BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1890 (cooL-like) DE:CO-induced hydrogenase related, subunit
L
(170 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75115 co-induced hydrogenase related, chain l PAB1890 - Py... 351 4e-96
pir||E71017 probable NADH-ubiquinone oxidoreductase subunit - Py... 324 4e-88
emb|CAA76119.1| (Y16191) echC [Methanosarcina barkeri] 165 3e-40
pir||T51316 probable CO-induced hydrogenase complex chain CooL [... 162 3e-39
pir||C75060 hydrogenase (EC 1.-.-.-) 4 component I PAB1396 [impo... 153 1e-36
pir||D64364 formate hydrogenlyase, subunit 7 - Methanococcus jan... 147 8e-35
gb|AAB98505.1| (U67501) carbon monoxide dehydrogenase, hydrogena... 147 8e-35
sp|P16433|HYCG_ECOLI FORMATE HYDROGENLYASE SUBUNIT 7 (FHL SUBUNI... 145 4e-34
emb|CAA35552.1| (X17506) hycG [Escherichia coli] >gi|1093500|prf... 143 1e-33
dbj|BAA16377.1| (D90877) probable hydrogenase 3 protein 7 [Esche... 143 2e-33
sp|P77668|HYFI_ECOLI HYDROGENASE-4 COMPONENT I >gi|7443160|pir||... 143 2e-33
emb|CAB52769.1| (AJ243655) hydrogenase small subunit [Methanobac... 136 1e-31
pir||E69151 formate hydrogenlyase, subunit 7 - Methanobacterium ... 136 2e-31
gb|AAB88386.1| (AF034788) formate hydrogenlyase subunit 7 [Metha... 125 2e-28
pir||E69032 formate hydrogenlyase, subunit 7 - Methanobacterium ... 125 2e-28
emb|CAB52790.1| (AJ243656) hydrogenase small subunit [Methanobac... 123 9e-28
pir||B64470 formate hydrogenlyase, subunit 7 - Methanococcus jan... 123 1e-27
pir||D72281 hypothetical protein TM1214 - Thermotoga maritima (s... 121 4e-27
pir||C70850 probable oxidoreductase subunit - Mycobacterium tube... 120 1e-26
sp|O68853|NUB1_RHIME NADH DEHYDROGENASE I CHAIN B 1 (NADH-UBIQUI... 118 5e-26
gb|AAC12755.1| (AF055637) NADH-ubiqionone oxidoreductase subunit... 118 5e-26
gb|AAF65732.1|AF228525_2 (AF228525) F420H2 dehydrogenase subunit... 117 9e-26
emb|CAC08301.1| (AL392148) NADH dehydrogenase subunit [Streptomy... 117 9e-26
gb|AAF48552.1| (AE003500) CG9172 gene product [Drosophila melano... 116 2e-25
pir||D71019 probable NADH-ubiquinone oxidoreductase subunit - Py... 116 2e-25
pir||A75114 NADH dehydrogenase I chain B PAB0493 - Pyrococcus ab... 115 4e-25
sp|P42026|NUKM_BOVIN NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNI... 114 6e-25
gb|AAF56901.1| (AE003770) CG2014 gene product [Drosophila melano... 114 6e-25
gb|AAC27669.1| (AC005329) NUKM_HUMAN, partial CDS; COMPLE; CI-20... 113 1e-24
sp|O75251|NUKM_HUMAN NADH-UBIQUINONE OXIDOREDUCTASE 20 KDA SUBUN... 113 1e-24
gi|11466592 NADH dehydrogenase subunit 10 [Rhodomonas salina] >g... 111 4e-24
sp|P29918|NQO6_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6 (NAD... 111 4e-24
gb|AAA03036.1| (M93015) NADH dehydrogenase [Paracoccus denitrifi... 111 4e-24
sp|Q94360|NUKM_CAEEL PROBABLE NADH-UBIQUINONE OXIDOREDUCTASE 20 ... 111 4e-24
sp|O84970|NUOB_RHOCA NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINO... 111 5e-24
sp|P17062|NUJC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K... 109 1e-23
sp|Q43844|NUKM_SOLTU NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNI... 109 2e-23
sp|O47950|NUKM_NEUCR PROBABLE NADH-UBIQUINONE OXIDOREDUCTASE 19.... 109 3e-23
sp|P56897|NUB2_RHIME NADH DEHYDROGENASE I CHAIN B 2 (NADH-UBIQUI... 109 3e-23
emb|CAB65525.1| (AJ250340) subunit NUKM of protein NADH:Ubiquino... 108 3e-23
gb|AAA79257.1| (M26930) photosystem II protein G [Paramecium aur... 108 6e-23
gb|AAF91429.1|AF279902_1 (AF279902) NADH-ubiquinone oxidoreducta... 108 6e-23
sp|Q9XBL7|NUKC_ANAVA NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K... 107 7e-23
gb|AAF03193.1|AF110138_25 (AF110138) NADH dehydrogenase subunit ... 107 7e-23
pir||F81992 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 107 7e-23
pir||H81221 NADH dehydrogenase I, B chain NMB0242 [imported] - N... 107 1e-22
gi|11466535 NADH dehydrogenase, subunit 10 [Reclinomonas america... 106 1e-22
sp|Q9ZDH2|NUOB_RICPR NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINO... 106 1e-22
emb|CAB45640.1| (AJ012180) NDH-K protein [Anabaena PCC7120] 106 1e-22
sp|Q44240|NUKC_ANASP NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K... 106 2e-22
gi|11466261 NADH dehydrogenase subunit 10 [Tetrahymena pyriformi... 106 2e-22
sp|P42027|NUKM_BRAOL NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNI... 106 2e-22
sp|Q42577|NUKM_ARATH NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNI... 106 2e-22
pir||T44818 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain P... 106 2e-22
gb|AAF91434.1| (AF281035) NADH-ubiquinone oxidoreductase subunit... 106 2e-22
gi|7525037 photosystem II G protein [Arabidopsis thaliana] >gi|6... 105 3e-22
pir||D82821 NADH-ubiquinone oxidoreductase, NQO6 subunit XF0306 ... 103 1e-21
gb|AAG19138.1| (AE005011) NADH dehydrogenase/oxidoreductase; Ndh... 102 2e-21
gi|11466706 psbG [Marchantia polymorpha] >gi|131322|sp|P06410|NU... 102 3e-21
gi|11466396 subunit K of NADH-ubiquinone oxidoreductase [Mesosti... 102 3e-21
sp|P19050|NUKC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K... 102 3e-21
sp|P52766|NUKC_LUPLU NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K... 102 3e-21
sp|P95180|NUOB_MYCTU NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINO... 102 3e-21
gi|11466791 psbG; PSII G protein [Oryza sativa] >gi|131323|sp|P1... 101 4e-21
sp|P26304|NUKC_WHEAT NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K... 101 4e-21
gi|11467814 subunit K of NADH-ubiquinone oxidoreductase [Nephros... 101 4e-21
gi|11465961 NADH dehydrogenase 27kD subunit [Nicotiana tabacum] ... 101 6e-21
pir||F2ZMG NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain nd... 101 6e-21
sp|P06409|NUKC_TOBAC NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K... 101 6e-21
gi|11467196 ndhK [Zea mays] >gi|1171864|sp|P06670|NUKC_MAIZE NAD... 101 6e-21
emb|CAA06191.1| (AJ004882) NADH-plastoquinone oxidoreductase sub... 101 7e-21
pir||H81252 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 101 7e-21
gi|11497532 NADH dehydrogenase 32kDa subunit [Spinacia oleracea]... 101 7e-21
sp|Q56218|NQO6_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6 (NAD... 100 1e-20
sp|O67334|NUOB_AQUAE NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINO... 100 1e-20
pir||E64677 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N... 100 1e-20
pir||C71838 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N... 100 1e-20
sp|P15602|NUKM_PARTE NADH-UBIQUINONE OXIDOREDUCTASE 20 KDA SUBUN... 100 2e-20
pir||C75388 NADH dehydrogenase I, B subunit - Deinococcus radiod... 100 2e-20
gi|8928600 NADH dehydrogenase subunit 10 [Paramecium aurelia] 100 2e-20
gb|AAK40969.1| NADH dehydrogenase subunit B (NuoB) [Sulfolobus ... 99 2e-20
gb|AAK41285.1| Formate hydrogenlyase subunit 7 (hycG) [Sulfolobu... 99 2e-20
emb|CAB57637.1| (Y18930) hypothetical protein [Sulfolobus solfat... 99 2e-20
emb|CAC12098.1| (AL445066) probable NADH dehydrogenase, chain B ... 99 2e-20
sp|P31175|NUKC_SOYBN NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT K >g... 98 6e-20
pir||C72621 probable NADH dehydrogenase (ubiquinone) chain 10 AP... 98 8e-20
pir||T34623 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain n... 96 2e-19
gb|AAF97798.1|AF281148_2 (AF281148) NADH dehydrogenase I subunit... 94 1e-18
pir||C83316 NADH dehydrogenase I chain B PA2638 [imported] - Pse... 94 1e-18
sp|P33598|NUOB_ECOLI NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINO... 93 2e-18
gi|11499417 F420H2:quinone oxidoreductase, 39.7 kDa subunit, put... 92 3e-18
pir||S37059 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain B... 92 4e-18
sp|O85274|NUOB_ERWCA NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINO... 92 5e-18
sp|Q26783|NUKM_TRYBB NADH-UBIQUINONE OXIDOREDUCTASE 20 KDA SUBUN... 90 1e-17
sp|P57253|NUOB_BUCAI NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINO... 89 4e-17
dbj|BAA16121.1| (D90860) NADH DEHYDROGENASE I CHAIN B (EC 1.6.5.... 78 6e-14
emb|CAB67131.1| (AJ271079) NADH-plastoquinone oxidoreductase sub... 78 8e-14
>pir||D75115 co-induced hydrogenase related, chain l PAB1890 - Pyrococcus abyssi
(strain Orsay) >gi|5458148|emb|CAB49637.1| (AJ248285)
CO-induced hydrogenase related, subunit L [Pyrococcus
abyssi]
Length = 170
Score = 351 bits (890), Expect = 4e-96
Identities = 170/170 (100%), Positives = 170/170 (100%)
Query: 1 MTIKLPAQTEERKRLERRIAQLCRFIGRSPWVFHVNSGSCNGCDIEIIAALTPRYDAERF 60
MTIKLPAQTEERKRLERRIAQLCRFIGRSPWVFHVNSGSCNGCDIEIIAALTPRYDAERF
Sbjct: 1 MTIKLPAQTEERKRLERRIAQLCRFIGRSPWVFHVNSGSCNGCDIEIIAALTPRYDAERF 60
Query: 61 GVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVIAIGSCPTGGSVFYESPFT 120
GVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVIAIGSCPTGGSVFYESPFT
Sbjct: 61 GVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVIAIGSCPTGGSVFYESPFT 120
Query: 121 NAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKMLKGEVPPEEGEE 170
NAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKMLKGEVPPEEGEE
Sbjct: 121 NAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKMLKGEVPPEEGEE 170
>pir||E71017 probable NADH-ubiquinone oxidoreductase subunit - Pyrococcus
horikoshii >gi|3257858|dbj|BAA30541.1| (AP000006) 173aa
long hypothetical NADH-ubiquinone oxidoreductase subunit
[Pyrococcus horikoshii]
Length = 173
Score = 324 bits (822), Expect = 4e-88
Identities = 156/172 (90%), Positives = 165/172 (95%), Gaps = 3/172 (1%)
Query: 1 MTIKLPAQT---EERKRLERRIAQLCRFIGRSPWVFHVNSGSCNGCDIEIIAALTPRYDA 57
MTIK+P Q EERKRLE+RIAQLC+FIG+SPWVFHVNSGSCNGCDIEIIAALTPRYDA
Sbjct: 1 MTIKVPIQAQQNEERKRLEKRIAQLCKFIGKSPWVFHVNSGSCNGCDIEIIAALTPRYDA 60
Query: 58 ERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVIAIGSCPTGGSVFYES 117
ERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTP+PKIVIA+GSC TGGSVFYES
Sbjct: 61 ERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPDPKIVIAVGSCATGGSVFYES 120
Query: 118 PFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKMLKGEVPPEEGE 169
PFTNAPLD VIPVDVFVPGCPPRPEAIL+GVVLALEKLAKMLKGE+PPEEG+
Sbjct: 121 PFTNAPLDNVIPVDVFVPGCPPRPEAILYGVVLALEKLAKMLKGEIPPEEGD 172
>emb|CAA76119.1| (Y16191) echC [Methanosarcina barkeri]
Length = 156
Score = 165 bits (413), Expect = 3e-40
Identities = 73/142 (51%), Positives = 102/142 (71%)
Query: 26 IGRSPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSL 85
+ +SPW+ HVN SCNGCDIE++A LTP YDAERFGV +G+P+ ADI++VTG V +++
