BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1889 (PAB1889) DE:Hypothetical protein
         (118 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75115 hypothetical protein PAB1889 - Pyrococcus abyssi (st...   246  8e-65
pir||D71017 hypothetical protein PH1433 - Pyrococcus horikoshii ...   212  1e-54

>pir||E75115 hypothetical protein PAB1889 - Pyrococcus abyssi (strain Orsay)
           >gi|5458149|emb|CAB49638.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 118
           
 Score =  246 bits (621), Expect = 8e-65
 Identities = 118/118 (100%), Positives = 118/118 (100%)

Query: 1   MVEVFGYWDALYFILVFIIGLVLAYLLDAWAKKAGMGTREVGDGTKIFISGEDPEKVIPG 60
           MVEVFGYWDALYFILVFIIGLVLAYLLDAWAKKAGMGTREVGDGTKIFISGEDPEKVIPG
Sbjct: 1   MVEVFGYWDALYFILVFIIGLVLAYLLDAWAKKAGMGTREVGDGTKIFISGEDPEKVIPG 60

Query: 61  FEHLEGYYTGRNTMWGVIYGVKRFFTTLRKDHTGLLTDYVSYLLMTTAFILILMLIRG 118
           FEHLEGYYTGRNTMWGVIYGVKRFFTTLRKDHTGLLTDYVSYLLMTTAFILILMLIRG
Sbjct: 61  FEHLEGYYTGRNTMWGVIYGVKRFFTTLRKDHTGLLTDYVSYLLMTTAFILILMLIRG 118


>pir||D71017 hypothetical protein PH1433 - Pyrococcus horikoshii
           >gi|3257857|dbj|BAA30540.1| (AP000006) 118aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 118
           
 Score =  212 bits (534), Expect = 1e-54
 Identities = 95/118 (80%), Positives = 113/118 (95%)

Query: 1   MVEVFGYWDALYFILVFIIGLVLAYLLDAWAKKAGMGTREVGDGTKIFISGEDPEKVIPG 60
           MV++FGYWDALYFILVF IGL+LAYLL+ WAK++GMGTREVGDGTKIFISGEDP+KVIPG
Sbjct: 1   MVKLFGYWDALYFILVFTIGLILAYLLNEWAKRSGMGTREVGDGTKIFISGEDPDKVIPG 60

Query: 61  FEHLEGYYTGRNTMWGVIYGVKRFFTTLRKDHTGLLTDYVSYLLMTTAFILILMLIRG 118
           FEHL G+YTGRNTMWG+I GV++FF+ LR+DHTGLLTDYVSYLL+TTAFIL+++L+RG
Sbjct: 61  FEHLVGHYTGRNTMWGLINGVRKFFSVLREDHTGLLTDYVSYLLITTAFILVVLLVRG 118


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.329    0.148    0.464 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46751940
Number of Sequences: 2977
Number of extensions: 2038684
Number of successful extensions: 6080
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6078
Number of HSP's gapped (non-prelim): 2
length of query: 118
length of database: 189,106,746
effective HSP length: 45
effective length of query: 73
effective length of database: 162,174,831
effective search space: 11838762663
effective search space used: 11838762663
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 160 (66.7 bits)