA64206.1| (U22002) NADH dehydrogenase F [Guadua paniculata]
Length = 702
Score = 180 bits (453), Expect = 3e-44
Identities = 140/465 (30%), Positives = 227/465 (48%), Gaps = 44/465 (9%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVYA 60
LP +I+ + F + ++ + IWA ++ ++ + + + +G +I
Sbjct: 7 LPLPVIMSM--GFGLILIPTATKNLRRIWAFPSVLLLSIAMVFSVHLSIQQINGSSIYQY 64
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 65 LWSWTV--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYIS 122
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
MLG+ + ++ Y F E++ + SY L+ F A K + +
Sbjct: 123 FFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGL 182
Query: 181 LLGIALLYGQYGTLTMGYL-------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHM 233
LLGI + G+L L N + A LFLG + KS P+H+
Sbjct: 183 LLGILGFFWITGSLEFRDLFKIANNWIPNSGINSLLTTLCAFLLFLGAVA-KSAQFPLHV 241
Query: 234 WLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLI 293
WL DA P+ ISA++ + + GI+ +AR++ +F I+ + I + ITL
Sbjct: 242 WLPDA-MEGPTPISALIHAATM-VAGIFLLARLL-PLF---ISLPLIMSFISLVGTITLF 295
Query: 294 VGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALM 353
+G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 296 LGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAYS 344
Query: 354 KALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLN 404
KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+PPL
Sbjct: 345 KALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRSTFLWGTLSLCGIPPLA 404
Query: 405 GFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 405 CFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 448
>pir||T13234 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Gossypium
anomalum chloroplast (fragment)
>gi|1654242|gb|AAB17744.1| (U55332) Gossypium anomalum
NADH dehydrogenase
Length = 686
Score = 180 bits (453), Expect = 3e-44
Identities = 132/462 (28%), Positives = 226/462 (48%), Gaps = 43/462 (9%)
Query: 8 IIIPLFGAFSMPIVSLLKGKAKEIWA--TIISFA-TLIVGIEVFREVWSGGTIVYALGSE 64
+ IP+ + + + IWA TI+ + +I +++ + +G +I + S
Sbjct: 4 LXIPILIGXXLLLFPTATKNLRRIWAFPTILLLSIVMIFSLDLSIQQINGSSIYQYVWSW 63
Query: 65 TPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILEL 124
T DF + +D +IM ++IT V ++YS YM HD G +++ + +
Sbjct: 64 TI--NNDFSFEFGYFIDSLTSIMSILITTVGIFVLIYSDNYMSHDEGYLRFFAYMSLFNT 121
Query: 125 GMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGI 184
MLG+ + ++ Y+F E++ + SY L+ F A K + +LLGI
Sbjct: 122 SMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFGLLLGI 181
Query: 185 ALLYGQYGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADA 238
Y G+ L + +E + + +L G + KS P+H+WL DA
Sbjct: 182 LGFYWITGSFEFQDLFEIFNNLIYNNEVHFLFLTLCASLLFAGAVAKSAQFPLHVWLPDA 241
Query: 239 HPAAPSSISAMLSGLVIKIGGIYAIARV--VFSIFWPAINPATVGWIIIIFACITLIVGN 296
P+ ISA++ + GI+ +AR+ +F + +N +I + IT+++G
Sbjct: 242 -MEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMN------LISLIGIITVLLGA 294
Query: 297 AMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKAL 356
+A+ Q+D+KR LAYS++ Q+GY++L LG+G + A++H + HA KAL
Sbjct: 295 TLALAQKDIKRGLAYSTMSQLGYMMLALGMG-----------SYRAALFHLITHAYSKAL 343
Query: 357 LFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFA 407
LFL +G ++H + ++N+ + GL K +P T AFL+G ++ G+PPL F
Sbjct: 344 LFLASGSIIHSMEAIVGYSPEKSQNMVFMGGLRKHVPITQIAFLVGTLSLCGIPPLACFW 403
Query: 408 SKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
SK I S L++P+ IA TA TA Y+ R+ L TF G
Sbjct: 404 SKDEILSDSWLYSPIFAIIA-WSTAGLTAFYMFRIYLLTFEG 444
>gb|AAD52742.1|AF123684_1 (AF123684) NADH dehydrogenase [Jovellana sp. DePamphilis 90-3]
Length = 700
Score = 180 bits (453), Expect = 3e-44
Identities = 139/475 (29%), Positives = 231/475 (48%), Gaps = 60/475 (12%)
Query: 4 LPFIII-IPLFGAFSMPIVSLLKGKAKEIWA--------TIISFAT-----LIVGIEVFR 49
+PFI + +P+ + + + +WA ++ FAT LI +++
Sbjct: 3 IPFIPLPVPMLIGVGLLLFPTATKNIRRMWAFPSILLLSIVMIFATNLSIQLINSSSIYQ 62
Query: 50 EVWSGGTIVYALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHD 109
VWS + L + DF + + +D +IM ++IT V + ++YS YM HD
Sbjct: 63 YVWS-----WTLNN-------DFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMAHD 110
Query: 110 TGLEKYYTLILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKY 169
G +++ + MLG+ + ++ Y+F E++ + SY L+ F A K
Sbjct: 111 QGYLRFFAYMSFFSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPLAANACQKA 170
Query: 170 MFVGSLASSFVLLGIALLYGQYGTLTMGYL------AVKMSENPTIVAKIALALFLGGLL 223
+ +LLGI Y G+ L + +E A + AL G +
Sbjct: 171 FVTNRVGDFGLLLGIFGFYWITGSFEFRDLFEIFNNLISNNEINYPFATLCAALLFAGAV 230
Query: 224 FKSGAAPVHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWI 283
KS P+H+WL DA P+ ISA++ + GI+ +AR++ +F + P + +I
Sbjct: 231 AKSAQFPLHVWLPDA-MEGPTPISALIHAATMVAAGIFLVARLL-PLF--IVIPYIMNFI 286
Query: 284 IIIFACITLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGA 343
+I IT+++G +A+ Q+D+KR LAYS++ Q+GY++L LG+G + A
Sbjct: 287 ALI-GIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMG-----------SYRSA 334
Query: 344 IYHTVNHALMKALLFLVAGVVLHELGT---------RNLNELSGLAKTMPKTTFAFLIGA 394
++H + HA KALLFL +G V+H + T +N+ + GL K +P T +FL G
Sbjct: 335 LFHLITHAYSKALLFLGSGSVIHSMETIVGYSPDKSQNMVLMGGLTKHVPITKISFLFGT 394
Query: 395 AAIVGMPPLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
++ G+PPL F SK I S L++P+ IA TA TA Y+ R+ L TF G
Sbjct: 395 LSLCGIPPLACFWSKDEILNDSWLYSPIFAIIA-WATAGLTAFYMFRIYLLTFEG 448
>gb|AAG34770.1| (AF207968) NADH dehydrogenase subunit F [Cobaea scandens]
Length = 742
Score = 180 bits (453), Expect = 3e-44
Identities = 138/466 (29%), Positives = 231/466 (48%), Gaps = 42/466 (9%)
Query: 4 LPFIII-IPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVY 59
+PF+ + +P+ + + + + +WA ++ T+I+ I + + +I
Sbjct: 11 IPFVPLQVPVLIGMGLLLFPRATKQLRRMWAFQSVLLLSITMILSIILSIQQIKNSSIYQ 70
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
+GS DF + + +D +IM ++IT V + ++YS YM HD G K++ +
Sbjct: 71 YIGSWIITN--DFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMSHDQGYLKFFAYM 128
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
MLG+ + ++ Y+F E++ + SY L+ F A K +
Sbjct: 129 SFFSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRTLSANACQKAFLTNRVGDFG 188
Query: 180 VLLGIALLYGQYGTL-------TMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVH 232
+LLGI Y G+L L N V AL LF G + KS P+H
Sbjct: 189 LLLGIFGFYWITGSLEFRDVFEIFNNLIYNNEVNILFVFLCALLLFAGAVA-KSAQFPLH 247
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ + GI+ +AR++ +F + P + +I +I + IT+
Sbjct: 248 VWLPDA-MEGPTPISALIHAATMVAAGIFLVARLL-PLF--IVIPYLMNFISLI-SIITV 302
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +A+ Q+D+KR LAYS++ Q+GY++L LG+G + A++H + HA
Sbjct: 303 FLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMG-----------SYRIALFHLITHAY 351
Query: 353 MKALLFLVAGVVLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G ++H + T +N+ + GL K +P T +FL+G ++ G+PPL
Sbjct: 352 SKALLFLGSGSLIHSMETVVGYSPNKSQNMVLMGGLTKYVPITKISFLLGTLSLCGIPPL 411
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I S L++P+ IA TA TA Y+ R+ L TF G
Sbjct: 412 ACFWSKDEILNDSWLYSPIFAIIA-WSTAGLTAFYMFRIYLLTFEG 456
>gb|AAA64772.1| (U21967) NADH dehydrogenase F [Bambusa stenostachya]
Length = 702
Score = 180 bits (452), Expect = 3e-44
Identities = 141/466 (30%), Positives = 230/466 (49%), Gaps = 46/466 (9%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVYA 60
LP +I+ + F + ++ + IWA ++ ++ + + + +G +I
Sbjct: 6 LPLPVIMSM--GFGLILIPTATKNLRRIWAFPSVLLLSIAMVFSVHLSIQQINGSSIYQY 63
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 64 LWSWTV--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYIS 121
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
MLG+ + ++ Y F E++ + SY L+ F A K + +
Sbjct: 122 FFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGL 181
Query: 181 LLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPVH 232
LLGI + G+L L K++ N + A LFLG + KS P+H
Sbjct: 182 LLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPLH 239
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ ++ GI+ +AR++ +F I+ + I + ITL
Sbjct: 240 VWLPDA-MEGPTPISALIHATMV-AAGIFLLARLL-PLF---ISLPLIMSFISLVGTITL 293
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 294 FLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAY 342
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+PPL
Sbjct: 343 SKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPPL 402
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 403 ACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 447
>pir||T12748 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 -
Cephalostachyum pergracile chloroplast (fragment)
>gi|755829|gb|AAA64773.1| (U21968) NADH dehydrogenase F
[Cephalostachyum pergracile]
Length = 706
Score = 180 bits (452), Expect = 3e-44
Identities = 141/466 (30%), Positives = 230/466 (49%), Gaps = 46/466 (9%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVYA 60
LP +I+ + F + ++ + IWA ++ ++ + + + +G +I
Sbjct: 10 LPLPVIMSM--GFGLILIPTATKNLRRIWAFPCVLLLSIAMVFSVHLSIQQINGSSIYQY 67
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 68 LWSWTV--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYIS 125
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
MLG+ + ++ Y F E++ + SY L+ F A K + +
Sbjct: 126 FFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGL 185
Query: 181 LLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPVH 232
LLGI + G+L L K++ N + A LFLG + KS P+H
Sbjct: 186 LLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPLH 243
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ ++ GI+ +AR++ +F I+ + I + ITL
Sbjct: 244 VWLPDA-MEGPTPISALIHATMV-AAGIFLLARLL-PLF---ISLPLIMSFISLVGTITL 297
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 298 FLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAY 346
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+PPL
Sbjct: 347 SKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPPL 406
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 407 ACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 451
>gb|AAD26247.1| (AF117430) NADH dehydrogenase [Sorghum stipoideum]
Length = 702
Score = 180 bits (452), Expect = 3e-44
Identities = 145/468 (30%), Positives = 228/468 (47%), Gaps = 49/468 (10%)
Query: 4 LPFIIIIPL-FGAFSMPIVSLLKGKAKEIWA----TIISFATLIVGIEVFREVWSGGTIV 58
LP +I+ + FG F +P + + IWA ++S A ++ + + + +G +I
Sbjct: 6 LPLPVIMSMGFGLFLIPTATK---NLRRIWAFPSILLLSIA-MVFSLHLSIQQINGSSIY 61
Query: 59 YALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTL 118
L S T DF + + VD +IM+++IT V L ++YS +YM HD G +++
Sbjct: 62 QYLWSWTI--NNDFSLEFGYLVDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVY 119
Query: 119 ILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASS 178
I MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 120 ISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGXF 179
Query: 179 FVLLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAP 230
+LLGI + G+L L K++ N + A LFLG + KS P
Sbjct: 180 GLLLGILGFFWITGSLEXRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFP 237
Query: 231 VHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACI 290
+H+WL DA P+ ISA++ + GI+ +AR++ +F I+ + I + I
Sbjct: 238 LHVWLPDA-MEGPTPISALIHAATMVAAGIFLLARLL-PLF---ISLPLIMSFISLVGTI 292
Query: 291 TLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNH 350
TL +G +A+ Q D+KR LAYS++ Q+GY LGIG + A++H + H
Sbjct: 293 TLFLGATLALAQRDIKRSLAYSTMSQLGYKKXALGIG-----------SYQAALFHLITH 341
Query: 351 ALMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMP 401
A KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+P
Sbjct: 342 AYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIP 401
Query: 402 PLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYVR--VLFTFFG 447
PL F SK I +S L++P G IA TA TA Y+ L TF G
Sbjct: 402 PLACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAXYMSRIYLLTFDG 448
>gb|AAF25177.1|AF182349_1 (AF182349) NADH dehydrogenase [Rhipidocladum pittieri]
Length = 702
Score = 180 bits (452), Expect = 3e-44
Identities = 140/466 (30%), Positives = 228/466 (48%), Gaps = 45/466 (9%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVYA 60
LP +I+ + F + ++ + IWA + ++ + + + +G +I
Sbjct: 6 LPLPVIMSM--GFGLILIPTATKNLRRIWAFPSVLFLSIAMVFSVHLSVQQINGSSIYQY 63
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 64 LWSWTV--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFIYIS 121
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
MLG+ + ++ Y F E++ + SY L+ F A K + +
Sbjct: 122 FFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGL 181
Query: 181 LLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPVH 232
LLGI + G+L L K++ N + A LFLG + KS P+H
Sbjct: 182 LLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPLH 239
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ + GI+ +AR++ +F I+ + I + ITL
Sbjct: 240 VWLPDA-MEGPTPISALIHEAXMVAAGIFLLARLL-PLF---ISLPLIMSFISLVGTITL 294
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 295 FLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAY 343
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G ++H + ++N+ + GL K +P T FL G ++ G+PPL
Sbjct: 344 SKALLFLGSGSIIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRSTFLWGTLSLCGIPPL 403
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 404 ACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 448
>gb|AAF25179.1|AF182351_1 (AF182351) NADH dehydrogenase [Hickelia madagascariensis]
Length = 704
Score = 180 bits (452), Expect = 3e-44
Identities = 140/466 (30%), Positives = 229/466 (49%), Gaps = 45/466 (9%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVYA 60
LP +I+ + F + ++ + IWA ++ ++ + + + +G +I
Sbjct: 6 LPLPVIMSM--GFGLILIPTATKNLRRIWAFPSVLLLSIAMVFSVHLSIQQINGSSIYQY 63
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 64 LWSWTV--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYIS 121
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
MLG+ + ++ Y F E++ + SY L+ F A K + +
Sbjct: 122 FFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGL 181
Query: 181 LLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPVH 232
LLGI + G+L L K++ N + A LFLG + KS P+H
Sbjct: 182 LLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPLH 239
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ + GI+ +AR++ +F I+ + I + ITL
Sbjct: 240 VWLPDA-MEGPTPISALIHEATMVAAGIFLLARLL-PLF---ISLPLIMSFISLVGTITL 294
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +A+ Q D+K+ LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 295 FLGAPLALAQRDIKKSLAYSTMSQLGYMMLALGIG-----------SSQAALFHLITHAY 343
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+PPL
Sbjct: 344 SKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPPL 403
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 404 ACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 448
>gb|AAG12213.1| (AF163447) NADH dehydrogenase subunit F [Carex elynoides]
Length = 688
Score = 180 bits (452), Expect = 3e-44
Identities = 129/455 (28%), Positives = 211/455 (46%), Gaps = 39/455 (8%)
Query: 8 IIIPLFGAFSMPIVSLLKGKAKEIWATIISF---ATLIVGIEVFREVWSGGTIVYALGSE 64
+++P+ + ++ + +WA F T+I + + G I L S
Sbjct: 4 LLVPISIGLGLLLIPTAIKNIRRVWAFPSIFFLIITMIFSLNFSIQQIHGSLIYQYLWSW 63
Query: 65 TPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILEL 124
T DF + + +D +IM+ +IT V ++YS YM HD +++ + +
Sbjct: 64 TI--NKDFSLEFGYLIDSLTSIMLTLITTVGITVLIYSDNYMSHDQAYLRFFAYLNLFNA 121
Query: 125 GMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGI 184
MLG+ + ++ Y+F EI+ I SY L+ F A K + +LLGI
Sbjct: 122 SMLGLVTSSNLIQIYIFWEIVGICSYLLIGFWFTRPLAANACQKAFVTNRVGDFGLLLGI 181
Query: 185 ALLYGQYGTLTM-------GYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLAD 237
Y G+ L K N LF+G + KS P+H+WL D
Sbjct: 182 LGFYWIIGSFEFRDLFEITNNLIQKNGVNSLFTTLCTFLLFVGAIA-KSAQFPLHIWLPD 240
Query: 238 AHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNA 297
A P+ +SA++ + G++ +AR +F + + +II ITL +G
Sbjct: 241 A-MEGPTPVSALIHAATMVAAGVFLVAR----LFPLLLITPNIMYIISSIGLITLFLGAT 295
Query: 298 MAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALL 357
+A+ Q D+KR LAYS++ Q+GYI+L LGIG + A++H + HA KALL
Sbjct: 296 LALAQIDIKRSLAYSTMSQLGYIILALGIG-----------SSRTALFHLITHAYSKALL 344
Query: 358 FLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFAS 408
FL +G ++H + +N+ + GL K +P T AFL+G ++ G+PPL F S
Sbjct: 345 FLGSGSIIHSMEPVVGYSPCKNQNMVLMGGLTKYIPITRTAFLLGTLSLCGIPPLACFWS 404
Query: 409 KWLIYESSALFNPLLGAIAIIGTAFCTAAYVRVLF 443
K I +S L++P+ G I T TA Y+ ++
Sbjct: 405 KDEILSNSWLYSPIFGIITYFTTGL-TAFYMXXVY 438
>sp|Q32440|NU5C_HORVU NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 5, CHLOROPLAST
>gi|7432383|pir||T04400 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 5 - barley chloroplast (fragment)
>gi|726170|gb|AAA64207.1| (U22003) NADH dehydrogenase F
[Hordeum vulgare]
Length = 705
Score = 180 bits (451), Expect = 4e-44
Identities = 137/464 (29%), Positives = 224/464 (47%), Gaps = 42/464 (9%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVYA 60
LP +I+ + F + ++ + IWA ++ ++ +++ + +G +I
Sbjct: 6 LPLPVIMSM--GFGLILIPTATKNLRRIWAFPSVLLLSIAMVFSVQLSIQQINGSSIYQY 63
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
L S T DF + + +D +IM+++IT V L ++YS YM HD G +++ I
Sbjct: 64 LWSWTV--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDGYMSHDEGYLRFFVYIS 121
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
MLG+ + ++ Y F E++ + SY L+ F A K + +
Sbjct: 122 FFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGL 181
Query: 181 LLGIALLYGQYGTLTMGYLAVKMSE-------NPTIVAKIALALFLGGLLFKSGAAPVHM 233
LLGI + G+L L + N + A LFLG + KS P+H+
Sbjct: 182 LLGILGFFWITGSLEFRDLFQIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPLHV 240
Query: 234 WLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLI 293
WL DA P+ ISA++ + I+ +AR++ +F I+ + I + ITL
Sbjct: 241 WLPDA-MEGPTPISALIHAATMVAAEIFLLARLL-PLF---ISLPLIMSFISLVGTITLF 295
Query: 294 VGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALM 353
+G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 296 LGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAYS 344
Query: 354 KALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLN 404
KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+PPL
Sbjct: 345 KALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYIPITRTTFLWGTLSLCGIPPLA 404
Query: 405 GFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RVLFTFFG 447
F SK I +S L++P G IA TA TA Y+ R+ FG
Sbjct: 405 CFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFG 447
>gb|AAA64774.1| (U21969) NADH dehydrogenase F [Chimonobambusa marmorea]
Length = 703
Score = 180 bits (451), Expect = 4e-44
Identities = 140/466 (30%), Positives = 230/466 (49%), Gaps = 46/466 (9%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVYA 60
LP +I+ + F + ++ + IWA ++ ++ + + + +G +I
Sbjct: 7 LPLPVIMSM--GFGLILIPTATKNLRRIWAFPSVLLLSIAMVFSVHLSIQQINGSSIYQY 64
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 65 LWSWTV--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYIS 122
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
MLG+ + ++ Y F E++ + SY L+ F A K + +
Sbjct: 123 FFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGL 182
Query: 181 LLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPVH 232
LLGI + G+L L K++ N + A LFLG + KS P+H
Sbjct: 183 LLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPLH 240
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ ++ GI+ +AR++ +F I+ + I + ITL
Sbjct: 241 VWLPDA-MEGPTPISALIHATMV-AAGIFLLARLL-PLF---ISLPLIMSFISLVGTITL 294
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 295 FLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAY 343
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G ++H + ++N+ + GL K +P T FL G ++ G+PPL
Sbjct: 344 SKALLFLGSGSIIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPPL 403
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 404 ACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 448
>pir||T13587 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - moso bamboo
chloroplast (fragment) >gi|755833|gb|AAA64775.1|
(U21970) NADH dehydrogenase F [Phyllostachys edulis]
Length = 701
Score = 180 bits (451), Expect = 4e-44
Identities = 140/466 (30%), Positives = 230/466 (49%), Gaps = 46/466 (9%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVYA 60
LP +I+ + F + ++ + IWA ++ ++ + + + +G +I
Sbjct: 6 LPLPVIMSM--GFGLILIPTATKNLRRIWAFPCVLLLSIAMVFSVHLSIQQINGSSIYQY 63
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 64 LWSWTV--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYIS 121
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
MLG+ + ++ Y F E++ + SY L+ F A K + +
Sbjct: 122 FFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGL 181
Query: 181 LLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPVH 232
LLGI + G+L L K++ N + A LFLG + KS P+H
Sbjct: 182 LLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPLH 239
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ ++ GI+ +AR++ +F I+ + I + ITL
Sbjct: 240 VWLPDA-MEGPTPISALIHATMV-AAGIFLLARLL-PLF---ISLPLIMSFISLVGTITL 293
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 294 FLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAY 342
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G ++H + ++N+ + GL K +P T FL G ++ G+PPL
Sbjct: 343 SKALLFLGSGSIIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPPL 402
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I +S L++P G IA TA TA Y+ R+ L TF G
Sbjct: 403 ACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRIYLLTFDG 447
>pir||T13670 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 -
Streptochaeta angustifolia chloroplast (fragment)
>gi|755853|gb|AAA64700.1| (U21982) NADH dehydrogenase F
[Streptochaeta angustifolia]
Length = 697
Score = 180 bits (451), Expect = 4e-44
Identities = 139/466 (29%), Positives = 226/466 (47%), Gaps = 43/466 (9%)
Query: 3 WLPFIIIIPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVY 59
+LP +I+ + + ++ + IWA ++ ++ + + + +G I
Sbjct: 5 FLPLPVIMSI--GVGLLLIPTATKNLRRIWAFPSVLLLSIAMVFSVHLSIQQINGSFIYQ 62
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
L S T DF + + +D +IM+++IT V + ++YS +YM HD G +++ I
Sbjct: 63 YLWSWTI--NNDFSLEFGYLIDPLTSIMLILITTVGIMVLIYSDDYMSHDEGYLRFFVYI 120
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 121 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 180
Query: 180 VLLGIALLYGQYGTLTMGYLAVKMSE-------NPTIVAKIALALFLGGLLFKSGAAPVH 232
+LLGI + G+L L + N I A LFLG + KS P+H
Sbjct: 181 LLLGILGFFWITGSLEFRDLFQIANNWIPNNGINSLITTLCAFLLFLGAVA-KSAQFPLH 239
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ + GI+ +AR++ +F I+ + I + ITL
Sbjct: 240 VWLPDA-MEGPTPISALIHAATMVAAGIFLLARLL-PLF---ISLPLIMSFISLVGTITL 294
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 295 FLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAY 343
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G ++H + ++N+ + GL K +P T FL G ++ G+PPL
Sbjct: 344 SKALLFLGSGSIIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLCGTLSLCGIPPL 403
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I +S L++P G IA TA TA Y+ RV L TF G