Sbjct: 3 LAKSPWIIHVNCNSCNGCDIEVVACLTPLYDAERFGVLNIGTPKQADIMVVTGSVNYKNV 62
Query: 86 ERVKLVYEQTPEPKIVIAIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAIL 145
+K +Y Q P+PK+V+A+G+C + G +F++ +D+VIPVD +VPGC PRPEAIL
Sbjct: 63 NVLKNIYNQIPDPKVVLAVGACASTGGIFHDCYNVIGGVDQVIPVDAYVPGCCPRPEAIL 122
Query: 146 HGVVLALEKLAKMLKGEVPPEE 167
GVV AL L KG + +E
Sbjct: 123 DGVVAALSILENKKKGNIKGKE 144
>pir||T51316 probable CO-induced hydrogenase complex chain CooL [imported] -
Rhodospirillum rubrum >gi|1515468|gb|AAC45118.1|
(U65510) CooL [Rhodospirillum rubrum]
Length = 142
Score = 162 bits (405), Expect = 3e-39
Identities = 72/133 (54%), Positives = 96/133 (72%), Gaps = 1/133 (0%)
Query: 22 LCRFIGRSPWVFHVNSGSCNGCDIEIIA-ALTPRYDAERFGVKLVGSPRHADILLVTGPV 80
L R +SPW++ +N+GSCNGCD+E+ A PRYD ER G + GSP+HADI+LVTGP+
Sbjct: 4 LSRMSKKSPWLYRINAGSCNGCDVELATTACIPRYDVERLGCQYCGSPKHADIVLVTGPL 63
Query: 81 TNQSLERVKLVYEQTPEPKIVIAIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPR 140
T + ++V VYE+ P+PK+ +AIG CP G VF ES P+DR +PVDV VPGCPPR
Sbjct: 64 TARVKDKVLRVYEEIPDPKVTVAIGVCPISGGVFRESYSIVGPIDRYLPVDVNVPGCPPR 123
Query: 141 PEAILHGVVLALE 153
P+AI+ G+ A+E
Sbjct: 124 PQAIIEGIAKAIE 136
>pir||C75060 hydrogenase (EC 1.-.-.-) 4 component I PAB1396 [imported] -
Pyrococcus abyssi (strain Orsay)
>gi|5458889|emb|CAB50376.1| (AJ248287) HYDROGENASE-4
COMPONENT I (EC 1.-.-.-). [Pyrococcus abyssi]
Length = 271
Score = 153 bits (383), Expect = 1e-36
Identities = 76/161 (47%), Positives = 107/161 (66%), Gaps = 19/161 (11%)
Query: 28 RSPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLER 87
+S WV+HV++GSCNGCDIE++ LTP YD ER G+K+V +PRHAD LL+TGP+T Q+
Sbjct: 5 KSLWVYHVDAGSCNGCDIEVLDVLTPYYDLERLGIKVVPNPRHADALLITGPLTRQTRMA 64
Query: 88 VKLVYE-QTPEPKIVIAIGSCPTGGSVFYES--PFTNAP-----------LDRVIPVDVF 133
+K YE P+P+IV+AIG+C G +FY S + +P ++ V+PVD++
Sbjct: 65 IKKAYEAMPPKPRIVVAIGTCACSGGIFYNSYALYNTSPERGRDRLRSGGIEMVVPVDMY 124
Query: 134 VPGCPPRPEAILHGVVLALEKLAKMLKGE----VPP-EEGE 169
+PGCPP PE IL+G+ L K +KGE +PP EEG+
Sbjct: 125 IPGCPPSPEEILYGLAQLLGIKEKRMKGEHWKALPPGEEGK 165
>pir||D64364 formate hydrogenlyase, subunit 7 - Methanococcus jannaschii
Length = 153
Score = 147 bits (367), Expect = 8e-35
Identities = 70/134 (52%), Positives = 91/134 (67%), Gaps = 1/134 (0%)
Query: 25 FIGRSPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQS 84
F RS V VN+G CNGCDIEI+A L PRYD E++G+ + +PR AD+LLVTGPVT Q
Sbjct: 11 FRKRSIHVCVVNTGGCNGCDIEIVACLAPRYDIEQYGIYVHNNPREADVLLVTGPVTLQW 70
Query: 85 LERVKLVYEQTPEPKIVIAIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAI 144
ER+K +YE+TPEPKIV+A+G+C G +F E +D+VIPVD +PGCPPRP I
Sbjct: 71 AERLKEIYEKTPEPKIVVAVGACALSGGIFKEGHVVGG-VDKVIPVDAKIPGCPPRPSEI 129
Query: 145 LHGVVLALEKLAKM 158
+ ++ K M
Sbjct: 130 IETILKVAPKAIAM 143
>gb|AAB98505.1| (U67501) carbon monoxide dehydrogenase, hydrogenase subunit CooL
(cooL) [Methanococcus jannaschii]
Length = 148
Score = 147 bits (367), Expect = 8e-35
Identities = 70/134 (52%), Positives = 91/134 (67%), Gaps = 1/134 (0%)
Query: 25 FIGRSPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQS 84
F RS V VN+G CNGCDIEI+A L PRYD E++G+ + +PR AD+LLVTGPVT Q
Sbjct: 6 FRKRSIHVCVVNTGGCNGCDIEIVACLAPRYDIEQYGIYVHNNPREADVLLVTGPVTLQW 65
Query: 85 LERVKLVYEQTPEPKIVIAIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAI 144
ER+K +YE+TPEPKIV+A+G+C G +F E +D+VIPVD +PGCPPRP I
Sbjct: 66 AERLKEIYEKTPEPKIVVAVGACALSGGIFKEGHVVGG-VDKVIPVDAKIPGCPPRPSEI 124
Query: 145 LHGVVLALEKLAKM 158
+ ++ K M
Sbjct: 125 IETILKVAPKAIAM 138
>sp|P16433|HYCG_ECOLI FORMATE HYDROGENLYASE SUBUNIT 7 (FHL SUBUNIT 7) (HYDROGENASE-3
COMPONENT G) >gi|78777|pir||S08625 hydrogenase (EC
1.18.99.1) 3 chain 7 - Escherichia coli
>gi|882612|gb|AAA69229.1| (U29579) formate hydrogenlyase
subunit 7 [Escherichia coli] >gi|1789074|gb|AAC75761.1|
(AE000356) hydrogenase activity [Escherichia coli K12]
Length = 255
Score = 145 bits (361), Expect = 4e-34
Identities = 68/151 (45%), Positives = 95/151 (62%)
Query: 20 AQLCRFIGRSPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGP 79
A L + I RS +V+ V+ G CNGC+IEI A L+P +DAERFG+K+V SPRHADILL TG
Sbjct: 28 ASLLKKIKRSAYVYRVDCGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGA 87
Query: 80 VTNQSLERVKLVYEQTPEPKIVIAIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPP 139
VT ++ P+PKI I+ G+C G +F++ D+++PVDV++PGCPP
Sbjct: 88 VTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPP 147
Query: 140 RPEAILHGVVLALEKLAKMLKGEVPPEEGEE 170
P A L+G +AL L + + P E E+
Sbjct: 148 TPAATLYGFAMALGLLEQKIHARGPGELDEQ 178
>emb|CAA35552.1| (X17506) hycG [Escherichia coli] >gi|1093500|prf||2104213G hycG
gene [Escherichia coli]
Length = 255
Score = 143 bits (357), Expect = 1e-33
Identities = 67/151 (44%), Positives = 94/151 (61%)
Query: 20 AQLCRFIGRSPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGP 79
A L + I RS +V+ V+ G CNGC+IEI L+P +DAERFG+K+V SPRHADILL TG
Sbjct: 28 ASLLKKIKRSAYVYRVDCGGCNGCEIEIFGTLSPLFDAERFGIKVVPSPRHADILLFTGA 87
Query: 80 VTNQSLERVKLVYEQTPEPKIVIAIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPP 139
VT ++ P+PKI I+ G+C G +F++ D+++PVDV++PGCPP
Sbjct: 88 VTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPP 147
Query: 140 RPEAILHGVVLALEKLAKMLKGEVPPEEGEE 170
P A L+G +AL L + + P E E+
Sbjct: 148 TPAATLYGFAMALGLLEQKIHARGPGELDEQ 178
>dbj|BAA16377.1| (D90877) probable hydrogenase 3 protein 7 [Escherichia coli]
Length = 251
Score = 143 bits (356), Expect = 2e-33
Identities = 70/157 (44%), Positives = 97/157 (61%), Gaps = 6/157 (3%)
Query: 3 IKLPAQTEERKRLERRIAQLCRFIGRSPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGV 62
I L QT++ KR L + I RS +V+ V+ G CN C+IEI AA+TP +DAERFG+
Sbjct: 13 ITLDEQTQKMKR------HLLQDIRRSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGI 66
Query: 63 KLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVIAIGSCPTGGSVFYESPFTNA 122
K+V SPRHADILL TG VT YE P+ KI ++ G+C GG +F++
Sbjct: 67 KVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWG 126
Query: 123 PLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKML 159
D ++P+DV++PGCPP P A +HG +AL L + +
Sbjct: 127 GSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQKI 163
>sp|P77668|HYFI_ECOLI HYDROGENASE-4 COMPONENT I >gi|7443160|pir||H65024 psbG homolog
protein b2489 - Escherichia coli (strain K-12)
>gi|1788834|gb|AAC75542.1| (AE000335) hydrogenase 4 Fe-S
subunit [Escherichia coli K12]
>gi|2668498|gb|AAB88571.1| (M63654) HyfI [Escherichia
coli]
Length = 252
Score = 143 bits (356), Expect = 2e-33
Identities = 70/157 (44%), Positives = 97/157 (61%), Gaps = 6/157 (3%)
Query: 3 IKLPAQTEERKRLERRIAQLCRFIGRSPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGV 62
I L QT++ KR L + I RS +V+ V+ G CN C+IEI AA+TP +DAERFG+
Sbjct: 13 ITLDEQTQKMKR------HLLQDIRRSAYVYRVDCGGCNACEIEIFAAITPVFDAERFGI 66
Query: 63 KLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVIAIGSCPTGGSVFYESPFTNA 122
K+V SPRHADILL TG VT YE P+ KI ++ G+C GG +F++
Sbjct: 67 KVVSSPRHADILLFTGAVTRAMRMPALRAYESAPDHKICVSYGACGVGGGIFHDLYSVWG 126
Query: 123 PLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKML 159
D ++P+DV++PGCPP P A +HG +AL L + +
Sbjct: 127 GSDTIVPIDVWIPGCPPTPAATIHGFAVALGLLQQKI 163
>emb|CAB52769.1| (AJ243655) hydrogenase small subunit [Methanobacterium
thermoautotrophicum]
Length = 148
Score = 136 bits (340), Expect = 1e-31
Identities = 62/116 (53%), Positives = 84/116 (71%), Gaps = 1/116 (0%)
Query: 35 VNSGSCNGCDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQ 94
VN+G CNGCDIE++A L+PRYD E++G+ + +PR AD++LVTG VT Q E+++ +Y +
Sbjct: 19 VNTGGCNGCDIEVLALLSPRYDLEQYGIYVHQNPREADVILVTGAVTEQWREKLQRIYSK 78
Query: 95 TPEPKIVIAIGSCPTGGSVF-YESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVV 149
PEPKIV+A+G+CP G VF E AP+ IPVDV VPGCPPRP IL ++
Sbjct: 79 APEPKIVVALGNCPISGDVFNQEGGSVYAPVSDFIPVDVEVPGCPPRPFEILEAIL 134
>pir||E69151 formate hydrogenlyase, subunit 7 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621459|gb|AAB84903.1| (AE000824) formate
hydrogenlyase, subunit 7 [Methanobacterium
thermoautotrophicum]
Length = 148
Score = 136 bits (339), Expect = 2e-31
Identities = 61/116 (52%), Positives = 83/116 (70%), Gaps = 1/116 (0%)
Query: 35 VNSGSCNGCDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQ 94
VN+G CNGCDIE++A L+PRYD E++G+ + +PR AD++LVTG VT Q E+++ +Y +
Sbjct: 19 VNTGGCNGCDIEVLALLSPRYDLEQYGIYVHQNPREADVILVTGAVTEQWREKLQRIYRK 78
Query: 95 TPEPKIVIAIGSCPTGGSVF-YESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVV 149
PEPKIV+A+G+CP G VF E AP+ IPVD VPGCPPRP IL ++
Sbjct: 79 APEPKIVVALGNCPISGDVFNQEGGSVYAPVSDFIPVDAEVPGCPPRPSEILEAIL 134
>gb|AAB88386.1| (AF034788) formate hydrogenlyase subunit 7 [Methanococcus
maripaludis]
Length = 147
Score = 125 bits (312), Expect = 2e-28
Identities = 61/132 (46%), Positives = 86/132 (64%), Gaps = 8/132 (6%)
Query: 32 VFHVNSGSCNGCDIEII-AALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKL 90
V V +G CNGCDIE++ L+P YDAE++ V L +PR AD+L+VTG VT +K
Sbjct: 13 VMLVYTGGCNGCDIEVVNCVLSPFYDAEQYNVFLTWNPREADVLVVTGCVTKAVSASLKK 72
Query: 91 VYEQTPEPKIVIAIGSCPTGGSVFYE-------SPFTNAPLDRVIPVDVFVPGCPPRPEA 143
+Y++ PEPK V+A G+C G V+ S F + P++ +IPVD+ VPGCPPRPE
Sbjct: 73 IYDEIPEPKAVVAAGACALMGGVYNNIGADLGTSTFIDGPVENIIPVDIKVPGCPPRPED 132
Query: 144 ILHGVVLALEKL 155
++ G+V AL K+
Sbjct: 133 VITGIVKALPKI 144
>pir||E69032 formate hydrogenlyase, subunit 7 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622351|gb|AAB85728.1| (AE000891) formate
hydrogenlyase, subunit 7 [Methanobacterium
thermoautotrophicum]
Length = 148
Score = 125 bits (312), Expect = 2e-28
Identities = 65/128 (50%), Positives = 83/128 (64%), Gaps = 7/128 (5%)
Query: 35 VNSGSCNGCDIEII-AALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYE 93
V +G CNGCDIEI+ A +P+YDAE++ + L +PR AD+L+VTGPVT Q+ E +K +Y
Sbjct: 17 VYTGGCNGCDIEIVNAVFSPKYDAEQYKIFLTWNPREADVLIVTGPVTKQNEEPLKAIYN 76
Query: 94 QTPEPKIVIAIGSCPTGGSVF------YESPFTNAPLDRVIPVDVFVPGCPPRPEAILHG 147
PEPK VIA G+C G V+ S P+D+VIPVD VPGC RPE +L G
Sbjct: 77 AIPEPKAVIAAGACALMGGVYKNIHGDIPSEEICGPVDKVIPVDAKVPGCAVRPEDVLAG 136
Query: 148 VVLALEKL 155
V AL KL
Sbjct: 137 AVAALPKL 144
>emb|CAB52790.1| (AJ243656) hydrogenase small subunit [Methanobacterium
thermoautotrophicum]
Length = 148
Score = 123 bits (307), Expect = 9e-28
Identities = 65/128 (50%), Positives = 83/128 (64%), Gaps = 7/128 (5%)
Query: 35 VNSGSCNGCDIEII-AALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYE 93
V +G CNGCDIEI+ A L+P+YDAE++ + L +PR AD+L+VTGPVT Q+ +K +Y
