BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1892 (cooH-like) DE:CO-induced hydrogenase related, subunit
H
(426 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75115 co-induced hydrogenase related, chain H PAB1892 - Py... 871 0.0
pir||H71017 probable NADH-ubiquinone oxidoreductase subunit - Py... 833 0.0
pir||E75060 hydrogenase-4 component g (EC 1.-.-.-) PAB1394 - Pyr... 291 1e-77
emb|CAA76121.1| (Y16191) echE [Methanosarcina barkeri] 287 1e-76
sp|P31895|COOH_RHORU CARBON MONOXIDE-INDUCED HYDROGENASE >gi|112... 245 9e-64
pir||C64364 formate hydrogenlyase, subunit 5 - Methanococcus jan... 224 1e-57
sp|P16431|HYCE_ECOLI FORMATE HYDROGENLYASE SUBUNIT 5 PRECURSOR (... 224 1e-57
dbj|BAA16375.1| (D90877) FORMATE HYDROGENLYASE SUBUNIT 5 PRECURS... 217 2e-55
sp|P77329|HYFG_ECOLI HYDROGENASE-4 COMPONENT G >gi|7432639|pir||... 217 2e-55
pir||B64428 formate hydrogenlyase, subunit 5 - Methanococcus jan... 215 1e-54
pir||F69151 formate hydrogenlyase, subunit 5 - Methanobacterium ... 211 1e-53
gb|AAF65734.1|AF228525_4 (AF228525) F420H2 dehydrogenase subunit... 210 3e-53
emb|CAB52770.1| (AJ243655) hydrogenase large subunit [Methanobac... 206 4e-52
pir||F70349 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 194 2e-48
gb|AAK40659.1| NADH dehydrogenase subunit D (NuoD) [Sulfolobus ... 194 2e-48
sp|P56908|NUD2_RHIME NADH DEHYDROGENASE I CHAIN D 2 (NADH-UBIQUI... 191 1e-47
sp|Q56220|NQO4_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 (NAD... 186 4e-46
emb|CAC12096.1| (AL445066) probable NADH dehydrogenase, chain D ... 183 3e-45
pir||D69032 formate hydrogenlyase, subunit 5 - Methanobacterium ... 183 4e-45
emb|CAB52791.1| (AJ243656) hydrogenase large subunit [Methanobac... 178 8e-44
pir||D70413 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 177 2e-43
pir||E72620 probable NADH dehydrogenase (ubiquinone) chain 7 APE... 171 1e-41
sp|Q9ZDH4|NUOD_RICPR NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINO... 171 2e-41
gb|AAF97800.1|AF281148_4 (AF281148) NADH dehydrogenase I subunit... 169 7e-41
gi|11466444 49 kDa subunit of NADH-plastoquinone [Mesostigma vir... 168 9e-41
sp|Q9RU89|NUOD_DEIRA NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINO... 165 8e-40
pir||D83316 NADH dehydrogenase I chain C,D PA2639 [imported] - P... 164 1e-39
gi|11467261 NADH dehydrogenase 49KDa protein [Zea mays] >gi|1288... 164 2e-39
emb|CAB67226.1| (AJ271079) NADH-plastoquinone oxidoreductase 49 ... 163 4e-39
gi|11466853 NADH dehydrogenase 49kDa protein [Oryza sativa] >gi|... 162 7e-39
sp|P33600|NUOD_ECOLI NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINO... 162 7e-39
sp|Q37720|NUCM_PYLLI NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNI... 162 9e-39
sp|O98691|NUCC_HORVU NADH-PLASTOQUINONE OXIDOREDUCTASE 49 KDA SU... 161 1e-38
emb|CAA48363.1| (X68301) NADH dehydrogenase I, subunit nuoD [Esc... 161 2e-38
gi|11467869 49 kDa subunit of NADH-plastoquinone oxidoreductase ... 161 2e-38
gi|11466310 NADH dehydrogenase subunit 7 [Cafeteria roenbergensi... 161 2e-38
gi|11466758 ORF392 [Marchantia polymorpha] >gi|128834|sp|P12131|... 161 2e-38
pir||D65000 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I, chai... 161 2e-38
dbj|BAA16115.1| (D90859) NADH DEHYDROGENASE I CHAIN D (EC 1.6.5.... 161 2e-38
pir||F72281 hypothetical protein TM1216 - Thermotoga maritima (s... 161 2e-38
gi|11466215 NADH dehydrogenase subunit 7 [Naegleria gruberi] >gi... 161 2e-38
gi|11466021 NADH dehydrogenase 49kD subunit [Nicotiana tabacum] ... 160 3e-38
gi|11497587 NADH dehydrogenase 49kD subunit [Spinacia oleracea] ... 160 3e-38
pir||T34621 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain n... 159 5e-38
gi|11466533 NADH dehydrogenase, subunit 7 [Reclinomonas american... 159 5e-38
sp|P27724|NUCC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE 49 KD SUB... 159 6e-38
sp|P57254|NUCD_BUCAI NADH DEHYDROGENASE I CHAIN C/D (NADH-UBIQUI... 159 6e-38
sp|P95178|NUOD_MYCTU NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINO... 158 1e-37
pir||D81992 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 156 4e-37
gi|7525091 NADH dehydrogenase 49KDa protein [Arabidopsis thalian... 156 5e-37
gi|9695385 NADH dehydrogenase subunit 7 [Phytophthora infestans]... 155 9e-37
pir||B81222 NADH dehydrogenase I, D chain NMB0244 [imported] - N... 155 1e-36
gi|11499418 F420H2:quinone oxidoreductase, 45 kDa subunit (nuoD)... 154 2e-36
pir||E69478 coenzyme F420--quinone oxidoreductase (EC 1.6.5.-) 4... 154 2e-36
gi|11466472 NADH dehydrogenase subunit 7 [Chrysodidymus synuroid... 153 3e-36
sp|Q9PM99|NUOD_CAMJE NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINO... 153 4e-36
gi|11467085 NADH dehydrogenase, subunit 7 [Acanthamoeba castella... 152 8e-36
sp|Q9TC96|NUCM_NEPOL NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUN... 151 1e-35
pir||G64677 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N... 150 2e-35
pir||E71838 nadh oxidoreductase I - Helicobacter pylori (strain ... 150 3e-35
gb|AAF56465.1| (AE003751) CG11913 gene product [Drosophila melan... 150 3e-35
gi|11465869 NADH dehydrogenase subunit 7 [Ochromonas danica] >gi... 149 7e-35
gb|AAG19139.1| (AE005011) NADH dehydrogenase/oxidoreductase; Ndh... 148 9e-35
pir||F82821 NADH-ubiquinone oxidoreductase, NQO4 subunit XF0308 ... 148 1e-34
dbj|BAB18862.1| (AB035479) NADH dehydrogenase [Physcomitrella pa... 148 1e-34
gb|AAF59336.1| (AE003843) CG1970 gene product [Drosophila melano... 148 1e-34
gi|11466595 NADH dehydrogenase subunit 7 [Rhodomonas salina] >gi... 146 3e-34
pir||T34389 hypothetical protein T26A5.3 - Caenorhabditis elegan... 146 4e-34
pir||S38313 NADH dehydrogenase I chain nuoD - Escherichia coli 146 4e-34
sp|Q93873|NUCM_CAEEL PROBABLE NADH-UBIQUINONE OXIDOREDUCTASE 49 ... 146 4e-34
emb|CAB65521.1| (AJ249783) NUCM protein [Yarrowia lipolytica] 146 6e-34
pir||B71019 probable NADH-ubiquinone oxidoreductase subunit - Py... 143 3e-33
sp|P22142|NUCM_NEUCR NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNI... 143 4e-33
gb|AAG23656.1|AF288091_1 (AF288091) NADH dehydrogenase subunit 7... 143 4e-33
pir||T36080 probable NADH dehydrogenase - Streptomyces coelicolo... 143 5e-33
sp|P17694|NUCM_BOVIN NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNI... 142 9e-33
emb|CAA32523.1| (X14338) NADH:ubiquinone oxidoreductase (428 AA)... 142 9e-33
pir||S46437 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 7... 142 9e-33
gi|4758786 NADH dehydrogenase (ubiquinone) Fe-S protein 2 (49kD)... 141 1e-32
sp|O75306|NUCM_HUMAN NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNI... 141 1e-32
pir||C75114 NADH dehydrognease I, chain D (nuod) PAB0495 - Pyroc... 141 1e-32
pir||S57332 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 7... 141 2e-32
sp|O07310|NUOD_RHOCA NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINO... 139 7e-32
gi|11497462 NADH dehydrogenase (ubiquinone), subunit 7 [Protothe... 136 4e-31
gi|7524987 NADH dehydrogenase subunit 7 [Dictyostelium discoideu... 136 5e-31
sp|P29916|NQO4_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 (NAD... 136 6e-31
sp|P56907|NUD1_RHIME NADH DEHYDROGENASE I CHAIN D 1 (NADH-UBIQUI... 135 1e-30
sp|Q36450|NUCM_NICSY NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUN... 131 2e-29
dbj|BAB08104.1| (AB039844) NADH dehydrogenase subunit 7 [Physaru... 127 3e-28
sp|P93306|NUCM_ARATH NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUN... 125 7e-28
gi|9838441 NADH dehydrogenase subunit 7 [Beta vulgaris] >gi|9087... 125 1e-27
pir||G70749 probable hycE protein - Mycobacterium tuberculosis (... 122 1e-26
emb|CAA52952.1| (X75036) NADH dehydrogenase [Triticum aestivum] 121 2e-26
sp|P15689|NUCM_PARTE NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUN... 104 2e-21
gi|8928603 NADH dehydrogenase subunit 7 [Paramecium aurelia] 104 2e-21
pir||A42957 carbon monoxide-induced hydrogenase - Rhodospirillum... 103 5e-21
gb|AAK41286.1| Formate hydrogenlyase subunit 5 (hycE) [Sulfolobu... 101 1e-20
gi|11466264 NADH dehydrogenase subunit 7 [Tetrahymena pyriformis... 91 3e-17
>pir||B75115 co-induced hydrogenase related, chain H PAB1892 - Pyrococcus abyssi
(strain Orsay) >gi|5458146|emb|CAB49635.1| (AJ248285)
CO-induced hydrogenase related, subunit H [Pyrococcus
abyssi]
Length = 426
Score = 871 bits (2225), Expect = 0.0
Identities = 426/426 (100%), Positives = 426/426 (100%)
Query: 1 MSKVEYWVKVPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQL 60
MSKVEYWVKVPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQL
Sbjct: 1 MSKVEYWVKVPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQL 60
Query: 61 MYVAERICGICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGH 120
MYVAERICGICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGH
Sbjct: 61 MYVAERICGICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGH 120
Query: 121 DIGYDTVLHLTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYR 180
DIGYDTVLHLTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYR
Sbjct: 121 DIGYDTVLHLTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYR 180
Query: 181 EIMPQIEDVFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYP 240
EIMPQIEDVFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYP
Sbjct: 181 EIMPQIEDVFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYP 240
Query: 241 DLGIKPIMPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVL 300
DLGIKPIMPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVL
Sbjct: 241 DLGIKPIMPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVL 300
Query: 301 VAKLKLLGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFAIAKGLEGNQ 360
VAKLKLLGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFAIAKGLEGNQ
Sbjct: 301 VAKLKLLGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFAIAKGLEGNQ 360
Query: 361 LADVVVAIASIDPCLSCTDRVAVITGDKKVILTEKDLLKLSIQKTREINPEIRGDPTPAG 420
LADVVVAIASIDPCLSCTDRVAVITGDKKVILTEKDLLKLSIQKTREINPEIRGDPTPAG
Sbjct: 361 LADVVVAIASIDPCLSCTDRVAVITGDKKVILTEKDLLKLSIQKTREINPEIRGDPTPAG 420
Query: 421 VGCVRG 426
VGCVRG
Sbjct: 421 VGCVRG 426
>pir||H71017 probable NADH-ubiquinone oxidoreductase subunit - Pyrococcus
horikoshii >gi|3257861|dbj|BAA30544.1| (AP000006) 427aa
long hypothetical NADH-ubiquinone oxidoreductase subunit
[Pyrococcus horikoshii]
Length = 427
Score = 833 bits (2128), Expect = 0.0
Identities = 395/424 (93%), Positives = 416/424 (97%)
Query: 3 KVEYWVKVPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMY 62
KVEYWVK+PFGPIHPGLEEPEKFILTLDGERIVNVD+KLGYNLRGIQWIAFRRNYVQLMY
Sbjct: 4 KVEYWVKIPFGPIHPGLEEPEKFILTLDGERIVNVDIKLGYNLRGIQWIAFRRNYVQLMY 63
Query: 63 VAERICGICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDI 122
+AERICGICSFSHNHTYVRAVEEMAGIEVPERAEYIR IIGELERIHSHLLNLGV+GHDI
Sbjct: 64 LAERICGICSFSHNHTYVRAVEEMAGIEVPERAEYIRAIIGELERIHSHLLNLGVVGHDI 123
Query: 123 GYDTVLHLTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREI 182
GYDTVLHLTWLAREKVMD LEAITGNRVNYSMMTIGGVRRDIEEKH+RLLLDMIKYYREI
Sbjct: 124 GYDTVLHLTWLAREKVMDALEAITGNRVNYSMMTIGGVRRDIEEKHKRLLLDMIKYYREI 183
Query: 183 MPQIEDVFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDL 242
MPQIEDVFLHDSTIEARLRNCA++P+KLAIEMGAVGPTGRGSG++DDARWSEKLGVYPDL
Sbjct: 184 MPQIEDVFLHDSTIEARLRNCAVVPRKLAIEMGAVGPTGRGSGIKDDARWSEKLGVYPDL 243
Query: 243 GIKPIMPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVA 302
GIKP+MPEDVTGEKARGDVYDR AVRIGEI+QSLELIEHALDQ+P+GKIK FPKDN+LVA
Sbjct: 244 GIKPVMPEDVTGEKARGDVYDRTAVRIGEIYQSLELIEHALDQMPEGKIKAFPKDNILVA 303
Query: 303 KLKLLGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFAIAKGLEGNQLA 362
KLKLLGDGEGIGRYEAPRGEL+HYVKGKKGRDGPVRWKMREPTFPNLF IAKGLEGNQLA
Sbjct: 304 KLKLLGDGEGIGRYEAPRGELIHYVKGKKGRDGPVRWKMREPTFPNLFTIAKGLEGNQLA 363
Query: 363 DVVVAIASIDPCLSCTDRVAVITGDKKVILTEKDLLKLSIQKTREINPEIRGDPTPAGVG 422
DVVVAIASIDPCLSCTDRVAV+ KK+ILTEKDLLKLSIQKTREINPE++GDPTPAGVG
Sbjct: 364 DVVVAIASIDPCLSCTDRVAVVKEGKKIILTEKDLLKLSIQKTREINPEVKGDPTPAGVG 423
Query: 423 CVRG 426
C+RG
Sbjct: 424 CIRG 427
>pir||E75060 hydrogenase-4 component g (EC 1.-.-.-) PAB1394 - Pyrococcus abyssi
(strain Orsay) >gi|5458891|emb|CAB50378.1| (AJ248287)
HYDROGENASE-4 COMPONENT G (EC 1.-.-.-) [Pyrococcus
abyssi]
Length = 588
Score = 291 bits (736), Expect = 1e-77
Identities = 167/407 (41%), Positives = 249/407 (61%), Gaps = 26/407 (6%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRR-NYVQLMYVAERIC 68
VP GP+H G+EEP F L + GE IV+VD + Y+ RGI+ I R Y Q++++AERIC
Sbjct: 199 VPMGPLHMGIEEPAHFKLFVKGEEIVDVDYRGFYSHRGIEKIGEGRLTYNQVLFLAERIC 258
Query: 69 GICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVL 128
GIC + H+ +Y A+E +A +E+P+RA YIR ++ ELERIH+HLL +G+ H +GYDT
Sbjct: 259 GICGYQHSVSYAMAIERLADVEIPDRARYIRTLLLELERIHNHLLWVGIAAHLVGYDTGF 318
Query: 129 HLTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIED 188
W RE VM ++E +TGNR Y M +GGVRRDI + + +L +++ RE + + +
Sbjct: 319 MHAWRIREPVMWLMERLTGNRKQYGMNIVGGVRRDILDYRKEEILRVVREIREEVKRFLE 378
Query: 189 VFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARW---SEKLGVYPDLGIK 245
V L+ +T R I+P K+A E +GPT R SG + DAR ++ Y +L K
Sbjct: 379 VVLNTNTFIKRAEGVGILPYKVAKEFSVLGPTARASGRKIDARLDQATKTATAYNELDWK 438
Query: 246 -PIMPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKL 304
P+ E GDV R VR+ E+++S+ ++E +DQ+P G +V+V
Sbjct: 439 VPVYKE--------GDVLARVLVRMDELFESIWIVEQVIDQMPGG--------DVMVPVG 482
Query: 305 KLLGDGEGIGRYEAPRGELVHYV-KGKKGRDGPVRWKMREPTFPNLFAIAKGLEGNQLAD 363
+L E +G EA RGE+VHYV G+K + RWK+R PT+ NL A+ + L+G +AD
Sbjct: 483 RLPEYEEALGFTEAHRGEVVHYVMTGEKNK--VYRWKVRAPTYNNLPAVPEMLKGYHVAD 540
Query: 364 VVVAIASIDPCLSCTDRVAV--ITGDKKVILTEKDLLKLSIQKTREI 408
+ IASIDPC SCT+RV + + K +LTE + +LSI++++E+
Sbjct: 541 APLIIASIDPCYSCTERVQIVDVRSGKVKVLTESEFNELSIKRSKEM 587
>emb|CAA76121.1| (Y16191) echE [Methanosarcina barkeri]
Length = 358
Score = 287 bits (728), Expect = 1e-76
Identities = 157/371 (42%), Positives = 224/371 (60%), Gaps = 17/371 (4%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
+PFGP HP L EP L +D +V V LGY RG++ +++ Q YV ERICG
Sbjct: 5 IPFGPQHPVLPEPVSLKLEIDDNVVVGVLPSLGYVHRGLETFINTKDFNQTTYVCERICG 64
Query: 70 ICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLH 129
ICS H TY R VE++ E+PERA+YIRVI+GEL R+HSHLL LG+ G++++ +
Sbjct: 65 ICSALHGITYTRTVEKLFDTEIPERAQYIRVIVGELNRLHSHLLWLGLFADGFGFESLFY 124
Query: 130 LTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDV 189
W RE+V+DV E I GNRV +S+ +GGV RD+ ++H +LL M + IE V
Sbjct: 125 ECWKYREEVLDVAERICGNRVIHSISKVGGVTRDLTKEHIDMLLKMCDSLETEIKNIEKV 184
Query: 190 FLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMP 249
F+++ T++ RL A + K++A E+G GPT RGSG D R + +Y DLG K +
Sbjct: 185 FVNNYTVKQRLVGLATLSKQVAYEVGTAGPTLRGSGNAIDVRETPDWDIYKDLGFKTAVE 244
Query: 250 EDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKLKLLGD 309
+D GD Y R VRI E+ SL +I +A+ ++P+G+I+ ++K
Sbjct: 245 KD-------GDCYARTKVRITELLNSLTIIRNAISKMPEGEIE---------VRVKGFPT 288
Query: 310 GEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFAIAKGLEGNQLADVVVAIA 369
GE I R E PRGE+++YVKG G R K+R PTF N+ ++ L G +LADV + +
Sbjct: 289 GEAIMRTEQPRGEVIYYVKG-NGTKKLERLKVRTPTFANIPSLLLMLPGVKLADVPIVVL 347
Query: 370 SIDPCLSCTDR 380
+IDPC+SCT+R
Sbjct: 348 TIDPCVSCTER 358
>sp|P31895|COOH_RHORU CARBON MONOXIDE-INDUCED HYDROGENASE >gi|11254539|pir||T51319
carbon-monoxide dehydrogenase (EC 1.2.99.2) cooH chain
[similarity] - Rhodospirillum rubrum
>gi|1498746|gb|AAC45121.1| (U65510) CooH [Rhodospirillum
rubrum]
Length = 361
Score = 245 bits (618), Expect = 9e-64
Identities = 134/372 (36%), Positives = 210/372 (56%), Gaps = 17/372 (4%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
+P GP+H LEEP F + +DGE++V+VD+ G+ RGI+++A +RN Q + + ER+C
Sbjct: 6 IPVGPLHVALEEPMYFRIEVDGEKVVSVDITAGHVHRGIEYLATKRNIYQNIVLTERVCS 65
Query: 70 ICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLH 129
+CS SH TY A+E + G+ VP RA+Y+RVI E +R+ SH+ N+ +L H +G+D++
Sbjct: 66 LCSNSHPQTYCMALESITGMVVPPRAQYLRVIADETKRVASHMFNVAILAHIVGFDSLFM 125
Query: 130 LTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMI-KYYREIMPQIED 188
ARE + D EA+ GNR++ + M IGGV+ D+++ R + + K + +I
Sbjct: 126 HVMEAREIMQDTKEAVFGNRMDIAAMAIGGVKYDLDKDGRDYFIGQLDKLEPTLRDEIIP 185
Query: 189 VFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIM 248
++ + +I R R ++ ++ G +GP RGSG D R VY L + +
Sbjct: 186 LYQTNPSIVDRTRGIGVLSAADCVDYGLMGPVARGSGHAYDVRKQAPYAVYDRLDFEMAL 245
Query: 249 PEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKLKLLG 308
E GDV+ RA VR E S+ LI L +P G K P + +
Sbjct: 246 GE-------HGDVWSRAMVRWQEALTSIGLIRQCLRDMPDGPTKAGP--------VPPIP 290
Query: 309 DGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFAIAKGLEGNQLADVVVAI 368
GE + + EAPRGEL++Y+K G D P R K R PT+ N A+ + G +++D+ + +
Sbjct: 291 AGEAVAKTEAPRGELIYYLK-TNGTDRPERLKWRVPTYMNWDALNVMMAGARISDIPLIV 349
Query: 369 ASIDPCLSCTDR 380
SIDPC+SCT+R
Sbjct: 350 NSIDPCISCTER 361
>pir||C64364 formate hydrogenlyase, subunit 5 - Methanococcus jannaschii
>gi|1591218|gb|AAB98504.1| (U67501) carbon monoxide
dehydrogenase, hydrogenase subunit CooH (cooH)
[Methanococcus jannaschii]
Length = 380
Score = 224 bits (566), Expect = 1e-57
Identities = 145/392 (36%), Positives = 216/392 (54%), Gaps = 26/392 (6%)
Query: 5 EYWVKVPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVA 64
E +P GPIHP L+EP + L LDGE+ V+ ++++GY RGI+ I ++ + +++A
Sbjct: 3 ENMATIPIGPIHPVLKEPLRIKLVLDGEKPVDAEIEMGYVHRGIEKIMEGKHCHKGIHLA 62
Query: 65 ERICGICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGY 124
ER+CGICS+ H T+ +E ++ IE+P++A+Y+RV+ ELERIHSHL+ V I +
Sbjct: 63 ERVCGICSYVHTMTFAECIEHISKIEIPDKAKYLRVVTCELERIHSHLIASAVYNLSIEH 122
Query: 125 DTVLHLTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMP 184
+T+ RE +MD++E ITGNRVN IGGVRRDI + + + + + +
Sbjct: 123 ETLAMWLLNVREIIMDLMEMITGNRVNMGYNVIGGVRRDINREMMDEIYKKLDIFEDELK 182
Query: 185 QIEDVFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGI 244
I +VF I R + I+P + AVGP RGSG+ ++ W + Y +L
Sbjct: 183 NIIEVFETGPLIALRSKEIGILPYHEVMRTRAVGPICRGSGL-PESDWRLRHSTYQELKF 241
Query: 245 KPIMPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPK--GKIKTFPKDNVLVA 302
KP+ E+ GD + R VR EI +S+ LI AL+ + G I+
Sbjct: 242 KPVWREE-------GDNFARMMVRHEEIIESVRLIREALEHYEECSGDIR---------V 285
Query: 303 KLKLLGDGEGIGRYEAPRGELVHYVKGKKGRDGPV--RWKMREPTFPNLFAIAKGLEG-N 359
K ++ G G+G R EAPRGE+ + + + DG + R +R PT NL A L+
Sbjct: 286 KAEIKG-GKGEWRNEAPRGEVTYRM---EITDGGIIKRIMIRTPTVMNLEAYKYMLKTCP 341
Query: 360 QLADVVVAIASIDPCLSCTDRVAVITGDKKVI 391
+AD V A SIDPC+SCT+R V D K I
Sbjct: 342 TVADAVSAYTSIDPCVSCTERCIVAVKDGKEI 373
>sp|P16431|HYCE_ECOLI FORMATE HYDROGENLYASE SUBUNIT 5 PRECURSOR (FHL SUBUNIT 5)
(HYDROGENASE-3 COMPONENT E) >gi|78775|pir||S08623
hydrogenase (EC 1.18.99.1) 3 chain 5 precursor -
Escherichia coli >gi|41684|emb|CAA35550.1| (X17506) hycE
[Escherichia coli] >gi|882614|gb|AAA69231.1| (U29579)
formate hydrogenlyase subunit 5 [Escherichia coli]
>gi|1789076|gb|AAC75763.1| (AE000356) large subunit of
hydrogenase 3 (part of FHL complex) [Escherichia coli
K12] >gi|1093498|prf||2104213E hycE gene [Escherichia
coli]
Length = 569
Score = 224 bits (566), Expect = 1e-57
Identities = 137/399 (34%), Positives = 218/399 (54%), Gaps = 21/399 (5%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIA-FRRNYVQLMYVAERIC 68
VP GP+H +EP F L +DGE I++ D +L Y RG++ +A R Y ++ ++++R+C
Sbjct: 182 VPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 241
Query: 69 GICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVL 128
GIC F+H+ Y +VE GI+VPERA+ IR I+ E+ER+HSHLLNLG+ H G+D+
Sbjct: 242 GICGFAHSTAYTTSVENAMGIQVPERAQMIRAILLEVERLHSHLLNLGLACHFTGFDSGF 301
Query: 129 HLTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIED 188
+ RE M + E +TG R Y + IGG+RRD+ + + + R + ++ D
Sbjct: 302 MQFFRVRETSMKMAEILTGARKTYGLNLIGGIRRDLLKDDMIQTRQLAQQMRREVQELVD 361
Query: 189 VFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIM 248
V L +E R + ++A + VGP R SG D R +P +G ++
Sbjct: 362 VLLSTPNMEQRTVGIGRLDPEIARDFSNVGPMVRASGHARDTR-----ADHPFVGY-GLL 415
Query: 249 PEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKLKLLG 308
P +V E+ DV R VRI E++ +L +I++ LD +P G + +V +
Sbjct: 416 PMEVHSEQG-CDVISRLKVRINEVYTALNMIDYGLDNLPGGPL--------MVEGFTYIP 466
Query: 309 DGEGIGRYEAPRGELVHY-VKGKKGRDGPVRWKMREPTFPNLFAIAKGLEGNQLADVVVA 367
+G EAPRG+ +H+ + G + RW+ R T+ N + L GN ++D +
Sbjct: 467 HRFALGFAEAPRGDDIHWSMTGDNQK--LYRWRCRAATYANWPTLRYMLRGNTVSDAPLI 524
Query: 368 IASIDPCLSCTDRVAVITGDKK--VILTEKDLLKLSIQK 404
I S+DPC SCTDR+ V+ KK ++ K+L + SI++
Sbjct: 525 IGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIER 563
>dbj|BAA16375.1| (D90877) FORMATE HYDROGENLYASE SUBUNIT 5 PRECURSOR (FHL SUBUNIT 5)
(HYDROGENASE 3, SUBUNIT 5). [Escherichia coli]
Length = 570
Score = 217 bits (548), Expect = 2e-55
Identities = 137/401 (34%), Positives = 212/401 (52%), Gaps = 37/401 (9%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIA-FRRNYVQLMYVAERIC 68
+P GP+H +EP F L +DGE+IV+ D +L Y RG++ +A R Y ++ ++++R+C
Sbjct: 199 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 258
Query: 69 GICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVL 128
GIC F+H+ Y +VE GIEVP+RA IR I+ E+ER+HSHLLNLG+ H +G+DT