Sbjct: 404 ACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRVYLLTFDG 448
>pir||B71640 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain L1 RP792 -
Rickettsia prowazekii >gi|3861319|emb|CAA15218.1|
(AJ235273) NADH DEHYDROGENASE I CHAIN L (nuoL1)
[Rickettsia prowazekii]
Length = 653
Score = 180 bits (451), Expect = 4e-44
Identities = 140/494 (28%), Positives = 241/494 (48%), Gaps = 37/494 (7%)
Query: 7 IIIIPLFGAFSMPI-VSLLKGKAKEIWATIISFATLIVGIEVFREVWSGGTIVYALGSET 65
III+PL + + ++++ K +I A + + + +F +V G I++
Sbjct: 10 IIILPLVSSIINGLFLNIIDKKLAKIIAISFLSLSALFSLVIFCDVTLVGKIIHI--KLL 67
Query: 66 PFGKADFP-IRIVWEV--DKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILIL 122
P+ +F +++ W + D+ +IM + +TFVS + +YSL YM D G+ ++ + + +
Sbjct: 68 PW--IEFKNLQVNWSIYIDQLTSIMFIAVTFVSSVVHIYSLGYMAEDKGIIRFLSFLSLF 125
Query: 123 ELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLL 182
ML + + + E + + SY L+ F H +A IK ++ +L
Sbjct: 126 TFFMLMLVSADNFLQLFCGWEGVGVCSYLLIGFWHSKESANKAAIKAFITNRVSDFAFIL 185
Query: 183 GIALLYGQYGTLTMG--YLAVKMSENPTIVAK------IALALFLGGLLFKSGAAPVHMW 234
GI + YG+ + + K+ N I I L LF+G + KS +H+W
Sbjct: 186 GIITIIVYYGSANYKDVFSSAKLLSNTKIFVHFSILDIICLLLFIG-CMGKSAQIGLHVW 244
Query: 235 LADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIV 294
L DA P+ +SA++ + G++ +AR + + I V I I IT +
Sbjct: 245 LPDAMEG-PTPVSALIHAATMVTAGVFLVARCSYLFEYSPI----VLQFITIIGGITCLF 299
Query: 295 GNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMK 354
++A++Q D+K+++AYS+ Q+GY+ + G+ +Y S AI+H V HA K
Sbjct: 300 AASIAIMQSDIKKIIAYSTCSQLGYMFMACGVS--SYNS---------AIFHLVTHAFFK 348
Query: 355 ALLFLVAGVVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYE 414
ALLFL AG V+H + N+ ++ GL MP T FLIG+ A++G+ PL+GF SK LI E
Sbjct: 349 ALLFLSAGNVIHAVNEHNIFKMGGLINKMPITYGNFLIGSLALIGIYPLSGFYSKDLILE 408
Query: 415 ---SSALFNPLLGAIAIIGTAFCTAAYVRVLFTFFGRPSEKVMK-AKDPGATMLLPIFIL 470
SS F + G I I TA + + ++F + + V K A +P M P+ +L
Sbjct: 409 ATYSSGSFMFIFGIITAILTAIYSMKIIILVFHGKTKLEKDVFKHAHEPTKIMNNPLILL 468
Query: 471 VIAIIGMGLFPWQI 484
V G+ + +
Sbjct: 469 VAGSFFSGMIGYYL 482
>gb|AAF08888.1|AF194857_1 (AF194857) NADH dehydrogenase [Portulacaria afra]
Length = 717
Score = 180 bits (451), Expect = 4e-44
Identities = 139/475 (29%), Positives = 232/475 (48%), Gaps = 60/475 (12%)
Query: 4 LPFIII-IPLFGAFSMPIVSLLKGKAKEIWA-------TIISFATLIVGIE------VFR 49
+PFI + +PL + + + IWA +I+ ++ + I+ +++
Sbjct: 11 IPFIPLPVPLLIGMGLLLFPTTTKNLRRIWAFSSILLLSIVMLFSMKLSIQQINSNSIYQ 70
Query: 50 EVWSGGTIVYALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHD 109
VWS TI DF + + +D +IM ++IT V+ L ++YS YM HD
Sbjct: 71 YVWSW-TI-----------NNDFSFELGYLIDPLTSIMSMLITTVAILVLIYSDNYMFHD 118
Query: 110 TGLEKYYTLILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKY 169
G +++ + MLG+ + ++ Y+F E++ + SY L+ F A K
Sbjct: 119 QGYLRFFAYMSFFNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKA 178
Query: 170 MFVGSLASSFVLLGIALLYGQYGTLTMGYL------AVKMSENPTIVAKIALALFLGGLL 223
+ +LLGI +Y G+ L + +E + + L G +
Sbjct: 179 FVTNRVGDFGLLLGILGIYWITGSFEFRDLFEIFNNLINNNEIHFLFCILCTFLLFAGAV 238
Query: 224 FKSGAAPVHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWI 283
KS P+H+WL DA P+ ISA++ + GI+ +AR++ +F + P + I
Sbjct: 239 AKSAQFPLHVWLPDA-MEGPTPISALIHAATMVAAGIFLVARLL-PLF--VVIPYIMNGI 294
Query: 284 IIIFACITLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGA 343
I +T+++G +A+ Q+D+KR LAYS++ Q+GY++L LGIG + A
Sbjct: 295 AFI-GIVTVLLGATLALAQKDIKRSLAYSTMSQLGYMMLALGIG-----------SYRAA 342
Query: 344 IYHTVNHALMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGA 394
++H + HA KALLFL +G V+H + ++N+ + GL K +P T AFLIG
Sbjct: 343 LFHLITHAYSKALLFLGSGSVIHSMEAIVGYSPDKSQNMVLMGGLRKHVPITKTAFLIGT 402
Query: 395 AAIVGMPPLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
++ G+PPL F SK I + S L++P+ IA TA TA Y+ R+ L TF G
Sbjct: 403 LSLCGIPPLACFWSKDEILDDSWLYSPIFAIIAYF-TAGLTAFYMFRIYLLTFEG 456
>gb|AAF25181.1|AF182353_1 (AF182353) NADH dehydrogenase [Eremitis sp. Clark and Zhang 1343]
Length = 702
Score = 180 bits (451), Expect = 4e-44
Identities = 138/465 (29%), Positives = 223/465 (47%), Gaps = 43/465 (9%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWA-TIISFATLIVGIEVFREVW--SGGTIVYA 60
LP +I+ + F + ++ + IWA + F ++ + V+ + +G +I
Sbjct: 6 LPLPVIMSM--GFGLILIPTATKNLRRIWAFPSVLFLSIAMVFSVYLSIQQINGSSIYQY 63
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
L S T DF + + +D +IM+++IT V L ++YS +YM +D G +++ I
Sbjct: 64 LWSWTV--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSYDEGYLRFFVYIS 121
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
MLG+ + + Y F E++ + SY L+ F A K + +
Sbjct: 122 FFNTSMLGLVTSSNFIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFGL 181
Query: 181 LLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPVH 232
LLGI + G+L L K++ N + A LFLG + KS P+H
Sbjct: 182 LLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFLGAVA-KSAQFPLH 239
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ + GI+ +AR +F +F I+ + I + ITL
Sbjct: 240 VWLPDA-MEGPTPISALIHAAXMVAAGIFLLAR-LFPLF---ISLPLIMIFISLVGTITL 294
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 295 FLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAY 343
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+PPL
Sbjct: 344 SKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYIPITRTTFLWGTLSLCGIPPL 403
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYVRV-LFTFFG 447
F SK I +S L++P G IA R+ L TF G
Sbjct: 404 ACFWSKDEILSNSWLYSPFFGIIASFAAGLTAFYMFRIYLLTFDG 448
>gb|AAF44106.1| (AF230247) NADH dehydrogenase [Papuodendron lepidotum]
Length = 695
Score = 180 bits (451), Expect = 4e-44
Identities = 131/467 (28%), Positives = 227/467 (48%), Gaps = 44/467 (9%)
Query: 4 LPFIII-IPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVY 59
+PF+ + IP+ + + + +WA ++ +I +++ + +G +I
Sbjct: 11 IPFVPLPIPILIGMGLLLFPTATKNLRRMWAFHNILLLSIVMIFSVDLSIQQINGSSIYQ 70
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
+ S T DF + +D +IM ++IT V ++YS YM HD G +++ +
Sbjct: 71 YVWSWTI--NNDFSFEFGYFIDSLTSIMSMLITTVGIFVLIYSDNYMSHDQGYLRFFAYM 128
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
+ MLG+ + ++ Y+F E++ + SY L+ F A K +
Sbjct: 129 SLFNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPAAANACQKAFVTNRIGDFG 188
Query: 180 VLLGIALLYGQYGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHM 233
+LLGI Y G+ L + +E + + +L G + KS P+H+
Sbjct: 189 LLLGILGFYWITGSFEFQDLFEIFNNLIYNNEIHFLFVTLCASLLFAGAVAKSAQFPLHV 248
Query: 234 WLADAHPAAPSSISAMLSGLVIKIGGIYAIARV--VFSIFWPAINPATVGWIIIIFACIT 291
WL DA P+ ISA++ + GI+ +AR+ +F + +N +I + IT
Sbjct: 249 WLPDA-MEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMN------LISLIGIIT 301
Query: 292 LIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHA 351
+++G +A+ Q+D+KR LAYS++ Q+GY++L LG+G + A++H + HA
Sbjct: 302 VLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMG-----------SYRAALFHLITHA 350
Query: 352 LMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPP 402
KALLFL +G ++H + ++N+ + GL K P T AFL+G ++ G+PP
Sbjct: 351 YSKALLFLGSGSIIHSMEAVVGYSPEKSQNMVLMGGLKKHAPITQIAFLVGTLSLCGIPP 410
Query: 403 LNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
L F SK I S L++P+ IA TA TA Y+ R+ L TF G
Sbjct: 411 LACFWSKDEILSDSWLYSPIFAIIA-WSTAGLTAFYMFRIYLLTFEG 456
>emb|CAC03501.1| (AJ250389) NADH dehydrogenase subunit [Mohavea confertiflora]
Length = 708
Score = 180 bits (451), Expect = 4e-44
Identities = 136/478 (28%), Positives = 229/478 (47%), Gaps = 66/478 (13%)
Query: 4 LPFIII-IPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGI-------------EVFR 49
+PF+ + +P+ + + + + +WA I IV I +++
Sbjct: 11 IPFVPLPVPMLIGVGLLVFPIATKNLRRMWAFISILLLSIVMIFSTHLSIHQINSNSIYQ 70
Query: 50 EVWSGGTIVYALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHD 109
+WS + L + DF + + +D +IM+++IT V + ++YS YM HD
Sbjct: 71 YIWS-----WTLDN-------DFSLEFGYLIDPLASIMLMLITTVGIMVLIYSDNYMAHD 118
Query: 110 TGLEKYYTLILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKY 169
G ++++ + MLG+ + ++ Y+F E++ + SY L+ F A K
Sbjct: 119 QGYLRFFSYMSFFSTSMLGLVTSSNLIQIYIFWELVGVCSYLLIGFWFTRPLAANACQKA 178
Query: 170 MFVGSLASSFVLLGIALLYGQYGTL-------TMGYLAVKMSENPTIVAKIALALFLGGL 222
+ +LLGI Y G+ + L N V A LF G +
Sbjct: 179 FVTNRVGDFGLLLGILGFYWITGSFEFLDLFEILNNLIYNNEVNFPFVTLCATLLFFGAV 238
Query: 223 LFKSGAAPVHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARV--VFSIFWPAINPATV 280
KS P+H+WL DA P+ ISA++ + GI+ +AR+ +F + +N
Sbjct: 239 A-KSAQFPLHVWLPDA-MEGPTPISALIHAATMVAAGIFLVARLLPLFLVIPYIMN---- 292
Query: 281 GWIIIIFACITLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIAL 340
+I + IT+++G +A+ Q+D+KR LAYS++ Q+GY++L LG+G +
Sbjct: 293 --LISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMG-----------SY 339
Query: 341 AGAIYHTVNHALMKALLFLVAGVVLHELGT---------RNLNELSGLAKTMPKTTFAFL 391
A++H + HA KALLFL +G V+H + T +N+ + GL K +P T +FL
Sbjct: 340 RSALFHLITHAYSKALLFLGSGSVIHSMETIVGYSPDKSQNMVLMGGLTKHVPITKTSFL 399
Query: 392 IGAAAIVGMPPLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
+G ++ G+PPL F SK I S L++P+ IA TA TA Y+ R+ L TF G
Sbjct: 400 LGTLSLCGIPPLACFWSKDEILNDSWLYSPIFAIIA-WATAGLTAFYMFRIYLLTFEG 456
>emb|CAC08259.1| (AL392146) NADH dehydrogenase subunit [Streptomyces coelicolor]
Length = 664
Score = 180 bits (451), Expect = 4e-44
Identities = 146/541 (26%), Positives = 253/541 (45%), Gaps = 62/541 (11%)
Query: 1 MTWLPFIIIIPLFGAFSMPIVSLLKGKAKEIWA----TIISFATLIVGIEVFREVWSGGT 56
MT +++PL F LL G++ +A + + A+L++ V GG
Sbjct: 1 MTTTTLAVLVPLL-PFLGAAAGLLLGRSAPGFARPLAVLPTLASLVLAALVAARQ-GGGR 58
Query: 57 IVYALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYY 116
+ A+ TP G P+ + +D F A++ +++ V+ +YS Y++ D Y
Sbjct: 59 ALDAVTELTPTGSV--PVELALHIDGFAALVAVLVGTVATCVQIYSTGYLRDDPRYASYA 116
Query: 117 TLILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLA 176
L+ + M + +GD+ V E+M I SY LV +T E A +K V L
Sbjct: 117 ALVSLFTSAMFLVVYSGDLMVLLVGWEVMGICSYFLVGHYWETPEARAASLKAFLVTKLG 176
Query: 177 SSFVLLGIALLYGQYG----TLTMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVH 232
L+G+ L + G T +G +A ++PT++A L L G+ KS P+H
Sbjct: 177 DVPFLIGLLALVTEAGSFRITKILGAVASGSLDHPTLIA----LLLLAGVAGKSAQFPLH 232
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIII-IFACIT 291
WL DA A P+ +SA++ + G+Y +AR++ P + +++ + A +T
Sbjct: 233 TWLPDA-MAGPTPVSALIHAATMVAAGVYFVARLL-----PLFEASRAAMVVLAVMAAVT 286
Query: 292 LIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHA 351
++ A+ Q+D+KR+LAYS++GQ+GY+ G +A G + A++H ++H
Sbjct: 287 MVGSALAALAQDDIKRVLAYSTIGQLGYM-----TGALATGDR------GAAVFHLLSHG 335
Query: 352 LMKALLFLVAGVVLHELGTRNLNELS---GLAKTMPKTTFAFLIGAAAIVGMPPLNGFAS 408
KALLFL AGV++H GT +L +S GL +P + + A+ +PP +GF S
Sbjct: 336 AFKALLFLAAGVIIHAAGTNSLAAMSRMRGLRDRVPDAYWTMTVALLALAAIPPFSGFFS 395
Query: 409 KWLIYESSALFNPLLG-------------AIAIIGTAFCTAAYVRVLF--TFFGRPSEKV 453
K + A + + G +A + TA TAAY L+ F GR +E
Sbjct: 396 KESVL--GAAEHVVTGHTEHAPGAAGWTVLVAGLITALLTAAYAARLWLLAFRGRGAEAP 453
Query: 454 MKAKDPGATMLLPIFILVIAIIGMG-----LFPWQISDKFMVPAAKSLWDIMGYVISLMG 508
+ P M +++L + + +G L P + + P + ++G ++L+G
Sbjct: 454 DHGRQP-LVMNAVLWVLALPSLALGGLAFRLLPDWFDGQDLTPTLTT--SVLGTGVALVG 510
Query: 509 G 509
G
Sbjct: 511 G 511
>pir||T13572 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Pharus
latifolius chloroplast (fragment)
>gi|726150|gb|AAA64197.1| (U21993) NADH dehydrogenase F
[Pharus latifolius]
Length = 694
Score = 179 bits (450), Expect = 6e-44
Identities = 142/467 (30%), Positives = 230/467 (48%), Gaps = 47/467 (10%)
Query: 3 WLPFIIIIPL-FGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIV 58
+LP +I+ + FG F +P + + IWA ++ ++ + + + +G I
Sbjct: 5 FLPLPVIMSIGFGLFLIPTATK---NLRRIWAFPSVLLLNIAMVFSVYLSIQQINGSFIY 61
Query: 59 YALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTL 118
L S T DF + + VD +IM+++IT + L ++YS +YM HD G +++
Sbjct: 62 QYLWSWTI--NNDFSLEFGYLVDPLTSIMLILITTIGILVLIYSDDYMSHDEGYLRFFVY 119
Query: 119 ILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASS 178
I MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 120 ISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPLAASACQKAFVTNRVGDF 179
Query: 179 FVLLGIALLYGQYGTLTMGYL-------AVKMSENPTIVAKIALALFLGGLLFKSGAAPV 231
+LLGI + G+L L N ++ A LFLG + KS P+
Sbjct: 180 GLLLGILGFFWITGSLEFRDLFKIANNWIPNSGINSLLITLCAFLLFLGAVA-KSAQFPL 238
Query: 232 HMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACIT 291
H+WL DA P+ ISA++ + + ++ +AR +F +F I+ + I + IT
Sbjct: 239 HVWLPDA-MEGPTPISALIHAAM--VAAVFLLAR-LFPLF---ISLPLIMSFISLVGTIT 291
Query: 292 LIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHA 351
L +G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 292 LFLGATLALAQIDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHA 340
Query: 352 LMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPP 402
KALLFL +G ++H + ++N+ + GL K +P T FL G ++ G+PP
Sbjct: 341 YSKALLFLGSGSIIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPP 400
Query: 403 LNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
L F SK I +S L++P+ G IA TA TA Y+ RV L TF G
Sbjct: 401 LACFWSKDEILSNSWLYSPIFGIIASF-TAGLTAFYMFRVYLLTFDG 446
>gb|AAA64779.1| (U21974) NADH dehydrogenase F [Leersia virginica]
Length = 697
Score = 179 bits (450), Expect = 6e-44
Identities = 145/468 (30%), Positives = 231/468 (48%), Gaps = 48/468 (10%)
Query: 3 WLPFIIIIPL-FGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIV 58
+LP +I+ + G F +P + + IWA ++ ++ + + + +G +I
Sbjct: 7 FLPLPVIMSMGLGLFLIPTATK---NLRRIWAFPSVLLLSIAMVFSVHLSIQQITGSSIY 63
Query: 59 YALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTL 118
L S T DF + + +D +IM+++IT V L ++YS YM HD G +++
Sbjct: 64 QYLWSWTV--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDGYMSHDEGYLRFFVY 121
Query: 119 ILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASS 178
I MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 122 ISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDF 181
Query: 179 FVLLGIALLYGQYGTLTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAP 230
+LLGI + G+L L K++ N + A LFLG + KS P
Sbjct: 182 GLLLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTILCAFLLFLGAVA-KSAQFP 239
Query: 231 VHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACI 290
+H+WL DA P+ ISA++ ++ GI+ IAR++ +F I+ + I + I
Sbjct: 240 LHVWLPDA-MEGPTPISALIHATMV-AAGIFLIARLL-PLF---ISLPLIMSFISLIGTI 293
Query: 291 TLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNH 350
TL +G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + H
Sbjct: 294 TLFLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITH 342
Query: 351 ALMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMP 401
A KALLFL +G V+H + ++N+ + GL K +P T FL G ++ G+P
Sbjct: 343 AYSKALLFLGSGSVIHSMEPLVGYSPDKSQNMVLMGGLRKYIPITRTCFLWGTLSLCGIP 402
Query: 402 PLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
PL F SK I +S L++P G IA TA TA Y+ RV L TF G
Sbjct: 403 PLACFWSKDEILSNSWLYSPFFGIIASF-TAGLTAFYMFRVYLLTFDG 449
>pir||T13085 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Felicia
bergeriana chloroplast >gi|845353|gb|AAC37452.1|
(L39445) NADH dehydrogenase [Felicia bergeriana]
Length = 741
Score = 179 bits (450), Expect = 6e-44
Identities = 127/414 (30%), Positives = 206/414 (49%), Gaps = 34/414 (8%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V L ++YS YM HD G +++ + MLG+
Sbjct: 80 DFSLEFGYLIDPLTSIMSILITTVGILVLIYSDNYMSHDHGYLRFFAYMSFFSTSMLGLV 139
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F +A K + +LLGI Y
Sbjct: 140 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPVAAKACQKAFVTNRVGDFGLLLGILGFYWV 199
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ L + +E + + L G + KS P+H+WL DA P+
Sbjct: 200 TGSFEFRDLFEIFNNLISNNEVDFLFVTLCAILLFAGAVAKSAQFPLHVWLPDA-MEGPT 258
Query: 245 SISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQED 304
ISA++ + GI+ +AR++ +F + P + +I +I IT+ +G +A+ Q+D
Sbjct: 259 PISALIHAATMVAAGIFLVARLM-PLF--IVIPHIMNFISLI-GIITVFLGATLALAQKD 314
Query: 305 MKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVV 364
+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +G V
Sbjct: 315 IKRGLAYSTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSKALLFLGSGSV 363
Query: 365 LHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES 415
+H + T +N+ + GL K +P T +FL+G ++ G+PPL F SK I
Sbjct: 364 IHSMETLVGYCPKKSQNMVLMGGLTKHVPITKNSFLLGTLSLCGIPPLACFWSKDEILND 423
Query: 416 SALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFGRPSEKVMKAKDPGATMLLPI 467
S L++P+ IA TA TA Y+ R+ L TF G + G T L I
Sbjct: 424 SWLYSPIFAIIA-WSTAGLTAFYMCRIYLLTFEGHLNVHFQNYSGKGNTPLYSI 476
>pir||E71839 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 [similarity] -
Helicobacter pylori (strain J99)
>gi|4155782|gb|AAD06758.1| (AE001545) NADH
oxidoreductase I [Helicobacter pylori J99]
Length = 612
Score = 179 bits (450), Expect = 6e-44
Identities = 126/480 (26%), Positives = 238/480 (49%), Gaps = 33/480 (6%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVG----IEVFREVWSGGTIVY 59
L ++ +PL GA L KAK + + + ++V + +F + W +
Sbjct: 7 LSVVLFLPLIGAV---YAGLFGAKAKALHVGVFNSLCVLVSFIGAVVLFIQAWHHQSYEK 63
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
L G +F + +D A+M++++T VSFL +YS+ YM+HDTG +Y++ +
Sbjct: 64 YLFDWIVVG--NFKVGFSLMLDNINAVMIVVVTLVSFLVHVYSIGYMEHDTGFNRYFSYL 121
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
ML + ++ + ++ E + + SY L+ F + A I+ + +
Sbjct: 122 SGFVFSMLVLVLSDNFLGLFIGWEGVGLCSYLLIGFWYHKKSANNASIEAFVMNRITDLG 181
Query: 180 VLLGIALLYGQYGTLT-MGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADA 238
+L+GI L++ +GTL ++ + + +++ I++ LF+G + KS P+H WLA+A
Sbjct: 182 MLMGIILIFWNFGTLQYKEVFSMLNNADYSMLFYISVFLFIGA-MGKSAQFPMHTWLANA 240
Query: 239 HPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAM 298
P+ +SA++ + G+Y I R + + A+ VG+ I + G +M
Sbjct: 241 -MEGPTPVSALIHAATMVTAGVYLIIRA--NPLYSAV--FEVGYFIACLGAFVALFGASM 295
Query: 299 AVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLF 358
A+V +D+KR++AYS++ Q+GY+ + G+G A A A++H HA K+LLF
Sbjct: 296 ALVNKDLKRIVAYSTLSQLGYMFVAAGLG-----------AYAIALFHLFTHAFFKSLLF 344
Query: 359 LVAGVVLHEL-GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYE-SS 416
L +G V+H + ++ ++ L K M T +IG+ A+ G+ P G+ SK I E +
Sbjct: 345 LGSGNVMHAMEDNLDITKMGALYKPMRITAVFMIIGSVALCGIYPFAGYFSKDKILEVAF 404
Query: 417 ALFNPLLGAIAIIGTAFCTAAYVRVLFTFFGRPSEKVM----KAKDPGATMLLPIFILVI 472
+ + +L + +IG F R++ F P + + +AK+ +LP+ +L +
Sbjct: 405 GMHHHILWFVLLIGAIFTAFYSFRLIMLVFFAPKQHEINHPHEAKNFMLLSMLPLGVLAV 464
>gb|AAF37200.1| (AF191811) NADH dehydrogenase subunit F [Carex humboldtiana]
Length = 702
Score = 179 bits (450), Expect = 6e-44
Identities = 129/455 (28%), Positives = 214/455 (46%), Gaps = 38/455 (8%)
Query: 4 LPFIII-IPLFGAFSMPIVSLLKGKAKEIWATIISF---ATLIVGIEVFREVWSGGTIVY 59
+PF+ + +P+ + ++ + IWA F T+I + + + +G I
Sbjct: 4 IPFLSLPVPISVGLGLLLIPTAIKNIRRIWAFPSIFFLIITMIFSLNLSIQQINGSLIYQ 63
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
L S T DF + + +D +IM+ +IT V ++YS YM +D +++ +
Sbjct: 64 YLWSWTI--NKDFSLEFGYLIDSLTSIMLTLITTVGITVLIYSDNYMSYDQAYLRFFAYL 121
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
+ MLG+ + ++ Y+F EI+ I SY L+ F A K +
Sbjct: 122 NLFNASMLGLVTSSNLIQIYIFWEIVGICSYLLIGFWFTRPLAANACQKAFVTNRVGDFG 181
Query: 180 VLLGIALLYGQYGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHM 233
+LLGI Y G+ L +K + ++ + L G + KS P+H+
Sbjct: 182 LLLGILAFYWIIGSFEFRDLFEITNSLIKKNGVNSVFTTLCTFLLFVGAIAKSAQFPLHI 241
Query: 234 WLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLI 293
WL DA P+ ISA++ + G++ +AR +F + + II ITL
Sbjct: 242 WLPDA-MEGPTPISALIHAATMVAAGVFLVAR----LFPLLLITPNIMHIISSIGLITLF 296
Query: 294 VGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALM 353
+G +A+ Q D+KR LAYS++ Q+GYI+L LGIG + A++H + HA
Sbjct: 297 LGATLALAQIDIKRSLAYSTMSQLGYIILALGIG-----------SSRAALFHLITHAYS 345
Query: 354 KALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLN 404
KALLFL +G ++H + +N+ + GL K +P T AFL+G ++ G+PPL
Sbjct: 346 KALLFLGSGSIIHSMEPVVGYSPYKNQNMVLMGGLTKYIPITRTAFLLGTLSLCGIPPLA 405
Query: 405 GFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV 439
F SK I + L++P+ G I T TA Y+
Sbjct: 406 CFWSKDEILSNXWLYSPIFGIITYFTTGL-TAFYM 439
>emb|CAC14148.1| (AJ245399) putative NADH-ubiquinone oxidoreductase subunit
[Sinorhizobium meliloti]
Length = 568
Score = 179 bits (449), Expect = 8e-44
Identities = 121/487 (24%), Positives = 234/487 (47%), Gaps = 27/487 (5%)
Query: 7 IIIIPLFGAFSMPIVSLLKG-KAKEIWATIISFATLIVGIEVFREVWSGGTIVYALGSET 65
++ + + G ++ I+ L K K ++ + I + A + + + V +GGT+ L
Sbjct: 7 LLAVAVAGLAALAILFLNKREKLRDAVSPIAAVAMFAIVVSMAPTVLAGGTVELRLFEVL 66
Query: 66 PFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKH--DTGLEKYYTLILILE 123
P I + D G + + + + +A +YS+ YM+H + +++
Sbjct: 67 P------GIDVALRADALGMVFATVSSLLWIVAAVYSIGYMRHLHEHAQTRFFACFATSL 120
Query: 124 LGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYM-FVGSLASSFVLL 182
+G A ++F +F E++S+ +Y LV + H+ EG KY+ ++ + S +L
Sbjct: 121 AAAVGGAFAANLFTLVIFYEVLSLVTYPLV-YHHEDEEGWRGSRKYLVYLMGASKSVLLA 179
Query: 183 GIALLYGQYGTLTM--GYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHP 240
+AL Y G+L G L + + T++ + G K+ P+H WL A
Sbjct: 180 ALALTYHIAGSLDFVRGGLLTGANASATLLTVVYFCYLFG--FAKAAVMPMHAWLPAAM- 236
Query: 241 AAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPA-INPATVGWIIIIFACITLIVGNAMA 299
AP+ +SA+L + + G++ + RV+F +F + + +G T+++ + A
Sbjct: 237 VAPTPVSALLHAVAVVKMGVFCVLRVIFHVFGVSTVGELGLGAATAYLVSFTILMASVYA 296
Query: 300 VVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFL 359
+ ++D+K LAYS+V Q+ YI+LG + + +A+ G I H HA K LF
Sbjct: 297 LTRDDLKARLAYSTVSQLSYIVLGAVL--------LSPLAMVGGIIHIAAHAFSKITLFF 348
Query: 360 VAGVVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSALF 419
AG + G RN+++++G+ + +P T AF + + +++G+PP GF SKW + E S
Sbjct: 349 CAGSIYCASGKRNISDMAGIGRRLPWTMGAFFVASLSMIGIPPTAGFVSKWYLAEGSVEA 408
Query: 420 NPLLGAIAIIGTAFCTAAY-VRVLFTFFGRPSEKVMKAKDPGATML-LPIFILVIAIIGM 477
+ ++ ++ AAY + V +T F K +A ++ +P+ I + M
Sbjct: 409 GQMAFLAVLLASSVLNAAYFLPVSYTAFFEAETKESRAPVREIPLVAIPLVATAILSVLM 468
Query: 478 GLFPWQI 484
G+FP+ +
Sbjct: 469 GIFPYYV 475
>pir||T13573 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Pharus
lappulaceus chloroplast (fragment)
>gi|726152|gb|AAA64198.1| (U21994) NADH dehydrogenase F
[Pharus lappulaceus]
Length = 694
Score = 178 bits (446), Expect = 2e-43
Identities = 143/467 (30%), Positives = 229/467 (48%), Gaps = 47/467 (10%)
Query: 3 WLPFIIIIPL-FGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIV 58
+LP +I+ + FG F +P + + IWA ++ ++ + + + +G I
Sbjct: 5 FLPLPVIMSIGFGLFLIPTATK---NLRRIWAFPSVLLLNIAMVFSVYLSIQQINGSFIY 61
Query: 59 YALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTL 118
L S T DF + + VD +IM+++IT + L ++YS +YM HD G +++
Sbjct: 62 QYLWSWTI--NNDFSLEFGYLVDPLTSIMLILITTIGILVLIYSDDYMSHDEGYLRFFVY 119
Query: 119 ILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASS 178
I MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 120 ISFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPLAASACQKAFVTNRVGDF 179
Query: 179 FVLLGIALLYGQYGTLTMGYL-------AVKMSENPTIVAKIALALFLGGLLFKSGAAPV 231