Sbjct: 17 VYTGGCNGCDIEIVNAVLSPKYDAEQYKIFLTWNPREADVLIVTGPVTKQNEGPLKEIYN 76
Query: 94 QTPEPKIVIAIGSCPTGGSVF------YESPFTNAPLDRVIPVDVFVPGCPPRPEAILHG 147
PEPK VIA G+C G V+ S P+D+VIPVD VPGC RPE +L G
Sbjct: 77 AIPEPKAVIAAGACALMGGVYKNIHGDIPSEEICGPVDKVIPVDAKVPGCAVRPEDVLAG 136
Query: 148 VVLALEKL 155
V AL KL
Sbjct: 137 AVAALPKL 144
>pir||B64470 formate hydrogenlyase, subunit 7 - Methanococcus jannaschii
>gi|1592007|gb|AAB99371.1| (U67576) formate
hydrogenlyase, subunit 7 [Methanococcus jannaschii]
Length = 151
Score = 123 bits (306), Expect = 1e-27
Identities = 63/132 (47%), Positives = 86/132 (64%), Gaps = 8/132 (6%)
Query: 32 VFHVNSGSCNGCDIEIIAAL-TPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKL 90
V V +G CN CDIE++ A+ +P YDAE++ V L +PR ADIL+VTG VT E ++
Sbjct: 16 VMLVYTGGCNACDIEVVNAIFSPFYDAEQYNVFLTFNPREADILVVTGCVTKVVAESLRK 75
Query: 91 VYEQTPEPKIVIAIGSCPTGGSVFYE-------SPFTNAPLDRVIPVDVFVPGCPPRPEA 143
+YE+ PEPK V+A+G+C G V+ S F P++ +IPVDV VPGC PRPE
Sbjct: 76 IYEKIPEPKAVVAVGACALMGGVYKNIGGDLGTSDFVAGPVENIIPVDVKVPGCAPRPED 135
Query: 144 ILHGVVLALEKL 155
I+ G+V AL K+
Sbjct: 136 IIAGIVKALPKV 147
>pir||D72281 hypothetical protein TM1214 - Thermotoga maritima (strain MSB8)
>gi|4981767|gb|AAD36289.1|AE001778_10 (AE001778) NADH
dehydrogenase, putative [Thermotoga maritima]
Length = 178
Score = 121 bits (301), Expect = 4e-27
Identities = 63/148 (42%), Positives = 89/148 (59%), Gaps = 7/148 (4%)
Query: 11 ERKRLERRIAQLCRFIGRSPWVFHVNSGSCNGCD-IEIIAALTPRYDAERFGVKLVGSPR 69
+ + + RIA R RS W+ H C GC +E+ ++T R+D ERFG+ + +PR
Sbjct: 2 KERSIWERIADNLR--SRSIWMLHY----CTGCGAVELPPSMTSRFDMERFGIAPMATPR 55
Query: 70 HADILLVTGPVTNQSLERVKLVYEQTPEPKIVIAIGSCPTGGSVFYESPFTNAPLDRVIP 129
ADILL+TG + ++L RV YEQ P+PK V+ GSC G ++++S T LD IP
Sbjct: 56 QADILLITGYLNTKTLRRVIYTYEQMPDPKYVVGFGSCTINGGIYFDSYATVNRLDYYIP 115
Query: 130 VDVFVPGCPPRPEAILHGVVLALEKLAK 157
VDV++ GC PRPEAIL +EK+ K
Sbjct: 116 VDVYIAGCMPRPEAILEAFNYLMEKIRK 143
>pir||C70850 probable oxidoreductase subunit - Mycobacterium tuberculosis
(strain H37RV) >gi|2808739|emb|CAA16263.1| (AL021428)
hypothetical protein Rv0082 [Mycobacterium tuberculosis]
Length = 159
Score = 120 bits (297), Expect = 1e-26
Identities = 56/112 (50%), Positives = 73/112 (65%)
Query: 34 HVNSGSCNGCDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYE 93
HV++GSCNGC++EI A P YDAERFG +LV SP+HAD LLVTG VT+ ++ E
Sbjct: 39 HVDAGSCNGCEVEISGAFGPVYDAERFGARLVASPQHADALLVTGVVTHNMAGPLRKTLE 98
Query: 94 QTPEPKIVIAIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAIL 145
TP P++VIA G C VF ++ + V+PVDV + GCPP P AI+
Sbjct: 99 ATPRPRVVIACGDCALNRGVFADAYGVVGAVGEVVPVDVEIAGCPPTPAAIM 150
>sp|O68853|NUB1_RHIME NADH DEHYDROGENASE I CHAIN B 1 (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN B 1) >gi|5650735|emb|CAB51621.1| (AJ245398) nuoB1
[Sinorhizobium meliloti]
Length = 192
Score = 118 bits (292), Expect = 5e-26
Identities = 52/115 (45%), Positives = 78/115 (67%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E++ PRYDAERFG SPR +D+++V G +TN+ ++ VY+Q PEP+ VI
Sbjct: 72 CAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVI 131
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAK 157
++GSC GG ++ S DRV+PVD++VPGCPP EA+L+GV+L +K+ +
Sbjct: 132 SMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRR 186
>gb|AAC12755.1| (AF055637) NADH-ubiqionone oxidoreductase subunit NuoB
[Sinorhizobium meliloti]
Length = 165
Score = 118 bits (292), Expect = 5e-26
Identities = 52/115 (45%), Positives = 78/115 (67%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E++ PRYDAERFG SPR +D+++V G +TN+ ++ VY+Q PEP+ VI
Sbjct: 45 CAVEMMQMSMPRYDAERFGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVI 104
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAK 157
++GSC GG ++ S DRV+PVD++VPGCPP EA+L+GV+L +K+ +
Sbjct: 105 SMGSCANGGGYYHYSYSVVRGCDRVVPVDIYVPGCPPTAEALLYGVLLLQKKIRR 159
>gb|AAF65732.1|AF228525_2 (AF228525) F420H2 dehydrogenase subunit FpoB [Methanosarcina mazei]
Length = 184
Score = 117 bits (290), Expect = 9e-26
Identities = 52/113 (46%), Positives = 75/113 (66%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E+IA YD +RFG+ SPRHAD+++++G VT + L +K +++Q P PK VI
Sbjct: 62 CGVEMIATGCAHYDTDRFGIIPRNSPRHADVMIISGYVTKKYLPALKRLWDQMPAPKWVI 121
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKL 155
A+G C G FYES T +D + P+DV++PGCPPRPEA++ G V EK+
Sbjct: 122 AMGDCAISGGPFYESYSTVQNIDEIFPIDVYIPGCPPRPEALIQGFVELQEKI 174
>emb|CAC08301.1| (AL392148) NADH dehydrogenase subunit [Streptomyces coelicolor]
Length = 232
Score = 117 bits (290), Expect = 9e-26
Identities = 61/135 (45%), Positives = 84/135 (62%), Gaps = 4/135 (2%)
Query: 29 SPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGV-KLVGSPRHADILLVTGPVTNQSLER 87
S WVF+ C IE IAA R+D R GV PR AD+++V+G VT++
Sbjct: 42 SLWVFNFGLACCA---IEFIAASMARHDFIRLGVIPFAPGPRQADLMVVSGTVTDKMAPA 98
Query: 88 VKLVYEQTPEPKIVIAIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHG 147
VK +YEQ PEPK VI+ G+C G +++S +D++IPVDV+VPGCPPRPEA+L G
Sbjct: 99 VKRLYEQMPEPKYVISFGACSNCGGPYWDSYSVTKGVDQIIPVDVYVPGCPPRPEALLQG 158
Query: 148 VVLALEKLAKMLKGE 162
++ EK+A+ GE
Sbjct: 159 ILKLQEKIARESLGE 173
>gb|AAF48552.1| (AE003500) CG9172 gene product [Drosophila melanogaster]
Length = 221
Score = 116 bits (288), Expect = 2e-25
Identities = 53/118 (44%), Positives = 79/118 (66%), Gaps = 1/118 (0%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E++ PRYD +R+GV SPR AD+++V G +TN+ ++ VY+Q PEP+ VI
Sbjct: 97 CAVEMMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYDQMPEPRWVI 156
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKMLK 160
++GSC GG ++ S DR+IPVD++VPGCPP EA+++G VL L+K K +K
Sbjct: 157 SMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMYG-VLQLQKKVKRMK 213
>pir||D71019 probable NADH-ubiquinone oxidoreductase subunit - Pyrococcus
horikoshii >gi|3257873|dbj|BAA30556.1| (AP000006) 195aa
long hypothetical NADH-ubiquinone oxidoreductase subunit
[Pyrococcus horikoshii]
Length = 195
Score = 116 bits (287), Expect = 2e-25
Identities = 55/117 (47%), Positives = 79/117 (67%), Gaps = 1/117 (0%)
Query: 40 CNGCD-IEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEP 98
C GC IE+ +T RYD ERFG+ SPR D+ L+TG VT ++L+R+ + YE +P+P
Sbjct: 28 CTGCGGIEMPPLMTARYDIERFGMLSDPSPRQYDLFLITGYVTPKTLKRIIITYELSPDP 87
Query: 99 KIVIAIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKL 155
K V+A GSCP G V+++S T LD+ IPVDVF+ GC PRPEA++ G+ ++ +
Sbjct: 88 KYVLAHGSCPINGGVYWDSYNTVKHLDKYIPVDVFIAGCMPRPEAVMDGIYKLMDMI 144
>pir||A75114 NADH dehydrogenase I chain B PAB0493 - Pyrococcus abyssi (strain
Orsay) >gi|5458137|emb|CAB49626.1| (AJ248285) NADH
dehydrogenase I, subunit B [Pyrococcus abyssi]
Length = 195
Score = 115 bits (284), Expect = 4e-25
Identities = 55/117 (47%), Positives = 78/117 (66%), Gaps = 1/117 (0%)
Query: 40 CNGCD-IEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEP 98
C GC IE+ +T RYD ERFG+ SPR D+ L+TG VT ++L+R+ + YE +P+P
Sbjct: 28 CTGCGGIEMPPLMTSRYDIERFGMIPDPSPRQYDLFLITGYVTPKTLKRIIITYELSPDP 87
Query: 99 KIVIAIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKL 155
K V+A GSCP G ++++S LD+ IPVDVF+ GC PRPEA+L G+ +E +
Sbjct: 88 KYVLAHGSCPLNGGIYWDSYNAIKHLDKYIPVDVFIAGCMPRPEAVLDGIYKLMEMI 144
>sp|P42026|NUKM_BOVIN NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNIT PRECURSOR (COMPLEX
I-20KD) (CI-20KD) (PSST SUBUNIT) >gi|108826|pir||S22371
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain PSST
- bovine >gi|599691|emb|CAA46154.1| (X65020) PSST
subunit of the NADH: ubiquinone oxidoreductase complex
[Bos taurus]
Length = 216
Score = 114 bits (283), Expect = 6e-25
Identities = 47/115 (40%), Positives = 77/115 (66%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E++ PRYD +RFGV SPR +D+++V G +TN+ ++ VY+Q PEP+ V+
Sbjct: 92 CAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVV 151
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAK 157
++GSC GG ++ S DR++PVD++VPGCPP EA+L+G++ +K+ +
Sbjct: 152 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKR 206
>gb|AAF56901.1| (AE003770) CG2014 gene product [Drosophila melanogaster]
Length = 212
Score = 114 bits (283), Expect = 6e-25
Identities = 48/116 (41%), Positives = 77/116 (66%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E++ PRYD +R+GV SPR AD+L+V G +TN+ + +Y+Q PEP+ VI
Sbjct: 88 CAVEMMHIAAPRYDMDRYGVVFRASPRQADVLIVAGTLTNKMAPAFRKIYDQMPEPRWVI 147
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKM 158
++GSC GG ++ S DR++PVD++VPGCPP EA+++G++ +K+ +M
Sbjct: 148 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALMYGILQLQKKVKRM 203
>gb|AAC27669.1| (AC005329) NUKM_HUMAN, partial CDS; COMPLE; CI-20KD; PSST SUBUNIT
[Homo sapiens]
Length = 158
Score = 113 bits (281), Expect = 1e-24
Identities = 46/115 (40%), Positives = 76/115 (66%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E++ PRYD +RFGV SPR +D+++V G +TN+ ++ VY+Q PEP+ V+
Sbjct: 34 CAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVV 93
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAK 157
++GSC GG ++ S DR++PVD+++PGCPP EA+L+G++ K+ +
Sbjct: 94 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKR 148
>sp|O75251|NUKM_HUMAN NADH-UBIQUINONE OXIDOREDUCTASE 20 KDA SUBUNIT PRECURSOR (COMPLEX
I-20KD) (CI-20KD) (PSST SUBUNIT)
Length = 213
Score = 113 bits (281), Expect = 1e-24
Identities = 46/115 (40%), Positives = 76/115 (66%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E++ PRYD +RFGV SPR +D+++V G +TN+ ++ VY+Q PEP+ V+
Sbjct: 89 CAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVV 148
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAK 157
++GSC GG ++ S DR++PVD+++PGCPP EA+L+G++ K+ +
Sbjct: 149 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGILQLQRKIKR 203
>gi|11466592 NADH dehydrogenase subunit 10 [Rhodomonas salina]
>gi|10444179|gb|AAG17753.1|AF288090_29 (AF288090) NADH
dehydrogenase subunit 10 [Rhodomonas salina]
Length = 158
Score = 111 bits (276), Expect = 4e-24
Identities = 53/118 (44%), Positives = 78/118 (65%), Gaps = 1/118 (0%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E++ A RYD +RFG+ SPR +DI++V G +TN+ ++ VY+Q PEP+ VI
Sbjct: 34 CAVEMMHAGASRYDFDRFGIIFRASPRQSDIMIVAGTLTNKMAPALRKVYDQMPEPRWVI 93
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKMLK 160
++GSC GG ++ S D+++PVDVFVPGCPP EA+L+G +L L+K K K
Sbjct: 94 SMGSCANGGGYYHFSYSVVRGCDKIVPVDVFVPGCPPTAEALLYG-ILQLQKKIKRTK 150
>sp|P29918|NQO6_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6 (NADH DEHYDROGENASE 1, CHAIN