Sbjct: 259 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 318
Query: 129 HLTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIED 188
+ REK M + E + G+R Y + IGGVRRDI ++ R L +++ R + ++ +
Sbjct: 319 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 378
Query: 189 VFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIM 248
+ L +E R + I+ +++A ++ P Y D G P
Sbjct: 379 MLLATPNMEQRTQGIGILDRQIARDLRFDHP-------------------YADYGNIPKT 419
Query: 249 PEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKLKLLG 308
TG GDV+ R VR+ E + SL ++E ALD +P + L
Sbjct: 420 LFTFTG----GDVFSRVMVRVKETFDSLAMLEFALDNMPDTPL--------LTEGFSYKP 467
Query: 309 DGEGIGRYEAPRGELVHY-VKGKKGRDGPVRWKMREPTFPNLFAIAKGLEGNQLADVVVA 367
+G EAPRGE VH+ + G + RW+ R T+ N + L GN ++D +
Sbjct: 468 HAFALGFVEAPRGEDVHWSMLGDNQK--LFRWRCRAATYANWPVLRYMLRGNTVSDAPLI 525
Query: 368 IASIDPCLSCTDRVAVITGDKKVILT--EKDLLKLSIQKTR 406
I S+DPC SCTDRV ++ K+ T K++ + I + R
Sbjct: 526 IGSLDPCYSCTDRVTLVDVRKRQSKTVPYKEIERYGIDRNR 566
>sp|P77329|HYFG_ECOLI HYDROGENASE-4 COMPONENT G >gi|7432639|pir||F65024 hypothetical
protein b2487 - Escherichia coli (strain K-12)
>gi|1616956|gb|AAB88569.1| (M63654) HyfG [Escherichia
coli] >gi|1788832|gb|AAC75540.1| (AE000335) hydrogenase
4 subunit [Escherichia coli K12]
Length = 555
Score = 217 bits (548), Expect = 2e-55
Identities = 137/401 (34%), Positives = 212/401 (52%), Gaps = 37/401 (9%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIA-FRRNYVQLMYVAERIC 68
+P GP+H +EP F L +DGE+IV+ D +L Y RG++ +A R Y ++ ++++R+C
Sbjct: 184 IPVGPLHITSDEPGHFRLFVDGEQIVDADYRLFYVHRGMEKLAETRMGYNEVTFLSDRVC 243
Query: 69 GICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVL 128
GIC F+H+ Y +VE GIEVP+RA IR I+ E+ER+HSHLLNLG+ H +G+DT
Sbjct: 244 GICGFAHSVAYTNSVENALGIEVPQRAHTIRSILLEVERLHSHLLNLGLSCHFVGFDTGF 303
Query: 129 HLTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIED 188
+ REK M + E + G+R Y + IGGVRRDI ++ R L +++ R + ++ +
Sbjct: 304 MQFFRVREKSMTMAELLIGSRKTYGLNLIGGVRRDILKEQRLQTLKLVREMRADVSELVE 363
Query: 189 VFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIM 248
+ L +E R + I+ +++A ++ P Y D G P
Sbjct: 364 MLLATPNMEQRTQGIGILDRQIARDLRFDHP-------------------YADYGNIPKT 404
Query: 249 PEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKLKLLG 308
TG GDV+ R VR+ E + SL ++E ALD +P + L
Sbjct: 405 LFTFTG----GDVFSRVMVRVKETFDSLAMLEFALDNMPDTPL--------LTEGFSYKP 452
Query: 309 DGEGIGRYEAPRGELVHY-VKGKKGRDGPVRWKMREPTFPNLFAIAKGLEGNQLADVVVA 367
+G EAPRGE VH+ + G + RW+ R T+ N + L GN ++D +
Sbjct: 453 HAFALGFVEAPRGEDVHWSMLGDNQK--LFRWRCRAATYANWPVLRYMLRGNTVSDAPLI 510
Query: 368 IASIDPCLSCTDRVAVITGDKKVILT--EKDLLKLSIQKTR 406
I S+DPC SCTDRV ++ K+ T K++ + I + R
Sbjct: 511 IGSLDPCYSCTDRVTLVDVRKRQSKTVPYKEIERYGIDRNR 551
>pir||B64428 formate hydrogenlyase, subunit 5 - Methanococcus jannaschii
>gi|1499869|gb|AAB99031.1| (U67545) formate
hydrogenlyase, subunit 5 [Methanococcus jannaschii]
Length = 377
Score = 215 bits (541), Expect = 1e-54
Identities = 132/388 (34%), Positives = 213/388 (54%), Gaps = 18/388 (4%)
Query: 4 VEYWVKVPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYV 63
++Y ++ GP+HP + EP + L ++ E I ++ +G N RGI+ I ++ +
Sbjct: 4 MKYEGEIAIGPVHPTMLEPHRLRLFIEDEIIKEAELVIGVNYRGIELIMEGLPPEKISIL 63
Query: 64 AERICGICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIG 123
+E+ICGICS H V E IEVPERAEYIR I+ ELER+HSH+L G +G
Sbjct: 64 SEKICGICSHIHVWCNVTVTERGCDIEVPERAEYIRAIVEELERLHSHMLLFGHAFEVLG 123
Query: 124 YDTVLHLTWLAREKVMDVLEAITGNRVNYSMMTIGGVRR--DIEEKHRRLLLDMIKYYRE 181
++T+ ++ RE +M +L ITG R YS IGG+R +I+E LL+ ++ + E
Sbjct: 124 FETMAFRAFMIREPIMQILGEITGGRAQYSCPIIGGIRPRCNIKESKIPALLERLEKFEE 183
Query: 182 IMPQIEDVFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPD 241
+ ++ + ++D I +R+++ ++ KK A ++ A+GPT RGSG+ D R ++ VY +
Sbjct: 184 NLKKLLERTVNDPMIMSRIKDVGVLDKKTAKKLHALGPTARGSGIHSDMRKMGQVPVYDN 243
Query: 242 LGIKPIMPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLV 301
+ I+ +D GDV+ R AVR E ++S+++I L +P D +
Sbjct: 244 FEFEEIVFDD-------GDVFSRLAVRFYECFESVKIIRQGLKDLPN-------LDKRIY 289
Query: 302 AKLKLLGDGEGIGRY-EAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFAIAKGLEGNQ 360
L + + I Y EA RG+ V+Y G + K+R PT NL + L G+
Sbjct: 290 NPNYELKEFKPIDVYNEAQRGQ-VYYSYGLDENGRVRQVKIRTPTATNLACMEAILPGHH 348
Query: 361 LADVVVAIASIDPCLSCTDRVAVITGDK 388
++D + IAS DPC +CTDR+ V+ +K
Sbjct: 349 VSDAELIIASCDPCFTCTDRMIVVKENK 376
>pir||F69151 formate hydrogenlyase, subunit 5 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621460|gb|AAB84904.1| (AE000824) formate
hydrogenlyase, subunit 5 [Methanobacterium
thermoautotrophicum]
Length = 370
Score = 211 bits (532), Expect = 1e-53
Identities = 127/389 (32%), Positives = 209/389 (53%), Gaps = 27/389 (6%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
+P GP+HPG +EP + + GE+++ +++ GY RGI+ + + + + +Y++ER+CG
Sbjct: 3 LPLGPMHPGYKEPIRLKVKTRGEKVLKAEIEYGYVHRGIERVMRNKTWQKAIYLSERVCG 62
Query: 70 ICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLH 129
ICS+ H T+ A E ++ +E P RA+++R + EL+RI SHL+ + ++T+
Sbjct: 63 ICSYIHTQTFAEAFEAISEVEAPPRAQFLRALTNELDRIQSHLIANSTYFKALDHETMFM 122
Query: 130 LTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDV 189
RE VMD +E +TGNRVN +GGVR D E H ++ ++I + ++
Sbjct: 123 YMLALREPVMDAIELLTGNRVNMGWNVVGGVRMDASESHLSMIREIIVDLEREFDRYVEM 182
Query: 190 FLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPD-LGIKPIM 248
F H I R R + ++ A + AVGP GR SG+R D R E Y D L + I
Sbjct: 183 FEHGPLIGLRSREVGYMSQEEAEKARAVGPIGRASGIRYDFR--EDHPTYRDHLDFRTIW 240
Query: 249 PEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKLKLLG 308
+D GD + R R EI S++LI+ +D +P G ++T K +V
Sbjct: 241 RDD-------GDNFARVMNRFDEIRVSIDLIKQVIDDMPGGPVRT--KVDVKA------- 284
Query: 309 DGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFAIAKGL--EGNQLADVVV 366
G G R EAPRGE+ + ++ + +R P+ N+ A AK + + +AD V
Sbjct: 285 -GYGEWRNEAPRGEVAYMIETNGNLIKNI--SIRTPSIMNIDACAKYMLRDVATVADAVA 341
Query: 367 AIASIDPCLSCTDRVAVI---TGDKKVIL 392
AS DPC++C +RV V+ +G+++++L
Sbjct: 342 TYASADPCIACAERVMVVDEESGEREILL 370
>gb|AAF65734.1|AF228525_4 (AF228525) F420H2 dehydrogenase subunit FpoD [Methanosarcina mazei]
Length = 374
Score = 210 bits (529), Expect = 3e-53
Identities = 132/373 (35%), Positives = 200/373 (53%), Gaps = 12/373 (3%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
V GP HP P + L L GE I++ +V++GY +GI+ I R Y+Q + + +RIC
Sbjct: 12 VHLGPQHPMQPGPFRLNLKLKGETIMDAEVEMGYIHKGIEKILENRTYLQGITIVDRICY 71
Query: 70 ICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLH 129
+ + ++ YV VE++ IE PERA+YIRVI+ EL R+ SHLL LG G IG+ ++
Sbjct: 72 LVALTNEECYVGCVEKLLDIEPPERAQYIRVILEELSRLQSHLLGLGEYGEFIGFVSMFM 131
Query: 130 LTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDV 189
T RE ++ +++ +TG RV +S + GGVR D+ E + + ++ ++++ E++
Sbjct: 132 YTIKEREDILTLIDMVTGARVTHSYLRFGGVRDDLPEGFKEKTIPVLNKLKKVIRDYEEM 191
Query: 190 FLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMP 249
F D+ R ++ A +G GP R +GV D R +E VY DL K
Sbjct: 192 FYSDTIYRERTIGIGVLTADEAKSLGVSGPVLRATGVPFDIRKNEPYLVYRDLDFK---- 247
Query: 250 EDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKLKLL-- 307
V E A GD + R VR+ E+ +S+ +IE LD IP G I FP+ + ++
Sbjct: 248 --VCTETA-GDCFARVQVRLNEMRESIYIIEQCLDMIPNGPI--FPEGTPYGKRTPVMRV 302
Query: 308 GDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFAIAKGLEGNQLADVVVA 367
GE R E PRGE+ Y+ G D P R K+R P +P L A+ + G +AD+V
Sbjct: 303 PAGEVFHRVEDPRGEMGMYMV-SDGSDRPYRVKVRGPYYPTLQALPPLIIGTTVADMVSI 361
Query: 368 IASIDPCLSCTDR 380
S+D C S DR
Sbjct: 362 SGSMDGCTSEVDR 374
>emb|CAB52770.1| (AJ243655) hydrogenase large subunit [Methanobacterium
thermoautotrophicum]
Length = 370
Score = 206 bits (519), Expect = 4e-52
Identities = 126/389 (32%), Positives = 206/389 (52%), Gaps = 27/389 (6%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
+P GP+HPG +EP + + GE+++ +++ GY RGI+ + + + + +Y++ER+CG
Sbjct: 3 LPLGPMHPGYKEPIRLKVKTRGEKVLKAEIEYGYVHRGIERVMRNKTWQKAIYLSERVCG 62
Query: 70 ICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLH 129
ICS+ H T+ A E ++ +E P RA+++R + EL+RI SHL+ + ++T+
Sbjct: 63 ICSYIHTQTFAEAFEAISEVEAPPRAQFLRALTNELDRIQSHLIANSTYFKALDHETMFM 122
Query: 130 LTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDV 189
RE VMD +E +TGNRVN +GGVR D E H + ++I + ++
Sbjct: 123 YMLALREPVMDAIELLTGNRVNMGWNVVGGVRMDASEDHLSRIREIIVDLEREFDRYVEM 182
Query: 190 FLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPD-LGIKPIM 248
F H I R R+ + ++ A + AVGP GR SG+R D R E Y D L + I
Sbjct: 183 FEHGPLIGLRSRDVGYMSREEAEKARAVGPIGRASGIRYDFR--EDHPTYRDHLDFRTIW 240
Query: 249 PEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKLKLLG 308
++ GD + R R EI S++LI+ +D IP G ++ K +V
Sbjct: 241 RDE-------GDNFARVMNRFDEIRVSIDLIKQVIDSIPSGPVRR--KVDVKA------- 284
Query: 309 DGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFAIAKGL--EGNQLADVVV 366
G G R EAPRGE+ + ++ + +R P+ N+ A AK + + +AD V
Sbjct: 285 -GYGEWRNEAPRGEVAYMIETNGNLIKNI--SIRTPSIMNIDACAKYMLRDVATVADAVA 341
Query: 367 AIASIDPCLSCTDRVAVI---TGDKKVIL 392
AS DPC++C +RV V+ G ++++L
Sbjct: 342 TYASADPCIACAERVVVLDENEGKREILL 370
>pir||F70349 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoD1
[similarity] - Aquifex aeolicus
>gi|2983187|gb|AAC06787.1| (AE000695) NADH dehydrogenase
I chain D [Aquifex aeolicus]
Length = 593
Score = 194 bits (488), Expect = 2e-48
Identities = 136/380 (35%), Positives = 195/380 (50%), Gaps = 20/380 (5%)
Query: 12 FGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGIC 71
+GP+HPG F+ L+GERIV DV LG RG++ +A Y Q + +R+ +
Sbjct: 223 WGPLHPGTHGTMWFLFDLEGERIVQTDVILGQLHRGVEKLAEHEMYNQFLVYTDRMDYLS 282
Query: 72 SFSHNHTYVRAVEEMAGI--EVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLH 129
+ N +V A+E + GI +VP +A+YIR ++ EL+RI+SHLL LG D+G T+
Sbjct: 283 ALCSNQAWVVAIERLMGIHDKVPPKAKYIRTMMSELQRINSHLLWLGTYALDLGALTIFL 342
Query: 130 LTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDV 189
+ REK+MD++E ITG R+ S IGGVR D+ E ++ IK + E + E +
Sbjct: 343 YAFKEREKIMDIIEGITGARLTISYPRIGGVRMDLPEGALEVIKAFIKKFPEELKDWETI 402
Query: 190 FLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMP 249
+ R + II K+ A G GP RGSG+ D R E Y ++ +
Sbjct: 403 LTRNRIWLRRNKEVGIISKEDAYFHGVTGPVIRGSGIPYDIRKFEPYDAYDEVEFDIPVG 462
Query: 250 EDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPK-GKIKTFPKDNVLVAKLKLLG 308
E GD YDR VRI E+ QS+ +IE + ++ K K + F + KLKL
Sbjct: 463 E-------IGDCYDRYLVRIEEMKQSIRIIEQCVAKLEKMSKNEPFFYEGE-GKKLKLSL 514
Query: 309 DGEGI--------GRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFAIAKGLEGNQ 360
DG G+ E PRGEL YV G P R K+R P++ NL ++
Sbjct: 515 DGIGVKAPVGEIYSSGENPRGELGFYVV-STGGTSPYRVKIRPPSYYNLCIYPHLMKDRY 573
Query: 361 LADVVVAIASIDPCLSCTDR 380
+AD V +ASIDP + TDR
Sbjct: 574 VADAVTILASIDPVVGETDR 593
>gb|AAK40659.1| NADH dehydrogenase subunit D (NuoD) [Sulfolobus solfataricus]
Length = 410
Score = 194 bits (487), Expect = 2e-48
Identities = 130/380 (34%), Positives = 201/380 (52%), Gaps = 30/380 (7%)
Query: 13 GPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGICS 72
GP HPG F+ L+G+ I +VD+ +GY R ++ ++ RNY+ L+ + ER + S
Sbjct: 33 GPQHPGSGHMRIFV-KLNGDIIEDVDLDVGYVHRAVEKLSENRNYMHLIPLVERPAILDS 91
Query: 73 FSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLTW 132
N Y+ AVE++ G++VPERA+Y+R E+ RI SHL LG+L +G+ T +
Sbjct: 92 IHMNLGYIIAVEKILGVDVPERAQYLRSFAAEVNRIASHLYGLGILAIFLGHSTGFMWGF 151
Query: 133 LAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDVFLH 192
RE + +LEA+TG RV S + GGVR+DI ++ + + + I Y R+ + + +F +
Sbjct: 152 GDREVWVTILEALTGARVTNSYVIPGGVRKDITQEIKEMTIKAIAYQRKRLEDWKKIFFY 211
Query: 193 DSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIK-PIMPED 251
+ +I ARL N ++ ++ AI+ GAVGP R SGV D R E G Y L + P+ E
Sbjct: 212 NPSIRARLENVGVMSRENAIKWGAVGPNLRASGVYYDVRKIEPYGAYDKLDFEIPVYKE- 270
Query: 252 VTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKI------KTFPKDNV-----L 300
GD R VR+ EI QS+ ++E + IP+G I K P +
Sbjct: 271 -------GDGLARGLVRLEEIEQSMRILEQIIKNIPEGNILSDRFFKQIPPIRLKKYWET 323
Query: 301 VAKLKLLG--------DGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFAI 352
++ L G GE I R EA RGEL +YV G P R +M P++ ++
Sbjct: 324 YRRIVLPGYYASFRPPKGEAISRVEAGRGELAYYVV-SDGSPKPYRLRMITPSYRLIYVF 382
Query: 353 AKGLEGNQLADVVVAIASID 372
+ +G++ AD+V S+D
Sbjct: 383 KELCKGSRYADLVSIYGSLD 402
>sp|P56908|NUD2_RHIME NADH DEHYDROGENASE I CHAIN D 2 (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN D 2) >gi|5650747|emb|CAB51632.1| (AJ245399)
putative NADH-ubiquinone oxidoreductase subunit
[Sinorhizobium meliloti]
Length = 404
Score = 191 bits (481), Expect = 1e-47
Identities = 133/397 (33%), Positives = 195/397 (48%), Gaps = 36/397 (9%)
Query: 8 VKVPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERI 67
V + GP HP + +L LDGE + VD +GY RG + +A Y Q+ + +R+
Sbjct: 20 VLLNLGPQHPSTHGVLRLVLQLDGEYVERVDPHIGYLHRGTEKLAESFTYTQIFPLTDRL 79
Query: 68 CGICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTV 127
+C S+N + AVE++ GIE P RA+YIRV++ EL RI HLL G L D+G T
Sbjct: 80 DYLCPPSNNLAFALAVEKLLGIEAPIRAQYIRVMMAELARISGHLLITGALPMDLGAMTA 139
Query: 128 LHLTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMP--- 184
L RE +MD+LE ITG R++ S +GGVR D+ + L I+ + EI P
Sbjct: 140 LLYAMREREMIMDLLEMITGARMHTSYCRVGGVREDLPDG----FLPKIREFCEIFPNRI 195
Query: 185 -QIEDVFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLG 243
E + ++ +R + +I AI++G GP R SGV D R E +Y L
Sbjct: 196 RDYERLIENNRVFLSRTQGVGVISATDAIDLGLSGPNLRASGVDWDIRRDEPYEIYDRLD 255
Query: 244 IKPIMPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIK------TFPKD 297
I E+ GD Y R R+ E+ +S+ LIE ++Q+P+G + FP D
Sbjct: 256 FDVITREE-------GDCYSRWLCRVDEMRESIRLIEQCMEQMPEGAFQVDIPTIAFPVD 308
Query: 298 --------NVLVAKLKL------LGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMRE 343
L+ L + GE EAP+GEL Y+ G P R K+R
Sbjct: 309 KERVHCSMEALIQHFDLSAYGFDVPAGEVYSVIEAPKGELGFYII-SDGSPKPFRMKVRA 367
Query: 344 PTFPNLFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
P+F NL A+ LAD++ + S+DP ++ D+
Sbjct: 368 PSFVNLQALFGVTNARYLADMIAVLGSLDPVMAEVDK 404
>sp|Q56220|NQO4_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 (NADH DEHYDROGENASE 1, CHAIN
4) (NDH-1, CHAIN 4) >gi|7432634|pir||T11901 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO4 -
Thermus aquaticus thermophilus
>gi|1279864|gb|AAA97941.1| (U52917) NADH dehydrogenase
I, subunit NQO4 [Thermus thermophilus]
Length = 409
Score = 186 bits (468), Expect = 4e-46
Identities = 125/387 (32%), Positives = 199/387 (51%), Gaps = 27/387 (6%)
Query: 13 GPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGICS 72
GP HP + ++TL GE ++ V +GY G + R Y+Q + R+ + S
Sbjct: 31 GPQHPSTHGVLRLMVTLSGEEVLEVVPHIGYLHTGFEKTMEHRTYLQNITYTPRMDYLHS 90
Query: 73 FSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLTW 132
F+H+ Y AVE++ G VP RAE IRVI+ EL R+ SHL+ LG D+G T +
Sbjct: 91 FAHDLAYALAVEKLLGAVVPPRAETIRVILNELSRLASHLVFLGTGLLDLGALTPFFYAF 150
Query: 133 LAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDVFLH 192
RE ++D+ E +TG R +++ + IGGV+ D+ E+ L +++ + + E +F
Sbjct: 151 RERETILDLFEWVTGQRFHHNYIRIGGVKEDLPEEFVPELKKLLEVLPHRIDEYEALFAE 210
Query: 193 DSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMPEDV 252
R R +IP ++AI++G G + R SGV D R YP G + +
Sbjct: 211 SPIFYERARGVGVIPPEVAIDLGLTGGSLRASGVNYDVR-----KAYPYSGYETYTFDVP 265
Query: 253 TGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIK------TFPKDNVLVAKLKL 306
GE RGDV+DR VRI E+ +S+++I+ AL+++ G ++ T P ++L ++
Sbjct: 266 LGE--RGDVFDRMLVRIREMRESVKIIKQALERLEPGPVRDPNPQITPPPRHLLETSMEA 323
Query: 307 L-------------GDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFAIA 353
+ GE E+ RGEL +Y+ G P R K+R P+F NL ++
Sbjct: 324 VIYHFKHYTEGFHPPKGEVYVPTESARGELGYYIV-SDGGSMPYRVKVRAPSFVNLQSLP 382
Query: 354 KGLEGNQLADVVVAIASIDPCLSCTDR 380
+G Q+ D+V IAS+DP + DR
Sbjct: 383 YACKGEQVPDMVAIIASLDPVMGDVDR 409
>emb|CAC12096.1| (AL445066) probable NADH dehydrogenase, chain D [Thermoplasma
acidophilum]
Length = 369
Score = 183 bits (460), Expect = 3e-45
Identities = 116/375 (30%), Positives = 194/375 (50%), Gaps = 12/375 (3%)
Query: 7 WVKVPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAER 66
W +V FGP HP + + + LDGE + V+ +GY R + I + Y M +R
Sbjct: 6 WTEVNFGPQHPSMHGVLRLRVKLDGEIVKEVEPIIGYLHRNAEKIGELQFYCDNMIYFDR 65
Query: 67 ICGICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDT 126
+ + + + Y+ A E++ IEVPERA++IRV++ EL RI SHL+ LG G D+G T
Sbjct: 66 MDYVAAMNMEVGYLEAAEKLLDIEVPERAQWIRVMMAELNRIASHLVWLGAFGLDLGMLT 125
Query: 127 VLHLTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQI 186
+ REK++ + ++G+R + M+IGGV +D+ ++ + I+ + + + +I
Sbjct: 126 PFFYCFKEREKILKIFTEVSGSRQQLNYMSIGGVYQDVTDEALDHIKTFIREFPKELNKI 185
Query: 187 EDVFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIK- 245
E +F+ + +R + I+ K++AI+ G GP R SGV D R ++ VY +
Sbjct: 186 ESLFVKNDVFISRTKGIGILSKEMAIDYGVTGPMLRASGVEYDVRKAQPYLVYDKVNFDI 245
Query: 246 PIMPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKLK 305
P+ +GD R VR+ E+ QS++++E + ++P G L+ +L+
Sbjct: 246 PV--------SFKGDNLARFLVRVEEMRQSVKIVEQTIQKLPAGPYFNQKAKKPLMIRLR 297
Query: 306 LLGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFAIAKGLEGNQLADVV 365
G GE R E+P+GE Y+ G G P R ++R PTF NL + + +AD++
Sbjct: 298 --GQGEVYARTESPKGEFGVYLIG-DGSLRPYRVRVRSPTFKNLSVLPALAKDQMIADLI 354
Query: 366 VAIASIDPCLSCTDR 380
SID DR
Sbjct: 355 SIGGSIDLVFGEVDR 369
>pir||D69032 formate hydrogenlyase, subunit 5 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622350|gb|AAB85727.1| (AE000891) formate
hydrogenlyase, subunit 5 [Methanobacterium
thermoautotrophicum]
Length = 381
Score = 183 bits (459), Expect = 4e-45
Identities = 125/380 (32%), Positives = 192/380 (49%), Gaps = 25/380 (6%)
Query: 9 KVPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERIC 68
++ GP+H EP + L ++ E + + ++ +G N RGI+ I + + E++C
Sbjct: 14 EIAMGPVHSAAIEPYRVRLFVEDEIVRDAEITVGVNHRGIERIMEGLPVEKANSLTEKVC 73
Query: 69 GICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVL 128
GICS H V E+ G+E+PERA YIR+IIGELER+HSHLL L +G++T
Sbjct: 74 GICSGVHLWNSVLVAEKGLGVEIPERASYIRIIIGELERLHSHLLYLAHGNEVLGHETFS 133
Query: 129 HLTWLAREKVMDVLEAITGNRVNYSMMTIGGV--RRDIEEKHRRLLLDMIKYYREIMPQI 186
+ RE VM++L I GNRV Y + IGG+ R D++E + + + I E +
Sbjct: 134 MRLFYIRETVMELLRLIGGNRVQYGVPIIGGIRPRADLDEMKVQRIREGIDLIEEKVEAF 193
Query: 187 EDVFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKP 246
+ F D I +R+ I +K A+ + GPT R +GV D R ++ Y +
Sbjct: 194 AERFTSDPMIMSRITGVCPISRKDALRLHVTGPTLRATGVDLDIR--REMPCYDPFEFEV 251
Query: 247 IMPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKLKL 306
I ++ GDV +R+ EI++S+++I AL +P GK+ V +
Sbjct: 252 ITQDE-------GDVRANLLMRVLEIFESVKIIRQALRDLPGGKV---------VDRSWE 295
Query: 307 LGDGEGIGRY-EAPRGELVHYVKGKKGR-DGPVRWKMREPTFPNLFAIAKGLEGNQLADV 364
+ D I Y EAPRG L H + GR G V +R P+ N+ A+ G+ + D
Sbjct: 296 MQDTGIIKSYVEAPRGRLYHSYAIEDGRVRGSV---IRTPSMSNIGAMQYACIGHHITDA 352
Query: 365 VVAIASIDPCLSCTDRVAVI 384
+ I DPC +CTDR I
Sbjct: 353 QLGIVQCDPCFTCTDRAIEI 372
>emb|CAB52791.1| (AJ243656) hydrogenase large subunit [Methanobacterium
thermoautotrophicum]
Length = 376
Score = 178 bits (448), Expect = 8e-44
Identities = 118/379 (31%), Positives = 186/379 (48%), Gaps = 23/379 (6%)
Query: 9 KVPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERIC 68
++ G +H EP + L ++ E + + ++ +G N RGI+ I + + E++C
Sbjct: 11 EITMGTVHSAAIEPYRVRLFVEDEIVRDAEITVGVNHRGIERIMEGLPVEKANSLTEKVC 70
Query: 69 GICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVL 128
GICS H + E+ G+E+PERA YIR+I+GELERIHSHLL L +G++T
Sbjct: 71 GICSGVHLWNSILVAEKGLGVEIPERASYIRIIVGELERIHSHLLYLAHGNEVLGHETFS 130
Query: 129 HLTWLAREKVMDVLEAITGNRVNYSMMTIGGV--RRDIEEKHRRLLLDMIKYYREIMPQI 186
+ RE VM++L I GNRV Y + IGG+ R D++E + + + + + E +
Sbjct: 131 MRLFYIRETVMELLRLIGGNRVQYGVPIIGGIRPRADLDEMKTQRISEGMDFIEEKVEAF 190
Query: 187 EDVFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKP 246
+ F D + +R+ I +K A+ + GPT R +GV D R ++ Y
Sbjct: 191 AERFTSDPMVMSRITGVCPISRKDALRLHVTGPTLRATGVEFDLR--TEMPCYDPFEFDV 248
Query: 247 IMPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKLKL 306
I + GDV +R+ EI++S+ +I AL +P G+ V+ ++
Sbjct: 249 ITQDG-------GDVRANLLMRVLEIFESINIIRQALRDLPDGR--------VVDRNWEM 293
Query: 307 LGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWK-MREPTFPNLFAIAKGLEGNQLADVV 365
G EAPRG L H DG VR +R P+ N+ A+ G+ + D
Sbjct: 294 QDTGIVKSYVEAPRGRLYH---SYAIEDGRVRGSIIRTPSMSNIGAMQYACIGHHITDAQ 350
Query: 366 VAIASIDPCLSCTDRVAVI 384
+ I DPC +CTDR I
Sbjct: 351 LGIVQCDPCFTCTDRAIEI 369
>pir||D70413 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoD2
[similarity] - Aquifex aeolicus
>gi|2983737|gb|AAC07298.1| (AE000734) NADH dehydrogenase
I chain D [Aquifex aeolicus]
Length = 586
Score = 177 bits (445), Expect = 2e-43
Identities = 124/392 (31%), Positives = 193/392 (48%), Gaps = 31/392 (7%)
Query: 12 FGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGIC 71
+GP+HPG F+ L+GE++V DV LG RG++ +A +Y Q + +R+ I
Sbjct: 203 WGPLHPGTHGTIWFLFDLEGEKVVQSDVILGQLHRGMEKLAENLHYFQFIPYTDRMDYIS 262
Query: 72 SFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLT 131
+ + YV VE + G+EVPE+A YIR + EL+RI+SHLL LG D+G TV
Sbjct: 263 AICNELAYVETVERLLGVEVPEKARYIRTMFAELQRINSHLLWLGTGALDLGALTVFLYA 322