+LLGI + G+L L N ++ A LFLG + KS P+
Sbjct: 180 GLLLGILGFFWITGSLEFRDLFKIANNWIPNSGINSLLITLCAFLLFLGAVA-KSAQFPL 238
Query: 232 HMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACIT 291
H+WL DA P+ ISA++ + I+ +AR +F +F I+ + I + IT
Sbjct: 239 HVWLPDA-MEGPTPISALIHAATMV--AIFLLAR-LFPLF---ISLPLIMSFISLVGTIT 291
Query: 292 LIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHA 351
L +G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 292 LFLGATLALAQIDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHA 340
Query: 352 LMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPP 402
KALLFL +G ++H + ++N+ + GL K +P T FL G ++ G+PP
Sbjct: 341 YSKALLFLGSGSIIHSMEPLVGYSPDKSQNMVLMGGLRKYVPITRTTFLWGTLSLCGIPP 400
Query: 403 LNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
L F SK I +S L++P+ G IA TA TA Y+ RV L TF G
Sbjct: 401 LACFWSKDEILSNSWLYSPIFGIIASF-TAGLTAFYMFRVYLLTFDG 446
>sp|P77416|HYFD_ECOLI HYDROGENASE-4 COMPONENT D >gi|7466377|pir||C65024 hypothetical
protein b2484 - Escherichia coli (strain K-12)
>gi|1616953|gb|AAB88566.1| (M63654) Hyf D [Escherichia
coli] >gi|1788829|gb|AAC75537.1| (AE000335) hydrogenase
4 membrane subunit [Escherichia coli K12]
>gi|1805543|dbj|BAA16372.1| (D90877) NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 5 [Escherichia coli]
Length = 479
Score = 177 bits (444), Expect = 3e-43
Identities = 136/486 (27%), Positives = 236/486 (47%), Gaps = 43/486 (8%)
Query: 8 IIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREVWSGGTIVYALGSETPF 67
+++P GA +VS + W + + T + + + + + L
Sbjct: 9 LLLPFIGAL---VVSFSPQRRAAEWGVLFAALTTLCMLSLISAFYQADKVAVTLTLVNVG 65
Query: 68 GKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDT------GLEKYYTLILI 121
A F + I D+ +++ ++ F+ L +YS Y+ G +YY +L+
Sbjct: 66 DVALFGLVI----DRVSTLILFVVVFLGLLVTIYSTGYLTDKNREHPHNGTNRYYAFLLV 121
Query: 122 LELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVL 181
M G+ ++ + +F EI S+AL+++ + + + + +K + + + S +
Sbjct: 122 FIGAMAGLVLSSTLLGQLLFFEITGGCSWALISY-YQSDKAQRSALKALLITHIGSLGLY 180
Query: 182 LGIALLYGQYGTLTMGYLAVKMSENPTIVAKIALALFLGGLLF----KSGAAPVHMWLAD 237
L A L+ Q GT + ++ + A L GG+LF KS P+ WL D
Sbjct: 181 LAAATLFLQTGTFALSAMSELHGD--------ARYLVYGGILFAAWGKSAQLPMQAWLPD 232
Query: 238 AHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNA 297
A A P+ ISA L + G+Y AR + P +G + ++ A +T++ G
Sbjct: 233 AMEA-PTPISAYLHAASMVKVGVYIFARAIID---GGNIPHVIGGVGMVMALVTILYGFL 288
Query: 298 MAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALL 357
M + Q+DMKRLLA+S++ Q+G++ GL + I +GS+ +AL G+I + VNHA K+L
Sbjct: 289 MYLPQQDMKRLLAWSTITQLGWMFFGLSLSI--FGSR---LALEGSIAYIVNHAFAKSLF 343
Query: 358 FLVAGVVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES-- 415
FLVAG + + GTR L L G+ T+P F + A AI G+PP NGF SK+ ++ +
Sbjct: 344 FLVAGALSYSCGTRLLPRLRGVLHTLPLPGVGFCVAALAITGVPPFNGFFSKFPLFAAGF 403
Query: 416 --SALFNPLLGA--IAIIGTAFCTAAYVRVLFTFF-GRPSEKVMKAKD-PGATMLLPIFI 469
S + LL A + +I + A ++R G+PSE V A PG+ L+ I +
Sbjct: 404 ALSVEYWILLPAMILLMIESVASFAWFIRWFGRVVPGKPSEAVADAAPLPGSMRLVLIVL 463
Query: 470 LVIAII 475
+V+++I
Sbjct: 464 IVMSLI 469
>gb|AAF08127.1| (AF130165) NADH dehydrogenase subunit F [Araujia sericifera]
Length = 742
Score = 177 bits (444), Expect = 3e-43
Identities = 137/474 (28%), Positives = 232/474 (48%), Gaps = 55/474 (11%)
Query: 3 WL-PFIII-IPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREVWSGGTIVYA 60
WL PFI + +P+ + I K + +WA + L++ I + ++S +
Sbjct: 9 WLIPFIPLPVPILLGVGLLIFPTATKKFRRMWAF---HSVLLLSIVM---IFSMNLSIQQ 62
Query: 61 LGSETPFGKA-------DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLE 113
+ S + + DF + + +D +IM ++IT V L ++YS YM HD G
Sbjct: 63 INSNSSYQYVWSWIITNDFSLEFGYLIDPLTSIMSMLITTVGILVLIYSDNYMAHDQGYL 122
Query: 114 KYYTLILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVG 173
+++ + MLG+ + ++ Y+F E++ + SY L+ F + A K
Sbjct: 123 RFFAYMSFFSASMLGLVTSSNLVQIYIFWELVGMCSYLLIGFWFTRPQAANACQKAFVTN 182
Query: 174 SLASSFVLLGIALLYGQYGTL-------TMGYLAVKMSENPTIVAKIALALFLGGLLFKS 226
+ +LLGI Y G+ + L N V A+ LF G + KS
Sbjct: 183 RVGDFGLLLGILGFYWITGSFEFEDLFEIVNDLICNNQVNFLFVTLCAVLLFAGAVA-KS 241
Query: 227 GAAPVHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARV--VFSIFWPAINPATVGWII 284
P+H+WL DA P+ ISA++ + GI+ +AR+ +F + P +N +I
Sbjct: 242 AQFPLHVWLPDA-MEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPPIMN------LI 294
Query: 285 IIFACITLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAI 344
+ A IT+++G +A+ Q+D+KR LAY ++ Q+GY++L LG+G + A+
Sbjct: 295 SLIAIITVLLGATLALAQKDIKRGLAYPTMSQLGYMMLALGMG-----------SYQSAL 343
Query: 345 YHTVNHALMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAA 395
+H + HA +ALLFL +G V+H + ++N+ + GL K +P T AFL+G
Sbjct: 344 FHLITHAYSEALLFLGSGSVIHSMEGIVGYSPYKSQNMILMGGLRKHLPITKNAFLLGTL 403
Query: 396 AIVGMPPLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
++ G+PPL F SK I + L++ + IA + TA TA Y+ R+ L TF G
Sbjct: 404 SLCGIPPLACFWSKDEILNDTWLYSTIFAIIAWV-TAGLTAFYMFRIYLLTFAG 456
>pir||G64678 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 [similarity] -
Helicobacter pylori (strain 26695)
>gi|2314436|gb|AAD08315.1| (AE000631) NADH-ubiquinone
oxidoreductase, NQO12 subunit (NQO12) [Helicobacter
pylori 26695]
Length = 612
Score = 176 bits (443), Expect = 4e-43
Identities = 127/486 (26%), Positives = 236/486 (48%), Gaps = 32/486 (6%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVG----IEVFREVWSGGTIVY 59
L ++ +PL GA L KAK + + + ++V + +F + W +
Sbjct: 7 LSVVLFLPLIGAI---YAGLFGAKAKALHVGVFNSLCVLVSFIGAVVLFIQAWHHQSYEK 63
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
L G +F + +D A+M++++T VSFL +YS+ YM+HD G +Y++ +
Sbjct: 64 YLFDWIVVG--NFKVGFSLMLDNINAVMIVVVTLVSFLVHVYSIGYMEHDAGFNRYFSYL 121
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
ML + ++ + ++ E + + SY L+ F + A I+ + +
Sbjct: 122 SGFVFSMLVLVLSDNFLGLFIGWEGVGLCSYLLIGFWYHKTSANNASIEAFVMNRITDLG 181
Query: 180 VLLGIALLYGQYGTLTMGYLAVKMSENP-TIVAKIALALFLGGLLFKSGAAPVHMWLADA 238
+L+GI L++ +GTL + ++ +++ I++ LF+G + KS P+H WLA+A
Sbjct: 182 MLMGIILIFWNFGTLQYKEVFSMLNNTDYSMLFYISVFLFIGA-MGKSAQFPMHTWLANA 240
Query: 239 HPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAM 298
P+ +SA++ + G+Y + R + + A+ VG+ I + G +M
Sbjct: 241 -MEGPTPVSALIHAATMVTAGVYLVIRA--NPLYSAV--FEVGYFIACLGAFVALFGASM 295
Query: 299 AVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLF 358
A+V +D+KR++AYS++ Q+GY+ + G+G A A A++H HA K+LLF
Sbjct: 296 ALVNKDLKRIVAYSTLSQLGYMFVAAGLG-----------AYAIALFHLFTHAFFKSLLF 344
Query: 359 LVAGVVLHEL-GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYE-SS 416
L +G V+H + ++ ++ L K M T +IG+ A+ G+ P G+ SK I E +
Sbjct: 345 LGSGNVMHAMEDNLDITKMGALYKPMRITAVFMIIGSVALCGIYPFAGYFSKDKILEVAF 404
Query: 417 ALFNPLLGAIAIIGTAFCTAAYV--RVLFTFFGRPSEKVMKAKDPGATMLLPIFILVIAI 474
+ + +L +IG F TA Y ++ FF ++ + MLL + L +
Sbjct: 405 GMHHHILWFALLIGAIF-TAFYSFRLIMLVFFAPKQHEINHPHEAQNFMLLSMLPLGVLA 463
Query: 475 IGMGLF 480
+ G F
Sbjct: 464 VIAGFF 469
>emb|CAB65913.1| (AJ236266) NADH dehydrogenase subunit F [Nyssa ogeche]
Length = 717
Score = 176 bits (443), Expect = 4e-43
Identities = 133/468 (28%), Positives = 224/468 (47%), Gaps = 45/468 (9%)
Query: 4 LPFIII-IPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVY 59
+PF+ + +P+ + + K + +WA ++ +I I++ + + +I
Sbjct: 10 IPFVPLPVPMLIGVGLLLFPTATKKLRRVWAFHSVLLLSIVMIFSIDLSIQQINSSSIYQ 69
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
+ S DF + + + +D +IM ++IT V + ++YS YM HD G +++ +
Sbjct: 70 YVWSWVI--NNDFSLELGYLIDPLTSIMSILITTVGIMVLIYSDNYMSHDQGYLRFFAYM 127
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
MLG+ + ++ Y+F E + + SY L+ F A K +
Sbjct: 128 SFFSTSMLGLVTSSNLIQIYIFWEXVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFG 187
Query: 180 VLLGIALLYGQYGTL-------TMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVH 232
+LLGI Y G+ L K N V A+ LF G + KS P+H
Sbjct: 188 LLLGILGFYWITGSFEFRDLFEIFNNLISKNEVNLFFVTLCAVLLFAGAVA-KSAQFPLH 246
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARV--VFSIFWPAINPATVGWIIIIFACI 290
+WL DA P+ ISA++ + GI+ +AR+ +F + +N +I + I
Sbjct: 247 VWLPDA-MEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMN------LISLIGII 299
Query: 291 TLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNH 350
T+++G +A+ Q+D+KR LAYS++ Q+GY+ LG+G + A++H + H
Sbjct: 300 TVLLGATLALAQKDIKRSLAYSTMSQLGYMKSALGMG-----------SYRTALFHLITH 348
Query: 351 ALMKALLFLVAGVVLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMP 401
A KALLFL +G V+H + T +N+ + GL K +P T AFL+G ++ G+P
Sbjct: 349 AYSKALLFLGSGSVIHSMETIVGYSPNKSQNMVLMGGLTKHVPITKTAFLVGTLSLCGIP 408
Query: 402 PLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RVLFTFFGR 448
PL F SK I S L++P+ IA TA TA Y+ R+ F R
Sbjct: 409 PLACFWSKDEILNDSWLYSPIFAIIA-CSTAGLTAFYMFRIYLLTFER 455
>emb|CAB59312.1| (AJ236295) NADH dehydrogenase subunit F [Erithalis fruticosa]
Length = 734
Score = 176 bits (442), Expect = 5e-43
Identities = 137/469 (29%), Positives = 226/469 (47%), Gaps = 42/469 (8%)
Query: 4 LPFI-IIIPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEV-FREVWSGGTIV 58
+PFI + IP+ + + + IW+ ++ LI I + +++ S T
Sbjct: 11 IPFIPLSIPILIGIGLLLFPTATKNLRRIWSFQSVLLLSIVLIFSINLSIQQINSNSTYQ 70
Query: 59 YALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTL 118
Y DF + + +D +IM ++IT V + ++YS YM HD +++
Sbjct: 71 YVWSWII---NNDFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMTHDQAYLRFFAY 127
Query: 119 ILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASS 178
+ MLG+ + ++ Y+F E++ + SY L+ F A K +
Sbjct: 128 MSFFSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPLAANACQKAFVTNRIGDF 187
Query: 179 FVLLGIALLYGQYGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVH 232
+LLGI Y G+ L + +E + + AL G + KS P+H
Sbjct: 188 CLLLGILGFYWITGSFEFRDLFEIFNNLIYNNEVNFLFVTLCAALLFAGAIAKSAQFPLH 247
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ + GI+ +AR++ +F I P + +I +I IT+
Sbjct: 248 VWLPDA-MEGPTPISALIHAATMVAAGIFLVARLL-PLF--IIIPHIMNFISLI-GVITV 302
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
++G +A+ Q+D+KR LAYS++ Q+GY++L LG+G + A++H + HA
Sbjct: 303 LLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMG-----------SYRSALFHLITHAY 351
Query: 353 MKALLFLVAGVVLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL AG V+H + T +N+ + GL K +P T FL+G ++ G+PPL
Sbjct: 352 SKALLFLGAGSVIHSMETIVGYSPHKSQNMALMGGLTKHVPITKNTFLLGTLSLCGIPPL 411
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFGRPS 450
F SK I S L++ + IA TA TA Y+ R+ L TF G S
Sbjct: 412 ACFWSKDEILNDSWLYSTIFAIIA-WATAGLTAFYMFRIYLLTFEGHLS 459
>gb|AAF08182.1| (AF130226) NADH dehydrogenase subunit F [Quercus rubra]
Length = 742
Score = 176 bits (442), Expect = 5e-43
Identities = 134/469 (28%), Positives = 224/469 (47%), Gaps = 46/469 (9%)
Query: 3 WLPFI-IIIPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIV 58
++PFI +++P+ + + + +WA ++ +I + + + +I
Sbjct: 1 FIPFIPVLVPMLLGVGLLLFPTATRNLRRMWAFPSVLLLSIVMIFSSNLSVQQINNSSIY 60
Query: 59 YALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTL 118
+ S T DF + +D +IM ++IT V + ++YS YM HD G +++
Sbjct: 61 QYVWSWTI--NNDFSLEFGQLIDSLTSIMSILITTVGIMVLIYSDNYMSHDQGYLRFFAY 118
Query: 119 ILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASS 178
+ MLG+ + ++ Y+F E++ + SY L+ F A K +
Sbjct: 119 MSFFNTSMLGLVTSSNLIQIYIFWELVGVCSYLLIGFWFTRPIAATACQKAFVTNRVGDF 178
Query: 179 FVLLGIALLYGQYGTL-------TMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPV 231
+LLGI Y G+ L N V AL LF G + KS P+
Sbjct: 179 GLLLGILGFYWITGSFEFRDLFEIFNNLIYNNEVNFLFVTLCALLLF-SGAIAKSAQFPL 237
Query: 232 HMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARV--VFSIFWPAINPATVGWIIIIFAC 289
H+WL DA P+ ISA++ + GI+ +AR+ +F + +N +I +
Sbjct: 238 HVWLPDA-MEGPTPISALIHQATMVAEGIFLVARLLPLFIVIPYIMN------LISLIGI 290
Query: 290 ITLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVN 349
ITL++G +A+ Q+D+KR LAYS++ Q+GY++L LG+G + A++H +
Sbjct: 291 ITLLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMG-----------SYRSALFHLIT 339
Query: 350 HALMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGM 400
HA KALLFL +G ++H + ++N+ + GL K +P T AFL+G ++ G+
Sbjct: 340 HAYSKALLFLGSGSIIHSMEAVVGYSPDKSQNMVLMGGLTKHVPITKTAFLLGTLSLCGI 399
Query: 401 PPLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYVR--VLFTFFG 447
PPL F SK I S L++P+ IA TA TA Y+ L TF G
Sbjct: 400 PPLACFWSKDEILNDSWLYSPIFAIIA-WSTAGLTAFYMSRIYLLTFEG 447
>pir||C83514 probable NADH dehydrogenase PA1054 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946968|gb|AAG04443.1|AE004537_8 (AE004537) probable
NADH dehydrogenase [Pseudomonas aeruginosa]
Length = 933
Score = 176 bits (442), Expect = 5e-43
Identities = 140/497 (28%), Positives = 241/497 (48%), Gaps = 46/497 (9%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFRE---VWSGGTIVYA 60
L II +P GA +P+++ G+ + A A LI I + + V++G T+ +
Sbjct: 3 LALIIALPFMGAL-LPLLAERGGRT--LCAASAGVAPLIGLILLLGQRGTVFAGQTLTAS 59
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLIL 120
G I + +D G + L+I + L ILY+ Y+ + +++ +L
Sbjct: 60 YSWLPEIG-----INLSLRLDGLGFLFALLILGIGLLVILYARYYLSEQEPMGRFFAFLL 114
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAF---RHDTWEGIEAGIKYMFVGSLAS 177
+ MLG+ + ++ +F E+ S++S+ L+ F R D +G + G LA
Sbjct: 115 LFMGSMLGVVLAENLLLMMLFWELTSLSSFLLIGFWGSRSDARKGARMALTVTGGGGLA- 173
Query: 178 SFVLLGIALLYGQYGTLTMG-YLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLA 236
+L G+ LL G+ + LA + + L L L G+ KS P H WL
Sbjct: 174 --LLAGVLLLGHIAGSFELTEVLAAGELIRAHALYPLVLILILLGVFTKSAQFPFHFWLP 231
Query: 237 DAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGW---IIIIFACITLI 293
A AAP+ +SA L + G++ +AR+ +PA+ A W ++ + +TL+
Sbjct: 232 HAM-AAPTPVSAYLHSATMVKAGVFLLARL-----YPAL--AGTEWFFYLVSLSGLVTLL 283
Query: 294 VGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALM 353
+G MA+ Q D+K LLAYS++ +G I L G+ S + +A A++H +NHA
Sbjct: 284 LGAGMALFQHDLKGLLAYSTISHLGLITLLFGLD-----SPLSNVA---AVFHIINHATF 335
Query: 354 KALLFLVAGVVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIY 413
KA LF+ AG++ HE G+R++ ++G+ K +P T ++ + A+ G+P LNGF SK + +
Sbjct: 336 KASLFMAAGIIDHETGSRDMRLINGMWKYLPHTAVLAIVASLAMAGVPLLNGFLSKEMFF 395
Query: 414 ESS------ALFNPLLGAIAIIGTAFCTAAYVRVLFTFF--GRPSE-KVMKAKDPGATML 464
+ FN L+ A+A + F A +R + F G P+ +P M
Sbjct: 396 GETLSQNLLGSFNWLVPAVATLAGVFSVAYSLRFIHDVFFNGEPARLPKFPPHEPPRYMK 455
Query: 465 LPIFILVIAIIGMGLFP 481
+P+ ILV + +G+ P
Sbjct: 456 VPVEILVFLCLLVGMLP 472
>emb|CAB59319.1| (AJ236298) NADH dehydrogenase subunit F [Hillia triflora]
Length = 731
Score = 175 bits (440), Expect = 9e-43
Identities = 117/396 (29%), Positives = 195/396 (48%), Gaps = 32/396 (8%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V + ++YS YM HD +++ + MLG+
Sbjct: 77 DFSLEFGYLIDPLSSIMSILITTVGIMVLIYSDNYMAHDQAYLRFFAYMSFFSTSMLGLV 136
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 137 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPLSANACQKAFVTNRIGDFCLLLGILGFYWI 196
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ L + +E + + L G + KS P+H+WL DA P+
Sbjct: 197 TGSFEFRDLFEIFNNLIYNNEVNFLFVTLCAVLLFAGAVAKSAQFPLHVWLPDA-MEGPT 255
Query: 245 SISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQED 304
ISA++ + GI+ +AR++ +F + P + +I +I IT+ +G +A+ Q+D
Sbjct: 256 PISALIHAATMVAAGIFLVARLL-PLF--IVIPYIMNFISLI-GIITVFLGATLALAQKD 311
Query: 305 MKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVV 364
+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +G V
Sbjct: 312 IKRGLAYSTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSKALLFLGSGSV 360
Query: 365 LHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES 415
+H + T +N+ + GL K +P T FL+G ++ G+PPL F SK I
Sbjct: 361 IHSMETIVGYSPHKSQNMALMGGLTKHVPITKNTFLLGTLSLCGIPPLACFWSKDEILND 420
Query: 416 SALFNPLLGAIAIIGTAFCTAAYVRV-LFTFFGRPS 450
S+L++P+ IA + R+ L TF G S
Sbjct: 421 SSLYSPIFAIIAWATAGLTAFSIFRIYLLTFEGHLS 456
>gb|AAG26147.1| (AF123799) NADH dehydrogenase subunit F [Acorus calamus]
Length = 429
Score = 175 bits (440), Expect = 9e-43
Identities = 122/444 (27%), Positives = 215/444 (47%), Gaps = 40/444 (9%)
Query: 3 WLPFIIIIPLFGAFSMPIVSLLKGKAKEIWA----TIISFATLIVGIEVFREVWSGGTIV 58
+LPF + I + + +V + IWA ++S A + +++ G+ +
Sbjct: 3 FLPFPVTISI--GLGLLLVPTATKNLRRIWAFFSVLLLSIAMVFSADLAIQQI--NGSFI 58
Query: 59 YALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTL 118
Y F + + +D +IM+++IT V + ++YS YM HD G +++
Sbjct: 59 YQYSWSWTINNT-FSLEFGYLIDPLTSIMLILITTVGIMVLIYSDNYMSHDQGYLRFFAY 117
Query: 119 ILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASS 178
+ MLG+ + ++ Y+F E++ + SY L+ F A K +
Sbjct: 118 MSFFNTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPTAANACQKAFVTNRVGDF 177
Query: 179 FVLLGIALLYGQYGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVH 232
+LLGI LY G+ L + +E ++ A + +L G + KS P+H
Sbjct: 178 GLLLGILGLYWITGSFEFRDLFEILKNLIHNNEVNSLFAALCASLLFVGAVAKSAQFPLH 237
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ + GI+ +AR++ +F + P + +I +I IT+
Sbjct: 238 VWLPDA-MEGPTPISALIHAATMVAAGIFLVARLL-PLF--TVIPYIMNFISLI-GIITV 292
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
++G +A+ Q D+KR LAYS++ Q+GYI+L GIG + A++H + HA
Sbjct: 293 LLGATLALAQRDIKRSLAYSTMSQLGYIMLAPGIG-----------SYRAALFHLITHAY 341
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G ++H + ++N+ + GL + +P T F +G ++ GMPPL
Sbjct: 342 SKALLFLGSGSIIHSMEPIVGYSPEKSQNMILMGGLRRYVPITKTTFFLGTLSLCGMPPL 401
Query: 404 NGFASKWLIYESSALFNPLLGAIA 427
F SK I + L++P+ IA
Sbjct: 402 ACFWSKDEILNDTWLYSPIFAIIA 425
>pir||T12625 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Anomochloa
marantoidea chloroplast (fragment)
>gi|726148|gb|AAA64196.1| (U21992) NADH dehydrogenase F
[Anomochloa marantoidea]
Length = 698
Score = 175 bits (439), Expect = 1e-42
Identities = 141/466 (30%), Positives = 230/466 (49%), Gaps = 44/466 (9%)
Query: 3 WLPFIIIIPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVY 59
+LP +I+ + F + ++ + IWA ++ ++ + + + +G I
Sbjct: 5 FLPLPVIMSI--GFGLLLIPTATKSLRRIWAFPSVLLLSLAMVFSVHLSIQQINGSFIYQ 62
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
L S T DF + + +D +IM+++IT V L ++YS +YM HD G +++ I
Sbjct: 63 YLWSWTI--NNDFSLEFGYLIDPLTSIMLILITTVGILVLIYSDDYMSHDEGYLRFFVYI 120
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 121 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 180
Query: 180 VLLGIALLYGQYGTLTMGYLA------VKMSE-NPTIVAKIALALFLGGLLFKSGAAPVH 232
+LLGI + G+L L ++ +E N + A LFLG + KS P+H
Sbjct: 181 LLLGILGFFWITGSLEFRDLFQIANNWIQNNEINSLLTTLYAFFLFLGAVA-KSAQFPLH 239
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ + I+ IAR++ +F P + +I ++ ITL
Sbjct: 240 VWLPDA-MEGPTPISALIHAATM-AHWIFLIARLL-PLFISL--PLLMNFISLV-GTITL 293
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 294 FLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAY 342
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G ++H + ++N+ + GL K +P T FL G ++ G+PPL
Sbjct: 343 SKALLFLGSGSIIHSMEPLVGYSPDKSQNMALMGGLRKYVPITRTTFLCGTLSLCGIPPL 402
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I +S L++P G IA TA TA Y+ RV L TF G
Sbjct: 403 ACFWSKDEILSNSWLYSPTFGIIASF-TAGLTAFYMFRVYLLTFDG 447
>emb|CAB51628.2| (AJ245399) putative NADH-ubiquinone oxidoreductase subunit
[Sinorhizobium meliloti]
Length = 479
Score = 175 bits (439), Expect = 1e-42
Identities = 121/409 (29%), Positives = 206/409 (49%), Gaps = 25/409 (6%)
Query: 81 DKFGAIMVLIITFVSFLAILYSLEYMKHD-TGLEKYYTLILILELGMLGIAITGDIFNFY 139
D+F L+ + L S +Y + + G +YY L+L +GM+ +A D+ + Y
Sbjct: 74 DRFAVFFKLVFYLATILTFFLSRKYAEIEGIGRSEYYVLLLFALVGMMIMASAIDLLSIY 133
Query: 140 VFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQYGTLTMGYL 199
V LE+M + +Y L F EA +KY+ +G+++++ L G++L+YG GT + +
Sbjct: 134 VGLELMVLCTYVLTGFLRKERRSNEAALKYVILGAVSTAIFLYGVSLIYGLTGTTQLDRM 193
Query: 200 AVKMSENPTIVAKIALALFL-GGLLFKSGAAPVHMWLADAHPAAPSSISAMLSGLVIKIG 258
A +S P A + +F+ GL+FK GA P HMW+ D + AP++I+A +S + K
Sbjct: 194 AEAVSGGPLDPALLLAVVFIVAGLVFKIGAVPFHMWVPDVYEGAPTTITAFMS-VAPKAA 252
Query: 259 GIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQEDMKRLLAYSSVGQIG 318
G I RV + P + + I+ A T+ +G+ +A+VQ++ KRLLAYSS+ G
Sbjct: 253 GFAVILRVFLN---PLVEASNAWIIVAAIAVATMALGSFVALVQDNFKRLLAYSSIAHAG 309
Query: 319 YILLGLGIGIVAYGSK-VGEIALAGAIYHTVNHALMKALLFLVAGVVLHELGTRNLNELS 377
+ + G+VA G + + L IY +N + A++ + G E+ + + +
Sbjct: 310 FAI----FGVVAGGQDGIASVMLYLLIYTFMNLGIFGAVIMMRNGDFSGEV----IEDYA 361
Query: 378 GLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAA 437
G AK P L+ ++ G+PP GF +K+ Y AL A+A+I +
Sbjct: 362 GFAKFHPGLALLMLLYLFSLAGIPPTAGFFAKF--YVLVALVERGFVALAVIAVLLSVVS 419
Query: 438 ---YVRVLFTFFGRPSEKVMKAKDPGATMLLPIFILVIA--IIGMGLFP 481
Y+R++ + R E +A +P T L+ + A IG+GLFP
Sbjct: 420 AYFYIRIVMVIYMREPE---RAFEPALTPLVSATLAFTAAGTIGIGLFP 465
>emb|CAB59299.1| (AJ236283) NADH dehydrogenase subunit F [Alseis lugonis]
Length = 724
Score = 175 bits (438), Expect = 1e-42
Identities = 123/398 (30%), Positives = 198/398 (48%), Gaps = 36/398 (9%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V + ++YS YM HD +++ + MLG+
Sbjct: 80 DFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMAHDQAYLRFFAYMSFFTTSMLGLV 139
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 140 TSSNLIQIYIFWELVGVCSYLLIGFWFTRPLAANACQKAFVTNRIGDFGLLLGILGFYWI 199
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ L V +E + + +L G L KS P+H+WL DA P+
Sbjct: 200 TGSFEFRDLFEIFNNLVYNNEVNFLFVTLCASLVFSGALAKSAQFPLHVWLPDA-MEGPT 258
Query: 245 SISAMLSGLVIKIGGIYAIARVV-FSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQE 303
ISA++ + GI+ +AR++ I P+I + I + IT+++G +A+ Q+
Sbjct: 259 PISALIHAATMVAAGIFLVARLLPLFIIIPSIM-----YFISLIGIITVLLGATLALAQK 313
Query: 304 DMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGV 363
D+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +G
Sbjct: 314 DIKRGLAYSTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSKALLFLGSGS 362
Query: 364 VLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYE 414
V+H + T +N+ + GL K +P T FL+G ++ G+PPL F SK I
Sbjct: 363 VIHSMETIVGYSPYKSQNMVLMGGLTKHVPITKNTFLLGTLSLCGIPPLACFWSKDEILN 422
Query: 415 SSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFGRPS 450
S L++ + IA TA TA Y+ R+ L TF G S
Sbjct: 423 DSWLYSTIFAIIA-WATAGLTAFYMFRIYLLTFEGHLS 459
>pir||T13778 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Verbascum
thapsus chloroplast (fragment) >gi|703454|gb|AAA84710.1|
(L36417) NADH dehydrogenase subunit [Verbascum thapsus]
Length = 699
Score = 174 bits (437), Expect = 2e-42
Identities = 124/415 (29%), Positives = 200/415 (47%), Gaps = 36/415 (8%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM+++IT V + ++YS YM HD G +++ + M G+
Sbjct: 72 DFSLEFGYLIDPLTSIMLMLITTVGIMVLIYSDNYMAHDQGYLRFFAYMSFFTTSMFGLV 131
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K LGI Y
Sbjct: 132 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPPAANACQKAXXXXXXXXXXXXLGILGFYWI 191
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ L + +E + + AL G + KS P+H+WL DA P+
Sbjct: 192 TGSFEFRDLFEIFNNLIYNNEVNSPFVSLCAALLFAGAVAKSAQFPLHIWLPDA-MEGPT 250
Query: 245 SISAMLSGLVIKIGGIYAIARVV-FSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQE 303
ISA++ + GI+ +AR++ I P I +I + IT+++G +A+ Q