6) (NDH-1, CHAIN 6) >gi|281482|pir||E42573 psbG homolog
protein - Paracoccus denitrificans
Length = 173
Score = 111 bits (276), Expect = 4e-24
Identities = 47/107 (43%), Positives = 72/107 (66%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E++ PRYD ERFG SPR +D+++V G +TN+ ++ VY+Q PEP+ VI
Sbjct: 54 CAVEMMQTSMPRYDLERFGTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVI 113
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVV 149
++GSC GG ++ S DR++PVD++VPGCPP EA+L+G++
Sbjct: 114 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIL 160
>gb|AAA03036.1| (M93015) NADH dehydrogenase [Paracoccus denitrificans]
Length = 174
Score = 111 bits (276), Expect = 4e-24
Identities = 47/107 (43%), Positives = 72/107 (66%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E++ PRYD ERFG SPR +D+++V G +TN+ ++ VY+Q PEP+ VI
Sbjct: 54 CAVEMMQTSMPRYDLERFGTAPRASPRQSDLMIVAGTLTNKMAPALRKVYDQMPEPRYVI 113
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVV 149
++GSC GG ++ S DR++PVD++VPGCPP EA+L+G++
Sbjct: 114 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGIL 160
>sp|Q94360|NUKM_CAEEL PROBABLE NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNIT PRECURSOR
(COMPLEX I-20KD) (CI-20KD) >gi|7509195|pir||T26329
hypothetical protein W10D5.2 - Caenorhabditis elegans
>gi|3880584|emb|CAB02132.1| (Z79758) Similarity to
Bovine NADH-ubiquinone oxidoreductase 20 KD subunit
(SW:NUKM_BOVIN), contains similarity to Pfam domain:
PF01058 (NADH ubiquinone oxidoreductase, 20 Kd subunit),
Score=224.4, E-value=5.4e-64, N=1~cDNA EST yk98a6.3
comes from this>
Length = 199
Score = 111 bits (276), Expect = 4e-24
Identities = 50/121 (41%), Positives = 78/121 (64%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E++ PRYD +R+GV SPR AD++ V G VTN+ ++ +Y+Q PE K VI
Sbjct: 75 CAVEMMHFAAPRYDMDRYGVVFRASPRQADLIFVAGTVTNKMAPALRRIYDQMPEAKWVI 134
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKMLKGE 162
++GSC GG ++ + DRVIPVD++VPGCPP EA+L+GV+ +K+ + + +
Sbjct: 135 SMGSCANGGGYYHYAYSVLRGCDRVIPVDIYVPGCPPTAEALLYGVLQLQKKIKRKREAQ 194
Query: 163 V 163
+
Sbjct: 195 L 195
>sp|O84970|NUOB_RHOCA NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
B) >gi|3282560|gb|AAC24986.1| (AF029365) NUOB
[Rhodobacter capsulatus]
Length = 177
Score = 111 bits (275), Expect = 5e-24
Identities = 46/115 (40%), Positives = 75/115 (65%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E++ PRYD ER+G SPR +D+++V G +TN+ ++ VY+Q PEP+ VI
Sbjct: 57 CAVEMMHTAMPRYDVERYGFAPRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVI 116
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAK 157
++GSC GG ++ S DR++PVD++VPGCPP EA+++G++ K+ +
Sbjct: 117 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPSAEALMYGILQLQRKIRR 171
>sp|P17062|NUJC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K HOMOLOG 2
>gi|72691|pir||F2YBG2 hypothetical ndhK homolog -
Synechocystis sp. (strain PCC 6803)
>gi|48068|emb|CAA35236.1| (X17359) put. psbG2 product
(AA 1-219) [Synechocystis PCC6803]
Length = 219
Score = 109 bits (271), Expect = 1e-23
Identities = 54/121 (44%), Positives = 78/121 (63%), Gaps = 5/121 (4%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E +AA PR+D ERFG +PR AD+++ G +T + + +YEQ PEPK VI
Sbjct: 54 CFMEFMAAFGPRFDLERFGSIPRATPRQADLMITAGTITMKYAPALVQLYEQIPEPKYVI 113
Query: 103 AIGSCP-TGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKMLKG 161
A+G+C T G +SP +D++IPVDV++PGCPPRPEA++ G++ KL K + G
Sbjct: 114 AMGACTITAGMFSADSPTAVRGVDKLIPVDVYIPGCPPRPEAVIDGII----KLRKKVAG 169
Query: 162 E 162
E
Sbjct: 170 E 170
>sp|Q43844|NUKM_SOLTU NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNIT PRECURSOR (COMPLEX
I-20KD) (CI-20KD) >gi|7443153|pir||T07603 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) 22K chain -
potato >gi|1235607|emb|CAA65451.1| (X96671)
NADH-ubiquinone oxidoreductase [Solanum tuberosum]
Length = 213
Score = 109 bits (270), Expect = 2e-23
Identities = 47/113 (41%), Positives = 76/113 (66%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E++ A RYD +RFG+ SPR +D+++V G +TN+ ++ VY+Q PEP+ VI
Sbjct: 89 CAVEMMHAGAARYDFDRFGIIFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVI 148
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKL 155
++GSC GG ++ S DR++PVD++VPGCPP EA+L+G++ +K+
Sbjct: 149 SMGSCANGGGYYHYSYAVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKI 201
>sp|O47950|NUKM_NEUCR PROBABLE NADH-UBIQUINONE OXIDOREDUCTASE 19.3 KDA SUBUNIT PRECURSOR
(COMPLEX I-19.3KD) (CI-19.3KD)
>gi|2764632|emb|CAA04802.1| (AJ001520) 19.3kD
iron-sulfur subunit of mitochondrial complex I
[Neurospora crassa]
Length = 226
Score = 109 bits (269), Expect = 3e-23
Identities = 45/113 (39%), Positives = 74/113 (64%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E++ TPRYD +R G+ SPR +D+++V G +TN+ ++ VY+Q P+P+ VI
Sbjct: 102 CAVEMMHLSTPRYDQDRLGIIFRASPRQSDVMIVAGTLTNKMAPALRQVYDQMPDPRWVI 161
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKL 155
++GSC GG ++ S DR++PVD++VPGCPP EA+++G+ K+
Sbjct: 162 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTSEALMYGIFQLQRKM 214
>sp|P56897|NUB2_RHIME NADH DEHYDROGENASE I CHAIN B 2 (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN B 2) >gi|5650745|emb|CAB51630.1| (AJ245399)
putative NADH-ubiquinone oxidoreductase subunit
[Sinorhizobium meliloti]
Length = 167
Score = 109 bits (269), Expect = 3e-23
Identities = 53/115 (46%), Positives = 75/115 (65%), Gaps = 1/115 (0%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C IE+I+A RYD +RFGV SPR +D++++ G VT + V+ +Y+Q PEP+ VI
Sbjct: 39 CAIEMISAGCARYDLDRFGVVFRPSPRQSDVMIIAGTVTRKFAPVVRRLYDQMPEPRWVI 98
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAK 157
A+G+C G V Y + + +PVDV VPGCPPRPEA++HG +L EK+ K
Sbjct: 99 AMGTCAISGGV-YNTYAVVQGSETFVPVDVHVPGCPPRPEALMHGFLLLQEKIKK 152
>emb|CAB65525.1| (AJ250340) subunit NUKM of protein NADH:Ubiquinone Oxidoreductase
(Complex I) [Yarrowia lipolytica]
Length = 210
Score = 108 bits (268), Expect = 3e-23
Identities = 48/113 (42%), Positives = 73/113 (64%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E++ PRYD +R G+ SPR +DI++V G +TN+ ++ VY+Q PEP+ VI
Sbjct: 86 CAVEMMHVSAPRYDQDRLGIIFRASPRQSDIMIVAGTLTNKMAPVLRQVYDQMPEPRWVI 145
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKL 155
++GSC GG ++ S DR++PVDV+VPGCPP EA+++GV K+
Sbjct: 146 SMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGCPPTSEALMYGVFQLQRKM 198
>gb|AAA79257.1| (M26930) photosystem II protein G [Paramecium aurelia]
Length = 156
Score = 108 bits (266), Expect = 6e-23
Identities = 49/117 (41%), Positives = 75/117 (63%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E++ A RYD +RFGV +PR AD+++V G VTN+ ++ +Y+QT +PK V+
Sbjct: 34 CALEMMHATVSRYDFDRFGVIFRATPRQADLIIVAGTVTNKMAPALRRLYDQTADPKWVL 93
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKML 159
++GSC GG ++ S D++IPVD+FVPGCPP EA+ GV+ + L K +
Sbjct: 94 SMGSCANGGGYYHYSYAVVKGCDKIIPVDIFVPGCPPTAEALFFGVLQLQKTLMKTI 150
>gb|AAF91429.1|AF279902_1 (AF279902) NADH-ubiquinone oxidoreductase subunit PSST [Lupinus
luteus]
Length = 210
Score = 108 bits (266), Expect = 6e-23
Identities = 46/113 (40%), Positives = 75/113 (65%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E++ RYD +RFG+ SPR +D ++V G +TN+ ++ VY+Q PEP+ VI
Sbjct: 86 CAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVI 145
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKL 155
++GSC GG ++ S + DR++PVD++VPGCPP EA+L+G++ +K+
Sbjct: 146 SMGSCANGGGYYHYSYYVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKI 198
>sp|Q9XBL7|NUKC_ANAVA NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K (NDH-K)
>gi|5139342|emb|CAB45647.1| (AJ012181) NDH-K protein
[Anabaena variabilis]
Length = 245
Score = 107 bits (265), Expect = 7e-23
Identities = 51/115 (44%), Positives = 76/115 (65%), Gaps = 1/115 (0%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C IE A + R+D +RFG+ SPR AD+++ G +T + ++ +YEQ PEPK VI
Sbjct: 59 CFIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTITMKMAPQLVRLYEQMPEPKYVI 118
Query: 103 AIGSCP-TGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLA 156
A+G+C TGG +SP +D++IPVDV++PGCPPRPEAI+ ++ +K+A
Sbjct: 119 AMGACTITGGMFSVDSPTAVRGVDKLIPVDVYLPGCPPRPEAIIDAIIKLRKKIA 173
>gb|AAF03193.1|AF110138_25 (AF110138) NADH dehydrogenase subunit 10 [Nephroselmis olivacea]
Length = 158
Score = 107 bits (265), Expect = 7e-23
Identities = 45/115 (39%), Positives = 76/115 (65%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E++ RYD +RFG+ SPR +D+++V G +TN+ ++ VY+Q PEP+ V+
Sbjct: 34 CAVEMMHCGASRYDLDRFGIIFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRWVV 93
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAK 157
++GSC GG ++ S DR++PVD++VPGCPP EA+L+G++ +K+ +
Sbjct: 94 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIQR 148
>pir||F81992 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain B NMA0018
[imported] - Neisseria meningitidis (group A strain
Z2491) >gi|7378796|emb|CAB83338.1| (AL162752) NADH
dehydrogenase I chain B [Neisseria meningitidis Z2491]
Length = 160
Score = 107 bits (265), Expect = 7e-23
Identities = 47/115 (40%), Positives = 76/115 (65%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E++ A RYD +RFG+ SPR AD+++V G +TN+ ++ VY+Q EP+ V+
Sbjct: 38 CAVEMMHAGMARYDLDRFGIIFRPSPRQADLMIVAGTLTNKMASALRRVYDQLAEPRWVL 97
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAK 157
++GSC GG ++ S DRV+PVDV+VPGCPP EA+++G++ +K+ +
Sbjct: 98 SMGSCANGGGYYHYSYSVVRGADRVVPVDVYVPGCPPTAEALIYGLIQLQQKIKR 152
>pir||H81221 NADH dehydrogenase I, B chain NMB0242 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225464|gb|AAF40696.1| (AE002381) NADH dehydrogenase
I, B subunit [Neisseria meningitidis MC58]
Length = 160
Score = 107 bits (264), Expect = 1e-22
Identities = 47/115 (40%), Positives = 76/115 (65%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E++ A RYD +RFG+ SPR AD+++V G +TN+ ++ VY+Q EP+ V+
Sbjct: 38 CAVEMMHAGMARYDLDRFGIIFRPSPRQADLMIVAGTLTNKMAPALRRVYDQLAEPRWVL 97
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAK 157
++GSC GG ++ S DRV+PVDV+VPGCPP EA+++G++ +K+ +
Sbjct: 98 SMGSCANGGGYYHYSYSVVRGADRVVPVDVYVPGCPPTAEALIYGLIQLQQKIKR 152
>gi|11466535 NADH dehydrogenase, subunit 10 [Reclinomonas americana]
>gi|6647649|sp|O21272|NUKM_RECAM NADH-UBIQUINONE
OXIDOREDUCTASE 20 KDA SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 10) >gi|7443157|pir||S78166 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 10 - Reclinomonas
americana (ATCC 50394) mitochondrion
