BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1891 (PAB1891) DE:hydrogenase related, subunit
         (175 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75115 hydrogenase related PAB1891 - Pyrococcus abyssi (str...   366  e-101
pir||F71017 hypothetical protein PH1435 - Pyrococcus horikoshii ...   331  3e-90
gb|AAK40658.1| NADH dehydrogenase subunit C  (NuoC) [Sulfolobus ...    72  4e-12

>pir||C75115 hydrogenase related PAB1891 - Pyrococcus abyssi (strain Orsay)
           >gi|5458147|emb|CAB49636.1| (AJ248285) hydrogenase
           related, subunit [Pyrococcus abyssi]
           Length = 175
           
 Score =  366 bits (930), Expect = e-101
 Identities = 175/175 (100%), Positives = 175/175 (100%)

Query: 1   MSEGKEDFIVNEINRRFPGVEVQVKENKWGRKRIWVKVPREMFRDFMKFLKELDPDAHYS 60
           MSEGKEDFIVNEINRRFPGVEVQVKENKWGRKRIWVKVPREMFRDFMKFLKELDPDAHYS
Sbjct: 1   MSEGKEDFIVNEINRRFPGVEVQVKENKWGRKRIWVKVPREMFRDFMKFLKELDPDAHYS 60

Query: 61  IGIEEDAGETLDFSIHFLLMYEDAPGVSMIVKTSVPKDNPVLPDISDIFPISLQFEREAM 120
           IGIEEDAGETLDFSIHFLLMYEDAPGVSMIVKTSVPKDNPVLPDISDIFPISLQFEREAM
Sbjct: 61  IGIEEDAGETLDFSIHFLLMYEDAPGVSMIVKTSVPKDNPVLPDISDIFPISLQFEREAM 120

Query: 121 EMVGIDFENAPDKRRLFLPDDFPEGIYPLRHDEKGIPEEMVKNAGHPYLLRRGGK 175
           EMVGIDFENAPDKRRLFLPDDFPEGIYPLRHDEKGIPEEMVKNAGHPYLLRRGGK
Sbjct: 121 EMVGIDFENAPDKRRLFLPDDFPEGIYPLRHDEKGIPEEMVKNAGHPYLLRRGGK 175


>pir||F71017 hypothetical protein PH1435 - Pyrococcus horikoshii
           >gi|3257859|dbj|BAA30542.1| (AP000006) 174aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 174
           
 Score =  331 bits (840), Expect = 3e-90
 Identities = 154/171 (90%), Positives = 165/171 (96%)

Query: 5   KEDFIVNEINRRFPGVEVQVKENKWGRKRIWVKVPREMFRDFMKFLKELDPDAHYSIGIE 64
           KE+ IVNEI++RFP VE+QVKENKWGR+RIW KVPRE  RDFMKFLKELDPDAHYSIGIE
Sbjct: 4   KEEIIVNEISKRFPDVEIQVKENKWGRRRIWAKVPREKLRDFMKFLKELDPDAHYSIGIE 63

Query: 65  EDAGETLDFSIHFLLMYEDAPGVSMIVKTSVPKDNPVLPDISDIFPISLQFEREAMEMVG 124
           EDAGETLDFSIHFLL+Y++APGVSMIVKTS PKD+PVLPDISDIFPISLQFEREAMEMVG
Sbjct: 64  EDAGETLDFSIHFLLLYDEAPGVSMIVKTSAPKDDPVLPDISDIFPISLQFEREAMEMVG 123

Query: 125 IDFENAPDKRRLFLPDDFPEGIYPLRHDEKGIPEEMVKNAGHPYLLRRGGK 175
           IDFENAPDKRRLFLPDDFPEGIYPLRHD+KGIPE+MVKNAGHPYLLRRGGK
Sbjct: 124 IDFENAPDKRRLFLPDDFPEGIYPLRHDDKGIPEDMVKNAGHPYLLRRGGK 174


>gb|AAK40658.1| NADH dehydrogenase subunit C  (NuoC) [Sulfolobus solfataricus]
           Length = 169
           
 Score = 72.2 bits (174), Expect = 4e-12
 Identities = 54/157 (34%), Positives = 84/157 (53%), Gaps = 10/157 (6%)

Query: 1   MSEGKEDFIVNEINRRFPGVEVQVKENKWGRKRIWVKVP-REMFRDFMKFLKELDPDAHY 59
           MSE  +  +VN++  +F   + +++ ++    RI V VP +++ RD   FLK+   D   
Sbjct: 6   MSEALKS-LVNDLQTKFK-CQAKIESDR----RITVIVPDKKIIRDVASFLKDFGFDHVK 59

Query: 60  SI-GIEEDAGETLDFSIHFLLMYE-DAPGVSMIVKTSVPKDNPVLPDISDIFPISLQFER 117
           ++ GI+    E L+   H       D   + + ++T+V   +P LP +  IF  +   ER
Sbjct: 60  AVTGIDYPEHEKLEVVYHISSYSNLDLAKIILALRTTVSYKDPSLPSLYSIFESAWTGER 119

Query: 118 EAMEMVGIDFENAPDKRRLFLPDDFPEGIYPLRHDEK 154
           E  EM+GI FE  PD RR FL +DF EG+YPLR   K
Sbjct: 120 ETYEMLGIRFEGHPDLRRFFLDEDF-EGVYPLRKSYK 155


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.143    0.431 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71475911
Number of Sequences: 2977
Number of extensions: 3030492
Number of successful extensions: 5967
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5964
Number of HSP's gapped (non-prelim): 3
length of query: 175
length of database: 189,106,746
effective HSP length: 50
effective length of query: 125
effective length of database: 159,182,396
effective search space: 19897799500
effective search space used: 19897799500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 162 (67.5 bits)