Sbjct: 251 PISALIXAATMVAAGIFLVARLLPLFILIPYIMN-----LISLIGIITVLLGATLALAQT 305
Query: 304 DMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGV 363
D+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +G
Sbjct: 306 DIKRGLAYSTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSKALLFLGSGS 354
Query: 364 VLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYE 414
V+H + T +N+ + GL K +P T +FL+G ++ G+PPL F SK I
Sbjct: 355 VIHSMETVVGYSPEKSQNMVLMGGLTKYVPITKISFLLGTLSLCGIPPLACFWSKDEILN 414
Query: 415 SSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFGRPSEKVMKAKDPGATMLLPI 467
+ L++P+ IA TA TA Y+ R+ L TF G + K T L I
Sbjct: 415 DTWLYSPIFAIIA-WATAGLTAFYMFRIYLLTFEGHLNVNFQKYSGSQNTPLYSI 468
>sp|P77437|HYFF_ECOLI HYDROGENASE-4 COMPONENT F >gi|7466379|pir||E65024 hypothetical
protein b2486 - Escherichia coli (strain K-12)
>gi|1616955|gb|AAB88568.1| (M63654) Hyf F [Escherichia
coli] >gi|1788831|gb|AAC75539.1| (AE000335) hydrogenase
4 membrane subunit [Escherichia coli K12]
>gi|1805545|dbj|BAA16374.1| (D90877) FORMATE
HYDROGENLYASE SUBUNIT 3 (FHL SUBUNIT 3) (HYDROGENASE 3,
SUBUNIT 3). [Escherichia coli]
Length = 526
Score = 174 bits (437), Expect = 2e-42
Identities = 123/417 (29%), Positives = 204/417 (48%), Gaps = 30/417 (7%)
Query: 80 VDKFGAIMVLIITFVSFLAILYSLEYMKHDTG--------LEKYYTLILILELGMLGIAI 131
+D G + + I+ + FL +YS+ YM+H+ L YY + ML +
Sbjct: 72 IDGLGGLFLAILGVIGFLTGIYSIGYMRHEVAHGELSPVTLCDYYGFFHLFLFTMLLVVT 131
Query: 132 TGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQY 191
+ ++ + +E +++S LV + +EA KY+ + ++ +F L G L+Y
Sbjct: 132 SNNLIVMWAAIEATTLSSAFLVGI-YGQRSSLEAAWKYIIICTVGVAFGLFGTVLVYANA 190
Query: 192 GT-LTMGYLAVKMSE--------NPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAA 242
+ + +A+ SE +PT++ +A L G K+G P+H WL DAH A
Sbjct: 191 ASVMPQAEMAIFWSEVLKQSSLLDPTLML-LAFVFLLIGFGTKTGLFPMHAWLPDAHSEA 249
Query: 243 PSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQ 302
PS +SA+LS +++ + I + I AI +++IF +++ V +VQ
Sbjct: 250 PSPVSALLSAVLLNCALLVLIRYYI--IICQAIGSDFPNRLLLIFGMLSVAVAAFFILVQ 307
Query: 303 EDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAG 362
D+KRLLAYSSV +G + + LGIG G + + A+ H +NH+L K LLF +G
Sbjct: 308 RDIKRLLAYSSVENMGLVAVELGIG--------GPLGIFAALLHILNHSLAKTLLFCGSG 359
Query: 363 VVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSALFNPL 422
VL + GTR+LN + G+ K MP T F GA A+ GMPP N F S+++ + N L
Sbjct: 360 NVLLKYGTRDLNVVCGMLKIMPFTAVLFGGGALALAGMPPFNIFLSEFMTITAGLARNHL 419
Query: 423 L-GAIAIIGTAFCTAAYVRVLFTFFGRPSEKVMKAKDPGATMLLPIFILVIAIIGMG 478
L + ++ A VR+ + + D G P+ IL++ ++ MG
Sbjct: 420 LIIVLLLLLLTLVLAGLVRMAARVLMAKPPQAVNRGDLGWLTTSPMVILLVMMLAMG 476
>pir||T13370 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Joinvillea
ascendens chloroplast (fragment)
>gi|755839|gb|AAA64778.1| (U21973) NADH dehydrogenase F
[Joinvillea ascendens]
Length = 697
Score = 174 bits (436), Expect = 3e-42
Identities = 137/466 (29%), Positives = 228/466 (48%), Gaps = 44/466 (9%)
Query: 3 WLPFIIIIPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVY 59
+LP + I + F + ++ + IWA ++ ++ + + +G I
Sbjct: 5 FLPLPVTISI--GFGLLLIPTATKNLRRIWAFPSVLLLSIAMVFSANLSIQQINGNFIYQ 62
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
L S T DF + + +D +IM ++IT V + ++YS +YM HD G +++ I
Sbjct: 63 YLWSWTI--NNDFSLEFGYLIDPLTSIMSILITTVGTMVLIYSDDYMSHDEGYLRFFVYI 120
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
MLG+ + ++ Y F E++ + SY L+ F A K +
Sbjct: 121 SFFNTSMLGLVTSSNLIQIYFFWELVGMCSYLLIGFWFTRPIAASACQKAFVTNRVGDFG 180
Query: 180 VLLGIALLYGQYGTLTMGYLAVKMSEN-------PTIVAKIALALFLGGLLFKSGAAPVH 232
+LLGI + G+L L K++ N +++ + L G + KS P+H
Sbjct: 181 LLLGILGFFWITGSLEFRDL-FKIANNWIPNNGINSLLTTLCAFLLFVGAVAKSAQFPLH 239
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
+WL DA P+ ISA++ + + GI+ +AR++ +F I+ + I + ITL
Sbjct: 240 VWLPDA-MEGPTPISALIH-VAMVAAGIFLVARLL-PLF---ISIPLIMSFISLVGTITL 293
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+G +A+ Q D+KR LAYS++ Q+GY++L LGIG + A++H + HA
Sbjct: 294 FLGATLALAQRDIKRSLAYSTMSQLGYMMLALGIG-----------SYQAALFHLITHAY 342
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G ++H + ++N+ + GL K +P T FL+G ++ G+PPL
Sbjct: 343 SKALLFLGSGSIIHSMESVVGYSPDKSQNMVLMGGLTKYIPITRTTFLLGTLSLCGIPPL 402
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
F SK I +S L++P L IA TA TA Y+ RV L TF G
Sbjct: 403 ACFWSKDEILSNSWLYSPTLAIIACF-TAGLTAFYMFRVYLLTFDG 447
>pir||T13685 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Scaevola
frutescens chloroplast (fragment)
>gi|847670|gb|AAC37462.1| (L39385) NADH dehydrogenase
[Scaevola frutescens]
Length = 734
Score = 174 bits (436), Expect = 3e-42
Identities = 135/480 (28%), Positives = 231/480 (48%), Gaps = 65/480 (13%)
Query: 2 TWL-PFIII-IPLFGAFSMPIVSLLKGKAKEIWA-------TIISFATLIVGIE------ 46
TW+ PF+ + +P+ A + + + +WA +I+ ++ + I+
Sbjct: 8 TWIIPFLPLPVPMLIALGLILFPKATKSFRRMWAFQSILLLSIVMLFSMNLSIQQINSSS 67
Query: 47 VFREVWSGGTIVYALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYM 106
V++ VWS + + + DF + + +D +IM ++IT V + ++YS +YM
Sbjct: 68 VYQYVWS-----WIINN-------DFSLEFGYLIDSLTSIMSILITTVGIMVLIYSDKYM 115
Query: 107 KHDTGLEKYYTLILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAG 166
HD G +++ + MLG+ + ++ Y+F E++ + SY L+ F A
Sbjct: 116 SHDHGYLRFFAYMTFFSTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPVAANAC 175
Query: 167 IKYMFVGSLASSFVLLGIALLYGQYGTLTMGYL------AVKMSENPTIVAKIALALFLG 220
K + +LLGI Y G+ L V +E + + L
Sbjct: 176 QKAFVTNRVGDFGLLLGILGFYWITGSFEFRDLFKIFNNLVSTNEVNFLFVTLCAILLFA 235
Query: 221 GLLFKSGAAPVHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARV--VFSIFWPAINPA 278
G + KS P+H+WL DA P+ ISA++ + GI+ +AR+ +F + +N
Sbjct: 236 GPIAKSAQFPLHVWLPDA-MEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPHIMN-- 292
Query: 279 TVGWIIIIFACITLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEI 338
+I + IT+ G +A+ Q+D+KR LAYS++ Q+GYI+L LG+G
Sbjct: 293 ----LISLIGTITVFFGATLALAQKDIKRGLAYSTMSQLGYIMLALGMG----------- 337
Query: 339 ALAGAIYHTVNHALMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFA 389
+ A++H + HA KALLFL +G ++H + ++N+ + GL K +P T A
Sbjct: 338 SYRSALFHLITHAYSKALLFLGSGSLIHSMEPIVGYSPKKSQNMVFMGGLKKYIPMTQTA 397
Query: 390 FLIGAAAIVGMPPLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFG 447
FL+ ++ G+PPL F SK I S L++P+ AI TA TA Y+ R+ L TF G
Sbjct: 398 FLLATLSLCGIPPLACFWSKDEILNDSWLYSPIF-AIIPWSTAGFTAFYMCRIYLLTFEG 456
>emb|CAB52783.1| (AJ243656) transmembrane protein 53.3 kDa (conserved)
[Methanobacterium thermoautotrophicum]
Length = 498
Score = 174 bits (436), Expect = 3e-42
Identities = 125/504 (24%), Positives = 245/504 (47%), Gaps = 38/504 (7%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREVWSGGTIVYALGS 63
+P ++++P+ A +++LL G+ + + A ++ A L+ I + + YA S
Sbjct: 5 IPVMVVLPILCAL---LLNLLHGRDRTVKALAVAVAILLPIIPLLAGYGAHYFGGYAPLS 61
Query: 64 ETPFGKADFPIR------------IVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTG 111
E P + P I + I +LI++ V+FLA+L SL ++ +G
Sbjct: 62 ENPAIASGLPDSVKSSYLYSFHPGITYLFGSAQRIFLLILSIVAFLAVLTSLNEVRKPSG 121
Query: 112 LEKYYTLILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMF 171
+ Y L+ + + I +T DIFN YVF EI ++A ++ E +KYM
Sbjct: 122 V--YAFLMFMGTAAVTAIVLTDDIFNLYVFFEIAALAQVGVILCS-GVERSYETALKYMM 178
Query: 172 VGSLASSFVLLGIALLYGQYGTLTMGYLAVKMSE---NP-TIVAKIALALFLGGLLFKSG 227
+G +A+ +LLG+A+L G + + + M NP + + +A +L L G L+ +G
Sbjct: 179 IGGVAAPMLLLGVAILLALTGNVNISDIVFSMRSGLVNPGSPLFLLASSLILFGWLYGTG 238
Query: 228 AAPVHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIF 287
P H + + A +A+L + A+A V+ +F+ + V W ++ F
Sbjct: 239 LPPFHTIKSAVYSKALPHGAALLQAF--SVFTFTALALVILRMFY---HMPLVRWAMVFF 293
Query: 288 ACITLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHT 347
+ +++G +MA++Q D++R++ + +VG++GYI +GLG+G A +++ ++
Sbjct: 294 SLAGMVLGISMALMQTDLRRMIGFLAVGELGYIGIGLGLGTAA--------SISAGLFQA 345
Query: 348 VNHALMKALLFLVAGVVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFA 407
VN AL+ A +FL G + + G + + GL P ++ + G+PP N F
Sbjct: 346 VNEALITACIFLGFGTIFYMTGRSDPERIGGLIAYKPGLAGLVMLSGFIMAGVPPFNVFQ 405
Query: 408 SKWLIYESSALFN-PLLGAIAIIGTAFCTAAYVRVLFTFFGRPSEKVMKAKDPGA--TML 464
SK ++ ++S P LG + I+ + ++R ++ + RP + M+ + + +
Sbjct: 406 SKLMLIQASIQAGFPELGVVMILLSIVTFMTFLRAFYSVYLRPEPEGMELESESVPRSTV 465
Query: 465 LPIFILVIAIIGMGLFPWQISDKF 488
+ +L++ +GL PW + +F
Sbjct: 466 FSLVVLILICTALGLAPWIATSQF 489
>emb|CAB59332.1| (AJ236308) NADH dehydrogenase subunit F [Rogiera suffrutescens]
Length = 734
Score = 173 bits (435), Expect = 3e-42
Identities = 121/397 (30%), Positives = 200/397 (49%), Gaps = 34/397 (8%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V + ++YS YM HD +++ + MLG+
Sbjct: 80 DFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMAHDQAYLRFFAYMSFFSTSMLGLV 139
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ ++SY L+ F A K + +LLGI Y
Sbjct: 140 TSSNLIQIYIFWELVGMSSYLLIGFWFTRPLAANACQKAFVTNRIGDFCLLLGILGFYWI 199
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ L + +E + + L G + KS P+H+WL DA P+
Sbjct: 200 TGSFEFRDLFEIFNNLIYNNEVNVLFVTLCAVLLFAGAIAKSAQFPLHVWLPDA-MEGPT 258
Query: 245 SISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQED 304
ISA++ + GI+ +AR++ +F + P + +I +I IT+++G +A+ Q+D
Sbjct: 259 PISALIRAATMVAAGIFLVARLL-PLF--IVIPYIMNFISLI-GIITVLLGATLALAQKD 314
Query: 305 MKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVV 364
+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +G V
Sbjct: 315 IKRGLAYSTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSKALLFLGSGSV 363
Query: 365 LHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES 415
+H + T +N+ + GL K +P T FL+G ++ G+PPL F SK I
Sbjct: 364 IHSMETIVGYPPHKSQNMALMGGLTKHVPITKNTFLLGTLSLCGIPPLACFWSKDEILND 423
Query: 416 SALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFGRPS 450
S L++ + IA TA TA Y+ R+ L TF G S
Sbjct: 424 SWLYSTIFAIIA-WATAGLTAFYMFRIYLLTFEGHLS 459
>emb|CAB59313.1| (AJ236294) NADH dehydrogenase subunit F [Emmenopterys henryi]
Length = 732
Score = 173 bits (434), Expect = 4e-42
Identities = 122/398 (30%), Positives = 197/398 (48%), Gaps = 36/398 (9%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V + ++YS YM HD +++ + MLG+
Sbjct: 80 DFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMAHDQAYLRFFAYMSFFTTSMLGLV 139
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 140 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPLAANACQKAFVTNRIGDFGLLLGILGFYWI 199
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ L + +E + + L G L KS P+H+WL DA P+
Sbjct: 200 TGSFEFRDLFEIFNNLIYNNEVNFLFVTLCAGLVFSGALAKSAQFPLHVWLPDA-MEGPT 258
Query: 245 SISAMLSGLVIKIGGIYAIARVV-FSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQE 303
ISA++ + GI+ +AR++ I P+I + I + IT+++G +A+ Q+
Sbjct: 259 PISALIHAATMVAAGIFLVARLLPLFIVIPSIM-----YFISLIGIITILLGATLALAQK 313
Query: 304 DMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGV 363
D+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +G
Sbjct: 314 DIKRGLAYSTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSKALLFLGSGS 362
Query: 364 VLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYE 414
V+H + T +N+ + GL K +P T FL+G ++ G+PPL F SK I
Sbjct: 363 VIHSMETIVGYSPYKSQNMVLMGGLTKHVPITKNTFLLGTLSLCGIPPLACFWSKDEILN 422
Query: 415 SSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFGRPS 450
S L++ + IA TA TA Y+ R+ L TF G S
Sbjct: 423 DSWLYSTIFAIIA-WATAGLTAFYMFRIYLLTFEGHLS 459
>emb|CAB59321.1| (AJ236301) NADH dehydrogenase subunit F [Mussaenda arcuata]
Length = 695
Score = 173 bits (434), Expect = 4e-42
Identities = 121/397 (30%), Positives = 200/397 (49%), Gaps = 34/397 (8%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V + ++YS YM HD +++ + + MLG+
Sbjct: 80 DFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMAHDQAYLRFFAYLSLFSTSMLGLV 139
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 140 TSSNLIQIYIFWELVGVCSYLLIGFWFTRPLAANACQKAFVTNRIGDFGLLLGILGFYWI 199
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ L + +E + + L G + KS P+H+WL DA P+
Sbjct: 200 TGSFEFRDLFEIFNNLIYNNEVNLLFVTLCAGLVFAGAVAKSAQFPLHVWLPDA-MEGPT 258
Query: 245 SISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQED 304
ISA++ + GI+ +AR++ +F + P + +I +I IT+++G +A+ Q+D
Sbjct: 259 PISALIHAATMVAAGIFLVARLL-PLF--IVIPYIMNFISLI-GIITVLLGATLALAQKD 314
Query: 305 MKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVV 364
+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +G V
Sbjct: 315 IKRGLAYSTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSKALLFLGSGSV 363
Query: 365 LHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES 415
+H + T +N+ + GL K +P T FL+G ++ G+PPL F SK I
Sbjct: 364 IHSMETIVGYSPYKSQNMVLMGGLTKHVPITKNTFLLGTLSLCGIPPLACFWSKNEILND 423
Query: 416 SALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFGRPS 450
S L++ + IA TA TA Y+ R+ L TF G S
Sbjct: 424 SWLYSTIFAIIA-WATAGLTAFYMFRIYLLTFEGHLS 459
>pir||T13814 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Mussaenda
erythrophylla chloroplast (fragment)
>gi|3954980|emb|CAA10212.1| (AJ130836) NADH
dehydrogenase [Mussaenda erythrophylla]
Length = 732
Score = 173 bits (433), Expect = 6e-42
Identities = 121/397 (30%), Positives = 200/397 (49%), Gaps = 34/397 (8%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V + ++YS YM HD +++ + + MLG+
Sbjct: 80 DFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMAHDQAYLRFFAYMSLFSTSMLGLV 139
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 140 TSSNLIQIYIFWELVGVCSYLLIGFWFTRPLAANACQKAFVTNRIGDFGLLLGILGFYWI 199
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ L + +E + + L G + KS P+H+WL DA P+
Sbjct: 200 TGSFEFRDLFEIFNNLIYNNEVNLLFXTLCAGLVFAGAVAKSAQFPLHVWLPDA-MEGPT 258
Query: 245 SISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQED 304
ISA++ + GI+ +AR++ +F + P + +I +I IT+++G +A+ Q+D
Sbjct: 259 PISALIHAATMVAAGIFLVARLL-PLF--IVIPYIMNFISLI-GIITVLLGATLALAQKD 314
Query: 305 MKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVV 364
+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +G V
Sbjct: 315 IKRGLAYSTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSKALLFLGSGSV 363
Query: 365 LHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES 415
+H + T +N+ + GL K +P T FL+G ++ G+PPL F SK I
Sbjct: 364 IHSMETIVGYSPYKSQNMVLMGGLTKHVPITKNTFLLGTLSLCGIPPLACFWSKDEILND 423
Query: 416 SALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFGRPS 450
S L++ + IA TA TA Y+ R+ L TF G S
Sbjct: 424 SWLYSTIFAIIA-WATAGLTAFYMFRIYLLTFEGHLS 459
>emb|CAB59328.1| (AJ236303) NADH dehydrogenase subunit F [Pentagonia macrophylla]
Length = 732
Score = 172 bits (432), Expect = 8e-42
Identities = 122/398 (30%), Positives = 198/398 (49%), Gaps = 36/398 (9%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V + ++YS YM HD +++ + MLG+
Sbjct: 80 DFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMAHDQAYLRFFAYMSFFTTSMLGLV 139
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 140 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPLAANACQKAFVTNRIGDFGLLLGILGFYWI 199
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ L + +E + + L G L KS P+H+WL DA P+
Sbjct: 200 TGSFEFRDLFEIFNNLIYNNEVNFLFVTLCAGLVFSGALAKSAQFPLHVWLPDA-MEGPT 258
Query: 245 SISAMLSGLVIKIGGIYAIARVV-FSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQE 303
ISA++ + GI+ +AR++ I P+I + I + IT+++G +A+ Q+
Sbjct: 259 PISALIHAATMVAAGIFLVARLLPLFIVIPSIM-----YFISLIGIITVLLGATLALAQK 313
Query: 304 DMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGV 363
D+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +G
Sbjct: 314 DIKRGLAYSTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSKALLFLGSGS 362
Query: 364 VLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYE 414
V+H + T +N+ + GL K +P T FL+G ++ G+PPL F SK I
Sbjct: 363 VIHSMETIVGYSPYKSQNMVLMGGLTKHVPITKNTFLLGTLSLCGIPPLACFWSKDEILN 422
Query: 415 SSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFGRPS 450
S L++ ++ AI TA TA Y+ R+ L TF G S
Sbjct: 423 DSWLYS-MIFAIIAWATAGLTAFYMFRIYLLTFEGHLS 459
>emb|CAB59331.1| (AJ236310) NADH dehydrogenase subunit F [Rustia splendens]
Length = 732
Score = 172 bits (432), Expect = 8e-42
Identities = 122/398 (30%), Positives = 199/398 (49%), Gaps = 36/398 (9%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V + ++YS YM HD +++ + + MLG+
Sbjct: 80 DFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMAHDQAYLRFFAYMSLFTTSMLGLV 139
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 140 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPLAANACQKAFVTNRIGDFGLLLGILGSYWI 199
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ L + +E + + L G L KS P+H+WL DA P+
Sbjct: 200 TGSFEFHDLFEILNNLIYNNEVNFLFVTLCAGLVFSGALAKSAQFPLHVWLPDA-MEGPT 258
Query: 245 SISAMLSGLVIKIGGIYAIARVV-FSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQE 303
ISA++ + GI+ +AR++ I P+I + I + IT+++G +A+ Q+
Sbjct: 259 PISALIHAATMVAAGIFLVARLLPLFIVIPSIM-----YFISLIGIITVLLGATLALAQK 313
Query: 304 DMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGV 363
D+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +G
Sbjct: 314 DIKRGLAYSTMSQLGYMMLALGMG-----------SYRNALFHLITHAYSKALLFLGSGS 362
Query: 364 VLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYE 414
V+H + T +N+ + GL K +P T FL+G ++ G+PPL F SK I
Sbjct: 363 VIHSMETIVGYSPYKSQNMVLMGGLTKHVPITKNTFLLGTLSLCGIPPLACFWSKDEILN 422
Query: 415 SSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFGRPS 450
S L++ ++ AI TA TA Y+ R+ L TF G S
Sbjct: 423 DSWLYS-MIFAIIAWATAGLTAFYMFRIYLLTFEGHLS 459
>emb|CAB59337.1| (AJ236312) NADH dehydrogenase subunit F [Simira viridiflora]
Length = 732
Score = 172 bits (432), Expect = 8e-42
Identities = 122/398 (30%), Positives = 198/398 (49%), Gaps = 36/398 (9%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V + ++YS YM HD +++ + MLG+
Sbjct: 80 DFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMAHDQAYLRFFAYMSFFTTSMLGLV 139
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 140 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPLAANACQKAFVTNRIGDFGLLLGILGFYWI 199
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ L + +E + + L G L KS P+H+WL DA P+
Sbjct: 200 TGSFEFRDLFEIFNNLIYNNEVNFLFVTLCAGLVFSGALAKSAQFPLHVWLPDA-MEGPT 258
Query: 245 SISAMLSGLVIKIGGIYAIARVV-FSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQE 303
ISA++ + GI+ +AR++ I P+I + I + IT+++G +A+ Q+
Sbjct: 259 PISALIHAATMVAAGIFLVARLLPLFIVIPSIM-----YFISLIGIITVLLGATLALAQK 313
Query: 304 DMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGV 363
D+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +G
Sbjct: 314 DIKRGLAYSTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSKALLFLGSGS 362
Query: 364 VLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYE 414
V+H + T +N+ + GL K +P T FL+G ++ G+PPL F SK I
Sbjct: 363 VIHSMETIVGYSPYKSQNMVLMGGLTKHVPITKNTFLLGTLSLCGIPPLACFWSKDEILN 422
Query: 415 SSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFGRPS 450
S L++ ++ AI TA TA Y+ R+ L TF G S
Sbjct: 423 DSWLYS-MIFAIIAWATAGLTAFYMFRIYLLTFEGHLS 459
>emb|CAB59314.1| (AJ236297) NADH dehydrogenase subunit F [Guettarda uruguensis]
Length = 734
Score = 171 bits (430), Expect = 1e-41
Identities = 120/397 (30%), Positives = 200/397 (50%), Gaps = 34/397 (8%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V + ++YS YM HD +++ + MLG+
Sbjct: 80 DFSLEFGYLIDPLTSIMSILITTVGIIVLIYSDNYMAHDQAYLRFFAYMSFFSTSMLGLV 139
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ ++SY L+ F A K + +LLGI Y
Sbjct: 140 TSSNLIQIYIFWELVGMSSYLLIGFWFTRPLAANACQKAFVTNRIGDFCLLLGILGFYWI 199
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ L + +E + + L G + KS P+H+WL DA P+
Sbjct: 200 TGSFEFRDLFEIFNNLIYNNEVNFLFVTLCAVLLFAGAVAKSAQFPLHVWLPDA-MEGPT 258
Query: 245 SISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQED 304
ISA++ + GI+ +AR++ +F + P + +I +I IT+++G +A+ Q+D
Sbjct: 259 PISALIRAATMVAAGIFLVARLL-PLF--IVIPYIMNFISLI-GIITVLLGATLALAQKD 314
Query: 305 MKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVV 364
+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +G V
Sbjct: 315 IKRGLAYSTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSKALLFLGSGSV 363
Query: 365 LHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES 415
+H + T +N+ + GL K +P T FL+G ++ G+PPL F SK
Sbjct: 364 IHSMETIVGYSPHKNQNMALMGGLRKHIPITKNTFLLGTLSLCGIPPLACFWSKDEFLND 423
Query: 416 SALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFGRPS 450
S L++ + IA + TA TA Y+ R+ L TF G S
Sbjct: 424 SWLYSTIFAIIAWV-TAGLTAFYMFRIYLLTFEGHLS 459
>emb|CAB65032.1| (AJ235844) NADH dehydrogenase, putative [Gardenia thunbergia]
Length = 734
Score = 171 bits (430), Expect = 1e-41
Identities = 121/398 (30%), Positives = 198/398 (49%), Gaps = 36/398 (9%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + VD +IM ++IT V + ++YS YM HD +++ + + MLG+
Sbjct: 80 DFSLEFGYLVDPLTSIMSILITTVGIMVLIYSDNYMAHDQAYLRFFAYMGLFSTSMLGLV 139
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 140 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPLAANACQKAFVTNRIGDFGLLLGILGFYWI 199
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ L + +E ++ + L G + KS P+H+WL DA P+
Sbjct: 200 TGSFEFRDLFEIFNNLIYNNEVNSLFVTLCAGLVFAGAVAKSAQFPLHVWLPDA-MEGPT 258
Query: 245 SISAMLSGLVIKIGGIYAIARVV-FSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQE 303
ISA++ + GI+ +AR++ I P I + I + IT+++G +A+ Q+
Sbjct: 259 PISALIHAATMVAAGIFLVARLIPLFIVIPYIM-----YFISLIGIITVLLGATLALAQK 313
Query: 304 DMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGV 363
D+KR LA+S++ Q+GY++L LG+G + A++H + HA KALLFL +G
Sbjct: 314 DIKRGLAFSTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSKALLFLGSGS 362
Query: 364 VLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYE 414
V+H + T +N+ + GL K +P T FL+G ++ G+PPL F SK I
Sbjct: 363 VIHSMETIVGYSPYKSQNMVLMGGLTKHIPITKNTFLLGTLSLCGIPPLACFWSKDEILN 422
Query: 415 SSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFGRPS 450
S L++ + IA TA TA Y+ R+ L TF G S
Sbjct: 423 DSWLYSTIFAIIA-WATAGLTAFYMFRIYLLTFEGHLS 459
>sp|P33607|NUOL_ECOLI NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
12) (NUO12) >gi|7432511|pir||D64999 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain L - Escherichia coli
>gi|1788614|gb|AAC75338.1| (AE000317) NADH dehydrogenase
I chain L [Escherichia coli K12]
>gi|1799638|dbj|BAA16106.1| (D90859) NADH dehydrogenase
I chain nuoL [Escherichia coli]
Length = 613
Score = 171 bits (429), Expect = 2e-41
Identities = 138/489 (28%), Positives = 232/489 (47%), Gaps = 44/489 (8%)
Query: 1 MTWLPFIIIIPLFGAFSMPIVSLLKGKAKEIWATII--------SFATLIVGIEVFREVW 52
M L II+PL G +++ +G+ E + I+ + T +G++ F
Sbjct: 1 MNMLALTIILPLIG---FVLLAFSRGRWSENVSAIVGVGSVGLAALVTAFIGVDFF---- 53
Query: 53 SGGTIVYALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGL 112
+ G Y+ T DF I +D M+ ++T V FL +Y+ YM+ + G
Sbjct: 54 ANGEQTYSQPLWTWMSVGDFNIGFNLVLDGLSLTMLSVVTGVGFLIHMYASWYMRGEEGY 113
Query: 113 EKYYTLILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFV 172
+++ + M+ + + ++ Y+ E + + SY L+ F + + A +K V
Sbjct: 114 SRFFAYTNLFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIGFYYTDPKNGAAAMKAFVV 173