>gi|2258365|gb|AAD11899.1| (AF007261) NADH
dehydrogenase, subunit 10 [Reclinomonas americana]
Length = 182
Score = 106 bits (263), Expect = 1e-22
Identities = 45/118 (38%), Positives = 77/118 (65%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E++ + RYD +RFG+ SPR +D+++V G +TN+ ++ VY+Q EP+ V+
Sbjct: 58 CAVEMMHSAASRYDLDRFGIIFRPSPRQSDVMIVAGTLTNKMAPALRKVYDQMSEPRWVV 117
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKMLK 160
++GSC GG ++ S DR++PVD++VPGCPP EA+L+G++ +K+ + K
Sbjct: 118 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKIKRSRK 175
>sp|Q9ZDH2|NUOB_RICPR NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
B) >gi|7443155|pir||F71692 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain B RP356 - Rickettsia
prowazekii >gi|3860916|emb|CAA14816.1| (AJ235271) NADH
DEHYDROGENASE I CHAIN B (nuoB) [Rickettsia prowazekii]
Length = 174
Score = 106 bits (263), Expect = 1e-22
Identities = 46/115 (40%), Positives = 76/115 (66%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E++ A RYD +RFG+ SPR +D+++V G +TN+ ++ VY+Q EPK V+
Sbjct: 48 CAVEMMQAAASRYDMDRFGMLFRPSPRQSDLMIVAGTLTNKMAPALRKVYDQMTEPKWVL 107
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAK 157
++GSC GG ++ S DR++PVDV+VPGCPP EA+++G++ +K+ +
Sbjct: 108 SMGSCANGGGYYHFSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGLMQLQKKIKR 162
>emb|CAB45640.1| (AJ012180) NDH-K protein [Anabaena PCC7120]
Length = 245
Score = 106 bits (263), Expect = 1e-22
Identities = 51/115 (44%), Positives = 76/115 (65%), Gaps = 1/115 (0%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C IE A + R+D +RFG+ SPR AD+++ G +T + ++ +YEQ PEPK VI
Sbjct: 59 CFIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTITMKMAPQLVRLYEQMPEPKYVI 118
Query: 103 AIGSCP-TGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLA 156
A+G+C TGG +SP +D++IPVDV++PGCPPRPEAI+ ++ +K+A
Sbjct: 119 AMGACTITGGMFSVDSPTAVRGVDKLIPVDVYLPGCPPRPEAIIDAMIKLRKKIA 173
>sp|Q44240|NUKC_ANASP NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K >gi|7443152|pir||S74216
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ndhK
- Anabaena sp. (PCC 7120) >gi|1173548|gb|AAC44353.1|
(U31208) NADH dehydrogenase type 1 subunit [Anabaena
sp.]
Length = 245
Score = 106 bits (262), Expect = 2e-22
Identities = 51/115 (44%), Positives = 76/115 (65%), Gaps = 1/115 (0%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C IE A + R+D +RFG+ SPR AD+++ G +T + ++ +YE+ PEPK VI
Sbjct: 59 CFIEFAALIGSRFDFDRFGLIPRSSPRQADLIITAGTITMKMAPQMVRLYEKMPEPKYVI 118
Query: 103 AIGSCP-TGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLA 156
A+G+C TGG ESP +D++IPVDV++PGCPPRPEAI+ ++ +K+A
Sbjct: 119 AMGACTITGGMFSVESPTAVRGVDKLIPVDVYLPGCPPRPEAIIDAMIKLRKKIA 173
>gi|11466261 NADH dehydrogenase subunit 10 [Tetrahymena pyriformis]
>gi|5306137|gb|AAD41921.1|AF160864_9 (AF160864) NADH
dehydrogenase subunit 10 [Tetrahymena pyriformis]
Length = 162
Score = 106 bits (262), Expect = 2e-22
Identities = 54/128 (42%), Positives = 82/128 (63%), Gaps = 6/128 (4%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E++ A RYD +RFGV +PR AD++LV G +TN+ ++ +YEQT +PK V+
Sbjct: 32 CAVEMMHATVSRYDFDRFGVIFRATPRQADLILVAGTLTNKMAPGLRRLYEQTLDPKWVL 91
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKMLKGE 162
++GSC GG ++ S +R+IPVD++VPGCPP EA++ GV+ +L K L +
Sbjct: 92 SMGSCANGGGYYHYSYSVVRGCNRIIPVDIYVPGCPPTAEALMFGVL----QLQKSLYRQ 147
Query: 163 VPPEEGEE 170
V EGE+
Sbjct: 148 V--NEGEK 153
>sp|P42027|NUKM_BRAOL NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNIT PRECURSOR (COMPLEX
I-20KD) (CI-20KD) >gi|629601|pir||S48826 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain PSST
precursor - wild cabbage >gi|562282|emb|CAA57725.1|
(X82274) PSST subunit of NADH: ubiquinone oxidoreductase
[Brassica oleracea]
Length = 215
Score = 106 bits (261), Expect = 2e-22
Identities = 46/113 (40%), Positives = 74/113 (64%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E++ RYD +RFG+ SPR +D ++V G +TN+ ++ VY+Q PEP+ VI
Sbjct: 91 CAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVI 150
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKL 155
++GSC GG ++ S DR++PVD++VPGCPP EA+L+G++ +K+
Sbjct: 151 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKI 203
>sp|Q42577|NUKM_ARATH NADH-UBIQUINONE OXIDOREDUCTASE 20 KD SUBUNIT PRECURSOR (COMPLEX
I-20KD) (CI-20KD) >gi|1084345|pir||S52286 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain PSST
precursor - Arabidopsis thaliana
>gi|643090|emb|CAA58887.1| (X84078) NADH dehydrogenase
[Arabidopsis thaliana] >gi|7573391|emb|CAB87695.1|
(AL163814) NADH dehydrogenase (ubiquinone) [Arabidopsis
thaliana]
Length = 218
Score = 106 bits (261), Expect = 2e-22
Identities = 46/113 (40%), Positives = 74/113 (64%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E++ RYD +RFG+ SPR +D ++V G +TN+ ++ VY+Q PEP+ VI
Sbjct: 94 CAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVI 153
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKL 155
++GSC GG ++ S DR++PVD++VPGCPP EA+L+G++ +K+
Sbjct: 154 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKI 206
>pir||T44818 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain PSST precursor
[imported] - yellow lupine >gi|6007781|gb|AAF01037.1|
(AF185271) NADH ubiquinone oxidoreductase PSST subunit
[Lupinus luteus]
Length = 213
Score = 106 bits (261), Expect = 2e-22
Identities = 46/113 (40%), Positives = 74/113 (64%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E++ RYD +RFG+ SPR +D ++V G +TN+ ++ VY+Q PEP+ VI
Sbjct: 89 CAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVI 148
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKL 155
++GSC GG ++ S DR++PVD++VPGCPP EA+L+G++ +K+
Sbjct: 149 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKI 201
>gb|AAF91434.1| (AF281035) NADH-ubiquinone oxidoreductase subunit PSST [Lupinus
luteus]
Length = 192
Score = 106 bits (261), Expect = 2e-22
Identities = 46/113 (40%), Positives = 74/113 (64%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E++ RYD +RFG+ SPR +D ++V G +TN+ ++ VY+Q PEP+ VI
Sbjct: 68 CAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVI 127
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKL 155
++GSC GG ++ S DR++PVD++VPGCPP EA+L+G++ +K+
Sbjct: 128 SMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGLLQLQKKI 180
>gi|7525037 photosystem II G protein [Arabidopsis thaliana]
>gi|6685682|sp|P56756|NUKC_ARATH NADH-PLASTOQUINONE
OXIDOREDUCTASE SUBUNIT K >gi|5881698|dbj|BAA84389.1|
(AP000423) photosystem II G protein [Arabidopsis
thaliana]
Length = 225
Score = 105 bits (260), Expect = 3e-22
Identities = 52/128 (40%), Positives = 82/128 (63%), Gaps = 2/128 (1%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C IE + + R+D +R+G+ SPR AD++L G VT + + +YEQ PEPK VI
Sbjct: 44 CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVI 103
Query: 103 AIGSCP-TGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAK-MLK 160
A+G+C TGG +S T +D++IPVDV++PGCPP+PEA++ + +K+A+ + K
Sbjct: 104 AMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKIAREIYK 163
Query: 161 GEVPPEEG 168
+ P++G
Sbjct: 164 DRIRPQQG 171
>pir||D82821 NADH-ubiquinone oxidoreductase, NQO6 subunit XF0306 [imported] -
Xylella fastidiosa (strain 9a5c)
>gi|9105129|gb|AAF83117.1|AE003884_2 (AE003884)
NADH-ubiquinone oxidoreductase, NQO6 subunit [Xylella
fastidiosa]
Length = 191
Score = 103 bits (254), Expect = 1e-21
Identities = 44/113 (38%), Positives = 74/113 (64%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E++ A R D +R+G+ SPR +D+++V G + N+ ++ VY+Q P+PK VI
Sbjct: 71 CAVEMMHAGAARLDLDRYGIVFRPSPRQSDVMIVAGTLVNKMAPALRKVYDQMPDPKWVI 130
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKL 155
++GSC GG ++ S DR++PVDV+VPGCPP EA+++G++ +K+
Sbjct: 131 SMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGILQLQKKI 183
>gb|AAG19138.1| (AE005011) NADH dehydrogenase/oxidoreductase; NdhG1 [Halobacterium
sp. NRC-1]
Length = 235
Score = 102 bits (253), Expect = 2e-21
Identities = 50/124 (40%), Positives = 76/124 (60%), Gaps = 4/124 (3%)
Query: 43 CDIEIIAALTPRYDAERFGVKLV-GSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIV 101
C IE++ + ++D +RF + SPR AD+++V G + ++ R+K VY+Q PEPK V
Sbjct: 73 CSIEMMHTYSVKHDLDRFHAGVPRASPRQADVMIVPGTIVSKFAPRMKRVYDQMPEPKFV 132
Query: 102 IAIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKMLKG 161
+ +G+C T G F E + VIPVD+ +PGCPPRPEA+++GV E++A G
Sbjct: 133 VNMGNCSTSGGPFQEGYNVVKGAEEVIPVDIHIPGCPPRPEALVYGVAKLQERIA---NG 189
Query: 162 EVPP 165
E P
Sbjct: 190 ESSP 193
>gi|11466706 psbG [Marchantia polymorpha] >gi|131322|sp|P06410|NUKC_MARPO
NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K
>gi|72690|pir||F2LVG psbG protein - liverwort
(Marchantia polymorpha) chloroplast
>gi|11676|emb|CAA28088.1| (X04465) psbG [Marchantia
polymorpha]
Length = 243
Score = 102 bits (252), Expect = 3e-21
Identities = 47/121 (38%), Positives = 77/121 (62%), Gaps = 1/121 (0%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C IE + + R+D +R+G+ SPR AD+++ G VT + + +YEQ PEPK VI
Sbjct: 66 CFIEFASLIGSRFDFDRYGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVI 125
Query: 103 AIGSCPTGGSVFYESPFTNA-PLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKMLKG 161
A+G+C G +F +T +D++IPVD+++PGCPP+PEAI+ ++ +K+A+ +
Sbjct: 126 AMGACTITGGMFSTDSYTTVRGVDKLIPVDIYLPGCPPKPEAIIDAIIKLRKKIAQEIYE 185
Query: 162 E 162
E
Sbjct: 186 E 186
>gi|11466396 subunit K of NADH-ubiquinone oxidoreductase [Mesostigma viride]
>gi|7259539|gb|AAF43840.1|AF166114_52 (AF166114) subunit
K of NADH-ubiquinone oxidoreductase [Mesostigma viride]
Length = 247
Score = 102 bits (252), Expect = 3e-21
Identities = 52/116 (44%), Positives = 75/116 (63%), Gaps = 1/116 (0%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C IE L R+D +RFG+ SPR AD+++ G VT + + +YEQ PEPK VI
Sbjct: 65 CFIEFACLLGSRFDFDRFGLVPRCSPRQADLIITAGTVTMKMAPSLVRLYEQMPEPKYVI 124
Query: 103 AIGSCP-TGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAK 157
A+G+C TGG +S T +D++IPVDV++PGCPP+PEAI+ V+ +K+A+
Sbjct: 125 AMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKVAQ 180
>sp|P19050|NUKC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K HOMOLOG
>gi|79727|pir||S04437 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain ndhK - Synechocystis sp. (strain PCC
6803) >gi|48047|emb|CAA35485.1| (X17439) PSII-G protein
(AA 1 - 248) [Synechocystis PCC6803]
>gi|1653370|dbj|BAA18284.1| (D90913) NADH-ubiquinone
oxidoreductase subunit PsbG [Synechocystis sp.]