Query: 132 WLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDVFL 191
+ REK+MD++E G R+ + IGGV D+ E ++ IK + + + +
Sbjct: 323 FREREKIMDIIEGNAGYRLTSCFLRIGGVHYDLAEGTLDVVKHFIKDFPNRLKEYHTLLT 382
Query: 192 HDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMPED 251
+ R ++ +I ++ G GP RGSGV D R + Y ++ +
Sbjct: 383 RNRIWLRRTKDVGVITREDVHNYGLSGPVARGSGVPYDLRKLQPYAAYDEVEF-----DI 437
Query: 252 VTGEKARGDVYDRAAVRIGEIWQSLELIEHA---LDQIPKG--------KIKTFPKDNV- 299
GE GDVYDR VR+ E+ QS+ +IE L+++PK PK++V
Sbjct: 438 PVGEV--GDVYDRYLVRMEEMAQSVRIIEQCVQKLEKLPKDAPYLNKEHPAVIPPKEDVF 495
Query: 300 -----LVAKLKLLGDGEGIGRYEA------PRGELVHYVKGKKGRDGPVRWKMREPTFPN 348
+V +++ GE E PRGEL ++ KG P R ++R N
Sbjct: 496 HDLESMVKSFRVVVHGEDAPPGEVYFAGENPRGELGFFIY-SKGGGKPYRTRIRSGALYN 554
Query: 349 LFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
L K ++G +AD + + S+DP + TDR
Sbjct: 555 LSIFPKLIQGRTIADAIALLGSLDPVVGETDR 586
>pir||E72620 probable NADH dehydrogenase (ubiquinone) chain 7 APE1422 -
Aeropyrum pernix (strain K1) >gi|5105105|dbj|BAA80419.1|
(AP000061) 414aa long hypothetical NADH dehydrogenase
(ubiquinone) chain 7 [Aeropyrum pernix]
Length = 414
Score = 171 bits (430), Expect = 1e-41
Identities = 119/391 (30%), Positives = 192/391 (48%), Gaps = 42/391 (10%)
Query: 9 KVPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERIC 68
++ GP HPG + + +DG+ IV D +GY R ++ + R +++ + + ER+
Sbjct: 31 EIYIGPQHPGSGHM-RITIRVDGDIIVEADPDIGYVHRTMEKLGEIRGWIKPIPLFERMA 89
Query: 69 GICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVL 128
+ + YV AVE++ G+E P RA+Y+R ++ E+ RI +HL + G +G+ T+
Sbjct: 90 IHDACNITLPYVLAVEKLMGVEPPLRAKYLRTLLCEINRIGAHLYGFAIFGVFLGHSTMY 149
Query: 129 HLTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIED 188
RE +++ EA+TG R+ +S GG RRDI + ++Y R+ + +
Sbjct: 150 MWAMGDREVFIELAEALTGARLTHSYPIPGGARRDIPADFPDMARRAVRYMRKRLDEYAK 209
Query: 189 VFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIK-PI 247
+FL++ I +RL +IPKK A EMG VGP RGSG+ D R YP++ + P+
Sbjct: 210 IFLNNPVIRSRLEGVGVIPKKAAAEMGIVGPNARGSGIDYDVRLVHPYDAYPEIDFEVPV 269
Query: 248 MPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPK------------------- 288
E GD R VR+ EI QSL +IE A++ + K
Sbjct: 270 FEE--------GDALARTYVRVEEIKQSLRIIEQAVEWLEKHPREPIVDKYLYGKYPPLH 321
Query: 289 -------GKIKTFPKDNVLVAKLKLLGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKM 341
G+ K P VA +K + G IGR E RGE V+YV+ G + P R ++
Sbjct: 322 KKVLEAEGRAKLLP----TVAAMK-VPPGRAIGRAETGRGETVYYVESDGGVN-PYRVRI 375
Query: 342 REPTFPNLFAIAKGLEGNQLADVVVAIASID 372
+ N+ A L G+++ D+ S+D
Sbjct: 376 VTASARNVIAFKYVLPGHRVMDIPAIYGSLD 406
>sp|Q9ZDH4|NUOD_RICPR NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
D) >gi|7432629|pir||D71692 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain D RP354 - Rickettsia
prowazekii >gi|3860914|emb|CAA14814.1| (AJ235271) NADH
DEHYDROGENASE I CHAIN D (nuoD) [Rickettsia prowazekii]
Length = 389
Score = 171 bits (428), Expect = 2e-41
Identities = 118/395 (29%), Positives = 203/395 (50%), Gaps = 33/395 (8%)
Query: 8 VKVPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERI 67
+ + GP HP + IL +DGE + N D +G RG + + + Y+Q + +R+
Sbjct: 6 ITLNLGPQHPATHGVLRLILEMDGEVVNNADPHIGLLHRGTEKLIEHKTYLQAIPYFDRL 65
Query: 68 CGICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTV 127
+ H + AVE + VP RA++IRV+ EL RI +H LN+G DIG T
Sbjct: 66 DYVSPMCQEHAFALAVESLLECSVPRRAQFIRVLFSELTRILNHTLNIGSQALDIGATTP 125
Query: 128 LHLTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIE 187
L + REK+M+ E ++G+R++ + GGV D+ E LL D+ K+ + ++
Sbjct: 126 LLWLFEEREKIMEFYERVSGSRMHSNYFRPGGVAEDLPE---NLLEDINKFIEQFPSKLN 182
Query: 188 DV--FLHDSTI-EARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGI 244
D+ L+++ + + RL + ++ +K A++ G GP RGSG+ D R S VY ++
Sbjct: 183 DIENLLNENRLWKQRLVDIGVVSQKDAMDWGFSGPMLRGSGIAWDLRKSNPYDVYDEMDF 242
Query: 245 KPIMPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKT-FPK------- 296
+ + ++ GD YDR VRI E+++S+++I+ + ++PKG++KT PK
Sbjct: 243 EVPIGKN-------GDCYDRYLVRILEMYESIKIIKQCIVKMPKGQVKTDDPKLTPPTRG 295
Query: 297 -----DNVLVAKLKLLGD------GEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPT 345
++ KL + GE EAP+GE Y+ +G + P R +++ P
Sbjct: 296 KMKESMEAMIHHFKLYTEGYDVPIGETYKAVEAPKGEFGVYLY-SQGGNKPYRCRIKAPG 354
Query: 346 FPNLFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
F +L + +G+ +ADV+ IA++D DR
Sbjct: 355 FAHLQGLNFMSKGHLIADVITIIATLDIVFGEIDR 389
>gb|AAF97800.1|AF281148_4 (AF281148) NADH dehydrogenase I subunit D [Pseudomonas fluorescens]
Length = 409
Score = 169 bits (423), Expect = 7e-41
Identities = 116/395 (29%), Positives = 197/395 (49%), Gaps = 27/395 (6%)
Query: 5 EYWVKVPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVA 64
E ++ + GP HP + IL LDGE IV+ +GY+ RG + +A R+++ +
Sbjct: 23 EDYMFLNLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIPYT 82
Query: 65 ERICGICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGY 124
+RI + +N YV +VE++AGI+VPE+ + IR+++ E RI SHLL LG D+G
Sbjct: 83 DRIDYLGGVMNNLPYVLSVEKLAGIKVPEKVDVIRIMMAEFFRITSHLLFLGTYIQDVGA 142
Query: 125 DTVLHLTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMP 184
T + T+ R+K V+EAITG R++ + IGGV D+ +L+ D +++ + +
Sbjct: 143 MTPVFFTFTDRQKAYTVIEAITGFRLHPAWYRIGGVAHDLPRGWEKLVKDFVEWMPKRLD 202
Query: 185 QIEDVFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGI 244
+ L +S ++ R A K A+E G G R +G D R + Y +
Sbjct: 203 EYTKAALQNSILKGRTIGVAAYNTKEALEWGVTGAGLRSTGCDFDLRKARPYSGYENFEF 262
Query: 245 KPIMPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTF-------PKD 297
+ + A GD YDR VR+ E+ QS+++I+ + +P+G K PK+
Sbjct: 263 EVPL-------AANGDAYDRCMVRVEEMRQSIKIIDQCMRNMPEGPYKADHPLTTPPPKE 315
Query: 298 NVL------------VAKLKLLGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPT 345
L V+ ++ E EA +G +Y+ G R ++R P+
Sbjct: 316 RTLQHIETLITHFLQVSWGPVMPANESFQMIEATKGINSYYLTSDGGTMS-YRTRIRTPS 374
Query: 346 FPNLFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
+P+L I ++G+ +AD++ + SID ++ DR
Sbjct: 375 YPHLQQIPSVIKGSMVADLIAYLGSIDFVMADVDR 409
>gi|11466444 49 kDa subunit of NADH-plastoquinone [Mesostigma viride]
>gi|7259587|gb|AAF43888.1|AF166114_100 (AF166114) 49 kDa
subunit of NADH-plastoquinone [Mesostigma viride]
Length = 391
Score = 168 bits (422), Expect = 9e-41
Identities = 126/394 (31%), Positives = 185/394 (45%), Gaps = 36/394 (9%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
+ GP HP + + I+TLDGE +++ + LGY R ++ IA R VQ + R
Sbjct: 11 ISMGPHHPSMHGVLRLIVTLDGENVIDCEPVLGYLHRAMEKIAENRTIVQYLPYVTRWDY 70
Query: 70 ICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLH 129
+ + V A E++A IEVP+RA YIRVI+ EL RI SHLL LG DIG T
Sbjct: 71 LATMFTEAITVNAPEKLANIEVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFF 130
Query: 130 LTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDV 189
RE + D+ EA TG R+ ++ IGGV D+ LD Y+ + + E +
Sbjct: 131 YILREREMIYDLFEAATGMRMMHNYFRIGGVASDLPYGWVDKCLDFSDYFLPKVDEYERL 190
Query: 190 FLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMP 249
++ R+R+ I ++ AI G GP R SGV+ D R + Y +L
Sbjct: 191 ITNNPIFLKRVRDVGFISREEAINWGLSGPMLRASGVQWDLRKVDNYECYGELDWNVQWQ 250
Query: 250 EDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKLK---- 305
D GD R VR+GE+ +S ++I+ AL IP G P +N+ +L
Sbjct: 251 SD-------GDCLARYLVRLGEMRESTKIIQQALKAIPGG-----PYENLEARRLSKGRK 298
Query: 306 -------------------LLGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTF 346
+ E R EAP+GEL ++ G P RWK+R P F
Sbjct: 299 SEWNNFEYQFVGKKPSPTFKIPKQEHYVRVEAPKGELGVFLMG-DDNVFPWRWKIRSPGF 357
Query: 347 PNLFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
N+ + + + G +LAD++ + SID + DR
Sbjct: 358 INVQILPELVRGMKLADIMTILGSIDIIMGEVDR 391
>sp|Q9RU89|NUOD_DEIRA NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
D) >gi|7473200|pir||A75388 NADH dehydrogenase I, D
subunit - Deinococcus radiodurans (strain R1)
>gi|6459264|gb|AAF11069.1|AE001994_5 (AE001994) NADH
dehydrogenase I, D subunit [Deinococcus radiodurans]
Length = 401
Score = 165 bits (414), Expect = 8e-40
Identities = 118/387 (30%), Positives = 180/387 (46%), Gaps = 27/387 (6%)
Query: 13 GPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGICS 72
GP HP + ++ +DGE + V+ +GY G + R Y Q + A R + S
Sbjct: 23 GPQHPSTHGVLRLVVDMDGEYVTRVEPHMGYLHTGFEKTMEHRTYQQNVTYAPRTDYLHS 82
Query: 73 FSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLTW 132
FSH YV +VE++ G EVPERA +RVI+ EL RIHSHL+ +G D+G T +
Sbjct: 83 FSHELAYVLSVEKLLGAEVPERANVVRVILHELGRIHSHLVFVGTGLLDLGALTPFFYAF 142
Query: 133 LAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDVFLH 192
+E D+ EA+ G R+N +GG+ RD+ E + + + + +F
Sbjct: 143 REKEACQDLFEAVCGYRMNQGYFRVGGLARDLPEGWTARVEAFLNQMERGVEEYTTLFAA 202
Query: 193 DSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMPEDV 252
+ R + +IP A+++G GP R SGV D R + D I D
Sbjct: 203 NPIFLDRAKGVGVIPADAALDLGLTGPNLRASGVPLDNRKDHPYCGFEDYDFNVISSPD- 261
Query: 253 TGEKARGDVYDRAAVRIGEIWQSLELIEHALDQI-------PKGKIKTFPKDNV------ 299
GD R +R+ E +S+++I L ++ P KI P+ +
Sbjct: 262 ------GDSLARFNMRLLEFSESIKIIRQGLQKLRPGPIKDPNRKISLPPRHELETSMEA 315
Query: 300 LVAKLKLLGD------GEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFAIA 353
++ KL+ + GE E+ RGE+ +YV G P R K+R P+F NL A+
Sbjct: 316 VIHHFKLVTEGFHPPLGEAYVPIESARGEVGYYVI-SDGGSMPYRVKIRAPSFVNLQALE 374
Query: 354 KGLEGNQLADVVVAIASIDPCLSCTDR 380
G Q AD++ +A+IDP L DR
Sbjct: 375 YACVGVQFADLITILATIDPVLGDVDR 401
>pir||D83316 NADH dehydrogenase I chain C,D PA2639 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948707|gb|AAG06027.1|AE004692_6 (AE004692) NADH
dehydrogenase I chain C,D [Pseudomonas aeruginosa]
Length = 593
Score = 164 bits (412), Expect = 1e-39
Identities = 115/395 (29%), Positives = 195/395 (49%), Gaps = 27/395 (6%)
Query: 5 EYWVKVPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVA 64
E ++ + GP HP + IL LDGE I++ ++GY+ RG + +A R+++ +
Sbjct: 207 EDYMFLNLGPNHPSAHGAFRIILQLDGEEIIDCVPEIGYHHRGAEKMAERQSWHSFIPYT 266
Query: 65 ERICGICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGY 124
+RI + +N YV +VE++AGI+VP+R + IR+++ E RI +HLL LG D+G
Sbjct: 267 DRIDYLGGVMNNLPYVLSVEKLAGIKVPQRVDVIRIMMAEFFRILNHLLYLGTYIQDVGA 326
Query: 125 DTVLHLTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMP 184
T + T+ R++ V+EAITG R++ + IGGV D+ +L+ + + + + +
Sbjct: 327 MTPVFFTFTDRQRAYKVVEAITGFRLHPAWYRIGGVAHDLPRGWDKLVREFLDWMPKRLD 386
Query: 185 QIEDVFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGI 244
+ E L +S + R A K A+E G G R +G D R + Y +
Sbjct: 387 EYETAALKNSILRGRTIGVAQYNTKEALEWGTTGAGLRATGCDFDLRKARPYSGYENFEF 446
Query: 245 KPIMPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTF-------PKD 297
+ + + GD YDR V++GE+ QSL +IE L +P+G K PK+
Sbjct: 447 EVPLAHN-------GDAYDRCMVKMGEMRQSLRIIEQCLKNMPEGPYKADHPLTTPPPKE 499
Query: 298 NVL------------VAKLKLLGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPT 345
L V+ ++ E EA +G +Y+ G R ++R P+
Sbjct: 500 RTLQHIETLITHFLQVSWGPVMPANEAFQMIEATKGINSYYLT-SDGSTMSYRTRIRTPS 558
Query: 346 FPNLFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
F +L I + G+ +AD++ + SID ++ DR
Sbjct: 559 FAHLQQIPSVINGSMIADLIAYLGSIDFVMADVDR 593
>gi|11467261 NADH dehydrogenase 49KDa protein [Zea mays]
>gi|128833|sp|P25709|NUCC_MAIZE NADH-PLASTOQUINONE
OXIDOREDUCTASE 49 KD SUBUNIT, CHLOROPLAST
>gi|100954|pir||S13600 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) 49K chain - maize chloroplast
>gi|14301|emb|CAA39868.1| (X56521) ndhH subunit of NADH
dehydrogenase [Zea mays] >gi|902290|emb|CAA60354.1|
(X86563) NADH dehydrogenase 49KDa protein [Zea mays]
Length = 393
Score = 164 bits (411), Expect = 2e-39
Identities = 121/389 (31%), Positives = 188/389 (48%), Gaps = 26/389 (6%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
V GP HP + + I+TLDGE +++ + LGY RG++ IA R+ +Q + R
Sbjct: 13 VNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRSIIQYLPYVTRWDY 72
Query: 70 ICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLH 129
+ + V A E + I++P+RA YIRVI+ EL RI SHLL LG D+G T
Sbjct: 73 LATMFTEAITVNAPEFLENIQIPKRASYIRVIMLELSRIASHLLWLGPFMADLGAQTPFF 132
Query: 130 LTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDV 189
+ RE + D+ EA+TG R+ ++ IGGV D+ LD Y+ + + + +++
Sbjct: 133 YIFRERELIYDLFEAVTGMRMMHNYFRIGGVAADLPYGWMDKCLDFCDYFLQGVVEYQEL 192
Query: 190 FLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMP 249
+ R+ I + A+ G GP R SG++ D R + Y K
Sbjct: 193 ITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKIDPYESYNQFDWK---- 248
Query: 250 EDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAK------ 303
V +K GD R VR+GE+ +S+++I+ A+++IP G + AK
Sbjct: 249 --VQWQK-EGDSLARYLVRVGEMRESIKIIQQAVEKIPGGPYENLEARRFKKAKNPEWND 305
Query: 304 --LKLLG----------DGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFA 351
+ LG E R EAP+GEL Y+ G P RWK+R P F NL
Sbjct: 306 FEYRFLGKKPSPNFELSKQELYVRVEAPKGELGIYLVGDDSL-FPWRWKIRPPGFINLQI 364
Query: 352 IAKGLEGNQLADVVVAIASIDPCLSCTDR 380
+ + ++ +LAD++ + SID + DR
Sbjct: 365 LPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>emb|CAB67226.1| (AJ271079) NADH-plastoquinone oxidoreductase 49 kD subunit
[Oenothera elata subsp. hookeri]
Length = 393
Score = 163 bits (408), Expect = 4e-39
Identities = 122/393 (31%), Positives = 186/393 (47%), Gaps = 34/393 (8%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
V GP HP + + ILTLDGE +++ + LGY RG++ IA R +Q + R
Sbjct: 13 VNMGPHHPSMHGVLRLILTLDGEDVIDCEPILGYLHRGMEKIAENRTVIQYLPYVTRWDY 72
Query: 70 ICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLH 129
+ + + E++ I+VP+RA YIR+I+ EL RI SHLL LG DIG T
Sbjct: 73 LATMFTEAITINGPEQLGNIQVPKRASYIRIIMLELSRIASHLLWLGPFMADIGAQTPFF 132
Query: 130 LTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDV 189
+ RE V D+ EA TG R+ ++ IGGV D+ LD Y+ + + + +
Sbjct: 133 YIFRERELVYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLTAVSEYQKL 192
Query: 190 FLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMP 249
+ R+ II + AI G GP R SG+ D R ++ Y +L
Sbjct: 193 ITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIEWDLRKVDRYECYGEL------D 246
Query: 250 EDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKLKLLGD 309
++ +K GD R VR+ E+ +S+++I+ AL+ IP G P +N+ + D
Sbjct: 247 WEIRWQK-EGDSLARYLVRMSEMTESIKIIQQALEGIPGG-----PYENLEIRCFDREKD 300
Query: 310 GEGIG------------RYEAPRGELVHYVKGKKGRDG----------PVRWKMREPTFP 347
E G +E P+ EL V+ KG G P RWK+R P F
Sbjct: 301 PEWDGFEYRFISKKPSPTFELPKQELYVRVEAPKGELGIFLIGDQSGFPWRWKIRPPGFI 360
Query: 348 NLFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
NL + + ++ +LAD++ + SID + DR
Sbjct: 361 NLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|11466853 NADH dehydrogenase 49kDa protein [Oryza sativa]
>gi|128835|sp|P12132|NUCC_ORYSA NADH-PLASTOQUINONE
OXIDOREDUCTASE 49 KD SUBUNIT, CHLOROPLAST (ORF 393)
>gi|66200|pir||DERZ49 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) 49K protein - rice chloroplast
>gi|12056|emb|CAA33911.1| (X15901) NADH dehydrogenase
49kDa protein [Oryza sativa] >gi|226677|prf||1603356DE
NADH dehydrogenase 49kD protein [Oryza sativa]
Length = 393
Score = 162 bits (406), Expect = 7e-39
Identities = 123/394 (31%), Positives = 186/394 (46%), Gaps = 36/394 (9%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
V GP HP + + I+TLDGE +++ + LGY RG++ IA R +Q + R
Sbjct: 13 VNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDY 72
Query: 70 ICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLH 129
+ + V A E + I++P+RA YIRVI+ EL RI SHLL LG D+G T
Sbjct: 73 LATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADLGAQTPFF 132
Query: 130 LTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDV 189
+ RE + D+ EA TG R+ ++ IGGV D+ LD Y+ + + + +
Sbjct: 133 YIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRGVIEYQQL 192
Query: 190 FLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMP 249
+ R+ I + A+ G GP R SG++ D R + Y K
Sbjct: 193 ITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDLYESYNQFDWK---- 248
Query: 250 EDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKLKL--- 306
V +K GD R VRIGE+ +S+++I+ A+++IP G P +N+ V + K
Sbjct: 249 --VQWQK-EGDSLARYLVRIGEMRESIKIIQQAVEKIPGG-----PYENLEVRRFKKAKN 300
Query: 307 --------------------LGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTF 346
L E R EAP+GEL Y+ G P RWK+R P F
Sbjct: 301 SEWNDFEYRFLGKKPSPNFELSKQELYARVEAPKGELGIYLVGDDSL-FPWRWKIRPPGF 359
Query: 347 PNLFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
NL + + ++ +LAD++ + SID + DR
Sbjct: 360 INLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>sp|P33600|NUOD_ECOLI NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
4) (NUO4) >gi|431018|gb|AAA03535.1| (L25055) NADH
dehydrogenase [Escherichia coli]
Length = 407
Score = 162 bits (406), Expect = 7e-39
Identities = 112/387 (28%), Positives = 192/387 (48%), Gaps = 26/387 (6%)
Query: 13 GPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGICS 72
GP HP + +L LDGE IV+ +GY+ RG + + R+++ + +RI +
Sbjct: 28 GPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGG 87
Query: 73 FSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLTW 132
+ YV AVE++AGI VP+R IRV++ EL RI+SHLL + D+G T + +
Sbjct: 88 CVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAF 147
Query: 133 LAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDVFLH 192
R+K+ D++EAITG R++ + IGGV D+ RLL + + + + + E L
Sbjct: 148 TDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLASYEKAALQ 207
Query: 193 DSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMPEDV 252
++ ++ R + A + +K A+E G G R +G+ D R + Y + + + V
Sbjct: 208 NTILKGRSQGVAPMARKEALEWGTTGAGLRATGIDFDVRKARPYSGYENFDFEIPVGGGV 267
Query: 253 TGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTF-------PKDNVL----- 300
+ D Y R +++ E+ QSL ++E L+ +P+G K PK+ L
Sbjct: 268 S------DCYTRVMLKVEELRQSLRILEQCLNNMPEGPFKADHPLTTPPPKERTLQHIET 321
Query: 301 -------VAKLKLLGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFAIA 353
V+ ++ E EA +G +Y+ G R ++R P+F +L I
Sbjct: 322 LITHFLQVSWGPVMPANESFQMIEATKGINSYYLT-SDGSTMSYRTRVRTPSFAHLQQIP 380
Query: 354 KGLEGNQLADVVVAIASIDPCLSCTDR 380
+ G+ ++D++V + SID +S DR
Sbjct: 381 AAIRGSLVSDLIVYLGSIDFVMSDVDR 407
>sp|Q37720|NUCM_PYLLI NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 7) >gi|1076191|pir||S53054 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 7 - brown alga
(Pylaiella littoralis) >gi|728615|emb|CAA88557.1|
(Z48623) NADH dehydrogenase (ubiquinone), subunit 7
[Pilayella littoralis]
Length = 398
Score = 162 bits (405), Expect = 9e-39
Identities = 114/390 (29%), Positives = 188/390 (47%), Gaps = 27/390 (6%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
+ FGP HP + IL L+GE + D +G RG + + + Y Q + +R+
Sbjct: 17 INFGPQHPAAHGVLRLILELNGEVVQRADPHIGLLHRGTEKLIEAKTYFQALPYFDRLDY 76
Query: 70 ICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLH 129
+ HTY +VE + + +P RA++IRV+ E+ RI +HLL +G D+G T
Sbjct: 77 VSMMCQEHTYALSVENLLQVSIPRRAQFIRVLFAEITRILNHLLAVGCHAMDVGAMTPFL 136
Query: 130 LTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDV 189
+ REK+M+ E ++G R++ S GGV +DI + + + + + +IE++
Sbjct: 137 WAFEEREKLMEFYERVSGARMHASYFRPGGVSQDISVGLVDDIFAFVAQFGQRLDEIEEM 196
Query: 190 FLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMP 249
+ + RL + ++ + AI+ G G RGSG+R D R +E +Y DL + ++
Sbjct: 197 LTDNRIWQERLVDIGVVSAQEAIDWGFSGVMLRGSGIRWDLRKNEPYEIYSDLNFQGVVG 256
Query: 250 EDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIK-----------TFPKDN 298
+ GD YDR R+ E+ QSL +I L+++P+G +K + K +
Sbjct: 257 K-------TGDCYDRYLARVEEMRQSLSIIYQCLNKMPRGSVKIDDAKISPPSRSEVKQS 309
Query: 299 V--LVAKLKLLGD------GEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLF 350
+ L+ KL + GE EAP+GE Y+ KG P R K++ P F +L
Sbjct: 310 MESLIHHFKLYTEGVFVPAGETYTATEAPKGEFGVYLV-SKGSSRPYRCKIKAPGFSHLQ 368
Query: 351 AIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
+ + LADVV I + D DR
Sbjct: 369 GLNFMACSHMLADVVTIIGTQDIVFGEVDR 398
>sp|O98691|NUCC_HORVU NADH-PLASTOQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT, CHLOROPLAST
>gi|4150868|emb|CAA09811.1| (AJ011848) ndhH protein
[Hordeum vulgare]
Length = 393
Score = 161 bits (404), Expect = 1e-38
Identities = 122/394 (30%), Positives = 186/394 (46%), Gaps = 36/394 (9%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
V GP HP + + I+TLDGE +++ + LGY RG++ IA R +Q + R
Sbjct: 13 VNMGPQHPSMHGVLRLIVTLDGEDVIDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDY 72
Query: 70 ICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLH 129
+ + V A E + I++P+RA YIRVI+ EL RI SHLL LG D+G T
Sbjct: 73 LATMFTEAITVNAPEFLENIQIPQRASYIRVIMLELSRIASHLLWLGPFMADLGAQTPFF 132
Query: 130 LTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDV 189
+ RE + D+ EA TG R+ ++ IGGV D+ LD Y+ + + + +
Sbjct: 133 YIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLRGVVEYQQL 192
Query: 190 FLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMP 249
+ R+ I + A+ G GP R SG++ D R + Y K
Sbjct: 193 ITQNPIFLERVEGVGFISGEEAVNWGLSGPMLRASGIQWDLRKVDPYESYNQFDWK---- 248
Query: 250 EDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKLKL--- 306
V +K GD R VR+GE+ +S+++I+ A+++IP G P +N+ V + K
Sbjct: 249 --VQWQK-EGDSLARYLVRVGEMSESIKIIQQAIEKIPGG-----PYENLEVRRFKKEKN 300
Query: 307 --------------------LGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTF 346