Query: 173 GSLASSFVLLGIALLYGQYGTLT---MGYLAVKMSENPTIVAKIALALFLGGLLFKSGAA 229
+ F+ + +LY + GTL M LA + + A + LGG + KS
Sbjct: 174 TRVGDVFLAFALFILYNELGTLNFREMVELAPAHFADGNNMLMWATLMLLGGAVGKSAQL 233
Query: 230 PVHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFAC 289
P+ WLADA A P+ +SA++ + G+Y IAR +F + V ++ I
Sbjct: 234 PLQTWLADA-MAGPTPVSALIHAATMVTAGVYLIAR-THGLF---LMTPEVLHLVGIVGA 288
Query: 290 ITLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVN 349
+TL++ A+VQ D+KR+LAYS++ QIGY+ L LG+ A AI+H +
Sbjct: 289 VTLLLAGFAALVQTDIKRVLAYSTMSQIGYMFLALGVQ-----------AWDAAIFHLMT 337
Query: 350 HALMKALLFLVAGVVL----HELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLN- 404
HA KALLFL +G V+ HE +N+ ++ GL K++P FL+G AA+ +P +
Sbjct: 338 HAFFKALLFLASGSVILACHHE---QNIFKMGGLRKSIPLVYLCFLVGGAALSALPLVTA 394
Query: 405 GFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RVLFTFFGRPSEKVMKAKDPGATM 463
GF SK I + + +A + AF T+ Y R++F F E++ G T
Sbjct: 395 GFFSKDEILAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIVF-HGKEQIHAHAVKGVTH 453
Query: 464 LLPIFILVI 472
LP+ +L+I
Sbjct: 454 SLPLIVLLI 462
>sp|Q9XAR5|NUOL_STRCO NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
L) >gi|7480296|pir||T34613 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 5 [similarity] -
Streptomyces coelicolor >gi|5042266|emb|CAB44520.1|
(AL078618) nuoN, NADH dehydrogenase subunit
[Streptomyces coelicolor]
Length = 654
Score = 171 bits (428), Expect = 2e-41
Identities = 148/530 (27%), Positives = 238/530 (43%), Gaps = 66/530 (12%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEI---W-ATIISFATLIVGIEVFREVWSGG---- 55
+ ++ PL GA +V L G+ + W T+++ + ++G+ +F ++ G
Sbjct: 5 IALLVAAPLLGA----VVLLCGGRRLDRVGHWIGTLLAAVSFVLGVVLFADLLGSGAEDR 60
Query: 56 TIVYALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKY 115
T+ L S P F + + +D+ VL+IT V L LYS+ YM+HD ++
Sbjct: 61 TLTQHLFSWIPV--EGFQADVAFRLDQLSMTFVLLITGVGSLIHLYSVAYMEHDERRRRF 118
Query: 116 YTLILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSL 175
+ + + ML + + + YV E + +ASY L+ F A K V +
Sbjct: 119 FGYLNLFLAAMLILVLADNYLLLYVGWEGVGLASYLLIGFWQHKPSAATAAKKAFLVNRV 178
Query: 176 ASSFVLLGIALLYGQYGTLTMGYL-------AVKMSENPTIVAKIALALFLGGLLFKSGA 228
+ +GI L++ +GT G + + + + IAL L L KS
Sbjct: 179 GDMGLSIGIMLMFLWFGTFAFGPVLGGHGEAGLAAGADEGKLTAIALMLLLAA-CGKSAQ 237
Query: 229 APVHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFA 288
P+ WL DA P+ +SA++ + G+Y I R +IF A + V + I
Sbjct: 238 VPLQSWLGDA-MEGPTPVSALIHAATMVTAGVYLIVR-SGAIFNGAPDAQLV---VTIVG 292
Query: 289 CITLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTV 348
+TL+ G + ++D+K+ LA S++ QIGY++L G+G + Y AI H V
Sbjct: 293 AVTLLFGAIVGCAKDDIKKALAGSTMSQIGYMVLAAGLGPIGY---------VFAIMHLV 343
Query: 349 NHALMKALLFLVAGVVLHELGTR-NLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFA 407
H KA LFL AG V+H + ++ GL K MP T F +G AI+G P L+GF
Sbjct: 344 THGFFKAGLFLGAGSVMHGMNDEVDMRRYGGLRKYMPVTFVTFGLGYLAIIGFPGLSGFF 403
Query: 408 SKWLIYESS----ALFNPLLGAIAIIGTAFCTAAYVRV-LFTFFG--------------- 447
SK I E++ +LGA A++G A RV L TFFG
Sbjct: 404 SKDKIIEAAFAKGGTEGWILGACALLGAAITAYYMTRVMLMTFFGEERWRNAPTPSPAKP 463
Query: 448 --RPSEKVMKAKDP------GATMLLPIFILVIAIIGMGLFPWQISDKFM 489
P+ + +P M +P+ +L + +G G F + I D+FM
Sbjct: 464 DVEPAAETRGTYEPPHPHESPGLMTIPMIVLAVGSVGAGAF-FSIGDRFM 512
>emb|CAB59304.1| (AJ236291) NADH dehydrogenase subunit F [Condaminea corymbosa]
Length = 732
Score = 171 bits (428), Expect = 2e-41
Identities = 121/398 (30%), Positives = 198/398 (49%), Gaps = 36/398 (9%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
+F + + +D +IM ++IT V + ++YS YM HD +++ + MLG+
Sbjct: 80 NFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMAHDQAYLRFFAYMSFFTTSMLGLV 139
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 140 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPLAANACQKAFVTNRIGDFGLLLGILGFYWI 199
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ L + +E + + L G L KS P+H+WL DA P+
Sbjct: 200 TGSFEFRDLFEIFNNLIYNNEVNFLFVTLCAGLIFSGALAKSAQFPLHVWLPDA-MEGPT 258
Query: 245 SISAMLSGLVIKIGGIYAIARVV-FSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQE 303
ISA++ + GI+ +AR++ I P+I + I + IT+++G +A+ Q+
Sbjct: 259 PISALIHAATMVAAGIFLVARLLPLFIVIPSIM-----YFISLIGIITVLLGATLALAQK 313
Query: 304 DMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGV 363
D+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +G
Sbjct: 314 DIKRGLAYSTMSQLGYMILALGMG-----------SYRSALFHLITHAYSKALLFLGSGS 362
Query: 364 VLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYE 414
V+H + T +N+ + GL K +P T FL+G ++ G+PPL F SK I
Sbjct: 363 VIHSMETIVGYSPYKSQNMVLMGGLTKHVPITKNTFLLGTLSLCGIPPLACFWSKDEILN 422
Query: 415 SSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFGRPS 450
S L++ ++ AI TA TA Y+ R+ L TF G S
Sbjct: 423 DSWLYS-MIFAIIAWATAGLTAFYMFRIYLLTFEGHLS 459
>gb|AAF08129.1| (AF130167) NADH dehydrogenase subunit F [Cryptostegia grandiflora]
Length = 743
Score = 170 bits (427), Expect = 3e-41
Identities = 118/400 (29%), Positives = 200/400 (49%), Gaps = 38/400 (9%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V + ++YS YM HD +++ + MLG+
Sbjct: 80 DFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMAHDQAYLRFFAYMSFFSTSMLGLV 139
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 140 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPLAANACQKAFVTNRVGDFGLLLGILGFYWI 199
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ L + +E + + L G + KS P+H+WL DA P+
Sbjct: 200 TGSFEFQDLFEIFNNLISNNEVNFLFVTLCAVLLFAGAVAKSAQFPLHVWLPDA-MEGPT 258
Query: 245 SISAMLSGLVIKIGGIYAIARV--VFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQ 302
ISA++ + GI+ +AR+ +F + +N +I + A ITL++G +A+ Q
Sbjct: 259 PISALIHAATMVAAGIFLVARLLPLFIVIPSIMN------LISLIAIITLLLGATLALAQ 312
Query: 303 EDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAG 362
+D+KR LAY+++ Q+GY++L LG+G + A++H + HA +ALLFL +G
Sbjct: 313 KDIKRGLAYTTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSEALLFLGSG 361
Query: 363 VVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIY 413
V+H + ++N+ + GL K +P T AFL+G ++ G+PPL F SK I
Sbjct: 362 SVIHSMEGIVGYSPYKSQNMILMGGLRKHVPITKNAFLLGTLSLCGIPPLACFWSKDEIL 421
Query: 414 ESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFGRPSE 451
+ L++ + IA + TA A Y+ R+ L TF G +E
Sbjct: 422 NDTWLYSTIFAIIAWV-TAGLNAFYMFRIYLLTFEGHLNE 460
>emb|CAB59303.1| (AJ236285) NADH dehydrogenase subunit F [Calycophyllum
candidissimum]
Length = 732
Score = 169 bits (425), Expect = 5e-41
Identities = 121/397 (30%), Positives = 200/397 (49%), Gaps = 34/397 (8%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V + ++YS YM HD +++ + MLG+
Sbjct: 80 DFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMAHDQAYLRFFAYMSFFTTSMLGLV 139
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 140 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPLAANACQKAFVTNRIGDFGLLLGILGFYWI 199
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ L + +E + + L G L KS P+H+WL DA P+
Sbjct: 200 TGSFEFRDLFEIFNNLIYNNEVNFLFVTLCAGLVFSGALAKSAQFPLHVWLPDA-MEGPT 258
Query: 245 SISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQED 304
ISA++ + I+ +AR++ +F + P+ + +I +I IT+++G +A+ Q+D
Sbjct: 259 PISALIRATTMVAADIFLVARLL-PLF--IVIPSIMNFISLI-GIITVLLGATLALAQKD 314
Query: 305 MKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVV 364
+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +G V
Sbjct: 315 IKRGLAYSTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSKALLFLGSGSV 363
Query: 365 LHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES 415
+H + T +N+ + GL K +P T FL+G ++ G+PPL F SK I
Sbjct: 364 IHSMETIVGYSPYKSQNMVLMGGLTKHVPITKNTFLLGTLSLCGIPPLACFWSKDEILND 423
Query: 416 SALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFGRPS 450
S L++ ++ AI TA TA Y+ R+ L TF G S
Sbjct: 424 SWLYS-MIFAIIAWATAGLTAFYMFRIYLLTFEGHLS 459
>gi|11466469 NADH dehydrogenase subunit 5 [Chrysodidymus synuroideus]
>gi|7110466|gb|AAF36938.1|AF222718_12 (AF222718) NADH
dehydrogenase subunit 5 [Chrysodidymus synuroideus]
Length = 657
Score = 169 bits (425), Expect = 5e-41
Identities = 150/534 (28%), Positives = 243/534 (45%), Gaps = 64/534 (11%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREVWSGGTIVYALGS 63
L II++PLFG F GK ++ F++ + F ++ GT +
Sbjct: 2 LVLIILLPLFGFFFGIAFGRYNGKGTCFITSLTVFSSFFISFYFFIKLLFSGTFYKV--T 59
Query: 64 ETPFGKADFPIRIVWEV--DKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILI 121
P+ +DF + I W D M+++ITF+S L +YS+EYMK D L ++ + + +
Sbjct: 60 LFPWIFSDF-LTINWNFYFDSLTLGMLIVITFISTLVHIYSIEYMKEDPHLNRFMSYLSL 118
Query: 122 LELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVL 181
ML + + + +V E + ++SY L+ F + ++ IK M + + F L
Sbjct: 119 FTFFMLVLVTSNNFLQLFVGWEGVGLSSYLLINFWFTRIQANKSSIKAMVLNRIGDFFFL 178
Query: 182 LGIALLYGQYGTLTMG------------YLAVKMSENPTIVAKIALALFLGGLLFKSGAA 229
+ I LY +L Y+ + +++ ++ I L LFLG KS
Sbjct: 179 IAIFSLYLITNSLDFDVIFSLVTLIKEYYIQIGIAKF-CVLDLICLCLFLGA-TGKSAQL 236
Query: 230 PVHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFAC 289
+H WL DA P+ +SA++ + G++ I R F + +P + +III
Sbjct: 237 GLHSWLPDA-MEGPTPVSALIHAATMVTAGVFLIIRCSFLFEY---SPLILN-LIIIIGS 291
Query: 290 ITLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVN 349
IT + ++Q D+KR++AYS+ Q+GY+ G+ G +H N
Sbjct: 292 ITALFAATTGLLQNDIKRVIAYSTCSQLGYMFFACGLSSYDVG-----------FFHLYN 340
Query: 350 HALMKALLFLVAGVVLHELGT-RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFAS 408
HA KALLFL AG V+H L +++ ++ GL +P + LIG+ +++G P L+GF S
Sbjct: 341 HAFFKALLFLGAGSVIHALANEQDMRKMGGLRIILPFSYSIMLIGSLSLIGFPFLSGFYS 400
Query: 409 KWLI-------YESSALFNPLLGAIAIIGTAFCTAAY-VRVLFTFF----GRPSEKVMKA 456
K +I Y + F LG +A AFCTA Y RVL F ++ A
Sbjct: 401 KDVILEIAYAKYNTFGHFAYYLGVLA----AFCTAFYSTRVLILVFLINTNGFRTNILNA 456
Query: 457 KDPGATMLLPIFILVI-----------AIIGMGLFPWQISDKFMVPAAKSLWDI 499
+ +LP+F L I IG G W + F++P SL DI
Sbjct: 457 HEGSYFFVLPLFFLTILSIISGYLSKDLFIGFGTDFWS-NVIFILPYNYSLSDI 509
>pir||S08621 probable hydrogenase 3 protein 3 - Escherichia coli
>gi|41682|emb|CAA35548.1| (X17506) hycC [Escherichia
coli] >gi|1093496|prf||2104213C hycC gene [Escherichia
coli]
Length = 608
Score = 169 bits (424), Expect = 7e-41
Identities = 126/428 (29%), Positives = 210/428 (48%), Gaps = 45/428 (10%)
Query: 79 EVDKFGAIMVLIITFVSFLAILYSLEYMKHD----TGLEKYYTLILILELGMLGIAITGD 134
++ AI ++ + LY++++ +H GL+ I +L + I +
Sbjct: 72 QISPLNAIWLITLGLCGLFVSLYNIDWHRHAQVKCNGLQ-----INMLMAAAVCAVIASN 126
Query: 135 IFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQYGTL 194
+ F V EIM++ + L + + G + +G L + + + LL+ +YGTL
Sbjct: 127 LGMFVVMAEIMALCAVFLTS-------NSKEGKLWFALGRLGTLLLAIACWLLWQRYGTL 179
Query: 195 TMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPSSISAMLSGLV 254
+ L ++M + P L + GLL +G P+H W+ AH A + +A+ S +V
Sbjct: 180 DLRLLDMRMQQLPLGSDIWLLGVIGFGLL--AGIIPLHGWVPQAHANASTPAAALFSTVV 237
Query: 255 IKIG--GIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQEDMKRLLAYS 312
+KIG GI ++ + + P G +++ IT VG A+V+ +++RLLAY
Sbjct: 238 MKIGLLGILTLSLLGGNA------PLWWGIALLVLGMITAFVGGLYALVEHNIQRLLAYH 291
Query: 313 SVGQIGYILLGLGIGIVAYGSK---VGEIALAGAIYHTVNHALMKALLFLVAGVVLHELG 369
++ IG ILLGLG G+ + + + L G +YH +NH+L K++LFL AG V G
Sbjct: 292 TLENIGIILLGLGAGVTGIALEQPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTG 351
Query: 370 TRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYE-------SSALFNPL 422
R++ +L G+ K MP + A L+G A+ +PPLNGFA +W+IY+ S A L
Sbjct: 352 HRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFKLSNSGAFVARL 411
Query: 423 LGAIAIIGTAFCTAAYVRVL-----FTFFGRPSEKVMKAKDPGATMLLPIFILVIAI--- 474
LG + +G A A V + TF G P K + A +L+ + ++ +AI
Sbjct: 412 LGPLLAVGLAITGALAVMCMAKVYGVTFLGAPRTKEAE-NATCAPLLMSVSVVALAICCV 470
Query: 475 IGMGLFPW 482
IG PW
Sbjct: 471 IGGVAAPW 478
>sp|P16429|HYCC_ECOLI FORMATE HYDROGENLYASE SUBUNIT 3 (FHL SUBUNIT 3) (HYDROGENASE-3
COMPONENT C) >gi|7446809|pir||G65052 hydrogenase (EC
1.18.99.1) 3 chain 3 - Escherichia coli
>gi|2367154|gb|AAC75765.1| (AE000356) membrane-spanning
protein of hydrogenase 3 (part of FHL complex)
[Escherichia coli K12]
Length = 608
Score = 169 bits (424), Expect = 7e-41
Identities = 126/428 (29%), Positives = 210/428 (48%), Gaps = 45/428 (10%)
Query: 79 EVDKFGAIMVLIITFVSFLAILYSLEYMKHD----TGLEKYYTLILILELGMLGIAITGD 134
++ AI ++ + LY++++ +H GL+ I +L + I +
Sbjct: 72 QISPLNAIWLITLGLCGLFVSLYNIDWHRHAQVKCNGLQ-----INMLMAAAVCAVIASN 126
Query: 135 IFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQYGTL 194
+ F V EIM++ + L + + G + +G L + + + LL+ +YGTL
Sbjct: 127 LGMFVVMAEIMALCAVFLTS-------NSKEGKLWFALGRLGTLLLAIACWLLWQRYGTL 179
Query: 195 TMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPSSISAMLSGLV 254
+ L ++M + P L + GLL +G P+H W+ AH A + +A+ S +V
Sbjct: 180 DLRLLDMRMQQLPLGSDIWLLGVIGFGLL--AGIIPLHGWVPQAHANASAPAAALFSTVV 237
Query: 255 IKIG--GIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQEDMKRLLAYS 312
+KIG GI ++ + + P G +++ IT VG A+V+ +++RLLAY
Sbjct: 238 MKIGLLGILTLSLLGGNA------PLWWGIALLVLGMITAFVGGLYALVEHNIQRLLAYH 291
Query: 313 SVGQIGYILLGLGIGIVAYGSK---VGEIALAGAIYHTVNHALMKALLFLVAGVVLHELG 369
++ IG ILLGLG G+ + + + L G +YH +NH+L K++LFL AG V G
Sbjct: 292 TLENIGIILLGLGAGVTGIALEQPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFRTG 351
Query: 370 TRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYE-------SSALFNPL 422
R++ +L G+ K MP + A L+G A+ +PPLNGFA +W+IY+ S A L
Sbjct: 352 HRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFKLSNSGAFVARL 411
Query: 423 LGAIAIIGTAFCTAAYVRVL-----FTFFGRPSEKVMKAKDPGATMLLPIFILVIAI--- 474
LG + +G A A V + TF G P K + A +L+ + ++ +AI
Sbjct: 412 LGPLLAVGLAITGALAVMCMAKVYGVTFLGAPRTKEAE-NATCAPLLMSVSVVALAICCV 470
Query: 475 IGMGLFPW 482
IG PW
Sbjct: 471 IGGVAAPW 478
>gb|AAA69233.1| (U29579) formate hydrogenlyase subunit 3 [Escherichia coli]
Length = 608
Score = 169 bits (423), Expect = 9e-41
Identities = 126/430 (29%), Positives = 212/430 (49%), Gaps = 49/430 (11%)
Query: 79 EVDKFGAIMVLIITFVSFLAILYSLEYMKHD----TGLEKYYTLILILELGMLGIAITGD 134
++ AI ++ + LY++++ +H GL+ I +L + I +
Sbjct: 72 QISPLNAIWLITLGLCGLFVSLYNIDWHRHAQVKCNGLQ-----INMLMAAAVCAVIASN 126
Query: 135 IFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQYGTL 194
+ F V EIM++ + L + + G + +G L + + + LL+ +YGTL
Sbjct: 127 LGMFVVMAEIMALCAVFLTS-------NSKEGKLWFALGRLGTLLLAIACWLLWQRYGTL 179
Query: 195 TMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPSSISAMLSGLV 254
+ L ++M + P L + GLL +G P+H W+ AH A + +A+ S +V
Sbjct: 180 DLRLLDMRMQQLPLGSDIWLLGVIGFGLL--AGIIPLHGWVPQAHANASAPAAALFSTVV 237
Query: 255 IKIG--GIYAIARVVFS--IFWPAINPATVGWIIIIFACITLIVGNAMAVVQEDMKRLLA 310
+KIG GI ++ + + ++W G +++ IT VG A+V+ +++RLLA
Sbjct: 238 MKIGLLGILTLSLLGGNAXLWW--------GIALLVLGMITAFVGGLYALVEHNIQRLLA 289
Query: 311 YSSVGQIGYILLGLGIGIVAYGSK---VGEIALAGAIYHTVNHALMKALLFLVAGVVLHE 367
Y ++ IG ILLGLG G+ + + + L G +YH +NH+L K++LFL AG V
Sbjct: 290 YHTLENIGIILLGLGAGVTGIALEQPALIALGLVGGLYHLLNHSLFKSVLFLGAGSVWFR 349
Query: 368 LGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYE-------SSALFN 420
G R++ +L G+ K MP + A L+G A+ +PPLNGFA +W+IY+ S A
Sbjct: 350 TGHRDIEKLGGIGKKMPVISIAMLVGLMAMAALPPLNGFAGEWVIYQSFFKLSNSGAFVA 409
Query: 421 PLLGAIAIIGTAFCTAAYVRVL-----FTFFGRPSEKVMKAKDPGATMLLPIFILVIAI- 474
LLG + +G A A V + TF G P K + A +L+ + ++ +AI
Sbjct: 410 RLLGPLLAVGLAITGALAVMCMAKVYGVTFLGAPRTKEAE-NATCAPLLMSVSVVALAIC 468
Query: 475 --IGMGLFPW 482
IG PW
Sbjct: 469 CVIGGVAAPW 478
>emb|CAB65393.1| (AJ235845) NADH dehydrogenase, putative [Rondeletia odorata]
Length = 734
Score = 169 bits (423), Expect = 9e-41
Identities = 119/397 (29%), Positives = 200/397 (49%), Gaps = 34/397 (8%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V + ++YS YM HD +++ + MLG+
Sbjct: 80 DFCLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMAHDRAYLRFFAYMSFFTTSMLGLV 139
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ ++SY L+ F A K + +LLGI Y
Sbjct: 140 TSSNLIQIYIFWELVGMSSYLLIGFWFTRPFAANACQKAFVTNRIGDFGLLLGILGFYWI 199
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ L + +E + + L G + KS P+H+WL DA P+
Sbjct: 200 TGSXEFRDLFQIFNNLIYNNEVNFLFVTLCAVLLFAGAIAKSAQFPLHVWLPDA-MEGPT 258
Query: 245 SISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQED 304
ISA++ + GI+ +AR++ +F + P + +I +I IT+++G +A+ Q+D
Sbjct: 259 PISALIHAATMVAAGIFLVARLL-PLF--IVIPYIMNFISLI-GIITVLLGATLALAQKD 314
Query: 305 MKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVV 364
+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +G +
Sbjct: 315 IKRGLAYSTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSKALLFLGSGSI 363
Query: 365 LHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES 415
+H + ++N+ + GL K +P T FL+G ++ G+PPL F SK I
Sbjct: 364 IHSMERIVGYSPHKSQNMALMGGLTKHVPITKNTFLLGTLSLCGIPPLACFWSKDEILND 423
Query: 416 SALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFGRPS 450
S L++ + IA TA TA Y+ R+ L TF G S
Sbjct: 424 SWLYSTIFAIIA-WATAGLTAFYMFRIYLLTFEGHLS 459
>gi|11466663 NADH dehydrogenase subunit 5 [Malawimonas jakobiformis]
>gi|10178701|gb|AAG13713.1|AF295546_39 (AF295546) NADH
dehydrogenase subunit 5 [Malawimonas jakobiformis]
Length = 667
Score = 169 bits (423), Expect = 9e-41
Identities = 136/508 (26%), Positives = 233/508 (45%), Gaps = 62/508 (12%)
Query: 17 SMPIVS---------LLKGKAKEIWATIISFATLIVGIEVFREVWSGGTIVYALGSETPF 67
++PIVS + K +I T + I+ I F EV G+ Y G T
Sbjct: 7 TLPIVSAIISGFGGRFIGSKGSQILTTSCLLVSAILSIIAFYEVGILGSPCYITGF-TWI 65
Query: 68 GKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGML 127
F + D +M++++T ++ L LYS+EYM HD ++++ I I ML
Sbjct: 66 DSGLFNLNYGLLFDSLTVVMLIVVTVIATLVNLYSVEYMSHDPHQPRFFSYISIFTFAML 125
Query: 128 GIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALL 187
+ + ++ E + ++SY L+ F + ++ IK M V + + LGI +
Sbjct: 126 ILVTANNYLQMFIGWEGVGVSSYLLINFWFTRIQANKSAIKAMIVNRVGDFGLALGIMAI 185
Query: 188 YGQYGTLTMGYLAVK-----------MSENPTIVAKIALALFLGGLLFKSGAAPVHMWLA 236
Y Y ++ + ++ + I+L LF+G + KS +H WL
Sbjct: 186 YYVYRSIDFSVIFASSYYLFNSKILFLNYEIDAITIISLLLFIGA-IGKSAQIGLHTWLP 244
Query: 237 DAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGN 296
DA P+ +SA++ + G++ I R S + A V II I IT
Sbjct: 245 DA-MEGPTPVSALIHAATMVTAGVFMIIR--SSPLLEFTHNALV--IITIMGAITAFFAA 299
Query: 297 AMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKAL 356
V Q D+KR++AYS+ Q+GY++ G+ + + +++H +NHA KAL
Sbjct: 300 TTGVTQNDLKRVIAYSTCSQLGYMIFACGLS-----------SYSVSLFHLMNHAFFKAL 348
Query: 357 LFLVAGVVLHELG-TRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES 415
LFL AG V+H + +++ ++ G + +P T LIG+ +++G+P L GF SK +I E
Sbjct: 349 LFLSAGSVIHAIADEQDMRKMGGFVQIIPFTYVLILIGSLSLMGIPFLTGFYSKDVILEL 408
Query: 416 S-------ALFNPLLGAIAIIGTAFCTAAYVRVLFTFFGRPS---EKVMKAKDPGATMLL 465
+ + F+ LG I+ + T+F ++ + TFF + + E V D M++
Sbjct: 409 AFANFHVYSSFSYWLGTISALFTSF--YSFRLIYLTFFNKTNAFKETVSNMHDAPIIMII 466
Query: 466 PIFILVIA-----------IIGMGLFPW 482
P+F+L + IIGMG W
Sbjct: 467 PLFLLGLGSIFIGYLTKDMIIGMGTHFW 494
>gi|11465866 NADH dehydrogenase subunit 5 [Ochromonas danica]
>gi|10505199|gb|AAG18381.1|AF287134_6 (AF287134) NADH
dehydrogenase subunit 5 [Ochromonas danica]
Length = 667
Score = 169 bits (423), Expect = 9e-41
Identities = 143/496 (28%), Positives = 233/496 (46%), Gaps = 46/496 (9%)
Query: 7 IIIIPLFGAFSMPIVSLLKGKAKEIWATIIS-FATLIVGIEVFREVWSG--GTIVYALGS 63
II++PL G S + GK I T+ + F++ + I +F + T+V
Sbjct: 5 IIVLPLLGFLSGSLFGKFLGKGVGIITTLTTIFSSFLSFILLFTVINQSLVKTLVINNWI 64
Query: 64 ETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILE 123
+ F K D+ D +M++++TF+S L LYS EYM+HD ++ + + +
Sbjct: 65 HSGFLKIDWSFCF----DSLTCVMLVVVTFISSLVHLYSTEYMEHDPHFPRFMSYLSLFT 120
Query: 124 LGMLGIAITGDIF-NFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLL 182
ML I ITGD F +V E + I+SY L+ F + ++ IK M V + F+LL
Sbjct: 121 FFML-ILITGDNFLQMFVGWEGVGISSYLLINFWFTRIQANKSAIKAMLVNRIGDFFLLL 179
Query: 183 GIALLYGQYGTLT-----------MGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPV 231
I L+ + TL + Y + + ++ I + +FLG + KS +
Sbjct: 180 AIFTLFITFNTLDYDIIFSVTPLFINYNIGLFNYHIGLIDIICIFIFLGA-MGKSAQIGL 238
Query: 232 HMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACIT 291
H WL DA P+ +SA++ + G++ I R + I + I+ + +T
Sbjct: 239 HTWLPDA-MEGPTPVSALIHAATMVTAGVFLIVRCSYLFEHSPIALS----IVTVIGSMT 293
Query: 292 LIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHA 351
+ Q DMK+++AYS+ Q+GY++ G+ + +I+H NHA
Sbjct: 294 AFFAATTGLFQNDMKKVIAYSTCSQLGYMIFSCGLS-----------SYEVSIFHLSNHA 342
Query: 352 LMKALLFLVAGVVLHELG-TRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKW 410
KALLFL AG V+H L +++ ++ GL +P + LIG+ A+VG P L GF SK
Sbjct: 343 FFKALLFLGAGAVIHALSDEQDMRKMGGLKNLLPFSYAISLIGSLALVGFPFLTGFYSKD 402
Query: 411 LIYESSALFNPLLGAIAI---IGTAFCTAAY-VRVLF-TFFGRPSEK---VMKAKDPGAT 462
+I E SA + G A I FCTA Y R+L+ F P+ ++ A +
Sbjct: 403 VILEISASTYTIYGQFAFFLGILATFCTAFYSTRLLYLVFLSYPNGNKNIILNAHEGSFR 462
Query: 463 MLLPIFILVIAIIGMG 478
+ P+ IL I +G
Sbjct: 463 LTFPLGILCFFSIFIG 478
>pir||E69033 NADH dehydrogenase I, subunit N - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622358|gb|AAB85735.1| (AE000891) NADH dehydrogenase
I, subunit N [Methanobacterium thermoautotrophicum]
Length = 498
Score = 168 bits (422), Expect = 1e-40
Identities = 127/508 (25%), Positives = 247/508 (48%), Gaps = 46/508 (9%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREV---WSGGTIVYA 60
+P ++++P+ A +++LL G+ + + A ++ A L+ I + + GG YA
Sbjct: 5 IPVMVVLPILCAL---LLNLLHGRDRTVKALAVAVAILLPIIPLLAGYGVHYFGG---YA 58
Query: 61 LGSETPFGKADFPIRI------------VWEVDKFGAIMVLIITFVSFLAILYSLEYMKH 108
SE A P I + I +LI++ V+FLA+L SL ++
Sbjct: 59 PLSENSTIAAGLPASIKSSYLYSFHPAITYVFGSAQRIFLLILSLVTFLAVLTSLNEVRR 118
Query: 109 DTGLEKYYTLILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIK 168
+G+ Y L+ + + I +T DIFN YVF EI ++A +V E +K
Sbjct: 119 PSGV--YAFLMFMGTAAVTAIVLTDDIFNLYVFFEIAALAQVGVVLCS-GVERNYETALK 175
Query: 169 YMFVGSLASSFVLLGIALLYGQYGTLTMGYLAVKMSE---NP-TIVAKIALALFLGGLLF 224
YM +G +A +LLG+ +L G + + + M NP + + +A AL + G L+
Sbjct: 176 YMMIGGVAVPMLLLGVGILLALTGNVNISDIVYSMRSGLVNPGSPLFLLASALLIFGWLY 235
Query: 225 KSGAAPVHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWII 284
+G P H + + A SA+L + A+A V+ +F+ + V W++
Sbjct: 236 GTGLPPFHTIKSAIYSKALPHGSALLQAF--SVFTFTALAIVILRMFY---HVPLVRWVM 290
Query: 285 IIFACITLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAI 344
+ F+ +++G +MA++Q D++R++ + +VG++GYI +GLG+G A +++ +
Sbjct: 291 VFFSLAGMVLGISMALMQTDLRRMIGFLAVGELGYIGIGLGLGTAA--------SISAGL 342
Query: 345 YHTVNHALMKALLFLVAGVVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLN 404
+ VN AL+ A +FL G + + G + + GL P ++ + G+PP N
Sbjct: 343 FQAVNEALITACIFLGFGTIFYMTGKTDPEAMGGLLAYKPGLAGLVMLSGFIMAGVPPFN 402
Query: 405 GFASKWLIYESSALFN-PLLGAIAIIGTAFCTAAYVRVLFTFFGRPSEKVMKAKD---PG 460
F SK + +++ P LG + I+ + ++R ++ + +P + M+ + P
Sbjct: 403 VFQSKLRLIQAAIQAGVPELGILMILLSIVTFMTFMRAFYSVYLKPEPRGMELESRSVPR 462
Query: 461 ATMLLPIFILVIAIIGMGLFPWQISDKF 488
+T+ + +++I + +G+ PW + +F
Sbjct: 463 STVFSMVVLIIICTV-LGIAPWLATSQF 489
>pir||T12129 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 -
Streptocarpus sp. chloroplast (fragment)
>gi|2897083|gb|AAC03345.1| (AF012849) NADH dehydrogenase
[Streptocarpus sp.]