Length = 248
Score = 102 bits (251), Expect = 3e-21
Identities = 49/115 (42%), Positives = 73/115 (62%), Gaps = 1/115 (0%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C IE A + R+D +RFG+ SPR AD+++ G +T + + +YE+ PEPK VI
Sbjct: 63 CFIEFAALIGSRFDFDRFGLVPRSSPRQADLIITAGTITMKMAPALVRLYEEMPEPKYVI 122
Query: 103 AIGSCP-TGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLA 156
A+G+C TGG +S +D++IPVDV++PGCPPRPEAI ++ +K+A
Sbjct: 123 AMGACTITGGMFSSDSTTAVRGVDKLIPVDVYIPGCPPRPEAIFDAIIKLRKKVA 177
>sp|P52766|NUKC_LUPLU NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K >gi|7443163|pir||T09637
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ndhK
- yellow lupine chloroplast >gi|881443|gb|AAB86906.1|
(U27654) NADH-ubiquinone oxidoreductase subunit [Lupinus
luteus]
Length = 226
Score = 102 bits (251), Expect = 3e-21
Identities = 53/122 (43%), Positives = 77/122 (62%), Gaps = 5/122 (4%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C IE + + R+D +R+G+ SPR AD++L G VT + + +YEQ PEPK VI
Sbjct: 44 CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVI 103
Query: 103 AIGSCP-TGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKMLKG 161
AIG+C TGG +S T +D++IPVDV++PGCPP+PEA++ A+ KL K +
Sbjct: 104 AIGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVID----AITKLRKKISR 159
Query: 162 EV 163
E+
Sbjct: 160 EI 161
>sp|P95180|NUOB_MYCTU NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
B) >gi|7443159|pir||C70647 probable nuoB protein -
Mycobacterium tuberculosis (strain H37RV)
>gi|1781222|emb|CAB06270.1| (Z83867) nuoB [Mycobacterium
tuberculosis]
Length = 184
Score = 102 bits (251), Expect = 3e-21
Identities = 47/120 (39%), Positives = 76/120 (63%), Gaps = 2/120 (1%)
Query: 43 CDIEIIAALTPRYDAERFGV-KLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIV 101
C IE++A PR+D RFG+ + +PR AD+++V G V+ + ++ +Y+Q EPK V
Sbjct: 38 CAIEMMATAGPRFDIARFGMERFSATPRQADLMIVAGRVSQKMAPVLRQIYDQMAEPKWV 97
Query: 102 IAIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKMLKG 161
+A+G C + G +F +D V+PVD+++PGCPPRPE +LH ++ EK+ +M G
Sbjct: 98 LAMGVCASSGGMFNNYAIVQG-VDHVVPVDIYLPGCPPRPEMLLHAILKLHEKIQQMPLG 156
>gi|11466791 psbG; PSII G protein [Oryza sativa] >gi|131323|sp|P12159|NUKC_ORYSA
NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K
>gi|72688|pir||F2RZG psbG protein - rice chloroplast
>gi|11988|emb|CAA34000.1| (X15901) psbG; PSII G protein
[Oryza sativa] >gi|226609|prf||1603356AF photosystem II
G protein [Oryza sativa]
Length = 246
Score = 101 bits (250), Expect = 4e-21
Identities = 53/122 (43%), Positives = 77/122 (62%), Gaps = 5/122 (4%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C IE + + R+D +R+G+ SPR AD++L G VT + + +YEQ PEPK VI
Sbjct: 65 CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVI 124
Query: 103 AIGSCP-TGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKMLKG 161
A+G+C TGG +S T +D++IPVDV++PGCPP+PEA++ AL KL K +
Sbjct: 125 AMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVID----ALTKLRKKISR 180
Query: 162 EV 163
E+
Sbjct: 181 EI 182
>sp|P26304|NUKC_WHEAT NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K >gi|100799|pir||S09666
psbG protein - wheat chloroplast
>gi|556460|gb|AAA84731.1| (J04954) thylakoid membrane
protein [Triticum aestivum]
Length = 245
Score = 101 bits (250), Expect = 4e-21
Identities = 53/122 (43%), Positives = 77/122 (62%), Gaps = 5/122 (4%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C IE + + R+D +R+G+ SPR AD++L G VT + + +YEQ PEPK VI
Sbjct: 64 CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVI 123
Query: 103 AIGSCP-TGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKMLKG 161
A+G+C TGG +S T +D++IPVDV++PGCPP+PEA++ AL KL K +
Sbjct: 124 AMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVID----ALTKLRKKISR 179
Query: 162 EV 163
E+
Sbjct: 180 EI 181
>gi|11467814 subunit K of NADH-ubiquinone oxidoreductase [Nephroselmis olivacea]
>gi|5880743|gb|AAD54836.1|AF137379_59 (AF137379) subunit
K of NADH-ubiquinone oxidoreductase [Nephroselmis
olivacea]
Length = 237
Score = 101 bits (250), Expect = 4e-21
Identities = 50/116 (43%), Positives = 75/116 (64%), Gaps = 1/116 (0%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C IE + R+D +RFG+ SPR AD+++ G VT + + +YEQ P+PK VI
Sbjct: 56 CFIEFACLIGSRFDFDRFGLVPRSSPRQADLIITAGTVTMKMAPSLVRLYEQMPDPKYVI 115
Query: 103 AIGSCP-TGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAK 157
A+G+C TGG +S T +D++IPVDV++PGCPP+PEAI+ V+ +K+A+
Sbjct: 116 AMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAIIDAVIKLRKKVAQ 171
>gi|11465961 NADH dehydrogenase 27kD subunit [Nicotiana tabacum]
>gi|11837|emb|CAA77357.1| (Z00044) NADH dehydrogenase
27kD subunit [Nicotiana tabacum]
>gi|225205|prf||1211235AK bhpB gene [Nicotiana tabacum]
Length = 284
Score = 101 bits (249), Expect = 6e-21
Identities = 49/118 (41%), Positives = 76/118 (63%), Gaps = 1/118 (0%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C IE + + R+D +R+G+ SPR AD++L G VT + + +YEQ PEPK VI
Sbjct: 103 CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVI 162
Query: 103 AIGSCP-TGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKML 159
A+G+C TGG +S T +D++IPVDV++PGCPP+PEA++ + +K+++ L
Sbjct: 163 AMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISREL 220
>pir||F2ZMG NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ndhK - maize
chloroplast >gi|12427|emb|CAA35482.1| (X17438) PSII-G
protein (AA 1 - 248) [Zea mays]
>gi|552735|gb|AAA84484.1| (M12704) PSII-G [Zea mays]
Length = 248
Score = 101 bits (249), Expect = 6e-21
Identities = 53/122 (43%), Positives = 77/122 (62%), Gaps = 5/122 (4%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C IE + + R+D +R+G+ SPR AD++L G VT + + +YEQ PEPK VI
Sbjct: 65 CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVI 124
Query: 103 AIGSCP-TGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKMLKG 161
A+G+C TGG +S T +D++IPVDV++PGCPP+PEA++ AL KL K +
Sbjct: 125 AMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVID----ALTKLRKKIAR 180
Query: 162 EV 163
E+
Sbjct: 181 EI 182
>sp|P06409|NUKC_TOBAC NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT K >gi|72687|pir||F2NTG
psbG protein - common tobacco chloroplast
Length = 247
Score = 101 bits (249), Expect = 6e-21
Identities = 49/118 (41%), Positives = 76/118 (63%), Gaps = 1/118 (0%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C IE + + R+D +R+G+ SPR AD++L G VT + + +YEQ PEPK VI
Sbjct: 66 CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVI 125
Query: 103 AIGSCP-TGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKML 159
A+G+C TGG +S T +D++IPVDV++PGCPP+PEA++ + +K+++ L
Sbjct: 126 AMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVIDAITKLRKKISREL 183
>gi|11467196 ndhK [Zea mays] >gi|1171864|sp|P06670|NUKC_MAIZE NADH-PLASTOQUINONE
OXIDOREDUCTASE SUBUNIT K >gi|902226|emb|CAA60290.1|
(X86563) ndhK [Zea mays]
Length = 248
Score = 101 bits (249), Expect = 6e-21
Identities = 53/122 (43%), Positives = 77/122 (62%), Gaps = 5/122 (4%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C IE + + R+D +R+G+ SPR AD++L G VT + + +YEQ PEPK VI
Sbjct: 65 CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVI 124
Query: 103 AIGSCP-TGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKMLKG 161
A+G+C TGG +S T +D++IPVDV++PGCPP+PEA++ AL KL K +
Sbjct: 125 AMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVID----ALTKLRKKIAR 180
Query: 162 EV 163
E+
Sbjct: 181 EI 182
>emb|CAA06191.1| (AJ004882) NADH-plastoquinone oxidoreductase subunit, NdhK [Pisum
sativum]
Length = 227
Score = 101 bits (248), Expect = 7e-21
Identities = 52/122 (42%), Positives = 77/122 (62%), Gaps = 5/122 (4%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C IE + + R+D +R+G+ SPR AD++L G VT + + +YEQ PEPK VI
Sbjct: 44 CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVI 103
Query: 103 AIGSCP-TGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKMLKG 161
A+G+C TGG +S T +D++IPVDV++PGCPP+PEA++ A+ KL K +
Sbjct: 104 AMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVID----AITKLRKKISR 159
Query: 162 EV 163
E+
Sbjct: 160 EI 161
>pir||H81252 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain B Cj1578c
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6968995|emb|CAB73566.1| (AL139079) NADH
dehydrogenase I chain B [Campylobacter jejuni]
Length = 167
Score = 101 bits (248), Expect = 7e-21
Identities = 51/132 (38%), Positives = 85/132 (63%), Gaps = 4/132 (3%)
Query: 27 GRSPWVFHVNSG-SCNGCDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSL 85
GRS ++ ++ G +C C IE++AA RYD +RFG SPRH++++++ G + +
Sbjct: 26 GRSNSLWALSYGLAC--CAIEMMAAGGSRYDFDRFGTIFRASPRHSEVMIIAGTLCKKHA 83
Query: 86 ERVKLVYEQTPEPKIVIAIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAIL 145
E + +Y+Q P+PK VI++GSC G +F + T +DR+IPVD++VPGC PRPE+
Sbjct: 84 EFTRRLYDQMPDPKWVISMGSCANTGGMF-NTYSTVQGVDRIIPVDIYVPGCAPRPESFQ 142
Query: 146 HGVVLALEKLAK 157
+++ +K+ K
Sbjct: 143 FALMILQKKIRK 154
>gi|11497532 NADH dehydrogenase 32kDa subunit [Spinacia oleracea]
>gi|7636113|emb|CAB88733.1| (AJ400848) NADH
dehydrogenase 32kDa subunit [Spinacia oleracea]
Length = 281
Score = 101 bits (248), Expect = 7e-21
Identities = 52/122 (42%), Positives = 77/122 (62%), Gaps = 5/122 (4%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C IE + + R+D +R+G+ SPR AD++L G VT + + +YEQ PEPK VI
Sbjct: 98 CFIEFASLIGSRFDFDRYGLVPRASPRQADLILTAGTVTMKMAPSLLRLYEQMPEPKYVI 157
Query: 103 AIGSCP-TGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKMLKG 161
A+G+C TGG +S T +D++IPVDV++PGCPP+PEA++ A+ KL K +