L E R EAP+GEL Y+ G P RWK+R P F
Sbjct: 301 SEWNDFEYKFLGKKPSPNFELSRQELYVRVEAPKGELGIYLVGDDSL-FPWRWKIRPPGF 359
Query: 347 PNLFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
NL + + ++ +LAD++ + SID + DR
Sbjct: 360 INLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>emb|CAA48363.1| (X68301) NADH dehydrogenase I, subunit nuoD [Escherichia coli]
Length = 407
Score = 161 bits (403), Expect = 2e-38
Identities = 112/387 (28%), Positives = 192/387 (48%), Gaps = 26/387 (6%)
Query: 13 GPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGICS 72
GP HP + +L LDGE IV+ +GY+ RG + + R+++ + +RI +
Sbjct: 28 GPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGG 87
Query: 73 FSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLTW 132
+ YV AVE++AGI VP+R IRV++ EL RI+SHLL + D+G T + +
Sbjct: 88 CVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAF 147
Query: 133 LAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDVFLH 192
R+K+ D++EAITG R++ + IGGV D+ RLL + + + + + E L
Sbjct: 148 TDRQKIYDLVEAITGFRMHPAWFRIGGVADDLPRGWDRLLREFLDWMPKRLASYEKAALQ 207
Query: 193 DSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMPEDV 252
++ ++ R + A + +K A+E G G R +G+ D R + Y + + + V
Sbjct: 208 NTILKGRSQGVAPMARKEALEWGTTGAGLRATGIDFDVRKARPYSGYENFDFEIPVGGGV 267
Query: 253 TGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTF-------PKDNVL----- 300
+ D Y R +++ E+ QSL ++E L+ +P+G K PK+ L
Sbjct: 268 S------DCYTRVMLKVEELRQSLRILEQCLNNMPEGPFKRDHPLTTPPPKERTLQHIET 321
Query: 301 -------VAKLKLLGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFAIA 353
V+ ++ E EA +G +Y+ G R ++R P+F +L I
Sbjct: 322 LITHFLQVSWGPVMPANESFQMIEATKGINSYYLT-SDGSTMSYRTRVRTPSFAHLQQIP 380
Query: 354 KGLEGNQLADVVVAIASIDPCLSCTDR 380
+ G+ ++D++V + SID +S DR
Sbjct: 381 AAIRGSLVSDLIVYLGSIDFVMSDVDR 407
>gi|11467869 49 kDa subunit of NADH-plastoquinone oxidoreductase [Nephroselmis
olivacea] >gi|5880798|gb|AAD54891.1|AF137379_114
(AF137379) 49 kDa subunit of NADH-plastoquinone
oxidoreductase [Nephroselmis olivacea]
Length = 391
Score = 161 bits (403), Expect = 2e-38
Identities = 125/394 (31%), Positives = 183/394 (45%), Gaps = 36/394 (9%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
V GP HP + + I+TLDGE +++ + +GY RG++ IA R VQ + R
Sbjct: 11 VSMGPHHPSMHGVLRLIVTLDGENVLDCEPVVGYLHRGMEKIAENRTIVQYLPYVTRWDY 70
Query: 70 ICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLH 129
+ + V A E +A IEVP RA Y+RVI+ EL RI SHLL LG D+G T
Sbjct: 71 LATMFTEAITVNAPERLANIEVPRRASYLRVIMLELSRIASHLLWLGPFMADLGAQTPFF 130
Query: 130 LTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDV 189
RE + D+ EA TG R+ ++ +GGV D+ LD +Y+ + + E +
Sbjct: 131 YILREREMIYDLFEAATGMRMMHNYFRVGGVAADVPYGWIDKCLDFCEYFLPKVDEYEAL 190
Query: 190 FLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMP 249
+ R++ I + AI G GP R SGV D R ++ Y D
Sbjct: 191 ITRNPIFLKRVKGVGTISPQQAINWGLSGPMLRASGVSWDLRKVDRYECYED------FH 244
Query: 250 EDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKL----- 304
V E+ GD R VRI E+ S ++++ AL IP G P +N+ +L
Sbjct: 245 WSVESEET-GDCLARYLVRIREMRTSTKIVQQALKSIPGG-----PTENLEARQLSQGRT 298
Query: 305 --------KLLGD----------GEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTF 346
+ LG E R EAP+GEL ++ G P RWK+R P F
Sbjct: 299 SPWNEFDYQFLGKKASPTFKMPRQEHYVRVEAPKGELGVFLIG-DDHVFPWRWKIRPPGF 357
Query: 347 PNLFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
N+ + ++G +LAD++ + SID + DR
Sbjct: 358 INVQILPNLVQGMKLADIMTILGSIDIIMGEVDR 391
>gi|11466310 NADH dehydrogenase subunit 7 [Cafeteria roenbergensis]
>gi|11134161|sp|Q9TAJ7|NUCM_CAFRO NADH-UBIQUINONE
OXIDOREDUCTASE 49 KDA SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 7) >gi|6180092|gb|AAF05789.1|AF193903_12
(AF193903) NADH dehydrogenase subunit 7 [Cafeteria
roenbergensis]
Length = 398
Score = 161 bits (403), Expect = 2e-38
Identities = 115/388 (29%), Positives = 187/388 (47%), Gaps = 27/388 (6%)
Query: 12 FGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGIC 71
FGP HP + IL L+GE I N D +G RG + + RNY+Q + +R+ +
Sbjct: 19 FGPQHPAAHGVLRLILELNGETIKNADPHIGLLHRGTEKLIENRNYLQALPYFDRLDYVS 78
Query: 72 SFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLT 131
H Y AVE + GI +P+RA++IRV+ E+ RI +HLL +G D+G T L
Sbjct: 79 MMVQEHAYSLAVERLYGINIPQRAQWIRVLFSEITRILNHLLAIGCHSMDVGAMTPLLWG 138
Query: 132 WLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDVFL 191
+ REK+M+ E ++G R++ S + GGV +D+ + I + + +IE++
Sbjct: 139 FEEREKLMEFYERVSGARMHASYIRPGGVAQDLPSGFVEDVYSFILDFSVRLDEIEELLT 198
Query: 192 HDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIK-PIMPE 250
++ + RL N I+ K AI+ G G R +G+ D R S+ +Y + + P+
Sbjct: 199 NNRIWKQRLVNVGIVTAKQAIQNGFSGVLLRSTGIPWDLRRSQPYEIYDKVPFRIPV--- 255
Query: 251 DVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKLKLLGDG 310
RGD YDR +R+ E+ QSL ++ L +P G IK+ K V + ++
Sbjct: 256 -----GTRGDCYDRYLIRMQEMRQSLRIMMACLKYLPGGSIKSDDKKFVPPLRWEMKNSM 310
Query: 311 EGI--------GRYEAPRGELVHYVKGKKGRDG----------PVRWKMREPTFPNLFAI 352
E + ++ P G+ V+ KG G P R K++ P F +L +
Sbjct: 311 ESVIHHFKYFTEGFKVPAGQTYAAVEAPKGEMGVFLISDGSNQPFRCKIKAPGFFHLQNL 370
Query: 353 AKGLEGNQLADVVVAIASIDPCLSCTDR 380
+ + + +ADVV I + D DR
Sbjct: 371 PEMTKHHMIADVVTIIGTQDIVFGEVDR 398
>gi|11466758 ORF392 [Marchantia polymorpha] >gi|128834|sp|P12131|NUCC_MARPO
NADH-PLASTOQUINONE OXIDOREDUCTASE 49 KD SUBUNIT,
CHLOROPLAST (ORF 392) >gi|81368|pir||A05025 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 392 -
liverwort (Marchantia polymorpha) chloroplast
>gi|11729|emb|CAA28140.1| (X04465) ORF392 [Marchantia
polymorpha]
Length = 392
Score = 161 bits (402), Expect = 2e-38
Identities = 125/394 (31%), Positives = 188/394 (46%), Gaps = 36/394 (9%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
V GP HP + + I+TLDGE +++ + LGY RG++ IA R VQ + R
Sbjct: 12 VSMGPHHPSMHGVLRLIVTLDGEDVLDCEPVLGYLHRGMEKIAENRTIVQYLPYVTRWDY 71
Query: 70 ICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLH 129
+ + V A E++ I+VP+RA YIR+I+ EL RI SHLL LG DIG T
Sbjct: 72 LATMFTEAITVNAPEKLTNIQVPKRASYIRIIMLELSRIASHLLWLGPFMADIGAQTPFF 131
Query: 130 LTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDV 189
+ RE + D+ E+ TG R+ ++ IGGV D+ LD Y+ + + E +
Sbjct: 132 YIFREREMIYDLFESATGMRMMHNYFRIGGVAVDLPYGWIDKCLDFCDYFLPKINEYERL 191
Query: 190 FLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMP 249
++ R+ + ++ AI G GP R SGV+ D R + Y +L K
Sbjct: 192 ITNNPIFLKRVEGIGTVTREEAINWGLSGPMLRASGVQWDLRKVDHYECYDELDWK---- 247
Query: 250 EDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKLK---- 305
+ +K GD R VRIGE+ +S+++I+ AL IP G P +N+ +L
Sbjct: 248 --IQWQK-EGDSLARYLVRIGEMKESVKIIQQALKAIPGG-----PFENLEARRLNQGKN 299
Query: 306 -------------------LLGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTF 346
L E R EAP+GEL ++ G P R K+R P F
Sbjct: 300 SEWNLFEYQFISKKPSPTFKLPKQEHYVRVEAPKGELGIFLIGDDS-VFPWRLKIRSPGF 358
Query: 347 PNLFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
NL + + ++G +LAD++ + SID + DR
Sbjct: 359 INLQILPQLVKGMKLADIMTILGSIDIIMGEVDR 392
>pir||D65000 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I, chain C-D -
Escherichia coli >gi|1788622|gb|AAC75346.1| (AE000317)
NADH dehydrogenase I chain C, D [Escherichia coli K12]
Length = 600
Score = 161 bits (402), Expect = 2e-38
Identities = 112/387 (28%), Positives = 190/387 (48%), Gaps = 26/387 (6%)
Query: 13 GPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGICS 72
GP HP + +L LDGE IV+ +GY+ RG + + R+++ + +RI +
Sbjct: 221 GPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGG 280
Query: 73 FSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLTW 132
+ YV AVE++AGI VP+R IRV++ EL RI+SHLL + D+G T + +
Sbjct: 281 CVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAF 340
Query: 133 LAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDVFLH 192
R+K+ D++EAITG R++ + IGGV D+ RLL + + + + + E L
Sbjct: 341 TDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLASYEKAALQ 400
Query: 193 DSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMPEDV 252
++ ++ R + A K A+E G G R +G+ D R + Y + + + V
Sbjct: 401 NTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYENFDFEIPVGGGV 460
Query: 253 TGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTF-------PKDNVL----- 300
+ D Y R +++ E+ QSL ++E L+ +P+G K PK+ L
Sbjct: 461 S------DCYTRVMLKVEELRQSLRILEQCLNNMPEGPFKADHPLTTPPPKERTLQHIET 514
Query: 301 -------VAKLKLLGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFAIA 353
V+ ++ E EA +G +Y+ G R ++R P+F +L I
Sbjct: 515 LITHFLQVSWGPVMPANESFQMIEATKGINSYYLT-SDGSTMSYRTRVRTPSFAHLQQIP 573
Query: 354 KGLEGNQLADVVVAIASIDPCLSCTDR 380
+ G+ ++D++V + SID +S DR
Sbjct: 574 AAIRGSLVSDLIVYLGSIDFVMSDVDR 600
>dbj|BAA16115.1| (D90859) NADH DEHYDROGENASE I CHAIN D (EC 1.6.5.3) (NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 4) (NUO4). [Escherichia coli]
>gi|1799653|dbj|BAA16120.1| (D90860) NADH DEHYDROGENASE
I CHAIN D (EC 1.6.5.3) (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN 4) (NUO4). [Escherichia coli]
Length = 407
Score = 161 bits (402), Expect = 2e-38
Identities = 112/387 (28%), Positives = 190/387 (48%), Gaps = 26/387 (6%)
Query: 13 GPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGICS 72
GP HP + +L LDGE IV+ +GY+ RG + + R+++ + +RI +
Sbjct: 28 GPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGG 87
Query: 73 FSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLTW 132
+ YV AVE++AGI VP+R IRV++ EL RI+SHLL + D+G T + +
Sbjct: 88 CVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAF 147
Query: 133 LAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDVFLH 192
R+K+ D++EAITG R++ + IGGV D+ RLL + + + + + E L
Sbjct: 148 TDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLDWMPKRLASYEKAALQ 207
Query: 193 DSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMPEDV 252
++ ++ R + A K A+E G G R +G+ D R + Y + + + V
Sbjct: 208 NTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKARPYSGYENFDFEIPVGGGV 267
Query: 253 TGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTF-------PKDNVL----- 300
+ D Y R +++ E+ QSL ++E L+ +P+G K PK+ L
Sbjct: 268 S------DCYTRVMLKVEELRQSLRILEQCLNNMPEGPFKADHPLTTPPPKERTLQHIET 321
Query: 301 -------VAKLKLLGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFAIA 353
V+ ++ E EA +G +Y+ G R ++R P+F +L I
Sbjct: 322 LITHFLQVSWGPVMPANESFQMIEATKGINSYYLT-SDGSTMSYRTRVRTPSFAHLQQIP 380
Query: 354 KGLEGNQLADVVVAIASIDPCLSCTDR 380
+ G+ ++D++V + SID +S DR
Sbjct: 381 AAIRGSLVSDLIVYLGSIDFVMSDVDR 407
>pir||F72281 hypothetical protein TM1216 - Thermotoga maritima (strain MSB8)
>gi|4981769|gb|AAD36291.1|AE001778_12 (AE001778) NADH
dehydrogenase, 49 kDa subunit, putative [Thermotoga
maritima]
Length = 368
Score = 161 bits (402), Expect = 2e-38
Identities = 107/375 (28%), Positives = 191/375 (50%), Gaps = 14/375 (3%)
Query: 9 KVPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERIC 68
K+ FGP HPG+ + ++G+ + G+ RG + + RR + + + RIC
Sbjct: 5 KLFFGPNHPGMHGNFSVHMYVEGDIVKKARPVPGFLHRGFEKLMERRYWYSNISLIPRIC 64
Query: 69 GICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVL 128
+ Y A+E++A +EVPERA++IR+I+ EL RI +H+ +G +G +G T
Sbjct: 65 VPEPDINEICYAMAIEKIAKVEVPERAQWIRMIVLELARIANHIWTVGGIGGPLGLYTAS 124
Query: 129 HLTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIED 188
H R++++D+ EA++G RV + + GGVR+++ K ++ + Y +P E+
Sbjct: 125 HWGVADRDRILDIFEALSGARVYHMYIIPGGVRKNMTPKIEEMIWKTLDYIESRLPDYEN 184
Query: 189 VFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIM 248
+ + + +RLR I+ ++ A+EMG G R +GV D R + Y + +
Sbjct: 185 LIFKNRIVHSRLRGRLILTREQAVEMGVTGVGLRATGVEYDIRKVDPYLFYDRVEFEVPT 244
Query: 249 PEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFP--KDNVLVAKLKL 306
D GD + R ++ EI QS+++I AL+++P+ P + N L ++
Sbjct: 245 ATD-------GDAFSRVYLKFKEIPQSIKIIRQALEKMPQADRVNVPIGRGNGL---RRI 294
Query: 307 LGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFP-NLFAIAKGLEGNQLADVV 365
+ G E+ RGE +V G++ P R +R ++P L+ I K L G ++ DV
Sbjct: 295 VPKGMAYAHVESTRGEYGFFVV-SDGKNKPYRVAVRGASYPQGLYGIEKYLPGTRIEDVP 353
Query: 366 VAIASIDPCLSCTDR 380
+ +A++D C DR
Sbjct: 354 IWLATMDVCAPEIDR 368
>gi|11466215 NADH dehydrogenase subunit 7 [Naegleria gruberi]
>gi|10444250|gb|AAG17816.1|AF288092_41 (AF288092) NADH
dehydrogenase subunit 7 [Naegleria gruberi]
Length = 395
Score = 161 bits (402), Expect = 2e-38
Identities = 116/390 (29%), Positives = 189/390 (47%), Gaps = 31/390 (7%)
Query: 12 FGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGIC 71
FGP HP + I+ LDGE I N D +G RG + + + Y+Q + +R+ +
Sbjct: 16 FGPQHPAAHGVLRLIVELDGEIIKNADPHIGLLHRGTEKLLEYKTYIQGLPYFDRLDYVS 75
Query: 72 SFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLT 131
HTY A+E + EVP RA+YIRV+ E+ R+ +HLL++ D+G T
Sbjct: 76 MMCQEHTYCLAIERLLKCEVPLRAQYIRVLFSEITRLLNHLLSITTHAMDVGALTPFLWA 135
Query: 132 WLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDVFL 191
+ REK+M+ E ++G R++ + GGV D+ + + D I + + ++E++
Sbjct: 136 FEEREKLMEFYERVSGARMHANYFRPGGVSYDLPKGLLHDIYDFIYSFASRIDEMEELLT 195
Query: 192 HDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMPED 251
+ + RL + ++ + A++MG G RGSG+ D R E +Y L +P
Sbjct: 196 TNRIWKQRLVDIGVVNYRDALDMGFTGVMLRGSGIPWDLRKCEPYEIYKQLNF--YIPVG 253
Query: 252 VTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKG---------------KIKTFPK 296
+ GD YDR VR+ E+ QS+ +I L++IP G +IKT +
Sbjct: 254 I-----YGDCYDRYLVRMSEMRQSISIIHQCLNKIPNGLVRVDNHKITPPYRKQIKTSME 308
Query: 297 DNVLVAKLKLLGDG----EGI--GRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLF 350
L+ K +G +GI G EAP+GE + G + P R K+R P + +L
Sbjct: 309 S--LIHHFKFYSEGINVPQGISYGGVEAPKGE-TGALLVSNGSNMPYRCKIRSPGYAHLQ 365
Query: 351 AIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
I + G+ +AD+V I ++D DR
Sbjct: 366 GINHVISGHMIADLVTVIGTLDIVFGEVDR 395
>gi|11466021 NADH dehydrogenase 49kD subunit [Nicotiana tabacum]
>gi|128838|sp|P12133|NUCC_TOBAC NADH-PLASTOQUINONE
OXIDOREDUCTASE 49 KD SUBUNIT, CHLOROPLAST (ORF 393)
>gi|82215|pir||A05216 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 393 - common tobacco chloroplast
>gi|1223674|emb|CAA77398.1| (Z00044) NADH dehydrogenase
49kD subunit [Nicotiana tabacum]
>gi|225262|prf||1211235CX ORF 393 [Nicotiana tabacum]
Length = 393
Score = 160 bits (401), Expect = 3e-38
Identities = 121/394 (30%), Positives = 184/394 (45%), Gaps = 36/394 (9%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
V GP HP + + I+TLDGE +V+ + LGY RG++ IA R +Q + R
Sbjct: 13 VNMGPQHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRTIIQYLPYVTRWDY 72
Query: 70 ICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLH 129
+ + + E++ I+VP+RA YIRVI+ EL RI SHLL LG DIG T
Sbjct: 73 LATMFTEAITINGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFF 132
Query: 130 LTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDV 189
+ RE + D+ EA TG R+ ++ IGGV D+ LD Y+ + + + +
Sbjct: 133 YIFRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLTGVAEYQKL 192
Query: 190 FLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMP 249
+ R+ II A+ G GP R SG+ D R + Y + +
Sbjct: 193 ITRNPIFLERVEGVGIIGGDEALNWGLSGPMLRASGIEWDLRKVDHYESYDEFDWQ---- 248
Query: 250 EDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKLKLLGD 309
+ GD R VRIGE+ +S+++I+ AL+ IP G P +N+ + + L D
Sbjct: 249 ---VQWQREGDSLARYLVRIGEMTESIKIIQQALEGIPGG-----PYENLEIRRFDRLKD 300
Query: 310 GEG-----------------------IGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTF 346
E R EAP+GEL ++ G + P RWK+R P F
Sbjct: 301 PEWNDFEYRFISKKPSPTFELSKQELYVRVEAPKGELGIFLIGDQS-VFPWRWKIRPPGF 359
Query: 347 PNLFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
NL + + ++ +LAD++ + SID + DR
Sbjct: 360 INLQILPQLVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|11497587 NADH dehydrogenase 49kD subunit [Spinacia oleracea]
>gi|7636168|emb|CAB88790.1| (AJ400848) NADH
dehydrogenase 49kD subunit [Spinacia oleracea]
Length = 393
Score = 160 bits (400), Expect = 3e-38
Identities = 122/394 (30%), Positives = 187/394 (46%), Gaps = 36/394 (9%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
V GP HP + + I+TLDGE +++ + +GY RG++ IA R +Q + R
Sbjct: 13 VNMGPHHPSMHGVLRLIVTLDGEDVIDCEPIVGYLHRGMEKIAENRTIIQYLPYVTRWDY 72
Query: 70 ICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLH 129
+ + V E++ I+VP+RA YIRVI+ EL RI SHLL LG DIG T
Sbjct: 73 LATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFF 132
Query: 130 LTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDV 189
RE + D+ EA TG R+ ++ IGGV D+ LD Y+ + + + +
Sbjct: 133 YILRERELIYDLFEAATGMRMMHNYFRIGGVAADLPYGWIDKCLDFCDYFLIGLTEYQKL 192
Query: 190 FLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMP 249
+ R+ N II + AI G GP R SG++ D R + Y +
Sbjct: 193 ITRNPIFLERVENVGIIGGEEAINWGLSGPMLRASGIQWDLRKVDHYECYDE------FD 246
Query: 250 EDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKLKL--- 306
+V +K GD R +RIGE+ +S+++I+ AL+ IP G P +N+ + +
Sbjct: 247 WEVQWQK-EGDSLARYLIRIGEMAESVKIIQQALEGIPGG-----PYENLEIRRFNRIKY 300
Query: 307 --------------------LGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTF 346
L E R EAP+GEL ++ G + P RWK+R P F
Sbjct: 301 PEWNDFEYRFISKKPSPAFELSKQELYVRVEAPKGELGIFLIGDQS-VFPWRWKIRPPGF 359
Query: 347 PNLFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
NL + + ++ +LAD++ + SID + DR
Sbjct: 360 INLQILPQLVKKMKLADIMTILGSIDIIMGEVDR 393
>pir||T34621 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain nuoD -
Streptomyces coelicolor >gi|5042274|emb|CAB44528.1|
(AL078618) nuoD, NADH dehydrogenase subunit
[Streptomyces coelicolor]
Length = 440
Score = 159 bits (399), Expect = 5e-38
Identities = 117/411 (28%), Positives = 193/411 (46%), Gaps = 47/411 (11%)
Query: 8 VKVPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERI 67
+ V GP HP + IL +DGE + +GY GI+ R + Q R+
Sbjct: 39 IVVNMGPQHPSTHGVLRLILEIDGETVTEARCGIGYLHTGIEKNLEYRTWTQGTTFVTRM 98
Query: 68 CGICSFSHNHTYVRAVEEMAGIE--VPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYD 125
+ F + Y VE++ GI+ +P+RA IRV++ EL R+ SHL+ + G ++G
Sbjct: 99 DYLTPFFNEAAYCLGVEKLLGIDDQIPDRATIIRVLLMELNRLSSHLVAIATGGMELGAT 158
Query: 126 TVLHLTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQ 185
T++ + RE ++D+ E ITG R+N++ + GG+ +D+ + + +K + +P+
Sbjct: 159 TIMIYGFRDRELILDIYELITGLRMNHAYIRPGGLAQDLPPGAVDQIREFVKKMNKNLPE 218
Query: 186 IEDVFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIK 245
+ + + +AR+++ + + +GA GP R +G+ D R ++ P G +
Sbjct: 219 YDKLATGNPIFKARMQDVGYLDLAGCMALGATGPVLRSTGLPHDLRKTQ-----PYCGYE 273
Query: 246 PIMPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKLK 305
+ T + D Y R +R+ E+ QSL ++E LD++ G + K A+L
Sbjct: 274 TYDFDVPTADTC--DSYGRFLIRLEEMRQSLRIVEQCLDRLQPGPVMVADKKIAWPAQLA 331
Query: 306 LLGDGEG-----------------------------------IGRYEAPRGEL-VHYVKG 329
L DG G E+P+GEL VH V
Sbjct: 332 LGPDGLGNSLDHIKKIMGTSMEALIHHFKLVTEGFRVPPAQVYTAVESPKGELGVHVV-- 389
Query: 330 KKGRDGPVRWKMREPTFPNLFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
G P R R+P+F NL A+A EG Q+ADV+VA+ASIDP + DR
Sbjct: 390 SDGGTRPFRVHFRDPSFTNLQAMAAMCEGGQVADVIVAVASIDPVMGGVDR 440
>gi|11466533 NADH dehydrogenase, subunit 7 [Reclinomonas americana]
>gi|6647647|sp|O21270|NUCM_RECAM NADH-UBIQUINONE
OXIDOREDUCTASE 49 KDA SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 7) >gi|7432630|pir||S78164 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 7 - Reclinomonas
americana (ATCC 50394) mitochondrion
>gi|2258363|gb|AAD11897.1| (AF007261) NADH
dehydrogenase, subunit 7 [Reclinomonas americana]
Length = 396
Score = 159 bits (399), Expect = 5e-38
Identities = 116/388 (29%), Positives = 186/388 (47%), Gaps = 27/388 (6%)
Query: 12 FGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGIC 71
FGP HP + +L L+GE + D +G RG + + +NY+Q + +R+ +
Sbjct: 17 FGPQHPAAHGVLRLVLELNGEVVNRADPHIGLLHRGTEKLIEYKNYLQALPYFDRLDYVS 76
Query: 72 SFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLT 131
+ H Y AVE++ G EVP+RA+YIRV+ E+ RI +HL+ + D+G T
Sbjct: 77 MMAQEHAYSLAVEKLLGCEVPKRAQYIRVLFCEITRILNHLMAVTTHALDVGAMTPFLWG 136
Query: 132 WLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDVFL 191
+ REK+M+ E ++G R++ + + GGV +D+ + K + + +IEDV
Sbjct: 137 FEEREKLMEFYERVSGARMHAAYIRPGGVSQDMPMGLSEDIYKFAKQFGSRIDEIEDVLS 196
Query: 192 HDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMPED 251
+ + RL + + + A++ G G RGSG+ D R ++ VY +L E
Sbjct: 197 SNRIWKQRLVDIGTVSAEEALDWGFSGVMLRGSGIAWDLRKTQPYDVYDEL-------EF 249
Query: 252 VTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKD-------------N 298
+GD YDR +R+ E+ QSL+LI L+++P G IK K
Sbjct: 250 DIPVGTKGDCYDRYLIRVEEMRQSLKLIMQCLNKMPTGVIKVDDKKISPPSRVDMKDSME 309
Query: 299 VLVAKLKLLGD------GEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFAI 352
L+ KL + GE EAP+GE Y+ G P R K++ P F +L +
Sbjct: 310 ALIHHFKLYTEGYSVPIGETYTAVEAPKGEFGVYLV-SDGSSKPYRCKIKAPGFSHLQGL 368
Query: 353 AKGLEGNQLADVVVAIASIDPCLSCTDR 380
+G+ +ADVV I + D DR
Sbjct: 369 NFMSKGHMIADVVTIIGTQDIVFGEVDR 396
>sp|P27724|NUCC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE 49 KD SUBUNIT
>gi|66201|pir||QXYBNH NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain ndhH - Synechocystis sp. (strain PCC
6803) >gi|48042|emb|CAA43057.1| (X60650) NDH-H
[Synechocystis PCC6803] >gi|1653022|dbj|BAA17939.1|
(D90910) NADH dehydrogenase subunit 7 [Synechocystis
sp.]