Length = 685
Score = 168 bits (422), Expect = 1e-40
Identities = 133/485 (27%), Positives = 233/485 (47%), Gaps = 40/485 (8%)
Query: 4 LPFIII-IPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVY 59
+PF+ + +P+ + + ++ +WA ++ +I I + ++ + +I
Sbjct: 4 IPFLPLPVPMLIGMGLLLFPTATKSSRRMWAFTSILLLSIVMIFSINLSIQLINSSSIYQ 63
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
+ S T DF + + +D +IM ++IT V + ++YS YM +D G +++ +
Sbjct: 64 YIWSWTLDN--DFCLEFGYLIDPLTSIMSMLITTVGIMVLIYSDNYMAYDQGYLRFFAYM 121
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
+ MLG+ + ++ Y+F E++ + SY L+ F A K +
Sbjct: 122 SFFSISMLGLVTSSNLIQIYLFWELVGMCSYLLIGFWFTRPFEANACQKAFVTNRVGDFG 181
Query: 180 VLLGIALLYGQYGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHM 233
+LLGI Y G+ L + +E + + AL G + KS H+
Sbjct: 182 LLLGILGFYWITGSFEFRDLFEIFNNLIYNNEVDSPFVTLCAALLFSGAVAKSAKFLFHV 241
Query: 234 WLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLI 293
WL DA P+ ISA++ + GI+ +AR++ +F + P + +I +I IT+
Sbjct: 242 WLPDA-MEGPTPISALIHAATMVATGIFLVARLL-PLF--IVIPYIMNFISLI-GIITVF 296
Query: 294 VGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALM 353
+G +A+ Q+D+KR LAYS++ Q+GY++L LG+G + A++H + HA
Sbjct: 297 LGATLALAQKDIKRGLAYSTMSQLGYMMLALGMG-----------SYRSALFHLITHAYS 345
Query: 354 KALLFLVAGVVLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLN 404
KALLFL +G V+H + T +N+ + GL K +P T +FL G ++ G+PPL
Sbjct: 346 KALLFLGSGSVIHSMETVVGYSPDKSQNMVIMGGLTKHVPITKISFLFGTLSLCGIPPLA 405
Query: 405 GFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFGRPSEKVMKAKDPGAT 462
F SK I S L++P+ IA TA T+ Y+ R+ L TF G + T
Sbjct: 406 CFWSKDEILNDSWLYSPIFAIIA-WSTAGLTSFYMFRIYLLTFEGHFNSNFQTXXXKQNT 464
Query: 463 MLLPI 467
+L I
Sbjct: 465 LLYSI 469
>gb|AAF08190.1| (AF130234) NADH dehydrogenase subunit F [Lamprocapnos spectabilis]
Length = 697
Score = 168 bits (422), Expect = 1e-40
Identities = 129/488 (26%), Positives = 235/488 (47%), Gaps = 44/488 (9%)
Query: 4 LPFIII-IPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVY 59
+PF+ + +P+ + +V + +WA ++ ++ ++ + +G +I
Sbjct: 2 IPFVPLPVPIAIGLGLLLVPTATKNLRRMWAFPSVLLLSIVMLFSADLAIQQINGSSIYQ 61
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
+ S T +F + + +D +IM ++IT V + ++YS YM HD ++ +
Sbjct: 62 YIWSWTI--NHNFSLEFGYLIDPLTSIMSILITTVGIIVLIYSDNYMFHDQRYLIFFAYM 119
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
MLG+ + ++ Y+F E++ + SY L+ F A K +
Sbjct: 120 SFSNASMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPIAANACQKAFVTNRVGDFG 179
Query: 180 VLLGIALLY---GQYGTLTMGYLAVKMSENPTI---VAKIALALFLGGLLFKSGAAPVHM 233
+LLG LY G + + + + +N + ++ AL G + KS P+H+
Sbjct: 180 LLLGTLGLYWITGSFEFRDLFKIVNNLIDNHGVNFLFLTLSAALLFLGAIAKSAQFPLHV 239
Query: 234 WLADAHPAAPSSISAMLSGLVIKIGGIYAIARV--VFSIFWPAINPATVGWIIIIFACIT 291
WL +A P+ ISA++ + GI+ +AR+ +F++ +N +I + IT
Sbjct: 240 WLPEA-MEGPTPISALIHAATMVAAGIFLVARLLPLFAVIPYVMN------LISLIGTIT 292
Query: 292 LIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHA 351
L++G +A+ Q D+KR LAYS++ Q+GYI+L LG+G + A++H + HA
Sbjct: 293 LLLGATLALAQIDIKRSLAYSTMSQLGYIMLALGMG-----------SYHAALFHLITHA 341
Query: 352 LMKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPP 402
KALLFL +G ++H + ++N+ + GL K +P T + +G ++ G+PP
Sbjct: 342 YSKALLFLGSGSIIHSMERIVGYSPDKSQNMALMGGLTKYVPITKISVFLGTLSLCGIPP 401
Query: 403 LNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFGRPSEKVMKAKDPG 460
L F SK I S L++P+ IA TA T Y+ R+ L TF GR + + K
Sbjct: 402 LACFWSKDEILNDSWLYSPIFAIIACF-TAGLTGFYMFRIYLLTFEGRLNVYLQNGKKNS 460
Query: 461 ATMLLPIF 468
+ +PI+
Sbjct: 461 SFYSIPIW 468
>sp|P50973|NUON_RHOCA NADH DEHYDROGENASE I CHAIN N (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
N) >gi|3282579|gb|AAC25005.1| (AF029365) NUON
[Rhodobacter capsulatus] >gi|1586528|prf||2204231J NADH
ubiquinone oxidoreductase [Rhodobacter capsulatus]
Length = 478
Score = 168 bits (421), Expect = 1e-40
Identities = 134/470 (28%), Positives = 222/470 (46%), Gaps = 48/470 (10%)
Query: 30 EIWATIISFATLIVGIEVFRE------VWSGGTIVYAL--------GSETPFGKADFPIR 75
E+ I + L+ G+ ++ +W+ + AL G++T FG
Sbjct: 12 EVLLAIYAMGVLLFGVWTGKDRVAKPILWASAVTMLALALIIGLGTGNDTAFGG------ 65
Query: 76 IVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILEL-GMLGIAITGD 134
++ D F ++I + + S +YM L Y ++++L + GM+ + GD
Sbjct: 66 -LFIADGFARFSKVVILVSAAAVLAMSSDYMGRRGLLRFEYPILIVLAVVGMMMMVSAGD 124
Query: 135 IFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQYGTL 194
+ + Y+ LE+ S+A Y + A R D+ EAG+KY +GSL+S +L G +L+YG GT
Sbjct: 125 LMSLYIGLELQSLALYVVAALRRDSAVSSEAGLKYFVLGSLSSGLLLYGASLVYGFAGTT 184
Query: 195 TM-GYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPSSISAMLSGL 253
T G + V + I L L GL FK A P HMW D + +P+ ++A +
Sbjct: 185 TFSGIITVVEQGHLPIGLLFGLVFLLAGLAFKVSAVPFHMWTPDVYEGSPTPVTAFFA-T 243
Query: 254 VIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQEDMKRLLAYSS 313
K+ + IARVV F P G I+ A ++ +G + Q D+KRL+AYSS
Sbjct: 244 APKLAAMALIARVVHDAFGQV--PGEWGQILAALALASMYLGAIAGIGQRDIKRLMAYSS 301
Query: 314 VGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVA-GVVLHELGTRN 372
+ +G+ LLGL G A V + L IY +N +L + G + E+ N
Sbjct: 302 ISHMGFGLLGLAAGTAA---GVESMLLYMTIYIVMNVGTFAFILSMERDGKPVTEIAALN 358
Query: 373 LNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSA----LFNPLLGAIAI 428
+ L+KT P FA L+ ++ G+PP+ GF +K+ + +++ ++ P+ +A
Sbjct: 359 M-----LSKTDPVKAFALLVLLFSLAGVPPMLGFFAKFAVIKAAIGAGFVWVPVAAVVAS 413
Query: 429 IGTAFCTAAYVRVL-FTFFGRPSEKVMKAKDPGATMLLPIFILVIAIIGM 477
+ AF Y+R++ F +FG S A G L LV+A + M
Sbjct: 414 VIGAF---YYLRIVYFMYFGEKS-----APLDGRMPALQFAFLVLAAVAM 455
>emb|CAB59302.1| (AJ236290) NADH dehydrogenase subunit F [Coffea arabica]
Length = 732
Score = 168 bits (421), Expect = 1e-40
Identities = 120/397 (30%), Positives = 198/397 (49%), Gaps = 34/397 (8%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V + ++YS YM HD +++ + MLG+
Sbjct: 80 DFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMAHDQAYLRFFAYMGFFSTSMLGLV 139
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 140 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPLAANACQKAFVTNRIGDFGLLLGILGFYWI 199
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ L + +E + L G + KS P+H+WL DA P+
Sbjct: 200 TGSFEFRDLFEIFNNLIYDNEVNLXFVTLCAGLVFAGAVAKSAQFPLHVWLPDA-MEGPT 258
Query: 245 SISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQED 304
ISA++ + GI+ +AR++ +F + P + +I +I IT+++G +A+ Q+D
Sbjct: 259 PISALIRAATMVAAGIFLVARLI-PLF--IVIPYIMNFISLI-GIITVLLGATLALAQKD 314
Query: 305 MKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVV 364
+KR LA+S++ Q+GY++L LG+G + A++H + HA KALLFL +G V
Sbjct: 315 IKRGLAFSTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSKALLFLGSGSV 363
Query: 365 LHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES 415
+H + T +N+ + GL K +P T FL+G ++ G+PPL F SK I
Sbjct: 364 IHSMETIVGYSPYKSQNMVLMGGLTKHIPITKNTFLLGTLSLCGIPPLACFWSKDEILND 423
Query: 416 SALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFGRPS 450
S L++ + IA TA TA Y+ R+ L TF G S
Sbjct: 424 SWLYSTIFAIIA-WATAGLTAFYMFRIYLLTFEGHLS 459
>emb|CAB59309.1| (AJ236288) NADH dehydrogenase subunit F [Cephalanthus occidentalis]
Length = 740
Score = 168 bits (421), Expect = 1e-40
Identities = 119/399 (29%), Positives = 195/399 (48%), Gaps = 38/399 (9%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V + ++YS YM HD ++ + MLG+
Sbjct: 80 DFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMAHDQAYLIFFAYMSFFSTSMLGLV 139
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 140 TSSNLIQIYIFWELVGVCSYLLIGFWFTRPLAANACQKAFVTNRMGDFCLLLGILGFYWI 199
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ L + +E + + L G + KS P+H+WL DA P+
Sbjct: 200 TGSFEFRDLFEIFNNLIYNNEVNFLFVTLCAVLLFAGAVAKSAQFPLHVWLPDA-MEGPT 258
Query: 245 SISAMLSGLVIKIGGIYAIARV--VFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQ 302
ISA++ + G + +AR+ +F + +N +I + IT+++G +A+ Q
Sbjct: 259 PISALIHAATMVAAGTFLVARLLPLFIVIPYIMN------LISLIGIITVLLGATLALAQ 312
Query: 303 EDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAG 362
+D+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL +G
Sbjct: 313 KDIKRGLAYSTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSKALLFLGSG 361
Query: 363 VVLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIY 413
V+H + T +N+ + GL K +P T FL+G ++ G+PPL F SK I
Sbjct: 362 SVIHSMETVVGYSPHKSQNMALMGGLRKHVPITKNTFLLGTLSLCGIPPLACFWSKDEIL 421
Query: 414 ESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFGRPS 450
S L++ + IA TA TA Y+ R+ L TF G S
Sbjct: 422 NDSWLYSTIFAIIA-WATAGLTAFYMFRIYLLTFEGHLS 459
>gb|AAB94516.1| (AF013999) NADH dehydrogenase subunit F [Hydrolea ovata]
Length = 684
Score = 168 bits (420), Expect = 2e-40
Identities = 118/400 (29%), Positives = 193/400 (47%), Gaps = 36/400 (9%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V + ++YS YM HD G +++ + MLG+
Sbjct: 72 DFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMAHDQGYLRFFAYMSFFSTSMLGLV 131
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 132 TSSNLIQIYIFWELVGLCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGFYWI 191
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ L + +E + + L G + KS P+H+WL DA P+
Sbjct: 192 TGSFEFRDLFEIFNSLIDKNEVNFVFVTLCAVLLFAGAVAKSAQFPLHVWLPDA-MEGPT 250
Query: 245 SISAMLSGLVIKIGGIYAIARVV-FSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQE 303
ISA++ + I+ +AR++ IF P I I IT+ +G +A+ Q+
Sbjct: 251 PISALIXXATMVAXXIFLVARLLPLFIFIPYIMN-----FISXIGIITVFLGATLALAQK 305
Query: 304 DMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGV 363
D+KR LA S++ Q+GY++L LG+G + A++H + HA KALLFL +G
Sbjct: 306 DIKRGLAISTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSKALLFLGSGS 354
Query: 364 VLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYE 414
++H + T +N+ + GL K +P T FL+G ++ G+PPL F SK I
Sbjct: 355 IIHSMETVVGYSPDKSQNMVLMGGLRKHVPITKTFFLLGTLSLCGIPPLACFWSKDEILR 414
Query: 415 SSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFGRPSEK 452
S ++P+ IA T TA Y+ R+ L TF G ++
Sbjct: 415 DSWFYSPIFATIA-WATXXLTAFYMFRIYLLTFEGHSGKQ 453
>pir||T17469 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Vangueria
edulis chloroplast (fragment)
>gi|3955075|emb|CAA10216.1| (AJ130840) NADH
dehydrogenase [Vangueria edulis]
Length = 732
Score = 168 bits (420), Expect = 2e-40
Identities = 116/397 (29%), Positives = 202/397 (50%), Gaps = 34/397 (8%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
+F + + +D +IM ++IT V + ++YS YM HD +++ + MLG+
Sbjct: 80 NFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMAHDQAYLRFFAYMGFFSTSMLGLV 139
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 140 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPLAANACQKAFVTNRIGDFGLLLGILGFYWI 199
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ L + ++ ++ + L G + KS P+H+WL DA P+
Sbjct: 200 TGSFEFRDLFEIFNNLIYDNQVNSLFVTLCAGLVFAGAVAKSAQFPLHVWLPDA-MEGPT 258
Query: 245 SISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQED 304
ISA++ + GI+ +AR++ +F + P + +I +I IT+++G +A+ Q+D
Sbjct: 259 PISALIXAATMVARGIFLVARLL-PLF--IVIPYIMNFISLI-GIITVLLGATLALAQKD 314
Query: 305 MKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVV 364
+KR+LA+S++ Q+GY++L LG+G + A++H + HA KALLFL +G +
Sbjct: 315 IKRVLAFSTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSKALLFLGSGSI 363
Query: 365 LHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES 415
+H + ++N+ + GL K +P T FL+G ++ G+PPL+ F SK I
Sbjct: 364 IHSMEIIVGYSPYKSQNMVLMGGLTKHIPITKNTFLLGTLSLCGIPPLSCFWSKDEILND 423
Query: 416 SALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFGRPS 450
S L++ + IA TA TA Y+ R+ L TF G S
Sbjct: 424 SWLYSTIFAIIA-WATAGLTAFYMFRIYLLTFXGHLS 459
>pir||T12158 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Hydrolea
ovata chloroplast (fragment)
Length = 683
Score = 168 bits (420), Expect = 2e-40
Identities = 118/400 (29%), Positives = 193/400 (47%), Gaps = 36/400 (9%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V + ++YS YM HD G +++ + MLG+
Sbjct: 72 DFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMAHDQGYLRFFAYMSFFSTSMLGLV 131
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 132 TSSNLIQIYIFWELVGLCSYLLIGFWFTRPIAANACQKAFVTNRVGDFGLLLGILGFYWI 191
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ L + +E + + L G + KS P+H+WL DA P+
Sbjct: 192 TGSFEFRDLFEIFNSLIDKNEVNFVFVTLCAVLLFAGAVAKSAQFPLHVWLPDA-MEGPT 250
Query: 245 SISAMLSGLVIKIGGIYAIARVV-FSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQE 303
ISA++ + I+ +AR++ IF P I I IT+ +G +A+ Q+
Sbjct: 251 PISALIXXATMVAXXIFLVARLLPLFIFIPYIMN-----FISXIGIITVFLGATLALAQK 305
Query: 304 DMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGV 363
D+KR LA S++ Q+GY++L LG+G + A++H + HA KALLFL +G
Sbjct: 306 DIKRGLAISTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSKALLFLGSGS 354
Query: 364 VLHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYE 414
++H + T +N+ + GL K +P T FL+G ++ G+PPL F SK I
Sbjct: 355 IIHSMETVVGYSPDKSQNMVLMGGLRKHVPITKTFFLLGTLSLCGIPPLACFWSKDEILR 414
Query: 415 SSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFGRPSEK 452
S ++P+ IA T TA Y+ R+ L TF G ++
Sbjct: 415 DSWFYSPIFATIA-WATXXLTAFYMFRIYLLTFEGHSGKQ 453
>pir||T14236 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4 -
Synechococcus sp. (strain PCC 7002)
>gi|2232047|gb|AAB62185.1| (U97516) NADH dehydrogenase
subunit 4 [Synechococcus PCC7002]
Length = 498
Score = 167 bits (419), Expect = 3e-40
Identities = 136/499 (27%), Positives = 235/499 (46%), Gaps = 58/499 (11%)
Query: 4 LPFIIIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREVWSGGTIVYALGS 63
L F++ +PL G + ++L I AT+ + TL + S G ++
Sbjct: 2 LSFLLFLPLVG---IGAIALFPRPLTRIVATVFTVVTLAI---------SSGLLINLNLQ 49
Query: 64 ETPFGKADFP-------IRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYY 116
+ +F + VD ++++ + ++ +AI YS+ H L YY
Sbjct: 50 DAGMQYTEFHNWLSILGLNYNLGVDGLSLPLIVLNSLLTLVAI-YSIGESNHRPKL--YY 106
Query: 117 TLILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAG------IKYM 170
+LIL++ G+ G I ++ F++F EI I Y L+A W G + G + Y
Sbjct: 107 SLILLINSGITGALIANNLLLFFLFYEIELIPFYLLIAI----WGGEKKGYASTKFLIYT 162
Query: 171 FVGSLASSFVLLGIALLYGQYGTLTMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAP 230
+ L LGI L Q L ++ E T V I L + L G K P
Sbjct: 163 AISGLCVLAAFLGIVWL-SQSSNFDFENLTLENLEFNTKV--ILLTILLIGFGIKIPLVP 219
Query: 231 VHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIF---WPAINPATVGWIIIIF 287
+H WL DA+ A +++ +L G+ K+G Y + R +F W ++PA + +
Sbjct: 220 LHTWLPDAYVEANPAVTVLLGGVFAKLG-TYGLVRFGLQLFPDVWSTVSPA-----LAVI 273
Query: 288 ACITLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHT 347
++++ G+ A+ Q D+KR++AYSS+G +GYIL+ G E++L GA+
Sbjct: 274 GTVSVMYGSLAAIAQRDLKRMVAYSSIGHMGYILVSTAAGT--------ELSLLGAVAQM 325
Query: 348 VNHALMKALLFLVAGVVLHELGTRNLNELSGL---AKTMPKTTFAFLIGAAAIVGMPPLN 404
++H+L+ ALLF + G++ ++GTR+L+ L+GL + +P T+ ++ A G+P L
Sbjct: 326 ISHSLILALLFHLVGIIERKVGTRDLDVLNGLMNPVRGLPLTSSLLILAGMASAGIPGLV 385
Query: 405 GFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYVRVLF--TFFGRPSEKVMKAKDPGAT 462
GF +++L+++ S P+ II + TA Y +L T FGR A+
Sbjct: 386 GFVAEFLVFQGSFSRFPIPTLFCIIASGL-TAVYFVILLNRTCFGRLDSHTAYYPKVFAS 444
Query: 463 MLLPIFILVIAIIGMGLFP 481
+P L + I+ +GL P
Sbjct: 445 EKIPAIALTVIILFLGLQP 463
>pir||D70420 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoN2 -
Aquifex aeolicus >gi|2983796|gb|AAC07354.1| (AE000737)
NADH dehydrogenase I chain N [Aquifex aeolicus]
Length = 488
Score = 167 bits (419), Expect = 3e-40
Identities = 136/486 (27%), Positives = 236/486 (47%), Gaps = 46/486 (9%)
Query: 6 FIIIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREVWSGGTIVYALGSET 65
FI+++ F F++ + +KGK + + ++S+ VG + V I + +T
Sbjct: 22 FILLLLAFILFTLEL--FIKGKERRLVLNVVSY----VG---YFSVLMSLLIPWMYKGDT 72
Query: 66 PFGK-ADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILEL 124
+G + P+ + ++ F ++ L I + F + +S + + E YY L L L
Sbjct: 73 FYGNFTNDPLAVTVKI--FAVLITLAI--LPFASSYFSAKKSFYG---EFYYILAFTL-L 124
Query: 125 GMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGI 184
G+ +A T ++ YV LE++S+ Y L A + E E KY+ +G L+ + G
Sbjct: 125 GVFVLASTYNLIILYVALELVSVGFYILTALLRGSTEAKEGAFKYLILGGLSIALASYGA 184
Query: 185 ALLYGQYGTLTMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
A +Y G+L + + ++ + + L FL GL K GA P H W+ DA+ AP+
Sbjct: 185 AFMYIYSGSLDLREILTYQGKDIHYLV-LGLVFFLIGLAVKIGAVPFHYWVPDAYQGAPT 243
Query: 245 SISAMLSGLVIKIGGIYAIARVV------FSIFWPAINPATVGWIIIIFACITLIVGNAM 298
++A+++ V K+ + RV+ FS+ W TVG + A +T++ GN +
Sbjct: 244 PVTALMAS-VGKLAFFIPLVRVMPLVQEKFSLVWTI----TVG----VIAALTMLYGNLV 294
Query: 299 AVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLF 358
A+VQ+D+KRLLAYSS+ GYI+ G + V I + IY V +A+M A F
Sbjct: 295 ALVQKDVKRLLAYSSIAHSGYIMAGAAVAKV--------IGMKAVIYFLVAYAVMSAGAF 346
Query: 359 LVAGVVLHELGTRN-LNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSA 417
LV ++ +N + GL P FAF + A++G+PP GF K L++ + +
Sbjct: 347 LVLALMEKNPEWQNYMENFYGLRFNAPYIAFAFFVYMVALLGVPPTVGFVGKALVFMALS 406
Query: 418 LFNPL--LGAIAIIGTAFCTAAYVRVLFTFFGRPSEKVMKAKDPGATMLLPIFILVIAII 475
F+ L L I I+ A T Y+R++ + EK +++ +F L +A +
Sbjct: 407 -FDKLWWLAFIMILSAAISTGYYIRLVVVMYMHEREKEIRSAPSHLGEKFSLFALTLASV 465
Query: 476 GMGLFP 481
+G+ P
Sbjct: 466 LLGVLP 471
>pir||T14233 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Pinckneya
pubescens chloroplast (fragment)
>gi|3955024|emb|CAA10215.1| (AJ130839) NADH
dehydrogenase [Pinckneya pubescens]
Length = 732
Score = 167 bits (419), Expect = 3e-40
Identities = 130/469 (27%), Positives = 223/469 (46%), Gaps = 42/469 (8%)
Query: 4 LPFIII-IPLFGAFSMPIVSLLKGKAKEIWA---TIISFATLIVGIEVFREVWSGGTIVY 59
+PFI + IP+ + + + +W+ ++ +I I + + + +I
Sbjct: 11 IPFIPLPIPILIGLGLLLFPTATKNLRRMWSFQSVLLLSIVMIFSINLSIQQINSNSIYQ 70
Query: 60 ALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLI 119
+GS DF + + +D +IM ++IT V + ++YS YM HD +++ +
Sbjct: 71 YVGSWII--NNDFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMAHDQAYLRFFAYM 128
Query: 120 LILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSF 179
MLG+ + ++ Y+F E++ + SY L+ F A K +
Sbjct: 129 SFFTTSMLGLVTSSNLIQIYIFWELVGMCSYLLIGFWFTRPLAANACQKAFVTNRIGDFG 188
Query: 180 VLLGIALLYGQYGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHM 233
+LLGI Y G+ L + +E + + L G L KS P+H+
Sbjct: 189 LLLGILGFYWITGSFEFRDLFEIFNNLIYNNEVHFLFVTLCAGLVFSGALAKSAQFPLHV 248
Query: 234 WLADAHPAAPSSISAMLSGLVIKIGGIYAIARVV-FSIFWPAINPATVGWIIIIFACITL 292
WL DA P+ ISA++ + I+ +AR++ I P I + I + IT+
Sbjct: 249 WLPDA-MEGPTPISALIHAATMVXXXIFLVARLLPLFIVIPYIM-----YFISLIGIITV 302
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
++G +A+ Q+D+KR LAYS++ Q+GY++L LG+G + A++H + HA
Sbjct: 303 LLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMG-----------SYRSALFHLITHAY 351
Query: 353 MKALLFLVAGVVLHEL---------GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
KALLFL +G V+H + ++N+ + GL K +P T F +G ++ G+PPL
Sbjct: 352 SKALLFLGSGSVIHSMEPIVGYSPYKSQNMVLMGGLTKHVPITKNTFFLGTLSLCGIPPL 411
Query: 404 NGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFGRPS 450
F SK I S L++ ++ AI + TA TA Y+ R+ L TF G S
Sbjct: 412 ACFWSKDEILNDSWLYS-MIFAIIALATAGLTAFYMFRIYLLTFEGHLS 459
>emb|CAA76117.1| (Y16191) echA [Methanosarcina barkeri]
Length = 639
Score = 167 bits (418), Expect = 3e-40
Identities = 117/439 (26%), Positives = 213/439 (47%), Gaps = 26/439 (5%)
Query: 78 WEVDKFGAIMVLIITFVSFLAILYSLEYM------KHDTGLEKYYTLILILELGMLGIAI 131
+ +D +M+LI+ V IL++ YM +H + +Y + M G+ +
Sbjct: 117 FNIDPLAQLMILIVNIVGTAIILFATGYMDQYEEHRHLNRQKIFYFTMSFFLAAMNGLVM 176
Query: 132 TGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQY 191
+ + Y+F E+ ++ S+ L+++ D EGI G + + + + + +GI LL Y
Sbjct: 177 SDTLGWLYLFWELTTLCSFVLISYNMDE-EGINNGFRALSLNLVGGVAMSIGIILLATNY 235
Query: 192 GTLTMGYLAVKMSENPTIVAKIAL--ALFLGGLLFKSGAAPVHMWLADAHPAAPSSISAM 249
++ +A + +A +AL AL G KS P H WL A AP+ +SA+
Sbjct: 236 NISSLTGIATYAGTDAVALAALALPVALLCIGGFAKSAQMPFHSWLLGAM-VAPTPVSAL 294
Query: 250 LSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQEDMKRLL 309
L + G++ + ++V PA ++G I ++ T ++ +A+A+ Q + KR+L
Sbjct: 295 LHSSTMVNAGVFLVVKLV-----PAYANTSLGTAIAVYGSFTFVICSALALSQRNAKRVL 349
Query: 310 AYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVVLHELG 369
AYS++ +G I+ GIG +A+A ++ + HA+ K LLFL G + H +G
Sbjct: 350 AYSTIANLGLIIASAGIGT--------PLAVAASMMLILFHAISKGLLFLCTGEIEHTIG 401
Query: 370 TRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSALFNPLLGAIAII 429
+R++ ++SGL K P T +G +++ +PP +KW+ E +A NP++ ++
Sbjct: 402 SRDIEDMSGLIKKAPLLTSIAALGMVSML-LPPFGVLLTKWVSME-AASNNPVVIIFIVL 459
Query: 430 GTAFCTAAYVRVLFTFFGRPSEKVMKAKDPGATMLLPIFILVIAIIGMGLFPWQISDKFM 489
G+A T Y + L T +K T P+ +L ++IIG +F + I D F+
Sbjct: 460 GSALTTVYYSKWLGTILSTSMDKNAVPHKKLET-YFPLSVLGLSIIGTSIFIFSIYDYFI 518
Query: 490 VPAAKSLWDIMGYVISLMG 508
P + L + V G
Sbjct: 519 RPQVEILLKVAPAVTGQAG 537
>pir||T13785 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Chiococca
racemosa chloroplast (fragment)
>gi|3954789|emb|CAA10211.1| (AJ130835) NADH
dehydrogenase [Chiococca racemosa]
Length = 734
Score = 167 bits (418), Expect = 3e-40
Identities = 122/397 (30%), Positives = 197/397 (48%), Gaps = 34/397 (8%)
Query: 71 DFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIA 130
DF + + +D +IM ++IT V + ++YS YM HD +++ + MLG+
Sbjct: 80 DFSLEFGYLIDPLTSIMSILITTVGIMVLIYSDNYMTHDQAYLRFFAYMSFFSTSMLGLV 139
Query: 131 ITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQ 190
+ ++ Y+F E++ + SY L+ F A K + +LLGI Y
Sbjct: 140 TSSNLIQIYIFWELVGMCSYLLIGFWFTRPLAATACQKAFVTNRIGDFCLLLGILGFYWI 199
Query: 191 YGTLTMGYL------AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPS 244