Sbjct: 158 AMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPPKPEAVID----AITKLRKKISR 213
Query: 162 EV 163
E+
Sbjct: 214 EI 215
>sp|Q56218|NQO6_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 6 (NADH DEHYDROGENASE 1, CHAIN
6) (NDH-1, CHAIN 6) >gi|7443162|pir||T11899 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO6 -
Thermus aquaticus thermophilus
>gi|1279862|gb|AAA97939.1| (U52917) NADH dehydrogenase
I, subunit NQO6 [Thermus thermophilus]
Length = 181
Score = 100 bits (247), Expect = 1e-20
Identities = 51/128 (39%), Positives = 82/128 (63%), Gaps = 6/128 (4%)
Query: 43 CDIEIIAALTPRYDAERFGVKLV-GSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIV 101
C IE++A+ R D RFG ++ SPR AD+++V G ++ + ++ V+EQ P+PK V
Sbjct: 46 CAIEMMASTDARNDLARFGSEVFRASPRQADVMIVAGRLSKKMAPVMRRVWEQMPDPKWV 105
Query: 102 IAIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKMLKG 161
I++G+C + G +F +D V+PVDV+VPGCPPRPEA+++ V+ +L K ++G
Sbjct: 106 ISMGACASSGGMFNNYAIVQN-VDSVVPVDVYVPGCPPRPEALIYAVM----QLQKKVRG 160
Query: 162 EVPPEEGE 169
+ E GE
Sbjct: 161 QAYNERGE 168
>sp|O67334|NUOB_AQUAE NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
B) >gi|7443158|pir||C70413 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain nuoB - Aquifex
aeolicus >gi|2983736|gb|AAC07297.1| (AE000734) NADH
dehydrogenase I chain B [Aquifex aeolicus]
Length = 179
Score = 100 bits (247), Expect = 1e-20
Identities = 45/113 (39%), Positives = 72/113 (62%), Gaps = 1/113 (0%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C IE++ R+D +R GV SPR AD+L+V G V N+ +KL+++Q P+PK I
Sbjct: 36 CAIEMMHTAASRFDLDRLGVIFRASPRQADVLIVAGTVVNKVAPMLKLIWDQMPDPKWCI 95
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKL 155
++G C + G F + T +DR+IPVDV++PGCPP P+ +++G++ K+
Sbjct: 96 SMGGCASAGGPF-PTYSTLQGVDRIIPVDVYIPGCPPTPQGLIYGILQLQRKI 147
>pir||E64677 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO6 -
Helicobacter pylori (strain 26695)
>gi|2314428|gb|AAD08307.1| (AE000631) NADH-ubiquinone
oxidoreductase, NQO6 subunit (NQO6) [Helicobacter pylori
26695]
Length = 159
Score = 100 bits (246), Expect = 1e-20
Identities = 47/124 (37%), Positives = 80/124 (63%), Gaps = 3/124 (2%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C IE++A R+D +RFG SPR +D++++ G +T + E ++ +Y+Q PEPK VI
Sbjct: 33 CAIEMMATGGSRFDFDRFGTIFRASPRQSDVMIIAGTLTKKHAEFMRRLYDQMPEPKWVI 92
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKL--AKMLK 160
++GSC G +F + T DRV+PVD+++PGC PRPE + + +++ +K+ +K +K
Sbjct: 93 SMGSCANTGGMF-NTYATVQGADRVVPVDIYLPGCAPRPETLQYALMVLQDKIRRSKAIK 151
Query: 161 GEVP 164
+ P
Sbjct: 152 QDAP 155
>pir||C71838 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO6 -
Helicobacter pylori (strain J99)
>gi|4155792|gb|AAD06768.1| (AE001545) NADH
oxidoreductase I [Helicobacter pylori J99]
Length = 159
Score = 100 bits (246), Expect = 1e-20
Identities = 47/124 (37%), Positives = 80/124 (63%), Gaps = 3/124 (2%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C IE++A R+D +RFG SPR +D++++ G +T + E ++ +Y+Q PEPK VI
Sbjct: 33 CAIEMMATGGSRFDFDRFGTIFRASPRQSDVMIIAGTLTKKHAEFMRRLYDQMPEPKWVI 92
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKL--AKMLK 160
++GSC G +F + T DRV+PVD+++PGC PRPE + + +++ +K+ +K +K
Sbjct: 93 SMGSCANTGGMF-NTYATVQGADRVVPVDIYLPGCAPRPETLQYALMVLQDKIRRSKAIK 151
Query: 161 GEVP 164
+ P
Sbjct: 152 QDAP 155
>sp|P15602|NUKM_PARTE NADH-UBIQUINONE OXIDOREDUCTASE 20 KDA SUBUNIT >gi|72692|pir||F2PPG
psbG protein - Paramecium tetraurelia mitochondrion
>gi|578753|emb|CAA34045.1| (X15917) psbG protein (AA
1-156) [Paramecium aurelia]
Length = 156
Score = 99.8 bits (245), Expect = 2e-20
Identities = 46/117 (39%), Positives = 72/117 (61%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E++ A RYD +RFGV +PR AD+++V G VTN+ ++ +Y+QT +PK V+
Sbjct: 34 CALEMMHATVSRYDFDRFGVIFRATPRQADLIIVAGTVTNKMAPALRRLYDQTADPKWVL 93
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKML 159
++GSC GG ++ S D++IPVD+ P CPP EA+ GV+ + L K +
Sbjct: 94 SMGSCANGGGYYHYSYAVVKGCDKIIPVDMLCPRCPPTAEALFFGVLQLQKTLMKTI 150
>pir||C75388 NADH dehydrogenase I, B subunit - Deinococcus radiodurans (strain
R1) >gi|6459265|gb|AAF11070.1|AE001994_6 (AE001994) NADH
dehydrogenase I, B subunit [Deinococcus radiodurans]
Length = 181
Score = 99.8 bits (245), Expect = 2e-20
Identities = 49/129 (37%), Positives = 83/129 (63%), Gaps = 6/129 (4%)
Query: 43 CDIEIIAALTPRYDAERFGVKLV-GSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIV 101
C IE++++ R D RFG ++ SPR AD+++V G ++ + ++ VY+Q P+PK V
Sbjct: 46 CAIEMMSSTNARNDMSRFGSEVFRASPRQADVMIVAGRLSKKMAPVMRRVYDQMPDPKWV 105
Query: 102 IAIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKMLKG 161
I++G+C + G +F +D V+PVD+FVPGCPPRPEA+++ V+ +L K ++G
Sbjct: 106 ISMGACASSGGMFNNYAVVQN-VDSVVPVDIFVPGCPPRPEALIYAVM----QLQKKVRG 160
Query: 162 EVPPEEGEE 170
E + G++
Sbjct: 161 EAFDQLGQQ 169
>gi|8928600 NADH dehydrogenase subunit 10 [Paramecium aurelia]
Length = 154
Score = 99.8 bits (245), Expect = 2e-20
Identities = 46/117 (39%), Positives = 72/117 (61%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E++ A RYD +RFGV +PR AD+++V G VTN+ ++ +Y+QT +PK V+
Sbjct: 32 CALEMMHATVSRYDFDRFGVIFRATPRQADLIIVAGTVTNKMAPALRRLYDQTADPKWVL 91
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKML 159
++GSC GG ++ S D++IPVD+ P CPP EA+ GV+ + L K +
Sbjct: 92 SMGSCANGGGYYHYSYAVVKGCDKIIPVDMLCPRCPPTAEALFFGVLQLQKTLMKTI 148
>gb|AAK40969.1| NADH dehydrogenase subunit B (NuoB) [Sulfolobus solfataricus]
Length = 170
Score = 99.5 bits (244), Expect = 2e-20
Identities = 53/130 (40%), Positives = 79/130 (60%), Gaps = 3/130 (2%)
Query: 26 IGRSPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSL 85
I S W H + SC G + AA R+DAER+G+ S R ++IL++ G ++ +
Sbjct: 36 ISFSLWPPHFTT-SCCGTEFGAFAAA--RFDAERYGMLPFSSARQSNILILEGTLSRKMG 92
Query: 86 ERVKLVYEQTPEPKIVIAIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAIL 145
++VY+Q PEPK VIA+G+C G +F+ S T P D IPVD++VPGCP RPEA+
Sbjct: 93 RAARIVYDQMPEPKYVIALGACILEGGIFWNSYNTVLPSDIGIPVDLYVPGCPIRPEAVA 152
Query: 146 HGVVLALEKL 155
V++ +K+
Sbjct: 153 RAVLMLQKKI 162
>gb|AAK41285.1| Formate hydrogenlyase subunit 7 (hycG) [Sulfolobus solfataricus]
Length = 201
Score = 99.5 bits (244), Expect = 2e-20
Identities = 47/122 (38%), Positives = 72/122 (58%), Gaps = 8/122 (6%)
Query: 28 RSPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLER 87
RS +++ ++SG+C GC++E+ +P YD RF + +PRHAD L+V G +T + E
Sbjct: 83 RSFYLYPIDSGTCGGCNMELKLISSPEYDMTRFSIFFTNTPRHADALVVMGVMTEKMKEV 142
Query: 88 VKLVYEQTPEPKIVIAIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHG 147
+K YE PEPK+VI +G+C G + E PL+ V+ +PGCPP P IL
Sbjct: 143 LKKAYEAMPEPKVVILLGACAISGGIIGE----GVPLEAVVE----IPGCPPNPFTILEA 194
Query: 148 VV 149
++
Sbjct: 195 LM 196
>emb|CAB57637.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
Length = 170
Score = 99.5 bits (244), Expect = 2e-20
Identities = 53/130 (40%), Positives = 79/130 (60%), Gaps = 3/130 (2%)
Query: 26 IGRSPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSL 85
I S W H + SC G + AA R+DAER+G+ S R ++IL++ G ++ +
Sbjct: 36 ISFSLWPPHFTT-SCCGTEFGAFAAA--RFDAERYGMLPFSSARQSNILILEGTLSRKMG 92
Query: 86 ERVKLVYEQTPEPKIVIAIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAIL 145
++VY+Q PEPK VIA+G+C G +F+ S T P D IPVD++VPGCP RPEA+
Sbjct: 93 RAARIVYDQMPEPKYVIALGACILEGGIFWNSYNTVLPSDIGIPVDLYVPGCPIRPEAVA 152
Query: 146 HGVVLALEKL 155
V++ +K+
Sbjct: 153 RAVLMLQKKI 162
>emb|CAC12098.1| (AL445066) probable NADH dehydrogenase, chain B [Thermoplasma
acidophilum]
Length = 149
Score = 99.5 bits (244), Expect = 2e-20
Identities = 49/121 (40%), Positives = 75/121 (61%), Gaps = 5/121 (4%)
Query: 43 CDIEIIAALTPRYDAERFGVKLV-GSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIV 101
C IE++A D RFG ++ SPR +D+++V+G VT + RV+ +Y++ P PK V
Sbjct: 30 CAIEMMAIQASDMDISRFGSEIFRNSPRQSDLMIVSGTVTKKMAPRVRRIYDEMPYPKYV 89
Query: 102 IAIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKMLKG 161
IA G C G + + +DRV+PVDV++PGCPP PEA+ +G++L L K ++G
Sbjct: 90 IAQGVCVIQGGPYNQGYSVVLGVDRVVPVDVYIPGCPPTPEALTNGIIL----LQKKIRG 145
Query: 162 E 162
E
Sbjct: 146 E 146
>sp|P31175|NUKC_SOYBN NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT K >gi|282904|pir||S27978
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ndhK
- soybean chloroplast (fragment)
>gi|11304|emb|CAA45612.1| (X64329) ndhK [Glycine max]
Length = 224
Score = 97.9 bits (240), Expect = 6e-20
Identities = 52/122 (42%), Positives = 76/122 (61%), Gaps = 5/122 (4%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C IE + + R+D +R+G+ SPR AD++L G VT + + +YEQ PEPK VI
Sbjct: 41 CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTVGTVTMKMAPSLVRLYEQMPEPKYVI 100
Query: 103 AIGSCP-TGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKMLKG 161
A+G+C TGG +S T +D++IPVDV++PGCP +PEAI+ A+ KL K +
Sbjct: 101 AMGACTITGGMFSTDSYSTVRGVDKLIPVDVYLPGCPTKPEAIID----AITKLRKEISR 156
Query: 162 EV 163
E+
Sbjct: 157 EI 158
>pir||C72621 probable NADH dehydrogenase (ubiquinone) chain 10 APE1428 -
Aeropyrum pernix (strain K1) >gi|5105111|dbj|BAA80425.1|
(AP000061) 202aa long hypothetical NADH dehydrogenase
(ubiquinone) chain 10 [Aeropyrum pernix]
Length = 202
Score = 97.5 bits (239), Expect = 8e-20
Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 4/127 (3%)
Query: 29 SPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERV 88
S W H+ + SC C E A PR D E+FG PR +++++ G VT + V
Sbjct: 45 SLWPVHLTT-SC--CSTEFAATFAPRIDGEQFGALPWVGPRQTNLIIIEGTVTKKMACAV 101