Length = 394
Score = 159 bits (398), Expect = 6e-38
Identities = 123/388 (31%), Positives = 188/388 (47%), Gaps = 29/388 (7%)
Query: 13 GPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIA-FRRNYVQLMYVAERICGIC 71
GP HP + + I+TLDGE +V+ + +GY RG++ IA R N + + YV+
Sbjct: 16 GPHHPSMHGVLRLIVTLDGEDVVDCEPVIGYLHRGMEKIAESRTNIMYVPYVSRWDYAAG 75
Query: 72 SFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLT 131
F+ T V A E++A IEVP+RA+YIRVI+ EL RI +HLL LG D+G T
Sbjct: 76 MFNEAIT-VNAPEKLADIEVPKRAQYIRVIMLELNRIANHLLWLGPFMADVGAQTPFFYI 134
Query: 132 WLAREKVMDVLEAITGNR-VNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDVF 190
+ RE + D+ EA +G R +N + +GGV D+ D Y+ + + E +
Sbjct: 135 FREREMIYDLWEAASGMRLINNNYFRVGGVAVDLPYGWNDKCEDFCDYFLPKVDEYEKLI 194
Query: 191 LHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMPE 250
++ R+ + ++ AI G GP RGSGV+ D R + Y +L
Sbjct: 195 TNNPIFRRRVEGVGTVTREEAINWGLSGPMLRGSGVKWDLRKVDHYECYDEL------DW 248
Query: 251 DVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKLKLLGD- 309
+V E A GD + R VRI E+ +S+++I AL +P G + + K D
Sbjct: 249 EVQYETA-GDCFARYLVRIREMRESVKIIRQALKAMPGGPYENLEAKRLQEGKKSEWNDF 307
Query: 310 -----------------GEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFAI 352
GE R E+ +GEL +++G P RWK+R F NL +
Sbjct: 308 QYQYIAKKVAPTFKIPAGEHYVRLESGKGELGIFIQGNDD-VFPWRWKIRSADFNNLQIL 366
Query: 353 AKGLEGNQLADVVVAIASIDPCLSCTDR 380
L+G ++AD++ + SID + DR
Sbjct: 367 PHILKGVKVADIMAILGSIDIIMGSVDR 394
>sp|P57254|NUCD_BUCAI NADH DEHYDROGENASE I CHAIN C/D (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN C/D) >gi|10038839|dbj|BAB12874.1| (AP001118) NADH
dehydrogenase I chain C / D [Buchnera sp. APS]
Length = 600
Score = 159 bits (398), Expect = 6e-38
Identities = 111/387 (28%), Positives = 192/387 (48%), Gaps = 26/387 (6%)
Query: 13 GPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGICS 72
GP HP + +L LDGE IV+ +GY+ RG + +A R+++ + +RI +
Sbjct: 221 GPNHPSAHGAFRIVLQLDGENIVDCVPDIGYHHRGAEKMAERQSWHSYIPYTDRIEYLGG 280
Query: 73 FSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLTW 132
+ YV AVE++A I VPE+AE IRV++ EL RI+SHLL + D+G T + +
Sbjct: 281 CVNELPYVLAVEKLANISVPEKAEVIRVMMSELFRINSHLLYISTFIQDVGCMTPVFFAF 340
Query: 133 LAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDVFLH 192
R+K+ D++EAITG R++ + IGGV D+ + LL + + + + + + L
Sbjct: 341 TDRQKIYDLIEAITGARMHPAWFRIGGVANDLPQGWNILLKEFLDWMPKRLKYYINTALK 400
Query: 193 DSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMPEDV 252
+S + R + A KK A++ G G R +G+ D R Y + + + +
Sbjct: 401 NSILIHRSKGIAEYNKKEALQWGVTGAGLRATGLNFDVRKWRPYSGYQNYTFEVPVGSGI 460
Query: 253 TGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIK------TFPKDNVLVAKLK- 305
+ D Y R +++ EI+QSL +++ L +P G K T P ++ ++
Sbjct: 461 S------DCYSRVMIKVEEIYQSLFILKQCLCNMPSGPFKSEDSLTTPPSKECVLQNIET 514
Query: 306 ------------LLGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFAIA 353
++ + E EA +G +Y+ G R ++R P+FP+L I
Sbjct: 515 MITHFLQVSWGPVIPENESFQMIEATKGINSYYLISDGGTMS-YRTRIRTPSFPHLQQIP 573
Query: 354 KGLEGNQLADVVVAIASIDPCLSCTDR 380
+ G+ ++D++V + SID +S DR
Sbjct: 574 SVIRGSLISDLIVYLGSIDFVMSDVDR 600
>sp|P95178|NUOD_MYCTU NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
D) >gi|7432633|pir||E70647 probable nuoD protein -
Mycobacterium tuberculosis (strain H37RV)
>gi|1781220|emb|CAB06291.1| (Z83867) nuoD [Mycobacterium
tuberculosis]
Length = 440
Score = 158 bits (395), Expect = 1e-37
Identities = 119/411 (28%), Positives = 194/411 (46%), Gaps = 47/411 (11%)
Query: 8 VKVPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERI 67
+ V GP HP + IL ++GE +V +GY GI+ R + Q + R+
Sbjct: 39 IVVNMGPQHPSTHGVLRLILEIEGETVVEARCGIGYLHTGIEKNLEYRYWTQGVTFVTRM 98
Query: 68 CGICSFSHNHTYVRAVEEMAGI--EVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYD 125
+ F + Y VE++ GI E+PER IRV++ EL RI SHL+ L G ++G
Sbjct: 99 DYLSPFFNETAYCLGVEKLLGITDEIPERVNVIRVLMMELNRISSHLVALATGGMELGAM 158
Query: 126 TVLHLTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQ 185
T + + + ARE V+ + E ITG R+N + + GGV +D+ + + +K R+ + +
Sbjct: 159 TPMFVGFRAREIVLTLFEKITGLRMNSAYIRPGGVAQDLPPNAATEIAEALKQLRQPLRE 218
Query: 186 IEDVFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIK 245
+ ++ ++ +AR + + + +G GP R +G+ D R SE P G +
Sbjct: 219 MGELLNENAIWKARTQGVGYLDLTGCMALGITGPILRSTGLPHDLRKSE-----PYCGYQ 273
Query: 246 PIMPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKLK 305
+ +T + D Y R +R+ E+W+S++++E LD++ G + A L+
Sbjct: 274 HYEFDVITDDSC--DAYGRYMIRVKEMWESMKIVEQCLDKLRPGPTMISDRKLAWPADLQ 331
Query: 306 LLGDG---------------------------EGIG--------RYEAPRGEL-VHYVKG 329
+ DG EGI E+PRGEL VH V
Sbjct: 332 VGPDGLGNSPKHIAKIMGSSMEALIHHFKLVTEGIRVPAGQVYVAVESPRGELGVHMV-- 389
Query: 330 KKGRDGPVRWKMREPTFPNLFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
G P R R+P+F NL ++A EG +AD++ A+ASIDP + DR
Sbjct: 390 SDGGTRPYRVHYRDPSFTNLQSVAAMCEGGMVADLIAAVASIDPVMGGVDR 440
>pir||D81992 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain D NMA0016
[imported] - Neisseria meningitidis (group A strain
Z2491) >gi|7378794|emb|CAB83336.1| (AL162752) NADH
dehydrogenase I chain D [Neisseria meningitidis Z2491]
Length = 418
Score = 156 bits (391), Expect = 4e-37
Identities = 123/417 (29%), Positives = 193/417 (45%), Gaps = 54/417 (12%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
+ FGP HP + IL LDGE+IV D +G RG + +A + Y+Q + +R+
Sbjct: 10 INFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPYMDRLDY 69
Query: 70 ICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLH 129
+ + Y AVE++AGI+VP RA+YIRV+ E+ RI +HL+ +G DIG T +
Sbjct: 70 VSMMVNEQAYCLAVEKLAGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAIL 129
Query: 130 LTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRD---------------------IEEKH 168
+ RE++MD+ EA++G R++ + GGV RD + E
Sbjct: 130 YAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYESSKFRNAKVLKQLNESR 189
Query: 169 RRLLLDMIKYYREIMPQ----IEDVFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGS 224
+LD I + E P+ +E + + + R ++ + A++ G G RGS
Sbjct: 190 EGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTGVMLRGS 249
Query: 225 GVRDDARWSEKLGVYPDLGIKPIMPEDVTGEKARGDVYDRAAVRIGEIWQSLELIE---- 280
GV D R ++ VY + +P V GD YDR R+ E+ QS+ +I+
Sbjct: 250 GVEWDVRKTQPYEVYDKMDFD--IPVGV-----NGDCYDRYLCRMEEMRQSVRIIKQCSE 302
Query: 281 -------------HALDQIPKGKIKTFPKDNVLVAKLKLLG----DGEGIGRYEAPRGEL 323
H + ++KT +D + KL G +GE E P+GE
Sbjct: 303 WLRVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEF 362
Query: 324 VHYVKGKKGRDGPVRWKMREPTFPNLFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
Y+ G + P R K+R P F +L + + +G+ LADVV I + D DR
Sbjct: 363 GVYII-SDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|7525091 NADH dehydrogenase 49KDa protein [Arabidopsis thaliana]
>gi|6685679|sp|P56753|NUCC_ARATH NADH-PLASTOQUINONE
OXIDOREDUCTASE 49 KDA SUBUNIT, CHLOROPLAST
>gi|5881752|dbj|BAA84443.1| (AP000423) NADH
dehydrogenase 49KDa protein [Arabidopsis thaliana]
Length = 393
Score = 156 bits (390), Expect = 5e-37
Identities = 121/389 (31%), Positives = 186/389 (47%), Gaps = 26/389 (6%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
V GP HP + + I+TLDGE +V+ + LGY RG++ IA R +Q + R
Sbjct: 13 VNMGPHHPSMHGVLRLIVTLDGEDVVDCEPILGYLHRGMEKIAENRAIIQYLPYVTRWDY 72
Query: 70 ICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLH 129
+ + V E++ I+VP+RA YIRVI+ EL RI SHLL LG DIG T
Sbjct: 73 LATMFTEAITVNGPEQLGNIQVPKRASYIRVIMLELSRIASHLLWLGPFMADIGAQTPFF 132
Query: 130 LTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDV 189
+ RE V D+ EA TG R+ ++ IGG+ D+ LD Y+ + + + +
Sbjct: 133 YIFREREFVYDLFEAATGMRMMHNFFRIGGIAADLPYGWIDKCLDFCDYFLTEVVEYQKL 192
Query: 190 FLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMP 249
+ R+ II + AI G GP R SG+ D R ++ Y +
Sbjct: 193 ITRNPIFLERVEGVGIIGGEEAINWGLSGPMLRASGIPWDLRKIDRYESYDE------FE 246
Query: 250 EDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKI----------KTFPKDNV 299
++ +K +GD R VR+ E+ +S+++I+ AL+ +P G K P+ N
Sbjct: 247 WEIQWQK-QGDSLARYLVRLSEMTESIKIIQQALEGLPGGPYENLESRGFDRKRNPEWND 305
Query: 300 LVAKLKL--------LGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFA 351
+ L E R EAP+GEL ++ G + P RWK+R P F NL
Sbjct: 306 FEYRFISKKPSPTFELSKQELYVRVEAPKGELGIFLIGDQS-GFPWRWKIRPPGFINLQI 364
Query: 352 IAKGLEGNQLADVVVAIASIDPCLSCTDR 380
+ + ++ +LAD++ + SID + DR
Sbjct: 365 LPELVKRMKLADIMTILGSIDIIMGEVDR 393
>gi|9695385 NADH dehydrogenase subunit 7 [Phytophthora infestans]
>gi|6692638|gb|AAF24781.1|U17009_13 (U17009) NADH
dehydrogenase subunit 7 [Phytophthora infestans]
Length = 392
Score = 155 bits (388), Expect = 9e-37
Identities = 110/391 (28%), Positives = 186/391 (47%), Gaps = 29/391 (7%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
+ FGP HP + IL L+GE + D +G RG + + +NY+Q + +R+
Sbjct: 11 INFGPQHPAAHGVLRLILELNGEVVQKADSHIGLLHRGTEKLIEYKNYLQALPYFDRLDY 70
Query: 70 ICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLH 129
+ H YV A+E++ ++P RA+YIRV+ E+ RI +HLL + D+G T
Sbjct: 71 VSMMCQEHAYVLAIEKLLNCDIPLRAQYIRVLFSEITRILNHLLAVCCHALDVGAMTPYF 130
Query: 130 LTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDV 189
+ REK+M+ E ++G R++ + GGV +D+ + + + + +IE++
Sbjct: 131 WGFEEREKLMEFYERVSGARMHAAYFRPGGVNQDLPKGLLNDIYIFCDQFNTRLDEIEEM 190
Query: 190 FLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIK-PIM 248
++ + RL + I+ K A+ +G G RGSG+ D R ++ +Y L P+
Sbjct: 191 LTNNRIWKQRLVDIGIVSAKDALNLGFSGVMLRGSGISWDLRKTQPYEIYDQLDFDIPV- 249
Query: 249 PEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKLKL-- 306
GD YDR +RI E+ QS+ +I L++IP G IK K ++++
Sbjct: 250 -------GTNGDCYDRYLIRIEEMRQSIRIILQILNKIPNGPIKLDDKKITNPNRIQIKN 302
Query: 307 -----------------LGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNL 349
+ GE EAP+GE Y+ G + P R K++ P F +L
Sbjct: 303 SMESLIHHFKYYSENISINSGETYTVIEAPKGEYGVYLV-SDGTNKPYRCKIKSPGFLHL 361
Query: 350 FAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
A+ + + +ADVV I ++D DR
Sbjct: 362 QALDFLAKNHMIADVVTIIGTLDVVFGEIDR 392
>pir||B81222 NADH dehydrogenase I, D chain NMB0244 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225466|gb|AAF40698.1| (AE002381) NADH dehydrogenase
I, D subunit [Neisseria meningitidis MC58]
Length = 418
Score = 155 bits (387), Expect = 1e-36
Identities = 122/417 (29%), Positives = 192/417 (45%), Gaps = 54/417 (12%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
+ FGP HP + IL LDGE+IV D +G RG + +A + Y+Q + +R+
Sbjct: 10 INFGPQHPAAHGVLRMILELDGEQIVRADPHIGLLHRGTEKLAETKTYLQALPYMDRLDY 69
Query: 70 ICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLH 129
+ + Y AVE++ GI+VP RA+YIRV+ E+ RI +HL+ +G DIG T +
Sbjct: 70 VSMMVNEQAYCLAVEKLVGIDVPIRAQYIRVMFAEVTRILNHLMGIGSHAFDIGAMTAIL 129
Query: 130 LTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRD---------------------IEEKH 168
+ RE++MD+ EA++G R++ + GGV RD + E
Sbjct: 130 YAFRDREELMDLYEAVSGARMHAAYFRPGGVYRDLPDFMPKYEGSKFRNAKVLKQLNESR 189
Query: 169 RRLLLDMIKYYREIMPQ----IEDVFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGS 224
+LD I + E P+ +E + + + R ++ + A++ G G RGS
Sbjct: 190 EGTMLDFIDAFCERFPKNIDTLETLLTDNRIWKQRTVGIGVVSPERAMQKGFTGVMLRGS 249
Query: 225 GVRDDARWSEKLGVYPDLGIKPIMPEDVTGEKARGDVYDRAAVRIGEIWQSLELIE---- 280
GV D R ++ VY + +P V GD YDR R+ E+ QS+ +I+
Sbjct: 250 GVEWDVRKTQPYEVYDKMDFD--IPVGV-----NGDCYDRYLCRMEEMRQSVRIIKQCSE 302
Query: 281 -------------HALDQIPKGKIKTFPKDNVLVAKLKLLG----DGEGIGRYEAPRGEL 323
H + ++KT +D + KL G +GE E P+GE
Sbjct: 303 WLRVNPGPVITTNHKFAPPKRTEMKTGMEDLIHHFKLFTEGMHVPEGETYTAVEHPKGEF 362
Query: 324 VHYVKGKKGRDGPVRWKMREPTFPNLFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
Y+ G + P R K+R P F +L + + +G+ LADVV I + D DR
Sbjct: 363 GVYII-SDGANKPYRLKIRAPGFAHLQGMDEMAKGHMLADVVAIIGTQDIVFGEVDR 418
>gi|11499418 F420H2:quinone oxidoreductase, 45 kDa subunit (nuoD) [Archaeoglobus
fulgidus] >gi|2648715|gb|AAB89420.1| (AE000976)
F420H2:quinone oxidoreductase, 45 kDa subunit (nuoD)
[Archaeoglobus fulgidus]
Length = 413
Score = 154 bits (385), Expect = 2e-36
Identities = 111/364 (30%), Positives = 183/364 (49%), Gaps = 23/364 (6%)
Query: 13 GPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGICS 72
GP HPG + I+ + G+ I V GY R ++ +A R Y+Q + + ER + +
Sbjct: 45 GPQHPGSGHM-RLIVRVRGDIIQEVIPDPGYVHRSMEKLAENRLYIQNIPLVERPAIMDA 103
Query: 73 FSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLTW 132
+ N YVRA+EE IEVPERA+++R ++ EL R+ +HL + +L +G+ T +
Sbjct: 104 PNFNLGYVRAIEEALDIEVPERAKFLRTMLAELGRVGTHLYDAAILAVFLGHTTGFMYPF 163
Query: 133 LAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDVFLH 192
RE + + L +TG R S + GGVRRD ++ + + DM + E +F++
Sbjct: 164 GLRELICEALVRLTGARFTSSFIIPGGVRRDADDATLKWIYDMTLAMERRLKSFERIFIN 223
Query: 193 DSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMPEDV 252
+ T+ ARL++ ++ K+ AI+ G VGP R SGV D R E Y DL + MP
Sbjct: 224 NPTVIARLQDVGVLSKEEAIKYGVVGPFLRASGVEYDVRKVEPYEAYDDLTWE--MP--- 278
Query: 253 TGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKLKLLGD-GE 311
GD Y R VR+ E+ QSL +I + ++P+G++ + + V + + G +
Sbjct: 279 --VSDAGDGYARFLVRVNEVGQSLSIIRQCIKEMPEGRVIS---EQVAENEKDIRGSFFD 333
Query: 312 GIGRYEAPRGELVHYVKGKKG-------RDG----PVRWKMREPTFPNLFAIAKGLEGNQ 360
+ P GE +G +G DG P R ++ P + L + ++G +
Sbjct: 334 SLSNIVLPSGEYTTLTEGARGTIIYSIISDGESNVPYRLRIVSPGWLYLRGFMESMKGER 393
Query: 361 LADV 364
LAD+
Sbjct: 394 LADL 397
>pir||E69478 coenzyme F420--quinone oxidoreductase (EC 1.6.5.-) 45K chain nuoD -
Archaeoglobus fulgidus
Length = 410
Score = 154 bits (385), Expect = 2e-36
Identities = 111/364 (30%), Positives = 183/364 (49%), Gaps = 23/364 (6%)
Query: 13 GPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGICS 72
GP HPG + I+ + G+ I V GY R ++ +A R Y+Q + + ER + +
Sbjct: 42 GPQHPGSGHM-RLIVRVRGDIIQEVIPDPGYVHRSMEKLAENRLYIQNIPLVERPAIMDA 100
Query: 73 FSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLTW 132
+ N YVRA+EE IEVPERA+++R ++ EL R+ +HL + +L +G+ T +
Sbjct: 101 PNFNLGYVRAIEEALDIEVPERAKFLRTMLAELGRVGTHLYDAAILAVFLGHTTGFMYPF 160
Query: 133 LAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDVFLH 192
RE + + L +TG R S + GGVRRD ++ + + DM + E +F++
Sbjct: 161 GLRELICEALVRLTGARFTSSFIIPGGVRRDADDATLKWIYDMTLAMERRLKSFERIFIN 220
Query: 193 DSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMPEDV 252
+ T+ ARL++ ++ K+ AI+ G VGP R SGV D R E Y DL + MP
Sbjct: 221 NPTVIARLQDVGVLSKEEAIKYGVVGPFLRASGVEYDVRKVEPYEAYDDLTWE--MP--- 275
Query: 253 TGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKLKLLGD-GE 311
GD Y R VR+ E+ QSL +I + ++P+G++ + + V + + G +
Sbjct: 276 --VSDAGDGYARFLVRVNEVGQSLSIIRQCIKEMPEGRVIS---EQVAENEKDIRGSFFD 330
Query: 312 GIGRYEAPRGELVHYVKGKKG-------RDG----PVRWKMREPTFPNLFAIAKGLEGNQ 360
+ P GE +G +G DG P R ++ P + L + ++G +
Sbjct: 331 SLSNIVLPSGEYTTLTEGARGTIIYSIISDGESNVPYRLRIVSPGWLYLRGFMESMKGER 390
Query: 361 LADV 364
LAD+
Sbjct: 391 LADL 394
>gi|11466472 NADH dehydrogenase subunit 7 [Chrysodidymus synuroideus]
>gi|7110469|gb|AAF36941.1|AF222718_15 (AF222718) NADH
dehydrogenase subunit 7 [Chrysodidymus synuroideus]
Length = 398
Score = 153 bits (384), Expect = 3e-36
Identities = 118/391 (30%), Positives = 185/391 (47%), Gaps = 29/391 (7%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
+ FGP HP + IL LDGE IVN D +G RG + + + Y+Q + +R+
Sbjct: 17 INFGPQHPAAHGVLRLILELDGEIIVNSDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDY 76
Query: 70 ICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLH 129
+ + HTY A+E++ I++P RA+ IRV+ E+ R+ +HL+ +G D+G +
Sbjct: 77 VSMMAQEHTYSLAIEKLMNIKIPRRAQIIRVLFCEITRLLNHLVAVGCHALDVGAMSPFM 136
Query: 130 LTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDV 189
+ REK+M+ E ++G R++ + GGV D+ + IK ++ + ++E++
Sbjct: 137 WGFEEREKLMEFYERVSGARMHAAYFRPGGVASDLPIGLLDDIFIFIKQFKIRLDEMEEM 196
Query: 190 FLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIK-PIM 248
+ + RL + I+ AI G G RGSGV D R S +Y +L P+
Sbjct: 197 LTSNRIWKERLVDIGIVSAFDAINWGFSGVLLRGSGVPWDLRKSNPYEIYNELNFSYPV- 255
Query: 249 PEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKT----------FPKDN 298
GD YDR +RI E+ QSL LI L+ I G IKT F N
Sbjct: 256 -------GTNGDCYDRYLIRIEEMRQSLSLISQCLNIINDGPIKTTNSKLTSPSLFELKN 308
Query: 299 VLVAKLK---------LLGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNL 349
+ + + + G GE EAP+GE Y+ + P R K++ P F +L
Sbjct: 309 SMESLIHHFKYYTEGLIPGFGETYTATEAPKGEFGVYLI-SNNTEKPYRCKIKAPGFGHL 367
Query: 350 FAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
A+ G+ +ADVV I + D DR
Sbjct: 368 QALNFMASGHMIADVVTIIGTQDIVFGEVDR 398
>sp|Q9PM99|NUOD_CAMJE NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
D) >gi|11254570|pir||F81252 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain D Cj1576c [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968993|emb|CAB73564.1| (AL139079) NADH
dehydrogenase I chain D [Campylobacter jejuni]
Length = 408
Score = 153 bits (382), Expect = 4e-36
Identities = 116/393 (29%), Positives = 184/393 (46%), Gaps = 31/393 (7%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
+ GP HP + IL LDGE++V +GY RG++ +A Y + + +R+
Sbjct: 25 INLGPQHPSAHGNLRLILELDGEQVVKARPCIGYMHRGMEKMAENMIYQEFIPTTDRMDY 84
Query: 70 ICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLH 129
I + ++N+ Y AVE++ G+E+P RA IR+I+ EL RI SHLL L DIG +V
Sbjct: 85 IAASANNYAYCAAVEKLCGLEIPRRAAVIRMILLELNRITSHLLWLATHALDIGAMSVFL 144
Query: 130 LTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDV 189
+ RE V+D++E G R+ +S M IGGV D+ E + +L + + ED+
Sbjct: 145 YCFREREYVLDLIEKYCGARLTHSSMRIGGVMLDLPENYLEEMLAFCDKFPNDLKDYEDL 204
Query: 190 FLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMP 249
+ R N ++ K+ A+ G G RGSG++ D R E +Y ++
Sbjct: 205 LDDNRIWRLRTENVGVVTKEQALNWGCTGVMLRGSGIKYDIRKEEPYLLYNEV------- 257
Query: 250 EDVTGEKARGDVYDRAAVRIGEIWQSLELIEHAL----DQIPKGKIKTFP------KDNV 299
E +GD Y R V + E +SL+++ D P+ + T P K+ +
Sbjct: 258 EFGVPYATQGDSYARYKVYMQEFRESLKILRQCAMLYKDTSPE-ILATHPEYVSASKEQI 316
Query: 300 LVAKLKLL------------GDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFP 347
L L+ GE E+P+GEL ++ G P R K R P++
Sbjct: 317 LTQNYSLMQHFVLITQGLKPPKGEVYVPTESPKGELGFFIH-SDGTGRPYRLKARTPSYW 375
Query: 348 NLFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
+ + L G LADVV + +++ L DR
Sbjct: 376 HCAFFEEMLVGTYLADVVAIMGNVNIVLGEIDR 408
>gi|11467085 NADH dehydrogenase, subunit 7 [Acanthamoeba castellanii]
>gi|3914189|sp|Q37384|NUCM_ACACA NADH-UBIQUINONE
OXIDOREDUCTASE 49 KDA SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 7) >gi|1078746|pir||S53862 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 7 - Acanthamoeba
castellanii mitochondrion >gi|562066|gb|AAD11854.1|
(U12386) NADH dehydrogenase, subunit 7 [Acanthamoeba
castellanii]
Length = 401
Score = 152 bits (380), Expect = 8e-36
Identities = 114/389 (29%), Positives = 182/389 (46%), Gaps = 29/389 (7%)
Query: 12 FGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGIC 71
FGP HP + IL LDGE + D +G RG + + + Y+Q + +R+ +
Sbjct: 22 FGPQHPAAHGVLRLILELDGELVRKADPHIGLLHRGTEKLIEYKTYIQALPYFDRLDYVS 81
Query: 72 SFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLT 131
S H Y A+E++ VP RA+YIRVI EL RI +H+L + D+G T
Sbjct: 82 MMSQEHAYSLAIEKLLNCNVPIRAQYIRVIYSELTRILNHILAVTTHAMDVGALTPFLWL 141
Query: 132 WLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDVFL 191
+ REK+M+ E ++G R++ + + GGV +D ++ ++ + + ++E++
Sbjct: 142 FEEREKLMEFYERVSGARMHAAYIRPGGVAQDFPLGLWNDIMQFVEQFFWRLVEVEELLN 201
Query: 192 HDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIK-PIMPE 250
+ + RL + I+ + A+ G G RGSG+ D R + VY L PI
Sbjct: 202 GNRIWKQRLVDVGIVTAEEALSHGFSGVMLRGSGIAWDLRKNNPYEVYNKLNFNIPI--- 258
Query: 251 DVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKD------------- 297
GD YDR +R+ E+++SL +I+ L +P G IK K
Sbjct: 259 -----GKNGDCYDRYLIRVYEMYESLNIIKQCLTAMPAGLIKVNDKKITPPERTDMKYSM 313
Query: 298 NVLVAKLKLLGDG------EGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFA 351
L+ KL +G E EAP+GE YV G + P R K++ P F +L +
Sbjct: 314 ESLIHHFKLYSEGFNVPENETYACVEAPKGEFGVYVV-SDGSNKPYRCKIKAPGFLHLQS 372
Query: 352 IAKGLEGNQLADVVVAIASIDPCLSCTDR 380
+ +G+ +ADVV I + D DR
Sbjct: 373 LNSMSKGHMIADVVTIIGTQDIVFGEIDR 401
>sp|Q9TC96|NUCM_NEPOL NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 7) >gi|6066183|gb|AAF03201.1|AF110138_33
(AF110138) NADH dehydrogenase subunit 7 [Nephroselmis
olivacea]
Length = 398
Score = 151 bits (378), Expect = 1e-35
Identities = 116/388 (29%), Positives = 181/388 (45%), Gaps = 27/388 (6%)
Query: 12 FGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGIC 71
FGP HP + +L L+GE + D +G RG + + + Y Q + +R+ +
Sbjct: 19 FGPQHPAAHGVLRLVLELNGEVVARADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVS 78
Query: 72 SFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLT 131
H Y AVE++ EVPERA+YIRV+ E+ RI +HLL L D+G T
Sbjct: 79 MMCQEHAYSLAVEKLLHCEVPERAQYIRVLFSEITRILNHLLALTTHAMDVGALTPFLWA 138
Query: 132 WLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDVFL 191
+ REK+++ E ++G+R++ + + GGV D+ + + + + ++E++
Sbjct: 139 FEEREKLIEFYERVSGSRMHAAYIRPGGVACDLPANLCEDIYLFCQQFASRIDEMEEMLT 198