G+ L + +E + + AL G + KS P+H+WL DA P+
Sbjct: 200 TGSFEFRDLFEIFNNLIYNNEVNFLFVTLCAALLFAGAIAKSAQFPLHVWLPDA-MEGPT 258
Query: 245 SISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQED 304
ISA++ + GI+ +AR++ +F I P + +I +I IT+++G +A+ Q+D
Sbjct: 259 PISALIXAATMVAXGIFLVARLL-PLF--IIIPYIMNFISLI-GVITVLLGATLALAQKD 314
Query: 305 MKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVV 364
+KR LAYS++ Q+GY++L LG+G + A++H + HA KALLFL AG V
Sbjct: 315 IKRGLAYSTMSQLGYMMLALGMG-----------SYRSALFHLITHAYSKALLFLGAGSV 363
Query: 365 LHELGT---------RNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES 415
+H + T +N+ + GL K +P T FL+G ++ G+ L F SK I
Sbjct: 364 IHSMETIVGYSPHKSQNMALMGGLTKHVPITKNTFLLGTLSLCGIXXLACFWSKDEILND 423
Query: 416 SALFNPLLGAIAIIGTAFCTAAYV-RV-LFTFFGRPS 450
S L++ IA TA TA Y+ R+ L TF G S
Sbjct: 424 SWLYSTTFAIIA-WATAGLTAFYMFRIYLLTFEGHLS 459
>pir||S38321 NADH dehydrogenase I chain nuoL - Escherichia coli
>gi|397909|emb|CAA48371.1| (X68301) NADH dehydrogenase
I, subunit nuoL [Escherichia coli]
Length = 613
Score = 165 bits (414), Expect = 1e-39
Identities = 136/486 (27%), Positives = 229/486 (46%), Gaps = 38/486 (7%)
Query: 1 MTWLPFIIIIPLFGAFSMPIVSLLKGKAKEIWATII-----SFATLIVGIEVFREVWSGG 55
M L II+PL G +++ +G+ E + I+ + A L+ + +
Sbjct: 1 MNMLALTIILPLIG---FVLLAFSRGRWSENVSAIVGVGSVALAALVTALSALISSLTAS 57
Query: 56 TIVYALGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKY 115
Y+ T DF I +D M+ ++T V FL +Y+ YM+ + G ++
Sbjct: 58 K-TYSQPLWTWMSVGDFNIGFNLVLDGLSLTMLSVVTGVGFLIHMYASWYMRGEEGYSRF 116
Query: 116 YTLILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSL 175
+ + M+ + + ++ Y+ E + + SY L+ F + + A +K V +
Sbjct: 117 FAYTNLFIASMVVLVLADNLLLMYLGWEGVGLCSYLLIGFYYTDPKNGAAAMKAFVVTRV 176
Query: 176 ASSFVLLGIALLYGQYGTLT---MGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVH 232
F+ + +LY + GTL M LA + + A + LGG + KS P+
Sbjct: 177 GDVFLRFALFILYNELGTLNFREMVELAPAHLADGNNMLMWATLMLLGGAVGKSAQLPLQ 236
Query: 233 MWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITL 292
WLADA A P+ +SA++ + G+Y IAR +F + V ++ I +TL
Sbjct: 237 TWLADA-MAGPTPVSALIHAATMVTAGVYLIAR-THGLF---LMTPEVLHLVGIVGAVTL 291
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
++ A+VQ D+KR+LAYS++ QIGY+ L LG+ A AI+H + HA
Sbjct: 292 LLAGFAALVQTDIKRVLAYSTMSQIGYMFLALGVQ-----------AWDAAIFHLMTHAF 340
Query: 353 MKALLFLVAGVVL----HELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLN-GFA 407
KALLFL +G V+ HE +N+ ++ GL K++P FL+G AA+ +P + GF
Sbjct: 341 FKALLFLASGSVILACHHE---QNIFKMGGLRKSIPLVYLCFLVGGAALSALPLVTAGFF 397
Query: 408 SKWLIYESSALFNPLLGAIAIIGTAFCTAAYV-RVLFTFFGRPSEKVMKAKDPGATMLLP 466
SK I + + +A + AF T+ Y R++F F E++ G T LP
Sbjct: 398 SKDEILAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIVF-HGKEQIHAHAVKGVTHSLP 456
Query: 467 IFILVI 472
+ +L+I
Sbjct: 457 LIVLLI 462
>pir||B70414 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoM1 -
Aquifex aeolicus >gi|2983743|gb|AAC07304.1| (AE000734)
NADH dehydrogenase I chain M [Aquifex aeolicus]
Length = 491
Score = 165 bits (414), Expect = 1e-39
Identities = 149/506 (29%), Positives = 237/506 (46%), Gaps = 58/506 (11%)
Query: 2 TWLPFIIIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREVWSGGTIVYAL 61
T L I +PL GA + ++ EI+A + A++++G V I L
Sbjct: 3 TLLNVAIFLPLVGALLVAVIR------NEIFAKV---ASILIGAVV-------ALISLVL 46
Query: 62 GSETPFGKADFPIR----------IVWEVDKFG-AIMVLIITFVSFLAILYSLEYMKHDT 110
F K F I + V G AI ++++T + FLA + K +
Sbjct: 47 FVNFDFSKKGFQFETYVPWIKTLGIGYHVGVDGMAISLILMTSILFLAAY--IWSWKIED 104
Query: 111 GLEKYYTLILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAF-RHDTWEGIEAGIKY 169
Y+ L L LE +G+ D+F FY+F E M I Y ++ F HD + A K+
Sbjct: 105 RPSLYFALFLALETACIGVFAALDLFLFYLFWEGMLIPMYFIIGFWGHD--RKVYAANKF 162
Query: 170 MFVGSLASSFVLLGIA--LLYGQY--GTLTMGYLAVKMSENPTIVAKIALALFLGGLLFK 225
S F+LLGIA L+YG + G ++ Y + P + IA LF G K
Sbjct: 163 FLYTFFGSLFLLLGIASILVYGYFETGKISFDYFFHLGLDYPLWLELIAFLLFGIGFAVK 222
Query: 226 SGAAPVHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIII 285
P H WL DAH AP++ S +L+G+++K+G Y R FS+ P A+ +I +
Sbjct: 223 IPMWPFHTWLPDAHVEAPTAGSVILAGVLLKMG-TYGFVR--FSL--PFFPEASKYYIPL 277
Query: 286 IF--ACITLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGA 343
IF + + +I MA+ Q MKRL+AYSS+ +G + LG + AL GA
Sbjct: 278 IFTLSVVAVIYAAMMAIAQTHMKRLIAYSSISHMGLVTLGT--------FAMNSDALNGA 329
Query: 344 IYHTVNHALMKALLFLVAGVVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPL 403
IY + H L A LFL AG + + + ++++L GLA+ +P TFAF + A + P
Sbjct: 330 IYLMIAHGLSSAALFLGAGFIYDRIHSYHMDDLGGLARYIPYFTFAFFLAVLAGIAFPGF 389
Query: 404 NGFASKWL----IYESSALFNPLLGAIAIIGTAFCTAAYVRVLFTFFGRPSEKV---MKA 456
F S++L I+E ++ + G ++G A+ + +V+ P E+V K
Sbjct: 390 ASFVSEFLILLGIFEKFPVWAFVAGIGMVLGAAYSLYMFRKVMLEEESIPEERVEKWKKL 449
Query: 457 KDPGATMLLPIFILVIAIIGMGLFPW 482
KD +P +++ + MG++P+
Sbjct: 450 KDLELHHAIPFALIIGMALVMGIYPY 475
>gi|11497458 NADH deydrogenase (ubiquinone), subunit 5 [Prototheca wickerhamii]
>gi|7432521|pir||T11917 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 5 - Prototheca wickerhamii
mitochondrion >gi|467849|gb|AAD12636.1| (U02970) NADH
deydrogenase (ubiquinone), subunit 5 [Prototheca
wickerhamii]
Length = 689
Score = 165 bits (413), Expect = 1e-39
Identities = 138/496 (27%), Positives = 228/496 (45%), Gaps = 45/496 (9%)
Query: 7 IIIIPLFGAFSMPIVSLLKG-KAKEIWATIISFATLIVGIEVFREVWSGGTIVYALGSET 65
++++PL + + G + + T F + ++ F EV G + ++
Sbjct: 18 VLLLPLLASIFAGLFGRYLGFRGATLLTTSSVFLSFVISCVAFYEVALSG-VTCSIEFMP 76
Query: 66 PFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELG 125
F F + D IM+L+IT +S L LYS+ YM+ D L ++ + + I
Sbjct: 77 WFLSEMFDASWGFYFDSLTVIMLLVITSISTLVHLYSISYMEADPHLPRFMSYLSIFTFF 136
Query: 126 MLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIA 185
ML + + + + E + +ASY L+ F + +A IK M V + + LG+
Sbjct: 137 MLMLVTSDNFLQMFFGWEGVGLASYLLINFWFTRLQASKASIKAMLVNRVGDFGLALGVM 196
Query: 186 LLYGQYGTL---TMGYLAVKMSENPTI--------VAKIALALFLGGLLFKSGAAPVHMW 234
+ + T+ T+ LA SE + + I + LF+G + KS +H W
Sbjct: 197 ATFSVFKTVDFYTVFALAAHQSEAVLVFCNVEFHALTVICILLFVGA-VGKSAQLGLHTW 255
Query: 235 LADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIV 294
L DA P+ +SA++ + G++ IAR S + A V ++ I +T
Sbjct: 256 LPDA-MEGPTPVSALIHAATMVTAGVFMIARC--SPLFEYAPKALV--VVAIVGAMTCFF 310
Query: 295 GNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMK 354
VVQ D+KR++AYS+ Q+GY++ GI G ++H +NHA K
Sbjct: 311 AATTGVVQNDLKRVIAYSTASQLGYMIFACGISQYTVG-----------VFHLMNHAFFK 359
Query: 355 ALLFLVAGVVLHELG-TRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLI- 412
ALLFL AG V+H L +++ ++ G+AK +P T IG+ +++G P L GF SK +I
Sbjct: 360 ALLFLSAGSVIHSLADQQDMRKMGGMAKLLPFTFAMMSIGSFSLIGFPFLTGFYSKDVIL 419
Query: 413 ------YESSALFNPLLGAIAIIGTAFCTAAYVRVLFTFFGRPS----EKVMKAKDPGAT 462
Y A F L G++ + AF + R+LF F P+ V A D
Sbjct: 420 EVAFARYTWDANFAYLFGSVCV---AFTSYYSFRLLFLTFIAPTNAYKSTVKIAHDAPFL 476
Query: 463 MLLPIFILVIAIIGMG 478
+ LP+F+L I I +G
Sbjct: 477 LALPLFLLSIGSIFVG 492
>pir||G81796 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N NMA2228
[imported] - Neisseria meningitidis (group A strain
Z2491) >gi|7380847|emb|CAB85439.1| (AL162758) NADH
dehydrogenase chain N [Neisseria meningitidis Z2491]
Length = 481
Score = 165 bits (413), Expect = 1e-39
Identities = 138/500 (27%), Positives = 234/500 (46%), Gaps = 51/500 (10%)
Query: 1 MTWLPFIIIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREVWSGGTIVYA 60
M +P I+++ L + + L K W + AT+ V V VW G+
Sbjct: 9 MPAMPEIVLLALL--VLLLLADLWVSDDKRRWTHYGALATVAVTAVVQLAVWEQGSTSSF 66
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEK--YYTL 118
G ++ D + +++ ++F +Y+ Y G+ K +YTL
Sbjct: 67 NG--------------MYIADGMSRLAKMVLYALTFALFVYARPY-NQVRGIFKGEFYTL 111
Query: 119 ILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASS 178
L LGM + G Y+ LE++S+A YAL+A R D+ EA +KY +G+LAS
Sbjct: 112 SLFALLGMGVMVSAGHFLTAYIGLELLSLALYALIALRRDSGFAAEAALKYFVLGALASG 171
Query: 179 FVLLGIALLYGQYGTLTM-GYLAVKMSENPT-IVAKIALALFLGGLLFKSGAAPVHMWLA 236
+L GI+++YG G+L G LA +E + K+ L + + FK GA P HMW+
Sbjct: 172 LLLYGISMVYGATGSLEFAGVLASSFNEEANEWLLKLGLVFIVVAVAFKLGAVPFHMWVP 231
Query: 237 DAHPAAPSSISAMLSGLVIKIGGIYAIARVVFS--IFWPAINPATVGWIII--IFACITL 292
D + AP+S++A+ +G IA VVF+ I + W ++ + A +L
Sbjct: 232 DVYHGAPTSVTAL-------VGTAPKIAAVVFAFRILVTGLGTVHHDWSLMFALLAAASL 284
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+VGN A++Q ++KR+LAYS+V +G+ILL G V + A +Y+ + +AL
Sbjct: 285 LVGNLAAIMQTNIKRMLAYSTVSHMGFILLAFMAGAVGF---------AAGLYYAITYAL 335
Query: 353 MKALLFLVAGVVLH-ELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKW- 410
M A F V V+ + N+++L+GL + F L+ ++ G+PPL GF +K+
Sbjct: 336 MAAAGFGVLMVLSDGDNECENISDLAGLNQHRVWLAFLMLLVMFSMAGIPPLMGFYAKFG 395
Query: 411 ----LIYESSALFNPLLGAIAIIGTAFCTAAYVRVLFTFFGRPSEKVMKAKDPGATMLLP 466
L+ + + +++IG + + F GR V + A LL
Sbjct: 396 VIMALLKQGYVWLSVFAVVMSLIGAFYYLRVVKVMYFDESGRARPTV--GGNNAAKFLLS 453
Query: 467 IFILVIAIIGMGLFPWQISD 486
+ L++ + G+ P + D
Sbjct: 454 VNALLLVL--WGIMPQTVID 471
>pir||B72619 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 APE1411
[similarity] - Aeropyrum pernix (strain K1)
>gi|5105094|dbj|BAA80408.1| (AP000061) 708aa long
hypothetical NADH dehydrogenase (ubiquinone) chain 5
[Aeropyrum pernix]
Length = 708
Score = 164 bits (412), Expect = 2e-39
Identities = 127/451 (28%), Positives = 218/451 (48%), Gaps = 58/451 (12%)
Query: 80 VDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIAITGDIFNFY 139
+D A+M L+++++S L +YS++YM+ D G +Y+ +I M+ + + ++ +
Sbjct: 97 IDGLAAVMSLVVSWISLLIAVYSIKYMEGDWGFGRYFFMISFFVGSMMLLVVADNLVLMF 156
Query: 140 VFLEIMSIASYALVAF----RHDTWEG---------------IEAGIKYMFVGSLASSFV 180
V E +ASYAL+ D W G + ++ + +
Sbjct: 157 VGWEGTGLASYALIGHWYTDEEDYWVGRPGRRVLGTPMFFEPSHSAVRAILFTRIGDIGF 216
Query: 181 LLGIALLYGQYGTLTMGYLA----VKMSENPTI-VAKIALALFLGGLLFKSGAAPVHMWL 235
L+GIA LY GTL++ LA V ++E V + L +F G L KS P H WL
Sbjct: 217 LIGIAALYLTAGTLSIPELASTAHVWIAEFAAQGVLPLILLIFTLGALAKSAQVPFHEWL 276
Query: 236 ADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPAT-------------VGW 282
A P+ +SA++ + G+Y + R I A+ + W
Sbjct: 277 VTAM-TGPTPVSALIHAATMVKAGVYFVLRFAPIIVAGALAAGAPEVLSGVGSYFTLIAW 335
Query: 283 IIIIFACITLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIG-----IVAYGSKV-- 335
I A +T ++ + MA+V +++K +LA+S+ Q+GY++L G ++A G +
Sbjct: 336 I----AVLTALLLSLMALVSDELKLILAFSTASQLGYMILAAAAGGVIASVLAGGEALEL 391
Query: 336 -GEIALAGAIYHTVNHALMKALLFLVAGVVLHELGTRNLNELSGLAKTMPKTTFAFLIGA 394
GE A+A + H V+HA+ KA LFL AG V+H +R ++ + G A+ M T AF +
Sbjct: 392 AGE-AVAAGLGHLVSHAVFKAALFLAAGWVIHAAHSRFIDNMGGFARYMKLTAAAFWLAG 450
Query: 395 AAIVGMPPLNGFASKWLIYESSALFNPLLGAIAIIGTAFCTAAY-VRVLFTFFGRPSEKV 453
++ G+PPL+GF +K + + P++G +A + TA TAAY R++ F P +
Sbjct: 451 LSLAGVPPLSGFFTKEEVVAIAYKAEPVIGGLAAL-TALLTAAYTARMIIRVFHLPPYEE 509
Query: 454 MKAKD-----PGATMLLPIFILVIAIIGMGL 479
+ D ML+P IL +A + +G+
Sbjct: 510 KSSGDKHLHEAPPLMLVPYTILALASLALGI 540
>pir||F81220 NADH dehydrogenase I, N chain NMB0259 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225482|gb|AAF40713.1| (AE002382) NADH dehydrogenase
I, N subunit [Neisseria meningitidis MC58]
Length = 480
Score = 164 bits (412), Expect = 2e-39
Identities = 139/499 (27%), Positives = 235/499 (46%), Gaps = 50/499 (10%)
Query: 1 MTWLPFIIIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREVWSGGTIVYA 60
M +P I+++ L + + L K W + AT+ V V VW G+
Sbjct: 9 MPAMPEIVLLSLL--VLLLLADLWVSDDKRPWTHYGALATVAVTAVVQLAVWEQGSTSSF 66
Query: 61 LGSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEK--YYTL 118
G ++ D + +++ ++F +Y+ Y G+ K +YTL
Sbjct: 67 NG--------------MYIADGMSRLAKMVLYALTFALFVYAKPY-NQVRGIFKGEFYTL 111
Query: 119 ILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASS 178
L LGM + G Y+ LE++S+A YAL+A R D+ EA +KY +G+LAS
Sbjct: 112 SLFALLGMSVMVSAGHFLTAYIGLELLSLALYALIALRRDSGFAAEAALKYFVLGALASG 171
Query: 179 FVLLGIALLYGQYGTLTM-GYLAVKMSENPT-IVAKIALALFLGGLLFKSGAAPVHMWLA 236
+L GI+++YG G+L G LA +E + K+ L + + FK GA P HMW+
Sbjct: 172 LLLYGISMVYGATGSLEFAGVLASSFNEEANEWLLKLGLVFIVVAVAFKLGAVPFHMWVP 231
Query: 237 DAHPAAPSSISAMLSGLVIKIGGIYAIARVVFS--IFWPAINPATVGWIII--IFACITL 292
D + AP+S++A+ +G IA VVF+ I + W ++ + A +L
Sbjct: 232 DVYHGAPTSVTAL-------VGTAPKIAAVVFTFRILVTGLGTVHHDWSLMFALLAAASL 284
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+VGN A++Q ++KR+ AYS+V +G+ILL G V + A +Y+ + +AL
Sbjct: 285 LVGNLAAIMQTNIKRMFAYSTVSHMGFILLAFMAGAVGF---------AAGLYYAITYAL 335
Query: 353 MKALLFLVAGVVLH-ELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKW- 410
M A F V V+ + N+++L+GL + F L+ ++ G+PPL GF +K+
Sbjct: 336 MAAAGFGVLMVLSDGDNECENISDLAGLNQHRVWLAFLMLLVMFSMAGIPPLMGFYAKFG 395
Query: 411 LIYESSALFNPLLGAIAIIGTAFCTAAYVRVL-FTFFGRPSEKVMKAKDPGATMLLPI-- 467
+I + L A+I + Y+RV+ +F P + A +L +
Sbjct: 396 VIMALLKQGHVWLSVFAVIMSLIGAFYYLRVVKVIYFDVPDHDQPVGSNYAAKFVLTVNA 455
Query: 468 FILVIAIIGMGLFPWQISD 486
F+L++ G+ P + D
Sbjct: 456 FLLLL----WGIMPQTVID 470
>pir||H81796 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain M NMA2229
[imported] - Neisseria meningitidis (group A strain
Z2491) >gi|7380848|emb|CAB85440.1| (AL162758) NADH
dehydrogenase chain M [Neisseria meningitidis Z2491]
Length = 498
Score = 164 bits (412), Expect = 2e-39
Identities = 113/409 (27%), Positives = 196/409 (47%), Gaps = 22/409 (5%)
Query: 80 VDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIAITGDIFNFY 139
VD + +++ F++ L +L E ++ +Y LI+ + G D FY
Sbjct: 82 VDGISVLFIILNAFITLLVVLAGWEVIQKRPA--QYMAAFLIMSGLINGAFAAQDAILFY 139
Query: 140 VFLEIMSIASYALVAFRHDTWEG---IEAGIKYMFVGSLASSFVLLGIALLYGQYGTLTM 196
VF E M I Y ++ W G + A +K + S +L+ + LY Q G+ ++
Sbjct: 140 VFFEGMLIPLYLIIG----VWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYYQTGSFSI 195
Query: 197 GYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPSSISAMLSGLVIK 256
+ + P V ++ A F K PVH WL DAH AP+ S +L+ + +K
Sbjct: 196 VDFQ-NIKQIPLGVQQLLFAAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLK 254
Query: 257 IGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQEDMKRLLAYSSVGQ 316
+G Y R + I A +II+ + I +I +A+VQ DMK+L+AYSS+
Sbjct: 255 LGA-YGFLRFILPIMPDAARYFAP--VIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISH 311
Query: 317 IGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVVLHELGTRNLNEL 376
+G++ LG+ + + ++ + AL GAI ++H + A +F+ GV+ L TRN+ +
Sbjct: 312 MGFVTLGMFLFV---NGQLNDWALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADY 368
Query: 377 SGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSALFNPLLGAIA----IIGTA 432
G+ MPK ++ A G+P +GF ++++ + N +GA+A I G +
Sbjct: 369 GGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGAS 428
Query: 433 FCTAAYVRVLFTFFGRPSEKVMKAKDPGATMLLPIFILVIAIIGMGLFP 481
+ Y RV+F + V + KD + +L +A++GMGL+P
Sbjct: 429 YTLWMYKRVIFGAI--HNSHVAEMKDINCREFAILAVLAVAVLGMGLYP 475
>gi|7525007 NADH dehydrogenase subunit 5 [Dictyostelium discoideum]
>gi|11254382|pir||T43784 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 5 [similarity] - slime mold
(Dictyostelium discoideum) mitochondrion
>gi|4958910|dbj|BAA78087.1| (AB000109) NADH
dehydrogenase subunit 5 [Dictyostelium discoideum]
>gi|5442404|gb|AAD43330.1|AF155828_1 (AF155828) NADH
dehydrogenase subunit 5 [Dictyostelium discoideum]
Length = 670
Score = 164 bits (411), Expect = 2e-39
Identities = 125/522 (23%), Positives = 240/522 (45%), Gaps = 63/522 (12%)
Query: 8 IIIPLFGAFSMPIVSLLKGKAKEIWATI-----ISFATLIVGIEVFREVWSGGTIVYALG 62
+I+PL G+ I G I + + ++L +G E+ + + + LG
Sbjct: 6 LILPLIGSIITGIFGHKLGNRISIKIAVGCMMLTAISSLYIGYEI---LLCNSVVHFKLG 62
Query: 63 SETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILIL 122
+ G + +++ D +IM+++IT +S + LYS++YMK D ++++ + +
Sbjct: 63 TWMQVGSLNVEYGLLY--DSLTSIMIIVITCISSMVHLYSMDYMKEDPHKTRFFSYLSLF 120
Query: 123 ELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLL 182
M+ + + + E + I SY L+ F + + ++ +K + + +
Sbjct: 121 TFFMMLLVTADNFVQLFFGWEGVGIMSYLLINFWYTRLQANKSALKAVILNRFGDFGLFF 180
Query: 183 GIALLYGQYGTL---------------TMGYLAVKMSENPTIVAKIALALFLGGLLFKSG 227
GI L++ + ++ T+ L +++ I + I + G++ KS
Sbjct: 181 GILLVFLVFKSVDFSVIFTIAPFITEYTINLLGYEVNAITLIGSFIVI-----GVVGKSA 235
Query: 228 AAPVHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIF 287
+HMWL DA P+ +SA+L + G++ + R + + T+ I+ I
Sbjct: 236 QLGLHMWLPDA-MEGPTPVSALLHAATMVTAGVFLVLRTSPLLSY----SITILNILTII 290
Query: 288 ACITLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHT 347
+T + + +VQ D+KR++AYS+ Q+GY++ G+ + +IYH
Sbjct: 291 GALTTLFATTIGIVQNDIKRVIAYSTCSQLGYMIFACGL-----------LNYNASIYHL 339
Query: 348 VNHALMKALLFLVAGVVLHELG-TRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGF 406
HA KALLFL AG V+H L +++ ++ GL MP T LIG A+ G P L+G+
Sbjct: 340 TTHAFFKALLFLSAGSVIHGLNDEQDMRKMGGLVNLMPLTYQCMLIGTLALTGFPFLSGY 399
Query: 407 ASKWLIYESS-------ALFNPLLGAIAIIGTAFCTAAYVRVLFTFFGRPS---EKVMKA 456
SK +I E+S F ++G +A GT F ++ ++ TFF +P + +
Sbjct: 400 YSKDIILETSYATYYWEGTFAAIIGYVAAFGTTF--YSFRLLILTFFNKPRMQYKTIAGV 457
Query: 457 KDPGATMLLPIFILVIAIIGMGLFPWQISDKFMVPAAKSLWD 498
+ M++P+ IL + I +G ++ F V +W+
Sbjct: 458 HEASTNMVIPLVILALCSIFIG----YVTKDFFVGLGTPVWN 495
>gb|AAF72053.1|AF204057_8 (AF204057) NADH dehydrogenase subunit 5 [Scenedesmus obliquus]
Length = 650
Score = 164 bits (411), Expect = 2e-39
Identities = 137/481 (28%), Positives = 227/481 (46%), Gaps = 30/481 (6%)
Query: 8 IIIPLFGAFSMPIVSLLKGKAKEIWATIISFAT-LIVGIEVFREVWS-GGTIVYALGSET 65
++ P G+ ++ G TI+ T ++ +F E+ S G +V +LGS
Sbjct: 6 VLAPFLGSALAGLMGRWLGARGSGCVTILGMGTSTLLSYVIFYEIRSMGSAVVLSLGSW- 64
Query: 66 PFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELG 125
FG + + D A M++ + VSF +YSL YM++D L ++ + + +
Sbjct: 65 -FGAHTVTVEWLLCFDPLSAAMMVTVCTVSFCVHIYSLGYMQNDPHLPRFLSYLSLFTGS 123
Query: 126 MLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIA 185
ML + D+ V E++ + SY L+ F + K M V ++ + +L G+
Sbjct: 124 MLLLVTANDLLTLMVGWEMIGVCSYLLIGFWFHRLSRTKRAQKAMLVNRVSDTVLLFGLF 183
Query: 186 LLYGQYGTLTMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPSS 245
L + G+ T L S + I AL LGG L KS +H+WLADA P+
Sbjct: 184 LCWWYLGS-TDTSLLTATSTSAYYADWICFAL-LGGALGKSAQVGLHVWLADA-MEGPTP 240
Query: 246 ISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQEDM 305
+SA++ + GI+ IAR + W A +++ +T ++ M +VQ D+
Sbjct: 241 VSALIHAATLVTAGIFLIART--NRIWECSVYART--VLLWVGAVTSLMRRTMGLVQNDV 296
Query: 306 KRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVVL 365
KR++AYS+ Q+GY+++ L + YG A+YH + HA K LLFL AGVV+
Sbjct: 297 KRVIAYSTCSQLGYMVVALSLS--HYGL---------AMYHLMTHACFKRLLFLGAGVVI 345
Query: 366 HELG-TRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSAL---FNP 421
H +++ G ++P L+G+ +++G P L G+ SK I E S
Sbjct: 346 HACADVQDMRRSGGAHASLPLAWTCLLLGSLSLLGWPFLAGYYSKDAILELSWATPGSAA 405
Query: 422 LLGAIAIIGTAFCTAAY-VRVLFTFFGRPSE-KVMKAKDPGA--TMLLPIFILVIAIIGM 477
LG + ++ A T+AY RVL F P+ + + + PG TM +P+ IL + I
Sbjct: 406 ALGHLILMTVACLTSAYSFRVLIAVFYAPNNARKSEVRTPGVPLTMAVPLCILALGSIFR 465
Query: 478 G 478
G
Sbjct: 466 G 466
>sp|O86350|NUOL_MYCTU NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
L) >gi|7432513|pir||B70946 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain nuoL - Mycobacterium
tuberculosis (strain H37RV) >gi|3242279|emb|CAA16667.1|
(AL021646) nuoL [Mycobacterium tuberculosis]
Length = 633
Score = 163 bits (409), Expect = 4e-39
Identities = 140/503 (27%), Positives = 231/503 (45%), Gaps = 59/503 (11%)
Query: 2 TWLPFIIIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLI----VGIEVFREVWSGGTI 57
TWL ++ +PL GA + L G+ + W ++ A + VG + ++ +
Sbjct: 10 TWL--LVALPLAGA----AILLFGGRRTDAWGHLLGCAAALAAFGVGAMLLADMLGRDGL 63
Query: 58 VYALGSET----PFG--KADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTG 111
A+ + P G + DF ++I D+ VL+I+ V L +YS+ YM D
Sbjct: 64 ERAIHQQVFTWIPAGGLQVDFGLQI----DQLSMCFVLLISGVGSLIHIYSVGYMAEDPD 119
Query: 112 LEKYYTLILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMF 171
+++ + + ML + + + YV E + +ASY L+ F + A K
Sbjct: 120 RRRFFGYLNLFLASMLLLVVADNYVLLYVGWEGVGLASYLLIGFWYHKPSAATAAKKAFV 179
Query: 172 VGSLASSFVLLGIALLYGQYGTLT-MGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAP 230
+ + + + +G+ L + +GTL+ G A + + ++ I L + LG KS P
Sbjct: 180 MNRVGDAGLAVGMFLTFSTFGTLSYAGVFAGVPAASRAVLTAIGLLMLLGACA-KSAQVP 238
Query: 231 VHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPA-TVGWIIIIFAC 289
+ WL DA P+ +SA++ + G+Y I R P N A T ++I
Sbjct: 239 LQAWLGDA-MEGPTPVSALIHAATMVTAGVYLIVR-----SGPLYNLAPTAQLAVVIVGA 292
Query: 290 ITLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVN 349
+TL+ G + ++D+KR LA S++ QIGY++L G+G Y A AI H +
Sbjct: 293 VTLLFGAIIGCAKDDIKRALAASTISQIGYMVLAAGLGPAGY---------AFAIMHLLT 343
Query: 350 HALMKALLFLVAGVVLHEL-GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFAS 408
H KA LFL +G V+H + +++ GL +P T F + AI+G+PP GF S
Sbjct: 344 HGFFKAGLFLGSGAVIHAMHEEQDMRRYGGLRAALPVTFATFGLAYLAIIGVPPFAGFFS 403
Query: 409 KWLIYESS----ALFNPLLGAIAIIGTAFCTAAYVR--VLFTFFGRPSEKVMKAKDPG-- 460
K I E++ + LLG A++G A TA Y+ +L TFFG K PG
Sbjct: 404 KDAIIEAALGAGGIRGSLLGGAALLG-AGVTAFYMTRVMLMTFFGE------KRWTPGAH 456
Query: 461 -----ATMLLPIFILVIAIIGMG 478
A M P+ +L + + G
Sbjct: 457 PHEAPAVMTWPMILLAVGSVFSG 479
>pir||E81220 NADH dehydrogenase I, M chain NMB0258 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225481|gb|AAF40712.1| (AE002382) NADH dehydrogenase
I, M subunit [Neisseria meningitidis MC58]
Length = 498
Score = 163 bits (409), Expect = 4e-39
Identities = 113/409 (27%), Positives = 195/409 (47%), Gaps = 22/409 (5%)
Query: 80 VDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIAITGDIFNFY 139
VD + +++ F++ L +L E ++ +Y LI+ + G D FY
Sbjct: 82 VDGISVLFIILNAFITLLVVLAGWEVIQKRPA--QYMAAFLIMSGLINGAFAAQDAILFY 139