Query: 89 KLVYEQTPEPKIVIAIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGV 148
+L +EQ P PK IA+G+C G +FY S P +V+P+D+++PGCPPRPE + +
Sbjct: 102 RLTWEQMPHPKFAIAMGACALDGGLFYNSYNIVKPW-QVLPIDIYIPGCPPRPEGVARAI 160
Query: 149 VLALEKL 155
V K+
Sbjct: 161 VELQRKI 167
>pir||T34623 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain nuoB -
Streptomyces coelicolor >gi|5042276|emb|CAB44530.1|
(AL078618) nuo, NADH dehydrogenase subunit [Streptomyces
coelicolor]
Length = 184
Score = 96.3 bits (236), Expect = 2e-19
Identities = 47/129 (36%), Positives = 75/129 (57%), Gaps = 2/129 (1%)
Query: 43 CDIEIIAALTPRYDAERFGVKLV-GSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIV 101
C IE++ RYD RFG+++ GSPR AD+++V G V+ + ++ VY+Q P PK V
Sbjct: 38 CAIEMMTTGAGRYDLARFGMEVFRGSPRQADLMIVAGRVSQKMAPVLRQVYDQMPNPKWV 97
Query: 102 IAIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKMLKG 161
I++G C + G +F +D V+PVD+++PGCPPRPE ++ ++ +K+ G
Sbjct: 98 ISMGVCASSGGMFNNYAIVQG-VDHVVPVDIYLPGCPPRPEMLMDAILKLHQKIQSSKLG 156
Query: 162 EVPPEEGEE 170
E E
Sbjct: 157 VNAEEAARE 165
>gb|AAF97798.1|AF281148_2 (AF281148) NADH dehydrogenase I subunit B [Pseudomonas fluorescens]
Length = 224
Score = 94.0 bits (230), Expect = 1e-18
Identities = 52/133 (39%), Positives = 79/133 (59%), Gaps = 5/133 (3%)
Query: 27 GRSPWVFHVNSG-SCNGCDIEIIAALTPRYDAERFGVKLV-GSPRHADILLVTGPVTNQS 84
GR ++ N G SC C +E+ A T +D RFG +++ SPR AD +++ G +
Sbjct: 53 GRKNSLWPYNFGLSC--CYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKM 110
Query: 85 LERVKLVYEQTPEPKIVIAIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAI 144
++ +YEQ EPK VI++GSC G + Y+ +D+ +PVDV+VPGCPPRPEA
Sbjct: 111 APIIQRLYEQMLEPKWVISMGSCANSGGM-YDIYSVVQGVDKFLPVDVYVPGCPPRPEAF 169
Query: 145 LHGVVLALEKLAK 157
L G++L E + +
Sbjct: 170 LQGLMLLQESIGQ 182
>pir||C83316 NADH dehydrogenase I chain B PA2638 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948706|gb|AAG06026.1|AE004692_5 (AE004692) NADH
dehydrogenase I chain B [Pseudomonas aeruginosa]
Length = 225
Score = 93.6 bits (229), Expect = 1e-18
Identities = 51/133 (38%), Positives = 79/133 (59%), Gaps = 5/133 (3%)
Query: 27 GRSPWVFHVNSG-SCNGCDIEIIAALTPRYDAERFGVKLV-GSPRHADILLVTGPVTNQS 84
GR ++ N G SC C +E+ A T +D RFG +++ SPR AD +++ G +
Sbjct: 54 GRKNSLWPYNFGLSC--CYVEMTTAFTAPHDIARFGAEVIRASPRQADFMVIAGTCFIKM 111
Query: 85 LERVKLVYEQTPEPKIVIAIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAI 144
++ +YEQ EPK VI++GSC G + Y+ +D+ +PVDV++PGCPPRPEA
Sbjct: 112 APVIQRLYEQMLEPKWVISMGSCANSGGM-YDIYSVVQGVDKFLPVDVYIPGCPPRPEAF 170
Query: 145 LHGVVLALEKLAK 157
L G++L E + +
Sbjct: 171 LQGLMLLQESIGQ 183
>sp|P33598|NUOB_ECOLI NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
2) (NUO2) >gi|7428919|pir||E65000 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain B - Escherichia coli
>gi|1788624|gb|AAC75347.1| (AE000318) NADH dehydrogenase
I chain B [Escherichia coli K12]
Length = 220
Score = 92.8 bits (227), Expect = 2e-18
Identities = 49/133 (36%), Positives = 80/133 (59%), Gaps = 5/133 (3%)
Query: 27 GRSPWVFHVNSG-SCNGCDIEIIAALTPRYDAERFGVKLV-GSPRHADILLVTGPVTNQS 84
GR ++ N G SC C +E++ + T +D RFG +++ SPR AD+++V G +
Sbjct: 49 GRKNSIWPYNFGLSC--CYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKM 106
Query: 85 LERVKLVYEQTPEPKIVIAIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAI 144
++ +Y+Q EPK VI++G+C G + Y+ +D+ IPVDV++PGCPPRPEA
Sbjct: 107 APVIQRLYDQMLEPKWVISMGACANSGGM-YDIYSVVQGVDKFIPVDVYIPGCPPRPEAY 165
Query: 145 LHGVVLALEKLAK 157
+ ++L E + K
Sbjct: 166 MQALMLLQESIGK 178
>gi|11499417 F420H2:quinone oxidoreductase, 39.7 kDa subunit, putative
[Archaeoglobus fulgidus] >gi|7483897|pir||D69478 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3), 39.7 kDa
subunit homolog - Archaeoglobus fulgidus
>gi|2648716|gb|AAB89421.1| (AE000976) F420H2:quinone
oxidoreductase, 39.7 kDa subunit, putative
[Archaeoglobus fulgidus]
Length = 353
Score = 92.4 bits (226), Expect = 3e-18
Identities = 44/120 (36%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 29 SPWVFHVNSGSCNGCDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERV 88
S W H+ + C E+ A YD ER G G R ++++V G +T + + +
Sbjct: 27 SLWPVHLVTACCGA---ELAHAFACGYDGERIGALNYGIARQTNLIIVEGAITRKMAKVL 83
Query: 89 KLVYEQTPEPKIVIAIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGV 148
++ +EQ P+PK VI +G+C G +F+ P D V+PVD F+PGCPP PEA+L G+
Sbjct: 84 RITWEQMPDPKFVIVMGACGLQGGIFWNGYHMVKPSD-VVPVDFFIPGCPPTPEALLRGI 142
>pir||S37059 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain B - Escherichia
coli >gi|397899|emb|CAA48361.1| (X68301) NADH
dehydrogenase I, subunit nuoB [Escherichia coli]
Length = 220
Score = 92.1 bits (225), Expect = 4e-18
Identities = 49/133 (36%), Positives = 79/133 (58%), Gaps = 5/133 (3%)
Query: 27 GRSPWVFHVNSG-SCNGCDIEIIAALTPRYDAERFGVKLV-GSPRHADILLVTGPVTNQS 84
GR ++ N G SC C +E++ T +D RFG +++ SPR AD+++V G +
Sbjct: 49 GRKNSIWPYNFGLSC--CYVEMVTLFTAVHDVARFGAEVLRASPRQADLMVVAGTCFTKM 106
Query: 85 LERVKLVYEQTPEPKIVIAIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAI 144
++ +Y+Q EPK VI++G+C G + Y+ +D+ IPVDV++PGCPPRPEA
Sbjct: 107 APVIQRLYDQMLEPKWVISMGACANSGGM-YDIYSVVQGVDKFIPVDVYIPGCPPRPEAY 165
Query: 145 LHGVVLALEKLAK 157
+ ++L E + K
Sbjct: 166 MQALMLLQESIGK 178
>sp|O85274|NUOB_ERWCA NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
2) (NUO2) >gi|3273736|gb|AAC38641.1| (AF057063) NADH
dehydrogenase chain B [Pectobacterium carotovorum subsp.
carotovorum]
Length = 224
Score = 91.7 bits (224), Expect = 5e-18
Identities = 49/133 (36%), Positives = 79/133 (58%), Gaps = 5/133 (3%)
Query: 27 GRSPWVFHVNSG-SCNGCDIEIIAALTPRYDAERFGVKLV-GSPRHADILLVTGPVTNQS 84
GR ++ N G SC C +E++ + T +D RFG +++ SPR AD ++V G +
Sbjct: 53 GRQNSLWPYNFGLSC--CYVEMVTSFTAVHDVARFGAEVLRASPRQADFMVVAGTCFTKM 110
Query: 85 LERVKLVYEQTPEPKIVIAIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAI 144
++ +YEQ EPK VI++G+C G + Y+ +D+ +PVDV++PGCPPRPEA
Sbjct: 111 APVIQRLYEQMLEPKWVISMGACANSGGM-YDIYSVVQGVDKFLPVDVYIPGCPPRPEAY 169
Query: 145 LHGVVLALEKLAK 157
+ ++L E + K
Sbjct: 170 MQALLLLKESIGK 182
>sp|Q26783|NUKM_TRYBB NADH-UBIQUINONE OXIDOREDUCTASE 20 KDA SUBUNIT PRECURSOR (COMPLEX
I-20KD) (CI-20KD) >gi|162168|gb|AAA30217.1| (L00585)
NADH dehydrogenase (ubiquinone) [Trypanosoma brucei]
Length = 202
Score = 90.5 bits (221), Expect = 1e-17
Identities = 45/118 (38%), Positives = 70/118 (59%), Gaps = 4/118 (3%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C +E++ A RYD +RFG+ +PR A+I++V+G VTN+ ++ +Y Q PK VI
Sbjct: 78 CAVEMMHAYASRYDLDRFGIVPRPTPRQAEIIIVSGTVTNKMAPILRNIYVQMVNPKWVI 137
Query: 103 AIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAILHGVVLALEKLAKMLK 160
++GSC GG ++ S +R IPVD ++PGCPP E++ V L L K ++
Sbjct: 138 SMGSCANGGGYYHFSYAVLRGCERAIPVDFWIPGCPPSAESL----VFCLHTLQKKIR 191
>sp|P57253|NUOB_BUCAI NADH DEHYDROGENASE I CHAIN B (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
B) >gi|10038838|dbj|BAB12873.1| (AP001118) NADH
dehydrogenase I chain B [Buchnera sp. APS]
Length = 224
Score = 88.5 bits (216), Expect = 4e-17
Identities = 48/131 (36%), Positives = 82/131 (61%), Gaps = 6/131 (4%)
Query: 27 GRSPWVFHVNSG-SCNGCDIEIIAALTPRYDAERFGVKLV-GSPRHADILLVTGPVTNQS 84
GR ++ N G SC C +E+++A T +D RFG +++ SPR AD++++ G +
Sbjct: 53 GRKNSLWPYNFGLSC--CYVEMVSAFTSVHDVARFGSEVLRASPRQADVMVIAGTPFIKM 110
Query: 85 LERVKLVYEQTPEPKIVIAIGSCPTGGSVFYESPFTNAPLDRVIPVDVFVPGCPPRPEAI 144
++ +Y+Q EPK VI++G+C G + Y+ +D+ +PVD+++PGCPPRPEA
Sbjct: 111 APVIQRLYDQMLEPKWVISMGACANSGGM-YDIYSVVQGVDKFLPVDIYIPGCPPRPEAY 169
Query: 145 LHGVVLALEKL 155
+ ++L L+KL
Sbjct: 170 MQALIL-LQKL 179
>dbj|BAA16121.1| (D90860) NADH DEHYDROGENASE I CHAIN B (EC 1.6.5.3) (NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 2) (NUO2). [Escherichia coli]
Length = 151
Score = 78.0 bits (189), Expect = 6e-14
Identities = 37/93 (39%), Positives = 58/93 (61%), Gaps = 1/93 (1%)
Query: 65 VGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVIAIGSCPTGGSVFYESPFTNAPL 124
V SPR AD+++V G + ++ +Y+Q EPK VI++G+C G + Y+ +
Sbjct: 18 VPSPRQADLMVVAGTCFTKMAPVIQRLYDQMLEPKWVISMGACANSGGM-YDIYSVVQGV 76
Query: 125 DRVIPVDVFVPGCPPRPEAILHGVVLALEKLAK 157
D+ IPVDV++PGCPPRPEA + ++L E + K
Sbjct: 77 DKFIPVDVYIPGCPPRPEAYMQALMLLQESIGK 109
>emb|CAB67131.1| (AJ271079) NADH-plastoquinone oxidoreductase subunit K [Oenothera
elata subsp. hookeri]
Length = 247
Score = 77.6 bits (188), Expect = 8e-14
Identities = 43/122 (35%), Positives = 64/122 (52%), Gaps = 5/122 (4%)
Query: 43 CDIEIIAALTPRYDAERFGVKLVGSPRHADILLVTGPVTNQSLERVKLVYEQTPEPKIVI 102
C IE + + R+D +R+G+ SPR AD++L G VT + + +YEQ PEPK VI
Sbjct: 66 CFIEFASLIGSRFDFDRYGLVPRSSPRQADLILTAGTVTMKMAPSLVRLYEQMPEPKYVI 125
Query: 103 AIGSCPTGGSVFYESPFTNAPLDR-VIPVDVFVPGCPPRPEAILHGVVLALEKLAKMLKG 161
A+G+C G +F ++ R CPP+PEAI+ A+ KL K +
Sbjct: 126 AMGACTITGGMFSTDSYSTGSWSRQANSCRCLFASCPPKPEAIID----AITKLRKKISR 181
Query: 162 EV 163
E+
Sbjct: 182 EI 183
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.141 0.426
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69864113
Number of Sequences: 2977
Number of extensions: 3042741
Number of successful extensions: 5915
Number of sequences better than 1.0e-10: 97
Number of HSP's better than 0.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 5796
Number of HSP's gapped (non-prelim): 97
length of query: 170
length of database: 189,106,746
effective HSP length: 51
effective length of query: 119
effective length of database: 158,583,909
effective search space: 18871485171
effective search space used: 18871485171
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 162 (67.5 bits)