Query: 192 HDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMPED 251
++ + RL + I+ + A G G RGSGV D R ++ VY M D
Sbjct: 199 NNRIWKQRLVDIGIVTAENAFAWGFSGVLLRGSGVAWDLRKTQPYDVYNR------MIFD 252
Query: 252 VTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKD-------------N 298
V +GD YDR R+ E+ QS+ +I L+Q+PKG IK K
Sbjct: 253 VP-VGTQGDCYDRYLCRVEEMRQSIHIIMQCLNQLPKGMIKADDKKITPPSRSQMKQSME 311
Query: 299 VLVAKLKLLGDG------EGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFAI 352
L+ KL +G E EAP+GE Y+ G + P R K+R P F +L +
Sbjct: 312 SLIHHFKLFTEGYTVPNSETYTSVEAPKGEFGVYLV-SNGTNRPYRCKIRAPGFLHLQGL 370
Query: 353 AKGLEGNQLADVVVAIASIDPCLSCTDR 380
+ + LADVV I + D DR
Sbjct: 371 DMMSKNHMLADVVTIIGTQDIVFGEVDR 398
>pir||G64677 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO4 -
Helicobacter pylori (strain 26695)
>gi|2314430|gb|AAD08309.1| (AE000631) NADH-ubiquinone
oxidoreductase, NQO4 subunit (NQO4){Triticum aestivum}
[Helicobacter pylori 26695]
Length = 409
Score = 150 bits (376), Expect = 2e-35
Identities = 110/390 (28%), Positives = 179/390 (45%), Gaps = 29/390 (7%)
Query: 12 FGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGIC 71
FGP HP + IL L+GE+I+ ++GY RG + + Y + M +R+
Sbjct: 28 FGPQHPSSHGQLRLILELEGEKIIKATPEIGYLHRGCEKLGENMTYNEYMPTTDRLDYTS 87
Query: 72 SFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLT 131
S S+N+ Y AVE + +E+P RA+ IR I+ EL R+ SH+ + V D+G +V
Sbjct: 88 STSNNYAYAYAVETLLNLEIPRRAQVIRTILLELNRMISHIFFISVHALDVGAMSVFLYA 147
Query: 132 WLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDVFL 191
+ RE +D++E G R+ ++ + IGGV D+ L + RE I+ +
Sbjct: 148 FKTREYGLDLMEDYCGARLTHNAIRIGGVPLDLPPNWLEGLKKFLGEMRECKKLIQGLLD 207
Query: 192 HDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMPED 251
+ RL N ++ +K+A G G RG+G+ D R E +Y +L +
Sbjct: 208 KNRIWRMRLENVGVVTQKMAQSWGMSGIMLRGTGIAYDIRKEEPYELYKELDFDVPVGN- 266
Query: 252 VTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIK---------TFPKDNVLVA 302
GD YDR + + EI +S+ +IE + K + PK++++
Sbjct: 267 ------YGDSYDRYCLYMLEIDESVRIIEQLIPMYAKTDTPIMAQNPHYISAPKEDIMTQ 320
Query: 303 KLKLLGD------------GEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLF 350
L+ GE E+P+GEL ++ +G P R K+R P+F ++
Sbjct: 321 NYALMQHFVLVAQGMRPPVGEVYAPTESPKGELGFFIH-SEGEPYPHRLKIRAPSFYHIG 379
Query: 351 AIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
A++ L G LAD V I S + DR
Sbjct: 380 ALSDILVGQYLADAVTVIGSTNAVFGEVDR 409
>pir||E71838 nadh oxidoreductase I - Helicobacter pylori (strain J99)
>gi|4155794|gb|AAD06770.1| (AE001545) NADH
oxidoreductase I [Helicobacter pylori J99]
Length = 409
Score = 150 bits (375), Expect = 3e-35
Identities = 110/390 (28%), Positives = 178/390 (45%), Gaps = 29/390 (7%)
Query: 12 FGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGIC 71
FGP HP + IL L+GE+I+ ++GY RG + + Y + M +R+
Sbjct: 28 FGPQHPSSHGQLRLILELEGEKIIKATPEIGYLHRGCEKLGENMTYNEYMPTTDRLDYTS 87
Query: 72 SFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLT 131
S S+N+ Y AVE + +E+P RA+ IR I+ EL R+ SH+ + V D+G +V
Sbjct: 88 STSNNYAYAYAVETLLNLEIPRRAQVIRTILLELNRMISHIFFISVHALDVGAMSVFLYA 147
Query: 132 WLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDVFL 191
+ RE +D++E G R+ ++ + IGGV D+ L + RE I+ +
Sbjct: 148 FKTREYGLDLMEDYCGARLTHNAIRIGGVPLDLPPNWLEGLKKFLGEMRECKKLIQGLLD 207
Query: 192 HDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMPED 251
+ RL N ++ K+A G G RG+G+ D R E +Y +L +
Sbjct: 208 KNRIWRMRLENVGVVTPKMAQSWGMSGIMLRGTGIAYDIRKEEPYELYKELDFDVPVGN- 266
Query: 252 VTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIK---------TFPKDNVLVA 302
GD YDR + + EI +S+ +IE + K + PK++++
Sbjct: 267 ------YGDSYDRYCLYMLEIDESIRIIEQLIPMYAKTDTPIMAQNPHYISAPKEDIMTQ 320
Query: 303 KLKLLGD------------GEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLF 350
L+ GE E+P+GEL ++ +G P R K+R P+F ++
Sbjct: 321 NYALMQHFVLVAQGMRPPVGEVYAPTESPKGELGFFIH-SEGEPYPHRLKIRAPSFYHIG 379
Query: 351 AIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
A++ L G LAD V I S + DR
Sbjct: 380 ALSDILVGQYLADAVTVIGSTNAVFGEVDR 409
>gb|AAF56465.1| (AE003751) CG11913 gene product [Drosophila melanogaster]
Length = 502
Score = 150 bits (375), Expect = 3e-35
Identities = 108/392 (27%), Positives = 179/392 (45%), Gaps = 31/392 (7%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
+ FGP HP + IL LD E ++N D +G RG + + + Y Q + +R+
Sbjct: 121 INFGPAHPAAHGVLRMILELDNETVLNADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDY 180
Query: 70 ICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLH 129
+ ++ Y AVE++ +EVP RA+YIR + E+ R+ +H + +G D G T L
Sbjct: 181 VSCMANELAYCLAVEKLLNVEVPRRAKYIRTMFSEIMRLTNHTMAIGSSVLDCGAITPLF 240
Query: 130 LTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDV 189
+ REK+ + E +G R++ + + GGV DI L I + E + ++EDV
Sbjct: 241 WLFEEREKLYEFSERASGARLHAAYIRPGGVASDIPLGFLHDLYQFINQFNERLDEVEDV 300
Query: 190 FLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMP 249
+ R +I A+ G GP R +GV+ D R + Y ++ ++
Sbjct: 301 VTDNRIWRMRNIGIGVISAHDALNYGCTGPVLRATGVKWDLRKQQPYDAYDEMDFDVVV- 359
Query: 250 EDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKLKLLGD 309
+ GD YDR VR+ E+ +S+ +I+ +D +P G+IK D++ + +
Sbjct: 360 ------GSNGDCYDRYLVRMREMRESVNIIKQCIDAMPPGEIKV---DDLKICPPQRSKM 410
Query: 310 GEGI-----------GRYEAPRGELVHYVKGKKGRDG----------PVRWKMREPTFPN 348
EG+ + P G+ V+ KG G P R K+R ++ +
Sbjct: 411 KEGMEDLIHHFKHFSQGFRVPPGQTYCAVESPKGEFGAFLISDGSSRPYRCKIRPASYAH 470
Query: 349 LFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
L +AK + LADVV I S+D DR
Sbjct: 471 LALMAKMAPAHLLADVVAIIGSLDIVFGEIDR 502
>gi|11465869 NADH dehydrogenase subunit 7 [Ochromonas danica]
>gi|10505202|gb|AAG18384.1|AF287134_9 (AF287134) NADH
dehydrogenase subunit 7 [Ochromonas danica]
Length = 398
Score = 149 bits (372), Expect = 7e-35
Identities = 111/390 (28%), Positives = 182/390 (46%), Gaps = 27/390 (6%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
+ FGP HP + IL LDGE + D +G RG + + + Y+Q + +R+
Sbjct: 17 INFGPQHPAAHGVLRLILELDGEVVEKADPHIGLLHRGTEKLIEFKTYLQALPYFDRLDY 76
Query: 70 ICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLH 129
+ + HTY A+E++ I +PERA+ IR I E+ R+ +HLL +G D+G T
Sbjct: 77 VSMMAQEHTYSLAIEKIGNIVIPERAKIIRTIFAEITRLLNHLLAVGCHAMDVGAMTPFL 136
Query: 130 LTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDV 189
+ REK+M+ E ++G R++ + + GGV DI L + + + ++E++
Sbjct: 137 WAFEEREKLMEFYERVSGARMHAAYIRPGGVSMDIPLGLLDDLYIFVNQFNYRLDEMEEM 196
Query: 190 FLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMP 249
+ RL + ++ AIE G G RGSG+ D R ++ +Y ++ +
Sbjct: 197 LTKSRIWKERLVDIGVVSAAKAIEWGFSGVMLRGSGISWDLRKNQPYEIYSEIDFSIPVG 256
Query: 250 EDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKT----------FPKDNV 299
GD YDR VR+ E+ QS+ +I L +I +G IK+ N
Sbjct: 257 NS-------GDCYDRYLVRVEEMRQSIYIISKCLTKIKEGPIKSNNYKISPPSRLEMKNS 309
Query: 300 LVAKLK---------LLGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLF 350
+ A + +L GE EAP+GE Y+ + P R K++ P F +L
Sbjct: 310 MEAVIHHFKYFSEGFVLPCGETYTSTEAPKGEFGVYLV-SNNTEKPYRCKIKAPGFGHLQ 368
Query: 351 AIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
A+ +G+ +ADVV I + D DR
Sbjct: 369 ALNDMSKGHLIADVVTIIGTQDIVFGEIDR 398
>gb|AAG19139.1| (AE005011) NADH dehydrogenase/oxidoreductase; NdhG5 [Halobacterium
sp. NRC-1]
Length = 562
Score = 148 bits (371), Expect = 9e-35
Identities = 117/380 (30%), Positives = 178/380 (46%), Gaps = 25/380 (6%)
Query: 13 GPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYV-QLMYVAERI-CGI 70
GP HP LDGE++ +V+ +GY R + +A + Y Q+M +R G
Sbjct: 196 GPHHPATHGVLHVETVLDGEQVADVNPDIGYLHRCEEQMAQKGTYRHQIMPYPDRWDYGP 255
Query: 71 CSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDI--GYDTVL 128
+ Y R E++A I+VPE A+ +R + GEL RI H+L LG DI + +
Sbjct: 256 GGILNEWAYARTAEDLADIDVPEYAQILRTMGGELCRIACHMLALGTFCLDIYGDFTAIF 315
Query: 129 HLTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRL---LLDMIKYYREIMPQ 185
RE V ++LE +TG R+ + + +GGV DI E + D + E + +
Sbjct: 316 MYAMRDREVVQNILEDLTGQRMMLNYLRLGGVVWDIPEPRAEFFESVRDFLDELPERLDE 375
Query: 186 IEDVFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIK 245
D+ + +AR N ++ + A + G GP RGSGV D R + G YP+L
Sbjct: 376 YSDLITSNEIFQARTVNTGVLDYETAKDYGVTGPVARGSGVDYDVRRDDPYGYYPEL--- 432
Query: 246 PIMPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDN-----VL 300
DV E GD Y R VR+ E+ QS +IE +D ++ +P+D +
Sbjct: 433 ---DWDVVTEDG-GDNYSRLLVRMEEVEQSARIIEQCVD-----LLEGWPEDERDIQANV 483
Query: 301 VAKLKLLGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFAIAKGLEGNQ 360
LK E E +GEL Y++ G + P R+K+R P F NL A+ + G
Sbjct: 484 PRTLKPEAGTETYRTVEGAKGELGVYIRA-DGTEKPGRFKIRSPCFSNLSALKEMSTGEY 542
Query: 361 LADVVVAIASIDPCLSCTDR 380
+ D+V + S+D L DR
Sbjct: 543 IPDLVATLGSLDVILGEVDR 562
>pir||F82821 NADH-ubiquinone oxidoreductase, NQO4 subunit XF0308 [imported] -
Xylella fastidiosa (strain 9a5c)
>gi|9105131|gb|AAF83119.1|AE003884_4 (AE003884)
NADH-ubiquinone oxidoreductase, NQO4 subunit [Xylella
fastidiosa]
Length = 435
Score = 148 bits (370), Expect = 1e-34
Identities = 123/415 (29%), Positives = 192/415 (45%), Gaps = 54/415 (13%)
Query: 12 FGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGIC 71
FGP HP + IL +DGE +V D +G RG + +A + + Q + +R+ +
Sbjct: 29 FGPQHPAAHGVLRLILEMDGETVVRADPHIGLLHRGTEKLAESKPFNQSIGYMDRLDYVS 88
Query: 72 SFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLT 131
+ H YVRA+E + GI+ PERA+YIR + E+ RI +HL+ LG D+G V+
Sbjct: 89 MMCNEHAYVRAIETLIGIQAPERAQYIRTMFDEITRILNHLMWLGSNALDLGAMAVMLYA 148
Query: 132 WLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEE---KHRR------------------ 170
+ RE++MDV EAI+G R++ + GGV RD+ + K+++
Sbjct: 149 FREREELMDVYEAISGARMHAAYYRPGGVYRDLPDTMPKYKQSRWHKGKALKRLNAAREG 208
Query: 171 LLLDMIKYYREIMPQIEDVF---LHDSTI-EARLRNCAIIPKKLAIEMGAVGPTGRGSGV 226
+LD ++++ + PQ D + L D+ I + R +I +A G G RGSGV
Sbjct: 209 SMLDFLEHFADTFPQRIDEYETLLTDNRIWKQRTVGVGVIEPDVAKAWGMTGVMLRGSGV 268
Query: 227 RDDARWSEKLGVYPDLGIKPIMPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALD-- 284
D R + Y + +P GD YDR R+ E+ +S +I+ +
Sbjct: 269 AWDLRKKQPYAKYDAVDFD--IPLGTC-----GDCYDRYLCRVAEMRESNRIIKQCVQWL 321
Query: 285 -----QIPKGKIKTFP------KDNV--LVAKLKLLGD------GEGIGRYEAPRGELVH 325
Q+ K P KD++ L+ KL + GE EAP+GE
Sbjct: 322 KVNPGQVMVENFKVAPPKRESMKDDMEALIHHFKLFSEGYCVPAGETYSAVEAPKGEFGC 381
Query: 326 YVKGKKGRDGPVRWKMREPTFPNLFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
Y+ G + P R +R P F +L ++ + G LADVV I + D DR
Sbjct: 382 YLI-SDGANKPFRVHLRAPGFAHLSSMDAVVRGYMLADVVAMIGTYDLVFGEVDR 435
>dbj|BAB18862.1| (AB035479) NADH dehydrogenase [Physcomitrella patens]
Length = 393
Score = 148 bits (369), Expect = 1e-34
Identities = 113/388 (29%), Positives = 182/388 (46%), Gaps = 27/388 (6%)
Query: 12 FGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGIC 71
FGP HP + +L ++GE + + +G RG + + + Y+Q + +R+ +
Sbjct: 14 FGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVS 73
Query: 72 SFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLT 131
+ H Y AVE++ EVP RA+YIRV+ E+ RI +HLL L D+G T
Sbjct: 74 MMAQEHAYSLAVEKLCNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWA 133
Query: 132 WLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDVFL 191
+ REK+++ E ++G R++ S + GGV +D+ + + + + +IE++
Sbjct: 134 FEEREKLLEFYERVSGARMHASYIRPGGVAQDMPLGLSEDIFLFTQQFASRIDEIEEMLT 193
Query: 192 HDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMPED 251
++ + RL + + + A++ G G RGSGV D R S VY L D
Sbjct: 194 NNRIWKQRLVDIGTVTAQQALDWGFSGVMLRGSGVCWDLRKSAPYDVYNQLSF------D 247
Query: 252 VTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKD-------------N 298
V RGD YDR +RI E+ QS+ +I L+Q+P G IK +
Sbjct: 248 VP-VGTRGDCYDRYCIRIEEMRQSIRIIMQCLNQMPSGMIKADDRKLCPPSRSQMKQSME 306
Query: 299 VLVAKLKLLGDGEGI------GRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFAI 352
L+ KL +G + EAP+GE ++ G + P R K+R P F +L +
Sbjct: 307 SLIHHFKLYTEGFSVPASSTYTAVEAPKGEFGVFLV-SNGTNRPYRCKIRAPGFAHLQGL 365
Query: 353 AKGLEGNQLADVVVAIASIDPCLSCTDR 380
+ + LADVV I + D DR
Sbjct: 366 DFMSKHHMLADVVTIIGTQDIVFGEVDR 393
>gb|AAF59336.1| (AE003843) CG1970 gene product [Drosophila melanogaster]
Length = 452
Score = 148 bits (369), Expect = 1e-34
Identities = 111/389 (28%), Positives = 177/389 (44%), Gaps = 45/389 (11%)
Query: 12 FGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGIC 71
FGP HP + +L LDGE ++ D +G RG + + + Y Q + +R+ +
Sbjct: 89 FGPQHPAAHGVLRLVLELDGETVMRADPHIGLLHRGTEKLIEYKTYTQALPYFDRLDYVS 148
Query: 72 SFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLT 131
+ Y AVE++ I+VP RA+YIR + E+ RI +H++ +G D+G T
Sbjct: 149 MMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRILNHIMAVGTHALDVGALTPFFWL 208
Query: 132 WLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDVFL 191
+ REK+M+ E ++G R++ + + GGV + E + ++EDV
Sbjct: 209 FEEREKMMEFYERVSGARMHAAYIRPGGV----------------SLFAERLDEVEDVLT 252
Query: 192 HDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIK-PIMPE 250
+ R + I+ + A+ G G RGSG++ D R + Y + PI
Sbjct: 253 TNRIWVQRTEDIGIVTAEEALNYGFSGVMLRGSGIKWDLRKQQPYDAYNLVNFDVPI--- 309
Query: 251 DVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKD------------- 297
+GD YDR R+ E+ QSL +I+ L+Q+P G+IKT
Sbjct: 310 -----GTKGDCYDRYLCRVEEMRQSLRIIDQCLNQMPAGEIKTDDAKVAPPSRSEMKTSM 364
Query: 298 NVLVAKLKLLGDGEGI------GRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFA 351
L+ KL G + EAP+GE Y+ G P R K++ P F +L A
Sbjct: 365 EALIHHFKLFTQGYQVPPGATYTAIEAPKGEFGVYLI-SDGSSRPYRCKIKAPGFAHLAA 423
Query: 352 IAKGLEGNQLADVVVAIASIDPCLSCTDR 380
+ K + + LADVV I ++D DR
Sbjct: 424 LEKIGKQHMLADVVAIIGTLDVVFGEIDR 452
>gi|11466595 NADH dehydrogenase subunit 7 [Rhodomonas salina]
>gi|10444182|gb|AAG17756.1|AF288090_32 (AF288090) NADH
dehydrogenase subunit 7 [Rhodomonas salina]
Length = 399
Score = 146 bits (366), Expect = 3e-34
Identities = 114/397 (28%), Positives = 187/397 (46%), Gaps = 41/397 (10%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
V FGP HP + IL L+GE I+ D +G RG + + + Y+Q + +R+
Sbjct: 18 VNFGPQHPAAHGVLRLILELNGETIIKADPHIGLLHRGTEKLIENKTYIQGLPYFDRLDY 77
Query: 70 ICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLH 129
+ + H + A+E + IEVP RA++IRVI E+ RI +HLL + D+G T +
Sbjct: 78 VSMMINEHAFCLAIERLLNIEVPLRAQFIRVIFSEITRILNHLLAICCHAMDVGALTPIL 137
Query: 130 LTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREI---MPQI 186
+ REK+M+ E ++G R++ + GGV +D+ L D+ K+ + + ++
Sbjct: 138 WGFEEREKLMEFYERVSGARMHAAYFRPGGVSQDLP---LGLCADIFKFCEQFSSRIDEL 194
Query: 187 EDVFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKP 246
E++ + + RL + +I + A+ +G GP R +G D R + +Y L
Sbjct: 195 EELLTENRIWKQRLVDVGVITFEQALNLGLTGPLLRSTGFSWDLRRTHPYEIYDKLDF-- 252
Query: 247 IMPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKG-----KIKTFPKDNV-- 299
D+ K GD YDR +RI E+ QSL +I L+ +P+G +K P V
Sbjct: 253 ----DIPIGK-NGDSYDRYCIRIEEMRQSLSIIVQCLNNMPQGSFKVNNMKISPPSRVDM 307
Query: 300 ------LVAKLKLLGDGEGIGRYEAPRGELVHYVKGKKGRDG----------PVRWKMRE 343
L+ K +G + P+G + V+ KG G P R K++
Sbjct: 308 KRSMESLIHHFKYFSEG-----FTIPKGIVYAAVEHPKGEFGVSLVTDGTNKPYRCKIKA 362
Query: 344 PTFPNLFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
P F +L A+ G+ LAD+V I ++D DR
Sbjct: 363 PGFIHLQALDFLSRGHLLADLVTIIGTLDIVFGEIDR 399
>pir||T34389 hypothetical protein T26A5.3 - Caenorhabditis elegans
>gi|470339|gb|AAC77506.1| (U00043) similar to
NADH-ubiquinone oxidoreductase [Caenorhabditis elegans]
Length = 474
Score = 146 bits (365), Expect = 4e-34
Identities = 106/389 (27%), Positives = 182/389 (46%), Gaps = 29/389 (7%)
Query: 12 FGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGIC 71
FGP HP + +L L+GE I+ +G R + + + Y Q + +R+ +
Sbjct: 95 FGPQHPAAHGVLRLVLKLEGEVIIKAIPHIGLLHRATEKLIEHKTYTQALPYFDRLDYVS 154
Query: 72 SFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLT 131
+ + A+E++ GI+VP RA+YIR++ GEL RI +H++ + D+G T
Sbjct: 155 MMCNEQAFSLAIEKLLGIDVPPRAKYIRILFGELTRIQNHIMGITTHALDVGAMTPFFWM 214
Query: 132 WLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDVFL 191
+ REK+ + E ++G R++ + + GGV D+ + D + + ++ED+
Sbjct: 215 FEEREKLFEFSERVSGARMHANYVRPGGVAWDLPVGLMDDIYDWAVKFPARIDELEDMLT 274
Query: 192 HDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIK-PIMPE 250
+ +AR + ++ A+ G G RGSG++ D R +E Y D+ PI
Sbjct: 275 ENRIWKARTVDIGLVSASDALNWGFSGVMVRGSGIKQDVRKTEPYDAYADMEFDVPI--- 331
Query: 251 DVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFP-----------KDNV 299
+GD YDR R+ E+ QSL ++ L+++P G+IK+ K+N+
Sbjct: 332 -----GTKGDCYDRYLCRVEEMRQSLNIVHQCLNKMPTGEIKSDDHKVVPPKRAEMKENM 386
Query: 300 --LVAKLKLLGDGEGIG------RYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFA 351
L+ K +G + EAP+GE Y+ G P R +R P F +L A
Sbjct: 387 ESLIHHFKFFTEGFQVPPGATYVPIEAPKGEFGVYLVA-DGTGKPYRCFIRAPGFAHLAA 445
Query: 352 IAKGLEGNQLADVVVAIASIDPCLSCTDR 380
I + +AD+V I ++D DR
Sbjct: 446 IHDVCYMSLIADIVAVIGTMDIVFGEVDR 474
>pir||S38313 NADH dehydrogenase I chain nuoD - Escherichia coli
Length = 406
Score = 146 bits (365), Expect = 4e-34
Identities = 108/387 (27%), Positives = 189/387 (47%), Gaps = 27/387 (6%)
Query: 13 GPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGICS 72
GP H + + +L LDGE IV+ +GY+ RG + + R+++ + +RI +
Sbjct: 28 GPNHRRADGAFRTVLQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIEYLGG 87
Query: 73 FSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLTW 132
+ YV AVE++AGI VP+R IRV++ EL RI+SHLL + D+G T + +
Sbjct: 88 CVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMTPVFFAF 147
Query: 133 LAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDVFLH 192
R+K+ D++EAITG R++ + IGGVRR + + + + + + E L
Sbjct: 148 TDRQKIYDLVEAITGFRMHPAWFRIGGVRRP-AARLGSPAAEFLDWMPKRLASYEKAALQ 206
Query: 193 DSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMPEDV 252
++ ++ R + A + +K A+E G G R +G+ D R + Y + + + V
Sbjct: 207 NTILKGRSQGVAPMARKEALEWGTTGAGLRATGIDFDVRKARPYSGYENFDFEIPVGGGV 266
Query: 253 TGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTF-------PKDNVL----- 300
+ D Y R +++ E+ QSL ++E L+ +P+G PK+ L
Sbjct: 267 S------DCYTRVMLKVEELGQSLRILEQCLNNMPEGPFNRDHPLTTPPPKERTLQHIET 320
Query: 301 -------VAKLKLLGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFAIA 353
V+ ++ E EA +G +Y+ G R ++R P+F +L I
Sbjct: 321 LITHFLQVSWGPVMPANESFQMIEATKGINSYYLT-SDGSTMSYRTRVRTPSFAHLQQIP 379
Query: 354 KGLEGNQLADVVVAIASIDPCLSCTDR 380
+ G+ ++D++V + SID +S DR
Sbjct: 380 AAIRGSLVSDLIVYLGSIDFVMSDVDR 406
>sp|Q93873|NUCM_CAEEL PROBABLE NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNIT PRECURSOR
(COMPLEX I-49KD) (CI-49KD) >gi|7505618|pir||T23532
hypothetical protein K09A9.5 - Caenorhabditis elegans
>gi|3878424|emb|CAB01886.1| (Z79601) predicted using
Genefinder~Similarity to Bovine NADH-ubiquinone
oxidoreductase 49 KD subunit (SW:NUCM_BOVIN), contains
similarity to Pfam domain: PF00346 (Respiratory-chain
NADH dehydrogenase, 49 Kd subunit), Score=595.8,
E-value=6.4e-215, N=1>
Length = 482
Score = 146 bits (365), Expect = 4e-34
Identities = 108/389 (27%), Positives = 182/389 (46%), Gaps = 29/389 (7%)
Query: 12 FGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGIC 71
FGP HP + +L L+GE I+ +G R + + + Y Q + +R+ +
Sbjct: 103 FGPQHPAAHGVLRLVLKLEGEVIIKAIPHIGLLHRATEKLIEHKTYTQALPYFDRLDYVS 162
Query: 72 SFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLT 131
+ + AVE++ GI++P RA+YIR ++GEL RI +H++ + D+G T
Sbjct: 163 MMCNEQAWSLAVEKLLGIDIPTRAKYIRTLMGELTRIQNHIMGITTHALDVGAMTPFFWM 222
Query: 132 WLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDVFL 191
+ REK+ + E ++G R++ + + GGV D+ + D + E + ++ED+
Sbjct: 223 FEEREKLFEFSERVSGARMHANYVRPGGVAWDLPIGLMDDIYDWAIKFPERIDELEDMLT 282
Query: 192 HDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIK-PIMPE 250
+ +AR + ++ A+ G G RGSG++ D R +E Y D+ PI
Sbjct: 283 ENRIWKARTIDIGLVSAADALNWGFSGVMVRGSGIKQDVRKTEPYDAYADMEFDVPI--- 339
Query: 251 DVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFP-----------KDNV 299
+GD YDR RI E+ QSL ++ L+++P G+IK K+N+
Sbjct: 340 -----GTKGDCYDRYLCRIEEMRQSLNIVHQCLNKMPAGEIKVDDHKVVPPKRAEMKENM 394
Query: 300 --LVAKLKLLGDGEGIG------RYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFA 351
L+ K +G + EAP+GE Y+ G P R +R P F +L A
Sbjct: 395 ESLIHHFKFFTEGFQVPPGATYVPIEAPKGEFGVYLVA-DGTGKPYRCFIRAPGFAHLAA 453
Query: 352 IAKGLEGNQLADVVVAIASIDPCLSCTDR 380
I + +AD+V I ++D DR
Sbjct: 454 IHDVCYMSLIADIVAVIGTMDIVFGEVDR 482
>emb|CAB65521.1| (AJ249783) NUCM protein [Yarrowia lipolytica]
Length = 466
Score = 146 bits (364), Expect = 6e-34
Identities = 106/390 (27%), Positives = 181/390 (46%), Gaps = 27/390 (6%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
+ FGP HP + IL L GE I+ D +G RG + + + Y+Q + +R+
Sbjct: 85 INFGPQHPAAHGVLRLILELSGEEIIRSDPHVGLLHRGTEKLIEYKTYMQALPYFDRLDY 144
Query: 70 ICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLH 129
+ ++ + AVE++ +EVP R +YIR + GE+ R+ +HL+++ D+G T
Sbjct: 145 VSMMTNEQVFSLAVEKLLNVEVPLRGKYIRTMFGEITRVLNHLMSVCSHAMDVGALTPFL 204
Query: 130 LTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDV 189