Query: 140 VFLEIMSIASYALVAFRHDTWEG---IEAGIKYMFVGSLASSFVLLGIALLYGQYGTLTM 196
VF E M I Y ++ W G + A +K + S +L+ + LY Q G+ ++
Sbjct: 140 VFFEGMLIPLYLIIG----VWGGPRRVYASVKLFLYTLMGSLLMLVAMVYLYYQTGSFSI 195
Query: 197 GYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPSSISAMLSGLVIK 256
+ + P V ++ F K PVH WL DAH AP+ S +L+ + +K
Sbjct: 196 VDFQ-NIEQIPLGVQQLLFVAFFLSFAVKVPMFPVHTWLPDAHVEAPTGGSMVLAAITLK 254
Query: 257 IGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQEDMKRLLAYSSVGQ 316
+G Y R + I A +II+ + I +I +A+VQ DMK+L+AYSS+
Sbjct: 255 LGA-YGFLRFILPIMPDAARYFAP--VIIVLSLIAVIYIGMVALVQTDMKKLVAYSSISH 311
Query: 317 IGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVVLHELGTRNLNEL 376
+G++ LG+ + + ++ + AL GAI ++H + A +F+ GV+ L TRN+ +
Sbjct: 312 MGFVTLGMFLFV---DGQLDDWALKGAIIQMISHGFVSAAMFMCIGVMYDRLHTRNIADY 368
Query: 377 SGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSALFNPLLGAIA----IIGTA 432
G+ MPK ++ A G+P +GF ++++ + N +GA+A I G +
Sbjct: 369 GGVVNVMPKFAAFMMLFGMANAGLPATSGFVGEFMVIMGAVKVNFWVGALAAMTLIYGAS 428
Query: 433 FCTAAYVRVLFTFFGRPSEKVMKAKDPGATMLLPIFILVIAIIGMGLFP 481
+ Y RV+F P V + +D + IL +A++GMGL+P
Sbjct: 429 YTLWMYKRVIFGAIHNP--HVAEMQDINCREFAILAILAVAVLGMGLYP 475
>pir||E83514 probable NADH dehydrogenase PA1056 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946970|gb|AAG04445.1|AE004537_10 (AE004537)
probable NADH dehydrogenase [Pseudomonas aeruginosa]
Length = 499
Score = 163 bits (408), Expect = 5e-39
Identities = 142/486 (29%), Positives = 235/486 (48%), Gaps = 43/486 (8%)
Query: 3 WLPFIIIIPLFGAFSMPIVSLLKGKAKEIW----ATIISFATLIVGIEVFREVWSGGTIV 58
WL I++PLF SLL E W + + + A + + + + R SG V
Sbjct: 4 WLILPILLPLFAG------SLLLLPLAERWQRGLSLLAALALIPLSLLLIRTAASGDLSV 57
Query: 59 YALGS-ETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYT 117
YALG+ PFG IV +D+ A+M+L + A++Y+L D + ++
Sbjct: 58 YALGNWAAPFG-------IVLMLDRLAALMLLATAVLGSAALIYALR--GEDRLGKHFHA 108
Query: 118 LILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLAS 177
L LG+ G +TGD+FN +VF EI+ IASYAL+ E + +G+ Y+ + + S
Sbjct: 109 LFQFQLLGINGAFLTGDLFNLFVFFEILLIASYALLLHGGGA-ERVRSGLHYVILNLVGS 167
Query: 178 SFVLLGIALLYGQYGTLTMGYLAVKM----SENPTIVAKIALALFLGGLLFKSGAAPVHM 233
+F L+ + LYG GTL M +A K+ +E ++A L L L K+ P++
Sbjct: 168 AFFLIAVGTLYGLTGTLNMADMAQKIAMADAERAPLLAAAGL-LLLVVFALKAALLPLYF 226
Query: 234 WLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPA---INPATVGWIIIIFACI 290
WL A+ A + ++A+ + ++ K+ GIY+I RV +F A + W+ + A
Sbjct: 227 WLPRAYATASAPVAALFA-IMTKV-GIYSILRVYTLVFGDAAGELANLAQAWLWPL-ALA 283
Query: 291 TLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNH 350
TL +G A+ ++ LLAY V G +L G+ +G E ALA ++Y+ ++
Sbjct: 284 TLGLGAIGALAARTLQGLLAYLVVVSAGTLLAGVALG--------SERALAASLYYLLHS 335
Query: 351 ALMKALLFLVAGVVLHELGTRNLNELSGLAKTMPKTT-FAFLIGAAAIVGMPPLNGFASK 409
+ LFL+A +V + G + + + G A P+ AF IGA A+ G+PPL+GF K
Sbjct: 336 TWIAGGLFLLADLVARQRGDKAGDLVQGPALQNPRLLGGAFFIGAIAVAGLPPLSGFFGK 395
Query: 410 WLIYESSALFNPLLGAIAII--GTAFCTAAYVRVLFTFFGRPSEKVMKAKDPGATMLLPI 467
++ +S A + L +++ A R T F R V+ + + L
Sbjct: 396 VMLLQSVAPGSQALALWSVVLGSGLVALVALSRAGSTLFWRTGHTVLGSAELDHGRLFAC 455
Query: 468 FILVIA 473
+L+ A
Sbjct: 456 ILLLSA 461
>sp|Q9PMA7|NUOL_CAMJE NADH DEHYDROGENASE I CHAIN L (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
L) >gi|11254389|pir||F81251 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain L Cj1568c [similarity]
- Campylobacter jejuni (strain NCTC 11168)
>gi|6968985|emb|CAB73556.1| (AL139079) NADH
dehydrogenase I chain L [Campylobacter jejuni]
Length = 596
Score = 162 bits (407), Expect = 6e-39
Identities = 124/411 (30%), Positives = 204/411 (49%), Gaps = 30/411 (7%)
Query: 78 WEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIAITGDIFN 137
+++D M+ ++ V+ YS+ YM HD G K++ + + ML + ++ +
Sbjct: 71 FDIDAISLTMMSVVGIVATCVHFYSIFYMAHDEGFNKFFAYLGLFVFSMLFLVMSDNFLG 130
Query: 138 FYVFLEIMSIASYALVAF--RHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQYGTLT 195
+V E + + S+ L+ F ++DT+ A + + +A +LLGI LY Q GTL
Sbjct: 131 LFVGWEGVGLCSWLLIGFWYKNDTYSF--AANEAFIMNRIADLGMLLGIFWLYLQAGTLK 188
Query: 196 MGY---LAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPSSISAMLSG 252
+A + N I+ IA LF+G + KS P H WLADA A P+ +SA++
Sbjct: 189 YDEVFSMAQSLDHNALIL--IATCLFIGAM-GKSAQFPFHTWLADAM-AGPTPVSALIHA 244
Query: 253 LVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQEDMKRLLAYS 312
+ G+Y + R S + + V +II + I +MA+V D+KR++AYS
Sbjct: 245 ATMVTAGVYLVIRA--STLYDLV--PEVSYIIALLGAFVAIFAASMALVVRDLKRIIAYS 300
Query: 313 SVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVVLHELGTR- 371
++ Q+GY+ + G+G AYG A++H HA K+LLFL AG V+H + +
Sbjct: 301 TLSQLGYMFVAAGLG--AYGI---------ALFHLATHAFFKSLLFLGAGNVMHAMNDKL 349
Query: 372 NLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSAL-FNPLLGAIAIIG 430
++ ++ GL K + T IG+ A+ G+ P GF SK LI S + F+ + + +I
Sbjct: 350 DIKKMGGLFKPLKITAILMCIGSLALAGIYPFAGFFSKDLILGYSFISFHHGIFLVLLI- 408
Query: 431 TAFCTAAY-VRVLFTFFGRPSEKVMKAKDPGATMLLPIFILVIAIIGMGLF 480
AF TA Y R+L F P+ + LL + L++ I G F
Sbjct: 409 AAFLTAFYSFRLLMLVFFTPARHDEHPHEASKIALLAMSPLMVLAIIAGFF 459
>gi|11467931 NADH dehydrogenase subunit 5 [Scenedesmus obliquus]
>gi|7711053|emb|CAB90377.1| (X17375) NADH dehydrogenase
subunit 5 [Scenedesmus obliquus]
Length = 650
Score = 162 bits (407), Expect = 6e-39
Identities = 137/481 (28%), Positives = 225/481 (46%), Gaps = 30/481 (6%)
Query: 8 IIIPLFGAFSMPIVSLLKGKAKEIWATIISFAT-LIVGIEVFREVWS-GGTIVYALGSET 65
++ P G+ ++ G TI+ T ++ +F E+ S G +V +LGS
Sbjct: 6 VLAPFLGSALAGLMGRWLGARGSGCVTILGMGTSTLLSYVIFYEIRSMGSAVVLSLGSW- 64
Query: 66 PFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELG 125
FG + + D A M++ + VSF +YSL YM++D L ++ + + +
Sbjct: 65 -FGAHTVTVEWLLCFDPLSAAMMVTVCTVSFCVHIYSLGYMQNDPHLPRFLSYLSLFTGS 123
Query: 126 MLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIA 185
ML + D+ V E++ + SY L+ F + K M V ++ + +L G+
Sbjct: 124 MLLLVTANDLLTLMVGWEMIGVCSYLLIGFWFHRLSRTKRAQKAMLVNRVSDTVLLFGLF 183
Query: 186 LLYGQYGTLTMGYLAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPSS 245
L + G+ T L S + I AL LGG L KS +H+WLADA P
Sbjct: 184 LCWWYLGS-TDTSLLTATSTSAYYADWICFAL-LGGALGKSAQVGLHVWLADA-MEGPXP 240
Query: 246 ISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQEDM 305
+SA++ + GI+ IAR + W A +++ +T ++ M +VQ D+
Sbjct: 241 VSALIHAATLVTAGIFLIART--NRIWECSVYART--VLLWVGAVTSLMRRTMGLVQNDV 296
Query: 306 KRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVVL 365
KR++AYS+ Q+GY+++ L + YG A+YH + HA K LLFL AGVV+
Sbjct: 297 KRVIAYSTCSQLGYMVVALSLS--HYGL---------AMYHLMTHACFKRLLFLGAGVVI 345
Query: 366 HELG-TRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSAL---FNP 421
H +++ G ++P L G+ +++G P L G+ SK I E S
Sbjct: 346 HACADVQDMRRSGGAHASLPLAWTCLLXGSLSLLGWPFLAGYYSKDAILELSWATPGSAA 405
Query: 422 LLGAIAIIGTAFCTAAY-VRVLFTFFGRPSE-KVMKAKDPGA--TMLLPIFILVIAIIGM 477
LG + ++ A T+AY RVL F P+ + + + PG TM +P+ IL + I
Sbjct: 406 ALGHLILMTVACLTSAYSFRVLIAVFYAPNNARKSEVRTPGVPLTMAVPLCILALGSIFR 465
Query: 478 G 478
G
Sbjct: 466 G 466
>sp|Q10880|Y051_MYCTU HYPOTHETICAL 65.6 KD PROTEIN RV0083 >gi|7446811|pir||D70850
probable oxidoreductase subunit - Mycobacterium
tuberculosis (strain H37RV) >gi|3261515|emb|CAA16264.1|
(AL021428) hypothetical protein Rv0083 [Mycobacterium
tuberculosis]
Length = 640
Score = 162 bits (405), Expect = 1e-38
Identities = 130/441 (29%), Positives = 200/441 (44%), Gaps = 32/441 (7%)
Query: 79 EVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIAITGDIFNF 138
E+D+ G + + V+ Y + Y++ + ++ + ML + G + F
Sbjct: 48 ELDRLGGFFMALTGAVAAPVGCYLIGYVRREHLGRVPMAVVPLFVAAMLLVPAAGSVTTF 107
Query: 139 YVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQYGTLTMGY 198
+ E+M+IAS LV H + AG+ Y + L +L+G+ +L G+
Sbjct: 108 LLAWELMAIASLILVLSEHARPQVRSAGLWYAVMTQLGFIAILVGLVVLAAAGGSDRFAG 167
Query: 199 LAVKMSENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPSSISAMLSGLVIKIG 258
L V L L G K+G P+H WL AHP APS +SA++S ++ +G
Sbjct: 168 LGAVCDG----VRAAVFMLTLVGFGSKAGLVPLHAWLPRAHPEAPSPVSALMSAAMVNLG 223
Query: 259 GIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQEDMKRLLAYSSVGQIG 318
IY I R + P P G ++ + + G A V D+KRLLAYS+ +G
Sbjct: 224 -IYGIVRFDLQLLGPG--PRWWGLALLAVGGTSALYGVLQASVAADLKRLLAYSTTENMG 280
Query: 319 YILLGLGIGIV-----AYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVVLHELGTRNL 373
I L LG + AYG IA A A+ H + HA K+L F+ AG VL G R+L
Sbjct: 281 LITLALGAATLFADTGAYGP--ASIAAAAAMLHMIAHAAFKSLAFMAAGSVLAATGLRDL 338
Query: 374 NELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYES-----------SALFNPL 422
+ L GLA+ MP TT F + A G+P GF S+WL+ +S AL PL
Sbjct: 339 DLLGGLARRMPATTVFFGVAALGACGLPLGAGFVSEWLLVQSLIHAAPGHDPIVALTTPL 398
Query: 423 LGAIAIIGTAFCTAAYVRVL-FTFFGRP-SEKVMKAKDPGATMLLPIFI-----LVIAII 475
+ + T AA + F RP S + A++ A+M + I LV+A+
Sbjct: 399 AVGVVALATGLSVAAMTKAFGIGFLARPRSTQAEAAREAPASMRAGMAIAAGACLVLAVA 458
Query: 476 GMGLFPWQISDKFMVPAAKSL 496
+ + P +PAA+++
Sbjct: 459 PLLVAPMVRRAAATLPAAQAV 479
>gi|11467867 subunit 4 of NADH-plastoquinoneoxidoreductase [Nephroselmis
olivacea] >gi|5880796|gb|AAD54889.1|AF137379_112
(AF137379) subunit 4 of NADH-plastoquinoneoxidoreductase
[Nephroselmis olivacea]
Length = 500
Score = 161 bits (403), Expect = 2e-38
Identities = 141/508 (27%), Positives = 234/508 (45%), Gaps = 65/508 (12%)
Query: 3 WLPFIIIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREVWSGGTIVYALG 62
WL I++ PL + ++P + KG T + + L VG+ F I Y G
Sbjct: 6 WLSTIVLFPLLASLAIPWLPDRKG-------TTVRWYALGVGLIDF------SLIAYMFG 52
Query: 63 SETPFGKAD--FPIRIVW----------EVDKFGAIMVLIITFVSFLAILYSLEYMKHDT 110
F + F I W VD +VL+ F++ LA L + K+
Sbjct: 53 RYYDFEQTSLQFVEDITWIDRLHLHWSLGVDGLSMPLVLLTGFITTLATLAAWPVTKNP- 111
Query: 111 GLEKYYTLILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEG---IEAGI 167
+Y L+L + G LG+ + D+ F++ E+ I Y LV+ W G + A
Sbjct: 112 --RLFYFLMLAMYTGQLGVFVVQDLLLFFLMWELELIPVYLLVS----CWGGKKRLYAAT 165
Query: 168 KYMFVGSLASSFVLLGIALL--YGQYG-TLTMGYLAVKMSENPTIVAKIALALFLGGLL- 223
K++ +L S F+LLG + G G T M LA + P + + L+ G L+
Sbjct: 166 KFILYTALGSIFILLGALTMPFMGIQGVTFDMSTLAYREYSLP-----VEILLYTGFLIA 220
Query: 224 --FKSGAAPVHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVG 281
K A PVH WL D H A S +L+G+++K+GG YA+ R+ ++ P +
Sbjct: 221 YGVKLPAIPVHTWLPDTHGEAHYSTCMLLAGILLKMGG-YALIRINMNML-PHAHALFSP 278
Query: 282 WIIIIFACITLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALA 341
W+I + + +I + Q ++KR +AYSSV +G++L+G+G + E L
Sbjct: 279 WLIGV-GVVNIIYAALTSFAQRNLKRKIAYSSVSHMGFVLIGIG--------SLSEAGLN 329
Query: 342 GAIYHTVNHALMKALLFLVAGVVLHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMP 401
GA+ ++H L+ A LF +AG T L E+ GLA MPKT F + A + +P
Sbjct: 330 GAMLQMISHGLIGASLFFLAGTTYDRTRTLVLEEMGGLATFMPKTFALFTACSLASLALP 389
Query: 402 PLNGFASKWLIY---ESSALFNPLLGAIAIIGTA---FCTAAYVRVLF--TFFGRPSEKV 453
++GF ++ L++ +S ++P AI + A T Y+ + F+GR +
Sbjct: 390 GMSGFFAELLVFLGLVTSEAYSPTFRAIMTVFEAIGILLTPIYLLSMLRQLFYGRSIGRP 449
Query: 454 MKAKDPGATMLLPIFILVIAIIGMGLFP 481
D G + + L++ I+G+G++P
Sbjct: 450 KALIDAGPREVFVVSCLLVPILGIGIYP 477
>emb|CAC12088.1| (AL445066) NADH dehydrogenase, chain N related protein
[Thermoplasma acidophilum]
Length = 469
Score = 161 bits (403), Expect = 2e-38
Identities = 131/470 (27%), Positives = 233/470 (48%), Gaps = 31/470 (6%)
Query: 30 EIWATIISFATLIVGIEVFREVWSGGTIVYALG------SETPFGKADFPIRIVWEVDKF 83
EI+ I+ F L VGI V + + + L + TP+ A + I V+KF
Sbjct: 10 EIFLAIMGFVVLAVGIPVRKSIVNAAITFATLAVAIIMIAFTPYSSA-YGIT----VNKF 64
Query: 84 GAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIAITGDIFNFYVFLE 143
+++ + L +Y+ + E +Y+ ++ LGM+ +A T ++ +V E
Sbjct: 65 SEYFAIVLLISALFISLPVAKYLGKRS--EIFYSALIFSALGMIFVAETWNLIIAFVAFE 122
Query: 144 IMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLGIALLYGQYGTLTMGYLAVKM 203
+SI +Y + A+ +EA +KY F G++A++F++LGIA + GT T+ +
Sbjct: 123 SVSIMTYIMSAYGGKQ-RNLEATVKYFFTGTIATTFIILGIAFYFFSVGTFTLSTSTTMV 181
Query: 204 S-ENPTIVAKIALALFLGGLLFKSGAAPVHMWLADAHPAAPSSISAMLS-GLVIKIGGIY 261
S + PT++ +AL L G FK P+H W DA+ + +SA LS G I +
Sbjct: 182 SADKPTML--LALLFLLIGFGFKLAIFPMHQWAIDAYDGTENDVSAFLSTGTKIMA---F 236
Query: 262 AIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQEDMKRLLAYSSVGQIGYIL 321
I +F + + + A V + +I + +T+ N A+ Q ++KRLLAYSSV Q GY++
Sbjct: 237 VIVLKIFLVGFSSYT-APVYFFFVILSVLTMTYANVAALSQNNVKRLLAYSSVAQAGYLI 295
Query: 322 LGLG-IGIVAYGSK--VGEIALAGAIYHTVNHALMKALLFLVAGVVLHELGTRNLNELSG 378
L L + V G+K V ++A+A +++++ + MK FL +V E T + +SG
Sbjct: 296 LVLAVVSYVGIGNKPSVVDLAIASGMFYSLVYIFMKGGSFLAMNMVKQENVT--FDAISG 353
Query: 379 LAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSALFNPL--LGAIAIIGTAFCTA 436
L K P +F I ++ G+P GF +K+ ++ S + L L IAI+ +A
Sbjct: 354 LGKKSPYVAASFSILLLSLAGIPLTGGFLAKYFLF-LSVIDGGLWWLAVIAILNSAISVF 412
Query: 437 AYVRVL-FTFFGRPSEKVMKAKDPGATMLLPIFILVIAIIGMGLFPWQIS 485
Y++V+ + F+ P + A +++ I+V + +FP ++
Sbjct: 413 YYMKVMRYLFWEDPKSEFSTDNGNKAMVIISAAIVVFLGVFYVMFPMLVN 462
>gi|11466676 ndh2 [Marchantia polymorpha] >gi|128656|sp|P06257|NU2C_MARPO
NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 2, CHLOROPLAST
>gi|66151|pir||DELVN2 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 2 - liverwort (Marchantia polymorpha)
chloroplast >gi|453589|emb|CAA28058.1| (X04465) ndh2
[Marchantia polymorpha]
Length = 501
Score = 161 bits (402), Expect = 2e-38
Identities = 135/456 (29%), Positives = 214/456 (46%), Gaps = 51/456 (11%)
Query: 2 TWLPFIIIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREVWSGGTIVYAL 61
T LP I+I F + I+ L K IW IS +L++ I + + I+ L
Sbjct: 14 TILPECILI--FSLLIILIIDLTFPKKDTIWLYFISLTSLLISIIILLFQYKTDPIISFL 71
Query: 62 GSETPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMK-HDTGLEKYYTLIL 120
GS ++ D F I I F S L I S+EY+K + ++ IL
Sbjct: 72 GS--------------FQTDSFNRIFQSFIVFCSILCIPLSIEYIKCAKMAIPEFLIFIL 117
Query: 121 ILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFV 180
+G + + D+ +V LE +S+ SY L + EA IKY+ +G +SS +
Sbjct: 118 TATVGGMFLCGANDLVTIFVSLECLSLCSYLLCGYTKRDIRSNEAAIKYLLIGGTSSSIL 177
Query: 181 LLGIALLYGQYG------TLTMGYL-AVKMSENPTIVAKIALALFLGGLLFKSGAAPVHM 233
G + LYG G +T G L A + + T +A I + L GL FK P H
Sbjct: 178 AYGFSWLYGLSGGETNIQKITNGLLNAETYNSSGTFIAFICI---LVGLAFKLSLVPFHQ 234
Query: 234 WLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLI 293
W D + +P+ + A LS + KI G+ R++ +F + +P + I A +++I
Sbjct: 235 WTPDIYEGSPTPVVAFLS-VTSKIAGLALATRILNILF--SFSPNEWKIFLEILAILSMI 291
Query: 294 VGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIG-IVAYGSKVGEIALAGAIYHTVNHAL 352
+GN +A+ Q MKR+LAYSS+ QIGYIL+GL G + Y S + + Y +N
Sbjct: 292 LGNLVAITQTSMKRMLAYSSISQIGYILIGLITGDLKGYTS----MTIYVFFYIFMN--- 344
Query: 353 MKALLFLVAGVVLHEL--GTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASK- 409
L A ++L+ L GT N+ + +GL P +F+ + ++ G+PPL GF K
Sbjct: 345 ----LGTFACIILYSLRTGTDNIRDYAGLYIKDPLLSFSLTLCLLSLGGLPPLTGFFGKL 400
Query: 410 ---WLIYESSALFNPLLGAIAIIGTAFCTAAYVRVL 442
W ++S LL IA+I + Y++++
Sbjct: 401 YLFWCGWQSGFY---LLVFIALITSVISLYYYLKII 433
>pir||F72619 probable NADH dehydrogenase (ubiquinone) chain 13 APE1415 -
Aeropyrum pernix (strain K1) >gi|5105098|dbj|BAA80412.1|
(AP000061) 513aa long hypothetical NADH dehydrogenase
(ubiquinone) chain 13 [Aeropyrum pernix]
Length = 513
Score = 161 bits (402), Expect = 2e-38
Identities = 160/519 (30%), Positives = 242/519 (45%), Gaps = 74/519 (14%)
Query: 1 MTWLPFIIIIPLFGAFSMPIVSLLKGKAKEIWATIISFATLIVGIEVFREVWSGGTIVYA 60
+ WL +++P+ S+ IV+L A + A ++ ++ F+ V S G I
Sbjct: 7 LLWLS--LVLPVLA--SLTIVALPPRTAYWLVAITLAIPGIVSSYYAFQGVLSEGII--- 59
Query: 61 LGSETPFGKADFPIRIV-WEVDKFGAIMVLIITFVSFLAILYSLEYMK-----------H 108
++ I +V VD F VL ++ V+ L +Y +YM+
Sbjct: 60 --DPVSLNLSNIGIGVVALAVDGFSYPFVLGVSVVTALVAVYGYKYMEVRLREMEGEGER 117
Query: 109 DTGLEKYYTLILILELGMLGIAITGDIFNFYVFLEIMSIASYALVAFRHDTWEGIEAGIK 168
G Y L I MLGIA + + F +FLE+ ++S+ L+AF + + +
Sbjct: 118 APGHAAYLILYSIFSSTMLGIAYSLNFLLFIIFLELSLLSSFLLIAF-YGYGDRRRIALL 176
Query: 169 YMFVGSLASSFVLLGIALLYGQYGTLTMGYLAVKMSENPTIV-----------AKIALAL 217
Y +A + LLG G Y + G V E IV A IA
Sbjct: 177 YFVWTHIAGALALLG-----GLYYVIKTGTFDVATVEGGRIVYFSSPADRSVYAAIAGVS 231
Query: 218 FLGGLLFKSGAAPVHMWLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWP---- 273
L G+L K VHMWL AH AP+ ISA+LS +I +GG Y IAR + F+P
Sbjct: 232 LLLGMLVKMAVFGVHMWLPYAHAEAPTPISALLSPNLIGLGG-YGIARFA-AAFYPWLLE 289
Query: 274 AINPATVGWIIIIFACITLIVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGS 333
+ P VG A +T++ G +A+ Q D KRLLAYSS+ Q+GY+LL L S
Sbjct: 290 DLKPLLVG-----LAFVTIVYGGLVALSQLDFKRLLAYSSISQMGYMLLAL--------S 336
Query: 334 KVGEIALAGAIYHTVNHALMKALLFLVAGVVLHEL-GTRNLNELSGLAKTMPKTTFAFLI 392
+ + A A + HA+ KA+LF+ AGV + E G RN+ + GLA+ P T A LI
Sbjct: 337 TLHPLGFAAASLIFLGHAVGKAVLFMTAGVFITEAHGLRNIARMGGLARLYPLTAAAALI 396
Query: 393 GAAAIVGMPPLNGFASKWLIYESSALFN-------PLLGAIAII-GTAF-CTAAY--VRV 441
G + G+PP GF + +Y + ++ N LG +AII AF TAAY + +
Sbjct: 397 GFLHLAGIPPAFGFWGE--LYLTLSVLNYPGYSDAVSLGLLAIILIVAFTVTAAYSFITM 454
Query: 442 LFTFFGRPSEKVMKAKDPGATMLLPIFILVIAIIGMGLF 480
FFGRP + ++ ++++A++G+ LF
Sbjct: 455 RRIFFGRPRADMDAREEVDG---FKSTVVLLAVLGVALF 490
>sp|Q37680|NU5M_WHEAT NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5 >gi|7596997|gb|AAA32142.2|
(M74159) NADH dehydrogenase subunit 5 [Triticum
aestivum]
Length = 670
Score = 160 bits (401), Expect = 3e-38
Identities = 137/524 (26%), Positives = 239/524 (45%), Gaps = 54/524 (10%)
Query: 7 IIIIPLFGAFSMPIVSLLKGKAKE--IWATIISFATLIVGIEVFREVWSGGTIVYALGSE 64
I+ +PL G+ G + T +SF++ I+ + F EV G + Y L
Sbjct: 5 IVFLPLLGSSVAGFFGRFLGSEGTAIMTTTCVSFSS-ILSLIAFYEVALGASACY-LRIA 62
Query: 65 TPFGKADFPIRIVWEVDKFGAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILEL 124
F + D +M++++TF+S L LYS+ YM D ++ + I
Sbjct: 63 PWISSEMFDASWGFLFDSLTVVMLIVVTFISSLVHLYSISYMSEDPHSPRFMCYLSIFTF 122
Query: 125 GMLGIAITGDIF-NFYVFLEIMSIASYALVAFRHDTWEGIEAGIKYMFVGSLASSFVLLG 183
ML + +TGD F ++ E + +ASY L+ F + +A IK M V + + LG
Sbjct: 123 FML-MLVTGDNFLQLFLGWEGVGLASYLLIHFWFTRLQADKAAIKAMLVNRVGDFGLALG 181
Query: 184 IALLYGQYGTLTMG--YLAVKMSENPTI--------VAKIALALFLGGLLFKSGAAPVHM 233
I + + T+ + N I + I + LF+G + KS +H
Sbjct: 182 IFGCFTLFQTVDFSTIFACASAPRNEWIFCNMRLNAITLICILLFIGA-VGKSAQIGLHT 240
Query: 234 WLADAHPAAPSSISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFA-CITL 292
WL DA P+ +SA++ + G++ IAR P + I+I FA +T
Sbjct: 241 WLPDA-MEGPTPVSALIHAATMVTAGVFMIARCS-----PLFEYSPTALIVITFAGAMTS 294
Query: 293 IVGNAMAVVQEDMKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHAL 352
+ ++Q D+KR++AYS+ Q+GY++ GI + +++H +NHA
Sbjct: 295 FLAATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSV-----------SVFHLMNHAF 343
Query: 353 MKALLFLVAGVVLHELG-TRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWL 411
KALLFL AG V+H + +++ ++ GLA + P T L+G+ +++G P L GF SK +
Sbjct: 344 FKALLFLSAGSVIHAMSDEQDMRKMGGLASSFPLTYAMMLMGSLSLIGFPFLTGFYSKDV 403
Query: 412 I-------YESSALFNPLLGAIAIIGTAFCTAAYVRVLFTFFGRPSEKV----MKAKDPG 460
I Y S F LG+++++ T++ + R+LF F P+ ++ D
Sbjct: 404 ILELAYTKYTISGNFAFWLGSVSVLFTSYYS---FRLLFLTFLVPTNSFGRDRLRCHDAP 460
Query: 461 ATMLLPIFILVIAIIGMGLFPWQISDKFMVPAAKSLWDIMGYVI 504
M +P+ +L + LF ++ M+ + W +V+
Sbjct: 461 IPMAIPLILLALG----SLFVGYLAKDMMIGLGTNFWANSPFVL 500
>gb|AAF65740.1|AF228525_10 (AF228525) F420H2 dehydrogenase subunit FpoM [Methanosarcina mazei]
Length = 495
Score = 160 bits (401), Expect = 3e-38
Identities = 111/423 (26%), Positives = 208/423 (48%), Gaps = 44/423 (10%)
Query: 84 GAIMVLIITFVSFLAILYSLEYMKHDTGLEKYYTLILILELGMLGIAITGDIFNFYVFLE 143
G M LI+ + + + + ++Y LIL ++ ++G+ + D FY+F E
Sbjct: 79 GVSMPLILLNAIVIPFMILFTWKEEMESPNRFYGLILTMQAAVIGVFVALDFVVFYIFWE 138
Query: 144 IMSIASYALVAFRHDTWEGIE---AGIKYMFVGSLASSFVLLGIALLYGQYGTLTMGYLA 200
+ + + +V + W G A K+ +AS +LLGI L+ Y A
Sbjct: 139 LTLVPLFFIV----NLWGGANRAHASYKFFIYTHVASLVMLLGIFGLF---------YTA 185
Query: 201 VKMSENPTIVAKIALALF----------------LGGLLFKSGAAPVHMWLADAHPAAPS 244
+ + PT + +A F L G L K A P H WL DA+ AP+
Sbjct: 186 LNQTGVPTFDIRELIAQFQFFEPGLMKDGIFLAILFGFLAKLPAFPFHSWLPDAYSEAPT 245
Query: 245 SISAMLSGLVIKIGGIYAIARVVFSIFWPAINPATVGWIIIIFACITLIVGNAMAVVQED 304
+ S + +++KIGG Y + R+ + +P + I+ + ++++ G +A+ Q+D
Sbjct: 246 AGSILF--ILLKIGG-YGLFRISLPMLPNTGSPQLMIMILGLLGSVSILYGALLALRQKD 302
Query: 305 MKRLLAYSSVGQIGYILLGLGIGIVAYGSKVGEIALAGAIYHTVNHALMKALLFLVAGVV 364
+KR++AYSS+ +GY++LG G+V ++++GA++ +H L+ +++F+ AG +
Sbjct: 303 LKRMIAYSSLSHMGYVILG-SAGLVT-------LSVSGAMFQQFSHGLIMSIMFMSAGAI 354
Query: 365 LHELGTRNLNELSGLAKTMPKTTFAFLIGAAAIVGMPPLNGFASKWLIYESSALFNPLLG 424
GTR +NEL GLAK MP T A ++G A +G+P L GF +++L+ + P+
Sbjct: 355 QTAAGTRIINELGGLAKKMPMLTVAMMVGFMASLGLPGLTGFIAEFLVLTFTFTNLPVFV 414
Query: 425 AIAIIGTAFCTAAYVRVL-FTFFGRPSEKVMKAKDPGATMLLPIFILVIAIIGMGLFPWQ 483
IA++ ++ + FG +EK+ +D + + + ++ + ++ GL P
Sbjct: 415 VIALLAIVVTAGYHLWAMQRAMFGVYNEKLGDVRDINSIQVFSMAVIALLVLYFGLNPSP 474
Query: 484 ISD 486
+ D
Sbjct: 475 VLD 477
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.328 0.144 0.435
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182473732
Number of Sequences: 2977
Number of extensions: 7477720
Number of successful extensions: 40273
Number of sequences better than 1.0e-10: 2786
Number of HSP's better than 0.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 2744
Number of HSP's that attempted gapping in prelim test: 29984
Number of HSP's gapped (non-prelim): 3274
length of query: 510
length of database: 189,106,746
effective HSP length: 52
effective length of query: 458
effective length of database: 157,985,422
effective search space: 72357323276
effective search space used: 72357323276
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 167 (69.5 bits)