+ REK+M+ E ++G R++ + + GGV +D+ + + + + +IE++
Sbjct: 205 WGFEEREKLMEFYERVSGARLHAAYVRPGGVSQDLPAGLLDDIYMWATQFGDRLDEIEEL 264
Query: 190 FLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMP 249
+ + R N + + A+ +G GP RGSG+ D R + Y + +P
Sbjct: 265 LTDNRIWKLRTVNIGTVTAQDALNLGLSGPMLRGSGIPFDIRKNAPYDAYDKVDFD--VP 322
Query: 250 EDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIK------TFPKDNVLVAK 303
+ GD YDR +R+ E QSL +IE + +P G +K P N++
Sbjct: 323 VGM-----NGDCYDRYLIRMAEFRQSLRIIEQCCNDMPAGAVKVEDFKINSPPRNLMKED 377
Query: 304 LKLL-------------GDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLF 350
++ L GE EAP+GE+ YV G + P + K+R P F +L
Sbjct: 378 MEALIHHFLLYTKGYSVPPGETYTAIEAPKGEMGVYVV-SDGSERPYKCKIRAPGFAHLG 436
Query: 351 AIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
A G+ L D V I ++D DR
Sbjct: 437 AFDHIARGHFLPDAVAIIGTMDLVFGEVDR 466
>pir||B71019 probable NADH-ubiquinone oxidoreductase subunit - Pyrococcus
horikoshii >gi|3257871|dbj|BAA30554.1| (AP000006) 394aa
long hypothetical NADH-ubiquinone oxidoreductase subunit
[Pyrococcus horikoshii]
Length = 394
Score = 143 bits (358), Expect = 3e-33
Identities = 113/380 (29%), Positives = 177/380 (45%), Gaps = 29/380 (7%)
Query: 12 FGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGIC 71
FGP H E IL +DG R+V G+ RG + +A R + + + RIC
Sbjct: 33 FGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEFRPWYTNIALLLRICVPE 91
Query: 72 SFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLT 131
S Y AV+E+ G EVPERA++IR ++ EL R+ ++L + L +G T
Sbjct: 92 SDVPEAIYSMAVDEIIGWEVPERAQWIRTLVLELARVSAYLFWIMGLSFKLGVYTAGQWA 151
Query: 132 WLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIE-EKHRRLLLDMIKYYREIMPQIEDVF 190
RE++M + E +TG RV + GGVRRDI +K R + D ++Y R +P +++
Sbjct: 152 AAYRERIMRIFEELTGARVYHIFTIPGGVRRDIPGDKWLRQVRDTVEYIRSKLPDFDNIL 211
Query: 191 LHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIK-PIMP 249
+ R+ ++ KK A+ G GP R +GV D R + Y ++ + P +
Sbjct: 212 FENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLFYSEVEFEVPTLK 271
Query: 250 EDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKG--------KIKTFPKDNVLV 301
E GD RA VR E+ Q L +IE L+ P ++K P+ V
Sbjct: 272 E--------GDALARALVRRYELEQDLYIIEQLLEMGPPSGPYKVEDPRLKNLPRFKVPA 323
Query: 302 AKLKLLGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPN-LFAIAKGLEGNQ 360
G+ E+ +G+ YV G + P R +R P+ + + + K L G +
Sbjct: 324 --------GDAFAHVESTKGDFGAYVV-SDGGNKPYRVHVRGPSIAHGIRVLEKLLVGAR 374
Query: 361 LADVVVAIASIDPCLSCTDR 380
+ADV + + S+D C DR
Sbjct: 375 IADVPIILMSLDNCPPDIDR 394
>sp|P22142|NUCM_NEUCR NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNIT PRECURSOR (COMPLEX
I-49KD) (CI-49KD) >gi|101862|pir||S13801 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) 49K chain -
Neurospora crassa >gi|3048|emb|CAA38368.1| (X54508) NADH
dehydrogenase 49 kD subunit [Neurospora crassa]
Length = 478
Score = 143 bits (357), Expect = 4e-33
Identities = 116/400 (29%), Positives = 188/400 (47%), Gaps = 34/400 (8%)
Query: 3 KVEYWVKVPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMY 62
KV ++ V FGP HP + IL L GE IV D +G RG + + R Y+Q +
Sbjct: 91 KVRHYT-VNFGPQHPAAHGVLRLILELKGEEIVRADPHVGLLHRGTEKLCEYRTYLQALP 149
Query: 63 VAERICGICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDI 122
+R+ + ++ + AVE++ +E+PERA++IR + E+ RI +HL+++ D+
Sbjct: 150 YFDRLDYVSMMTNEQCFALAVEKLLNVEIPERAKWIRTMFAEITRILNHLMSVLSHAMDV 209
Query: 123 GYDTVLHLTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREI 182
G T + REK+M+ E ++G R++ + + GGV +DI LL D+ + +
Sbjct: 210 GALTPFLWGFEEREKLMEFYERVSGARLHAAYVRPGGVHQDIP---LGLLDDIYMWATQF 266
Query: 183 MPQIEDV--FLHDSTIEA-RLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVY 239
+I++ L D+ I RLR ++ A+ + G RGSGV D R S+ Y
Sbjct: 267 GDRIDETEEMLTDNRIWIDRLRGIGVVSAADALNLSFTGVMLRGSGVPWDIRKSQPYDAY 326
Query: 240 PDLGIKPIMPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKI-------- 291
+ +P + GD YDR R+ E QSL +I L+++P G +
Sbjct: 327 DQVEFD--VPVGI-----NGDCYDRYLCRMEEFRQSLRIIHQCLNKMPAGPVRVEDYKIS 379
Query: 292 ---KTFPKDN--------VLVAKLKLLGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWK 340
++ K+N +L K + G+ E P+GE+ YV G + P R
Sbjct: 380 PPPRSAMKENMEALIHHFLLYTKGYAVPPGDTYSAIEGPKGEMGVYVV-SDGSERPYRVH 438
Query: 341 MREPTFPNLFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
+R P F +L G+ LAD V I ++D DR
Sbjct: 439 IRAPGFAHLGGFDHLSRGHMLADAVAVIGTMDLVFGEVDR 478
>gb|AAG23656.1|AF288091_1 (AF288091) NADH dehydrogenase subunit 7 [Thraustochytrium aureum]
Length = 397
Score = 143 bits (357), Expect = 4e-33
Identities = 107/389 (27%), Positives = 188/389 (47%), Gaps = 29/389 (7%)
Query: 12 FGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGIC 71
FGP HP + +L LDGE + D +G RG + + ++ Y+Q + +R+ +
Sbjct: 18 FGPQHPAAHGVLRLVLELDGEVVRKADPHVGLLHRGTEKLVEQKTYLQALPYFDRLDYVS 77
Query: 72 SFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLT 131
+ HTY VE + + +P R+++IRVI E+ RI +HLL + D+G T
Sbjct: 78 IIAQEHTYSIGVETLLDLSIPLRSQFIRVIFLEITRILNHLLAVSCHALDVGAITPFFWG 137
Query: 132 WLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDVFL 191
+ REK+++ E ++G R++ + + GGV DI + + + ++ + + E++
Sbjct: 138 FEEREKLIEFYERVSGARMHAAYVRPGGVSFDIPKGLLNDIFYFCESFKVRLDEFEELLT 197
Query: 192 HDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIK-PIMPE 250
++ + RL N ++ + G G RGSG+ D R + VY L + P+
Sbjct: 198 NNRIWKQRLVNIGVVSAADSKNWGFSGVMLRGSGIPWDLRQNFPYEVYNQLSFEIPV--- 254
Query: 251 DVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTF-----------PKDNV 299
+ GD YDR +RI EI QS+ +I A++ +P+G +K+F K+++
Sbjct: 255 -----GSNGDCYDRYLIRIEEIRQSISIIVQAINLMPEGPVKSFNYKFSNPSKKMMKNSI 309
Query: 300 --LVAKLKLLGDGEGIGR------YEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFA 351
L+ K +G + R EAP+GE ++ G + P R K++ P F +L
Sbjct: 310 EALIHHFKYFTEGFPVNRGEVYVATEAPKGEFGVFLV-SDGSNKPYRCKIKAPGFSHLQG 368
Query: 352 IAKGLEGNQLADVVVAIASIDPCLSCTDR 380
+ +G+ +ADVV I + D DR
Sbjct: 369 LDFMSKGHLIADVVTIIGTQDIVFGEVDR 397
>pir||T36080 probable NADH dehydrogenase - Streptomyces coelicolor
>gi|4585838|emb|CAB40932.1| (AL049630) putative NADH
dehydrogenase [Streptomyces coelicolor A3(2)]
Length = 383
Score = 143 bits (356), Expect = 5e-33
Identities = 104/361 (28%), Positives = 171/361 (46%), Gaps = 13/361 (3%)
Query: 13 GPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGICS 72
GP HP + L LDGERI + + +GY RG + + R+Y Q++ +A R + +
Sbjct: 25 GPQHPSTHGVLRLKLVLDGERITSAEPVIGYMHRGAEKLFEARDYRQIIMLANRHDWLSA 84
Query: 73 FSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLTW 132
FS+ V AVE M G+EVP RA + R ++ EL R+ +HL+ LG ++G T + +
Sbjct: 85 FSNELGVVLAVERMLGMEVPTRAVWTRTLLAELNRVLNHLMFLGSYPLELGGITPVFYAF 144
Query: 133 LAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDVFLH 192
RE + +V+E ++G R++Y +GG++ D+ + R M +D+ L
Sbjct: 145 REREVLQNVMEEVSGGRMHYMFNRVGGLKEDLPAGWTTRARGAVAAVRSRMDVFDDLVLG 204
Query: 193 DSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDL--GIKPIMPE 250
+ R R + + G GP R SGV D R E Y +L +K +
Sbjct: 205 NEIFRGRTRGVGALSAEAVHAYGVSGPVARASGVDFDLRRDEPYLAYGELQDTLKVVTRT 264
Query: 251 DVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKLKLLGDG 310
D GD R + + +L+L + LD++ ++ P + L LK +G
Sbjct: 265 D-------GDCLARFECLLAQTHNALDLADACLDRL--AELAPGPVNQRLPKVLK-APEG 314
Query: 311 EGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFAIAKGLEGNQLADVVVAIAS 370
E P G +Y+ KG P R K+R ++ N+ A+A+ L G +AD+V + S
Sbjct: 315 HTYAWTENPLGINGYYLV-SKGEKTPYRLKLRSASYNNIQALAELLPGTLVADMVAILGS 373
Query: 371 I 371
+
Sbjct: 374 L 374
>sp|P17694|NUCM_BOVIN NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNIT (COMPLEX I-49KD)
(CI-49KD) >gi|89676|pir||S04104 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) 49K chain - bovine
Length = 430
Score = 142 bits (354), Expect = 9e-33
Identities = 107/389 (27%), Positives = 184/389 (46%), Gaps = 29/389 (7%)
Query: 12 FGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGIC 71
FGP HP + ++ L GE + D +G RG + + + Y+Q + +R+ +
Sbjct: 51 FGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVS 110
Query: 72 SFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLT 131
+ Y AVE++ I P RA++IRV+ GE+ R+ +H++ + DIG T
Sbjct: 111 MMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPFFWM 170
Query: 132 WLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDVFL 191
+ REK+ + E ++G R++ + + GGV +D+ + + K + + ++E++
Sbjct: 171 FEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPLGLMDDIYEFSKNFSLRIDELEEMLT 230
Query: 192 HDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIK-PIMPE 250
++ R + I+ + A+ G G RGSG++ D R ++ VY + PI
Sbjct: 231 NNRIWRNRTVDIGIVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPI--- 287
Query: 251 DVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIK------TFPKD------- 297
+RGD YDR R+ E+ QS+ +I L+++P G+IK + PK
Sbjct: 288 -----GSRGDCYDRYLCRVEEMRQSIRIISQCLNKMPPGEIKVDDAKVSPPKRAEMKTSM 342
Query: 298 NVLVAKLKLLGDGEGI------GRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFA 351
L+ KL +G + EAP+GE Y+ G P R K++ P F +L
Sbjct: 343 ESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLV-SDGSSRPYRCKIKAPGFAHLAG 401
Query: 352 IAKGLEGNQLADVVVAIASIDPCLSCTDR 380
+ K +G+ LADVV I + D DR
Sbjct: 402 LDKMSKGHMLADVVAIIGTQDIVFGEVDR 430
>emb|CAA32523.1| (X14338) NADH:ubiquinone oxidoreductase (428 AA) [Bos taurus]
Length = 428
Score = 142 bits (354), Expect = 9e-33
Identities = 107/389 (27%), Positives = 184/389 (46%), Gaps = 29/389 (7%)
Query: 12 FGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGIC 71
FGP HP + ++ L GE + D +G RG + + + Y+Q + +R+ +
Sbjct: 49 FGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVS 108
Query: 72 SFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLT 131
+ Y AVE++ I P RA++IRV+ GE+ R+ +H++ + DIG T
Sbjct: 109 MMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPFFWM 168
Query: 132 WLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDVFL 191
+ REK+ + E ++G R++ + + GGV +D+ + + K + + ++E++
Sbjct: 169 FEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPLGLMDDIYEFSKNFSLRIDELEEMLT 228
Query: 192 HDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIK-PIMPE 250
++ R + I+ + A+ G G RGSG++ D R ++ VY + PI
Sbjct: 229 NNRIWRNRTVDIGIVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPI--- 285
Query: 251 DVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIK------TFPKD------- 297
+RGD YDR R+ E+ QS+ +I L+++P G+IK + PK
Sbjct: 286 -----GSRGDCYDRYLCRVEEMRQSIRIISQCLNKMPPGEIKVDDAKVSPPKRAEMKTSM 340
Query: 298 NVLVAKLKLLGDGEGI------GRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFA 351
L+ KL +G + EAP+GE Y+ G P R K++ P F +L
Sbjct: 341 ESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLV-SDGSSRPYRCKIKAPGFAHLAG 399
Query: 352 IAKGLEGNQLADVVVAIASIDPCLSCTDR 380
+ K +G+ LADVV I + D DR
Sbjct: 400 LDKMSKGHMLADVVAIIGTQDIVFGEVDR 428
>pir||S46437 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 7 - wheat
mitochondrion
Length = 394
Score = 142 bits (354), Expect = 9e-33
Identities = 111/388 (28%), Positives = 180/388 (45%), Gaps = 27/388 (6%)
Query: 12 FGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGIC 71
FGP HP + +L ++GE + + +G RG + + + Y+Q + +R+ +
Sbjct: 15 FGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVS 74
Query: 72 SFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLT 131
+ H Y AVE + EVP RA+YIRV+ E+ RI +HLL L D+G T
Sbjct: 75 MMAQEHAYSLAVERLLNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWA 134
Query: 132 WLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDVFL 191
+ REK+++ E ++G R++ S + GGV +D+ R + + + + ++E++
Sbjct: 135 FEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMLT 194
Query: 192 HDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMPED 251
+ + RL + + + A + G G RGSGV D R + VY L D
Sbjct: 195 GNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGSGVCWDLRRAAPYDVYDQLDF------D 248
Query: 252 VTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKD-------------N 298
V RGD YDR +RI E+ QS+ +I L+Q+P G IK +
Sbjct: 249 VP-VGTRGDCYDRYCIRIEEMRQSVRIIVQCLNQMPSGMIKADDRKLCPPSRSRMKLSME 307
Query: 299 VLVAKLKLLGDGEGI------GRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFAI 352
L+ +L +G + EAP+GE ++ G + P R K+R P F +L +
Sbjct: 308 SLIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLV-SNGSNRPYRCKIRAPGFAHLQGL 366
Query: 353 AKGLEGNQLADVVVAIASIDPCLSCTDR 380
+ + LADVV I + D DR
Sbjct: 367 DFMSKHHMLADVVTIIGTQDIVFGEVDR 394
>gi|4758786 NADH dehydrogenase (ubiquinone) Fe-S protein 2 (49kD)
(NADH-coenzyme Q reductase); NADH-ubiquinone
oxidoreductase Fe-S protein 2 [Homo sapiens]
>gi|7432632|pir||JE0193 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain NDUFS2 precursor - human
>gi|3337443|gb|AAC27453.1| (AF050640) NADH-ubiquinone
oxidoreductase NDUFS2 subunit [Homo sapiens]
Length = 463
Score = 141 bits (353), Expect = 1e-32
Identities = 105/392 (26%), Positives = 184/392 (46%), Gaps = 27/392 (6%)
Query: 8 VKVPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERI 67
+ + FGP HP + ++ L GE + D +G RG + + + Y+Q + +R+
Sbjct: 80 ITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRL 139
Query: 68 CGICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTV 127
+ + Y AVE++ I P RA++IRV+ GE+ R+ +H++ + D+G T
Sbjct: 140 DYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTP 199
Query: 128 LHLTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIE 187
+ REK+ + E ++G R++ + + GGV +D+ + K + + ++E
Sbjct: 200 FFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELE 259
Query: 188 DVFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPI 247
++ ++ R + ++ + A+ G G RGSG++ D R ++ VY +
Sbjct: 260 ELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQV----- 314
Query: 248 MPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIK------TFPKD---- 297
E +RGD YDR R+ E+ QSL +I L+++P G+IK + PK
Sbjct: 315 --EFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDDAKVSPPKRAEMK 372
Query: 298 ---NVLVAKLKLLGDGEGI------GRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPN 348
L+ KL +G + EAP+GE Y+ G P R K++ P F +
Sbjct: 373 TSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLV-SDGSSRPYRCKIKAPGFAH 431
Query: 349 LFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
L + K +G+ LADVV I + D DR
Sbjct: 432 LAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>sp|O75306|NUCM_HUMAN NADH-UBIQUINONE OXIDOREDUCTASE 49 KD SUBUNIT PRECURSOR (COMPLEX
I-49KD) (CI-49KD) >gi|3540239|gb|AAC34362.1| (AF013160)
NADH dehydrogenase-ubiquinone Fe-S protein 2 precursor
[Homo sapiens]
Length = 463
Score = 141 bits (353), Expect = 1e-32
Identities = 105/392 (26%), Positives = 184/392 (46%), Gaps = 27/392 (6%)
Query: 8 VKVPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERI 67
+ + FGP HP + ++ L GE + D +G RG + + + Y+Q + +R+
Sbjct: 80 ITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRL 139
Query: 68 CGICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTV 127
+ + Y AVE++ I P RA++IRV+ GE+ R+ +H++ + D+G T
Sbjct: 140 DYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTP 199
Query: 128 LHLTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIE 187
+ REK+ + E ++G R++ + + GGV +D+ + K + + ++E
Sbjct: 200 FFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELE 259
Query: 188 DVFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPI 247
++ ++ R + ++ + A+ G G RGSG++ D R ++ VY +
Sbjct: 260 ELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQV----- 314
Query: 248 MPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIK------TFPKD---- 297
E +RGD YDR R+ E+ QSL +I L+++P G+IK + PK
Sbjct: 315 --EFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDDAKVSPPKRAEMK 372
Query: 298 ---NVLVAKLKLLGDGEGI------GRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPN 348
L+ KL +G + EAP+GE Y+ G P R K++ P F +
Sbjct: 373 TSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLV-SDGSSRPYRCKIKAPGFAH 431
Query: 349 LFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
L + K +G+ LADVV I + D DR
Sbjct: 432 LAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463
>pir||C75114 NADH dehydrognease I, chain D (nuod) PAB0495 - Pyrococcus abyssi
(strain Orsay) >gi|5458139|emb|CAB49628.1| (AJ248285)
NADH dehydrognease I, subunit D (nuoD) [Pyrococcus
abyssi]
Length = 394
Score = 141 bits (352), Expect = 1e-32
Identities = 113/380 (29%), Positives = 177/380 (45%), Gaps = 29/380 (7%)
Query: 12 FGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGIC 71
FGP H E IL +DG R+V G+ RG + +A R + + + RIC
Sbjct: 33 FGPQHMATEN-FSIILKMDGNRVVKAIANPGFLHRGFEKLAEYRPWYTNIALLLRICVPE 91
Query: 72 SFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLT 131
S Y AV+E+ G EVPERA++IR + E+ R+ ++L + L +G T
Sbjct: 92 SDVPEAIYSLAVDEIIGWEVPERAQWIRTTVLEMARVSAYLFWIMGLSFKLGVYTAGQWA 151
Query: 132 WLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIE-EKHRRLLLDMIKYYREIMPQIEDVF 190
RE++M + E +TG RV + GGVRRDI +K R L D ++Y + +P +++
Sbjct: 152 AAYRERLMRLFEELTGARVYHIYTIPGGVRRDIPGDKWLRQLKDTVEYIKSKLPDFDNLV 211
Query: 191 LHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIK-PIMP 249
+ R+ ++ KK A+ G GP R +GV D R + +YP+L + P +
Sbjct: 212 FENYITYRRMEGIGVMDKKFALAEGVTGPNLRATGVAYDVRKDDPYLLYPELDFEVPTLR 271
Query: 250 EDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKG--------KIKTFPKDNVLV 301
E GD RA VR E+ Q L ++E L+ P ++K P+ V
Sbjct: 272 E--------GDALARALVRRYELEQDLYILEQLLEMGPPSGPYKVEDPRLKNLPRFKVPA 323
Query: 302 AKLKLLGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPN-LFAIAKGLEGNQ 360
G+ E+ +G+ YV G P R +R P+ + + + + L G +
Sbjct: 324 --------GDAFAHVESTKGDFGAYVV-SDGSHKPYRVHVRGPSIAHGIRVLEQLLVGAR 374
Query: 361 LADVVVAIASIDPCLSCTDR 380
+ADV V + S+D C DR
Sbjct: 375 IADVPVILMSLDNCPPDIDR 394
>pir||S57332 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 7 - wood tobacco
mitochondrion
Length = 394
Score = 141 bits (351), Expect = 2e-32
Identities = 111/392 (28%), Positives = 183/392 (46%), Gaps = 35/392 (8%)
Query: 12 FGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGIC 71
FGP HP + +L ++GE + + +G RG + + + Y+Q + +R+ +
Sbjct: 15 FGPQHPAAHGVLRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVS 74
Query: 72 SFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLT 131
+ H Y AVE + EVP RA+YIRV+ E+ RI +HLL L D+G T
Sbjct: 75 MMAQEHAYSLAVERLLNCEVPLRAQYIRVLFCEITRILNHLLALTTHAMDVGALTPFLWA 134
Query: 132 WLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREI---MPQIED 188
+ REK+++ E ++G R++ S + GGV +D+ L +D+ + ++ + ++E+
Sbjct: 135 FEEREKLLEFYERVSGARMHASFIRPGGVAQDLP---LGLCIDIDSFTQQFASRIDELEE 191
Query: 189 VFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIK-PI 247
+ + + RL + + + A + G G RGSGV D R + VY L P+
Sbjct: 192 MLTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGSGVCWDLRKAAPYDVYDQLDFDIPV 251
Query: 248 MPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKD---------- 297
RGD YDR +RI E+ QS+ +I L+Q+P G IK +
Sbjct: 252 --------GTRGDCYDRYCIRIEEMRQSVRIIVQCLNQMPSGMIKADDRKLCPPSRSRMK 303
Query: 298 ---NVLVAKLKLLGDGEGI------GRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPN 348
L+ +L +G + EAP+GE ++ G + P R K+R P F +
Sbjct: 304 TSMESLIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLV-SNGSNRPYRCKIRAPCFAH 362
Query: 349 LFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
L + + + LADVV I + D DR
Sbjct: 363 LQGLDFMSKHHMLADVVTTIGTQDIVFGEVDR 394
>sp|O07310|NUOD_RHOCA NADH DEHYDROGENASE I CHAIN D (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
D) >gi|3282562|gb|AAC24988.1| (AF029365) NUOD
[Rhodobacter capsulatus]
Length = 413
Score = 139 bits (346), Expect = 7e-32
Identities = 116/398 (29%), Positives = 182/398 (45%), Gaps = 40/398 (10%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
+ FGP HP + +L LDGE + D +G RG + + R Y+Q +R+
Sbjct: 29 INFGPQHPAAHGVLRMVLELDGEIVERADPHIGLLHRGTEKLMESRTYLQNTPYFDRLDY 88
Query: 70 ICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLH 129
+ + H + A+E++ G VP RA IRV+ E+ RI +HLLN+ D+G T
Sbjct: 89 VAPMNQEHAWCLAIEKLTGTAVPRRASIIRVLFSEIGRILNHLLNVTTQAMDVGALTPPL 148
Query: 130 LTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQ---- 185
+ REK+M E G R++ + GGV +D+ L+D I+ + + PQ
Sbjct: 149 WGFEEREKLMIFYERACGARLHANYFRPGGVHQDLPPD----LIDDIEIWAKAFPQVLDD 204
Query: 186 IEDVFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIK 245
IE + + + R + II + + G G RGSG+ D R ++ Y + K
Sbjct: 205 IEGLLTENRIFKQRNADICIITEAEIEKWGYSGVMVRGSGLAWDLRRAQPYECYDEFDFK 264
Query: 246 PIMPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHAL----------DQIPKGKIKTFP 295
+ ++ GD YDR VR+ E+ +S ++I A D + +GK+ T P
Sbjct: 265 VAVGKN-------GDCYDRYLVRMAEMRESTKIILQACAKLRAPDGQGDILARGKL-TPP 316
Query: 296 KD-------NVLVAKLKLLGD------GEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMR 342
K L+ KL + GE EAP+GE Y+ G + P R K+R
Sbjct: 317 KRAEMKTSMEALIHHFKLYTEGFKVPAGEVYAAVEAPKGEFGVYLVA-DGTNKPYRAKIR 375
Query: 343 EPTFPNLFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
P + +L +I +G+QLADV I ++D DR
Sbjct: 376 APGYAHLQSIDAVAKGHQLADVSAIIGTMDVVFGEIDR 413
>gi|11497462 NADH dehydrogenase (ubiquinone), subunit 7 [Prototheca wickerhamii]
>gi|6647672|sp|Q37619|NUCM_PROWI NADH-UBIQUINONE
OXIDOREDUCTASE 49 KDA SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 7) >gi|7432635|pir||T11921 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 7 - Prototheca
wickerhamii mitochondrion >gi|467853|gb|AAD12640.1|
(U02970) NADH dehydrogenase (ubiquinone), subunit 7
[Prototheca wickerhamii]
Length = 400
Score = 136 bits (340), Expect = 4e-31
Identities = 105/393 (26%), Positives = 183/393 (45%), Gaps = 31/393 (7%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
+ FGP HP + +L ++GE + D +G RG + + +NY+Q + +R+
Sbjct: 17 INFGPQHPAAHGVLRLVLEMNGEVVQRSDPHIGLLHRGTEKLIEYKNYLQALPYFDRLDY 76
Query: 70 ICSFSHNHTYVRAVEEMAGI--EVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTV 127
+ H Y AVE++ I ++P RA+YIRV+ E+ RI +HLL + D+G T
Sbjct: 77 VSMMCQEHAYSLAVEKLLNISKDIPLRAQYIRVLFSEITRILNHLLAVTCHAMDVGALTP 136
Query: 128 LHLTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIE 187
+ REK+M+ E ++G R++ + + GGV D+ + K + + +IE
Sbjct: 137 FLWGFEEREKLMEFYERVSGARMHAAYIRPGGVALDLPLGLCEDIYKFSKQFASRIDEIE 196
Query: 188 DVFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIK-P 246
++ + + RL + ++ + A++ G RGSG+ D R ++ VY + P
Sbjct: 197 EMLTSNRIWKQRLVDVGVVSAEQALDWSFSGVLLRGSGIAWDLRKTQPYEVYDRMKFNIP 256
Query: 247 IMPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIK------TFPKDNVL 300
+ RGD YDR +R+ E+ +SL ++ ++++ KG I+ T P + +
Sbjct: 257 V--------GTRGDCYDRYLIRVQEMRESLRIVMQTINEMSKGIIRLDDRKITPPTRDQM 308
Query: 301 VAKLK-------------LLGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFP 347
++ ++ GE EAP+GE Y+ G P R K+R P F
Sbjct: 309 KQSMESLIHHFKFYTGGFVVPAGETYTAVEAPKGEFGVYLV-SNGTSKPYRCKIRAPGFA 367
Query: 348 NLFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
+L + + LADVV I + D DR
Sbjct: 368 HLQGLDFMARNHMLADVVTIIGTQDIVFGEVDR 400
>gi|7524987 NADH dehydrogenase subunit 7 [Dictyostelium discoideum]
>gi|6647670|sp|Q23883|NUCM_DICDI NADH-UBIQUINONE
OXIDOREDUCTASE 49 KDA SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 7) >gi|11254566|pir||T43763 NADH dehydrogenase
chain 7 [imported] - slime mold (Dictyostelium
discoideum) mitochondrion >gi|1088421|dbj|BAA04731.1|
(D21196) 49kd subunit of iron-sulphur subcomplex of
NADH-ubiquinone reductase [Dictyostelium discoideum]
>gi|4958890|dbj|BAA78067.1| (AB000109) NADH
dehydrogenase subunit 7 [Dictyostelium discoideum]
Length = 406
Score = 136 bits (339), Expect = 5e-31
Identities = 108/395 (27%), Positives = 181/395 (45%), Gaps = 35/395 (8%)
Query: 12 FGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGIC 71
FGP HP + I+ L+ E +V V+ +G RG + + + Y Q + +R+ +
Sbjct: 21 FGPQHPAAHGVLRLIVELESENVVRVEPHIGLLHRGTEKLIEGKTYTQALPYFDRLDYVS 80
Query: 72 SFSHNHTYVRAVEEM------AGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYD 125
H Y AVE + +E+P+RA+ IRV+ E+ R+ +H++ D+G
Sbjct: 81 MNVQEHAYSLAVERLYLDSLDIELEIPQRAKVIRVLFSEITRVLNHIMATTTHAMDVGAL 140
Query: 126 TVLHLTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQ 185
T + REK+M+ E ++G R++ + + GGV D+ + + YR+ + +
Sbjct: 141 TPFLWAFEEREKLMEFYERVSGARMHAAYIRPGGVAFDLPMNISEDIYKFVIQYRKRLEE 200
Query: 186 IEDVFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIK 245
IED+ +++ + RL + I+ + A+ G GP RG+G+ D R + Y K
Sbjct: 201 IEDMLINNRIWKQRLVDIGIVSAEEALNYGFTGPLLRGAGIVYDIRKNYPYDDYDKYDFK 260
Query: 246 PIMPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIK------TFPKDNV 299
I+ E+ + Y R +R+ E++QSL +IE AL+ + G IK T P D
Sbjct: 261 IIIGEE-------NNSYTRFIIRMKEMYQSLSIIEQALNNLRPGLIKLEGVNITAP-DRA 312
Query: 300 LVAK--------LKLLGDG------EGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPT 345
V K K +G E EAP+GE Y+ P R +++ P
Sbjct: 313 FVKKDMESCINHFKFFSEGFIIPANENYTIVEAPKGEFGIYLNANDTAK-PYRCRIKAPG 371
Query: 346 FPNLFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
F +L + + + LADVV I + D DR
Sbjct: 372 FLHLQGLNMMSKDHLLADVVTLIGTQDIVFGEVDR 406
>sp|P29916|NQO4_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 (NADH DEHYDROGENASE 1, CHAIN
4) (NDH-1, CHAIN 4) >gi|281484|pir||F42573 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) 48K chain -
Paracoccus denitrificans >gi|150623|gb|AAA03038.1|
(M93015) NADH dehydrogenase [Paracoccus denitrificans]
Length = 412
Score = 136 bits (338), Expect = 6e-31
Identities = 113/402 (28%), Positives = 185/402 (45%), Gaps = 49/402 (12%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
+ FGP HP + +L LDGE + D +G RG + + R Y+Q + +R+
Sbjct: 29 INFGPQHPAAHGLLRMVLELDGEIVERADPHIGLLHRGTEKLMESRTYLQNLPYLDRLDY 88
Query: 70 ICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLH 129
+ + H + A+E + G +P RA IRV+ E+ RI +HL+ + D+G T
Sbjct: 89 VAPMNQEHAWCLAIERLTGTVIPRRASLIRVLYSEIGRILNHLMGVTTGAMDVGALTPPL 148
Query: 130 LTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIED- 188
+ ARE++M E G R++ + GGV +D+ LLD I+ + E P++ D
Sbjct: 149 WGFEAREELMIFYERACGARLHAAYFRPGGVHQDLPPD----LLDDIEEWCERFPKLVDD 204
Query: 189 ---VFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIK 245
+ + + RL + I+ + A++ G G RGSG+ D R S+ Y + +
Sbjct: 205 LDTLLTENRIFKQRLVDIGIVTEADALDWGYTGVMVRGSGLAWDLRRSQPYECYDEFDFQ 264
Query: 246 -PIMPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHAL---------DQIPKGKIKTFP 295
P+ GD YDR R+ E+ +S ++++ A+ D + +GK+ T P
Sbjct: 265 IPV--------GRNGDCYDRYLCRMAEMRESCKIMQQAVQKLRAEPAGDVLARGKL-TPP 315
Query: 296 KD-------NVLVAKLKLLGDGEGIGRYEAPRGELVHYVKGKKGRDG----------PVR 338
+ L+ KL +G ++ P GE+ V+G KG G P R
Sbjct: 316 RRAEMKRDMESLIHHFKLYTEG-----FKVPAGEVYAAVEGPKGEFGVYLVADGTNKPWR 370
Query: 339 WKMREPTFPNLFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
K+R P F +L +I G+ LADV IA++D DR
Sbjct: 371 AKLRAPGFAHLQSIDWMSRGHMLADVPAIIATLDIVFGEVDR 412
>sp|P56907|NUD1_RHIME NADH DEHYDROGENASE I CHAIN D 1 (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN D 1) >gi|5650737|emb|CAB51623.1| (AJ245398) nuoD1
[Sinorhizobium meliloti]
Length = 396
Score = 135 bits (336), Expect = 1e-30
Identities = 110/395 (27%), Positives = 179/395 (44%), Gaps = 33/395 (8%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
+ FGP HP + +L LDGE + VD +G RG + + + Y+Q + +R+
Sbjct: 11 INFGPQHPAAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIEAKTYLQAIPYFDRLDY 70
Query: 70 ICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLH 129
+ + H + AVE + G +VP R + IRV+ E+ RI SHLLN+ D+G T
Sbjct: 71 VAPMNQEHAFALAVERLTGTQVPIRGQLIRVLYSEIGRILSHLLNVTTQAMDVGALTPPL 130
Query: 130 LTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDV 189
+ REK+M E G R++ + GGV +D+ + + + I + + + I+++
Sbjct: 131 WGFEEREKLMVFYERACGARMHAAYFRPGGVHQDLPHQLVEDIGNWIDPFLKTVDDIDEL 190
Query: 190 FLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMP 249
+ + R + ++ + A G G RGSG D R S+ Y DL
Sbjct: 191 LTGNRIFKQRNVDIGVVSLEDAWAWGFSGVMVRGSGAAWDLRRSQPYECYSDLEF----- 245
Query: 250 EDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNV---------- 299
D+ K GD +DR +R+ E+ QS ++ +D++ G K P ++
Sbjct: 246 -DIPIGK-NGDCFDRYLIRMIEMRQSARIMRQCVDRL-LGDAKIGPVSSLDGKIVPPKRG 302
Query: 300 --------LVAKLKLLGD------GEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPT 345
L+ KL + GE EAP+GE Y+ G + P R K+R P
Sbjct: 303 EMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYLV-SDGTNKPYRCKIRAPG 361
Query: 346 FPNLFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
+ +L A+ G+QLADV + S+D DR
Sbjct: 362 YAHLQAMDFLCRGHQLADVSAVLGSLDIVFGEVDR 396
>sp|Q36450|NUCM_NICSY NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 7) >gi|805002|emb|CAA60392.1| (X86706)
NADH:ubiquinone oxydoreductase subunit 7 [Nicotiana
sylvestris]
Length = 394
Score = 131 bits (325), Expect = 2e-29
Identities = 110/393 (27%), Positives = 183/393 (45%), Gaps = 37/393 (9%)
Query: 12 FGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGIC 71
FGP HP + +L ++GE + + +G RG + + + Y+Q + ++R +
Sbjct: 15 FGPQHPAAHGVSRSVLEMNGEVVERAEPHIGLLQRGTEKLIEYKTYLQALPYSDRSEYVS 74
Query: 72 SFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLT 131
+ H + AVE + EVP RA+YIRV+ E+ RI +H L L D+G T
Sbjct: 75 MMAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVGASTPFLWA 134
Query: 132 WLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREI---MPQIED 188
+ REK+++ E ++G R++ S + GGV +D+ L +D+ + ++ + ++E+
Sbjct: 135 FEEREKLLEFYERVSGARMHASFIRPGGVAQDLP---LGLCIDIDSFTQQFASRIDELEE 191
Query: 189 VFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIM 248
+ + + RL + + + A + G G RGSGV D R + V+ L
Sbjct: 192 MSTGNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGSGVCWDLRKAAPYDVHDQLD----- 246
Query: 249 PEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLV----AKL 304
P+ G RGD YDR +RI E+ QS+ +I L+Q+P G IK D L +++
Sbjct: 247 PDIPVG--TRGDRYDRYCIRIEEMRQSVRIIVQCLNQMPSGMIKA--DDRKLCPPSRSRM 302
Query: 305 KLLGDG---------EGIG--------RYEAPRGELVHYVKGKKGRDGPVRWKMREPTFP 347
KL + EG EAP+GE ++ G + P R K+R P F
Sbjct: 303 KLSMESSIHHFEPYTEGFSVPAPSTYTAVEAPKGEFGVFLV-SNGSNRPYRRKIRAPCFA 361
Query: 348 NLFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
+ + + + ADVV I + D DR
Sbjct: 362 HSQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 394
>dbj|BAB08104.1| (AB039844) NADH dehydrogenase subunit 7 [Physarum polycephalum]
Length = 401
Score = 127 bits (315), Expect = 3e-28
Identities = 105/400 (26%), Positives = 178/400 (44%), Gaps = 36/400 (9%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
+ FGP HP + ++ L+GE I N D +G RG + + +N++Q + +R+
Sbjct: 9 INFGPQHPAAHGVLRMVVELNGEVIQNCDPHIGLLHRGTEKLIEHKNFLQSLPYFDRLDY 68
Query: 70 ICSFSHNHTYVRAVEEMAG----------IEVPERAEYIRVIIGELERIHSHLLNLGVLG 119
+ + H Y AVE + I++PERA YIRV+ E+ RI +HLL +
Sbjct: 69 VSMMAQEHAYSLAVENLFNDLCAKALLPYIDIPERARYIRVLFLEITRILNHLLAVTTHA 128
Query: 120 HDIGYDTVLHLTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYY 179
D+G T + REK+++ E ++G R++ + + GGV D+ + + + +
Sbjct: 129 MDVGALTPFLWAFEEREKLIEFYERVSGARMHTAYIRPGGVAYDLPIGLLNDIYEFLTPF 188
Query: 180 REIMPQIEDVFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVY 239
+ + +E++ + + R+ N + +A + G RGSG+ D R Y
Sbjct: 189 SKKLNDMEELLTDNRIFKDRVVNIGKVTYDVAKDHAFSGVMVRGSGIPYDLRKIYNYENY 248
Query: 240 PDLGIKPIMPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKT-FPK-- 296
+ K +P + GD YDR +R+ E+ +S +I ++I G I F K
Sbjct: 249 NEFNFK--IPVGL-----NGDCYDRFMIRVTEMRESCSIIAQVCERITDGFITVPFAKFV 301
Query: 297 ----------DNVLVAKLKLLGDG----EGI--GRYEAPRGELVHYVKGKKGRDGPVRWK 340
L+ K +G E I EAP+GE + + P R
Sbjct: 302 NPTRSDMKHLMEALIQHFKFFSNGIIVPEAIMYTSVEAPKGEFGTLIASYQNNTKPYRCH 361
Query: 341 MREPTFPNLFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
+R P F +L AI + + + LADVV I ++D DR
Sbjct: 362 IRAPGFHHLAAINRVSQNHSLADVVAIIGTLDIVFGEVDR 401
>sp|P93306|NUCM_ARATH NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 7) >gi|6851019|emb|CAA69735.3| (Y08501) NADH
dehydrogenase subunit 7 [Arabidopsis thaliana]
Length = 394
Score = 125 bits (312), Expect = 7e-28
Identities = 104/390 (26%), Positives = 178/390 (44%), Gaps = 31/390 (7%)
Query: 12 FGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGIC 71
FGP HP + +L ++GE + + +G RG + + + Y+Q + ++R +
Sbjct: 15 FGPQHPAAHGVSRLVLEMNGEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYSDRSDYVS 74
Query: 72 SFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLT 131
+ H + AVE++ EVP RA+YIRV+ E+ RI +H L L D+G T
Sbjct: 75 MMAQEHAHSSAVEKLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVGALTPFLWA 134
Query: 132 WLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDVFL 191
+ REK+++ E ++G R++ S + GGV +D+ R + + + + ++E++
Sbjct: 135 FEEREKLLEFYERVSGARMHASFIRPGGVAQDLPLGLCRDIDSFTQQFASRIDELEEMST 194
Query: 192 HDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVY--PDLGIKPIMP 249
+ + RL + + + A + G G RG GV D+R + V+ DL + P+
Sbjct: 195 GNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGPGVCWDSRRAAPYDVHDQSDLDV-PV-- 251
Query: 250 EDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKD------------ 297
RGD YDR +RI E+ QSL +I L+Q+P G IK +
Sbjct: 252 ------GTRGDRYDRYCIRIEEMRQSLRIIVQCLNQMPSGMIKADDRKLCPPSRCRMKLS 305
Query: 298 -NVLVAKLKLLGDGEGI------GRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLF 350
+ +L +G + EAP+GE ++ G + P R K+R P +
Sbjct: 306 MESSIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLV-SNGSNRPYRRKIRAPGSAHSQ 364
Query: 351 AIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
+ + + ADVV I + D DR
Sbjct: 365 GLDSMSKHHMPADVVTIIGTQDIVFGEVDR 394
>gi|9838441 NADH dehydrogenase subunit 7 [Beta vulgaris]
>gi|9087303|dbj|BAA99447.1| (AP000397) NADH
dehydrogenase subunit 7 [Beta vulgaris]
Length = 391
Score = 125 bits (310), Expect = 1e-27
Identities = 108/390 (27%), Positives = 175/390 (44%), Gaps = 31/390 (7%)
Query: 12 FGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGIC 71
FGP HP + +L ++GE + + +G RG + + + Y+Q + +R+ +
Sbjct: 12 FGPQHPAAHGVSRLVLEMNGEVVERAEPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVS 71
Query: 72 SFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLT 131
+ H + AVE + EVP RA+YIRV+ E+ RI +H L L D+G T
Sbjct: 72 MMAQEHAHSSAVERLLNCEVPLRAQYIRVLFREITRISNHSLALTTHAMDVGALTPFLWA 131
Query: 132 WLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDVFL 191
+ REK+++ E + G R++ S + GGV +D+ R + + + + ++E++
Sbjct: 132 FEEREKLLEFYERVPGARMHASFIRPGGVAQDLPLGLCRDIDSSTQQFASRIDELEEMST 191
Query: 192 HDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPIMPED 251
+ + RL + + + A + G G RG GV D R + VY L D
Sbjct: 192 GNRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGPGVCWDLRRAAPYDVYDQLDF------D 245
Query: 252 VTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVA----KLKLL 307
V RGD YDR +RI E+ QS+ +I L+Q+P G IK D L ++KL
Sbjct: 246 VP-VGTRGDRYDRYCIRIEEMRQSVRIIVQCLNQMPSGMIKA--DDRKLCPPSRYRMKLS 302
Query: 308 GDG---------EGIG--------RYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLF 350
+ EG EAP+GE ++ G + P R K+R P +
Sbjct: 303 MESSIHHFEPYTEGFSVPAPSTYTAVEAPKGEFGVFLV-SNGSNRPYRRKIRAPGSAHSQ 361
Query: 351 AIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
+ + + ADVV I + D DR
Sbjct: 362 GLDSMSKHHMPADVVTIIGTQDIVSGEVDR 391
>pir||G70749 probable hycE protein - Mycobacterium tuberculosis (strain H37RV)
>gi|1405757|emb|CAA98923.1| (Z74410) hycE [Mycobacterium
tuberculosis]
Length = 492
Score = 122 bits (302), Expect = 1e-26
Identities = 109/374 (29%), Positives = 172/374 (45%), Gaps = 29/374 (7%)
Query: 9 KVPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERIC 68
++P GP+H GL EP F ++ GE IV + +L + RGI+ + R + +AERI
Sbjct: 144 EIPVGPVHAGLIEPGHFRFSVAGETIVRLKARLWFVHRGIEKLFHGRPATAAVDLAERIS 203
Query: 69 GICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVL 128
G S +H + A+E+ GIE+P +R +I ELER+++H +LG L +D+GY
Sbjct: 204 GDTSAAHALAHSLAIEDALGIELPHEVHRLRALIVELERLYNHAADLGALANDVGYSLAN 263
Query: 129 HLTWLAREKVMDVLEAITGNRVNYSMMTIGGVR-RDIEEKHRRLLLDMIKYYREIMPQIE 187
RE ++ A+TG+R+ + GGV R + + D + + ++
Sbjct: 264 AHAQRIRENLLRRNAAVTGHRLLRGAIRAGGVALRALPD------TDELAALAVDLAEVA 317
Query: 188 DVFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPI 247
+ L +S + R A++ A +G +G R SG+R DAR V P I I
Sbjct: 318 TLTLANSVVYDRFAGTAVLHPDDASALGCLGYVARASGLRSDARVEHPTIVLP---ITEI 374
Query: 248 MPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKLKLL 307
D GDV R VR E S L +H ++ G I+ A L +
Sbjct: 375 GAPD-------GDVLARYTVRRDEFAASAALAQHIVES-HTGPIE-------YAATLHPV 419
Query: 308 G-DGEGIGRYEAPRGELVHYVKGKKGRDGPV-RWKMREPTFPNLFAIAKGLEGNQLADVV 365
G GIG E RG +VH V + DG + R K+ +P++ N A+ + + D
Sbjct: 420 GAPSSGIGIVEGWRGTIVHRV--EIDVDGRITRAKVVDPSWFNWPALPVAMADTIVPDFP 477
Query: 366 VAIASIDPCLSCTD 379
+A S + + D
Sbjct: 478 LANKSFNQSYAGND 491
>emb|CAA52952.1| (X75036) NADH dehydrogenase [Triticum aestivum]
Length = 394
Score = 121 bits (300), Expect = 2e-26
Identities = 105/391 (26%), Positives = 178/391 (44%), Gaps = 35/391 (8%)
Query: 13 GPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICGICS 72
GP HP + +L ++GE + + +G RG + + + Y+Q + +R+ + +
Sbjct: 16 GPQHPAAHGVSRSVLEMNGEVVERAEPHIGSLHRGTEKLIEYKTYLQALPYFDRLDYVST 75
Query: 73 FSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVLHLTW 132
+ H + AVE + EVP RA+YIRV+ E+ RI +H L D+G T +
Sbjct: 76 MAQEHAHSSAVERLLNCEVPLRAQYIRVLFCEITRISNHSLASTTHAMDVGASTPFLWAF 135
Query: 133 LAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIEDVFLH 192
REK+++ E + G R++ S + GGV +D+ R + + + + ++E++
Sbjct: 136 EEREKLLEFYERVPGARMHASFIRPGGVAQDLPLGLCRDIDSSTQQFASRIDELEEMSTG 195
Query: 193 DSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVY--PDLGIKPIMPE 250
+ + RL + + + A + G G RG GV D+R + V+ DL + P+
Sbjct: 196 NRIWKQRLVDIGTVTAQQAKDWGFSGVMLRGPGVCWDSRRAAPYDVHDQSDLDV-PV--- 251
Query: 251 DVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLV----AKLKL 306
RGD YDR +RI E+ QS+ +I +Q+P G IK D L +++KL
Sbjct: 252 -----GTRGDRYDRYCIRIEEMRQSVRIIVQCPNQMPSGMIKA--DDRKLCPPSRSRMKL 304
Query: 307 LGDG---------EGIG--------RYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNL 349
+ EG EAP+GE ++ G + P R K+R P F +
Sbjct: 305 SMESSIHHFELYTEGFSVPAPSTYTAVEAPKGEFGVFLV-SNGSNRPYRCKIRAPGFAHS 363
Query: 350 FAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
+ + + ADVV I + D DR
Sbjct: 364 QGLDSMSKHHMPADVVTIIGTQDIVFGEVDR 394
>sp|P15689|NUCM_PARTE NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT (NADH DEHYDROGENASE
SUBUNIT 7) >gi|84291|pir||S07733 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) 46K chain - Paramecium
tetraurelia mitochondrion >gi|578751|emb|CAA34042.1|
(X15917) ORF400 protein (AA 1-400) [Paramecium aurelia]
>gi|1019629|gb|AAA79254.1| (M26930) ORF 400 [Paramecium
aurelia]
Length = 400
Score = 104 bits (257), Expect = 2e-21
Identities = 96/405 (23%), Positives = 170/405 (41%), Gaps = 44/405 (10%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
V FGP HP + IL L+GE + +D+ +G RG + + + Y+Q M +R+
Sbjct: 6 VNFGPQHPAAHGVLRLILQLNGEVVEKMDIHIGLLHRGSEKLMETKPYLQSMPYFDRLDY 65
Query: 70 ICSFSHNHTYVRAVEEMAG-IEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVL 128
+ H Y A+E + +R + EL RI +H+L + DIG + +
Sbjct: 66 VSMMVQEHAYCLAIEALLNTTNYTANFVLVRTMFDELTRILNHMLAIACHALDIGSMSSI 125
Query: 129 HLTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYRE---IMPQ 185
+ REK+M+ E + G R++ + V ++ +LL D++++ + +
Sbjct: 126 FWAFEEREKIMEFYERVCGRRMHAAFYRPNEV--NLNFLSVKLLTDILEFNNNCLTTLSE 183
Query: 186 IEDVFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWS--EKLGVYPDLG 243
+ ++ ++ + RL N I K ++ G G R +G++ D R + Y L
Sbjct: 184 MHNILTYNKIWKQRLVNIGSISYKDCLDFGLTGVMARSTGIKRDLRMDAFDTYANYYYLN 243
Query: 244 IKPIMPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKD------ 297
+ TG+ GD YDR +R+ E+ +S+ +I A+ ++ K P
Sbjct: 244 FR-----SYTGQ--AGDSYDRFLIRMNEMSESINIISQAIFKLTTSKNTCSPASILKALN 296
Query: 298 ----------------NVLVAKLKLLGDGEGI------GRYEAPRGELVHYVKGKKGRDG 335
L+ K +G I E+P+GE G +
Sbjct: 297 KKKFISQTYKNEYSSMEKLITHFKYWSEGFKIQSNWTYQAVESPKGEF-GVTLVSDGSNK 355
Query: 336 PVRWKMREPTFPNLFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
P R K+R P + +L + K +G+ LAD+ I +ID DR
Sbjct: 356 PYRCKVRSPAYHHLQVLPKMSKGHLLADLSALIGTIDIVFGEIDR 400
>gi|8928603 NADH dehydrogenase subunit 7 [Paramecium aurelia]
Length = 422
Score = 104 bits (257), Expect = 2e-21
Identities = 96/405 (23%), Positives = 170/405 (41%), Gaps = 44/405 (10%)
Query: 10 VPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERICG 69
V FGP HP + IL L+GE + +D+ +G RG + + + Y+Q M +R+
Sbjct: 28 VNFGPQHPAAHGVLRLILQLNGEVVEKMDIHIGLLHRGSEKLMETKPYLQSMPYFDRLDY 87
Query: 70 ICSFSHNHTYVRAVEEMAG-IEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDTVL 128
+ H Y A+E + +R + EL RI +H+L + DIG + +
Sbjct: 88 VSMMVQEHAYCLAIEALLNTTNYTANFVLVRTMFDELTRILNHMLAIACHALDIGSMSSI 147
Query: 129 HLTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYRE---IMPQ 185
+ REK+M+ E + G R++ + V ++ +LL D++++ + +
Sbjct: 148 FWAFEEREKIMEFYERVCGRRMHAAFYRPNEV--NLNFLSVKLLTDILEFNNNCLTTLSE 205
Query: 186 IEDVFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWS--EKLGVYPDLG 243
+ ++ ++ + RL N I K ++ G G R +G++ D R + Y L
Sbjct: 206 MHNILTYNKIWKQRLVNIGSISYKDCLDFGLTGVMARSTGIKRDLRMDAFDTYANYYYLN 265
Query: 244 IKPIMPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKD------ 297
+ TG+ GD YDR +R+ E+ +S+ +I A+ ++ K P
Sbjct: 266 FR-----SYTGQ--AGDSYDRFLIRMNEMSESINIISQAIFKLTTSKNTCSPASILKALN 318
Query: 298 ----------------NVLVAKLKLLGDGEGI------GRYEAPRGELVHYVKGKKGRDG 335
L+ K +G I E+P+GE G +
Sbjct: 319 KKKFISQTYKNEYSSMEKLITHFKYWSEGFKIQSNWTYQAVESPKGEF-GVTLVSDGSNK 377
Query: 336 PVRWKMREPTFPNLFAIAKGLEGNQLADVVVAIASIDPCLSCTDR 380
P R K+R P + +L + K +G+ LAD+ I +ID DR
Sbjct: 378 PYRCKVRSPAYHHLQVLPKMSKGHLLADLSALIGTIDIVFGEIDR 422
>pir||A42957 carbon monoxide-induced hydrogenase - Rhodospirillum rubrum
(fragment)
Length = 188
Score = 103 bits (254), Expect = 5e-21
Identities = 65/196 (33%), Positives = 97/196 (49%), Gaps = 16/196 (8%)
Query: 185 QIEDVFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGI 244
+I ++ + +I R R ++ ++ G +GP RGSG D R VY L
Sbjct: 9 EIIPLYQTNPSIVDRTRGIGVLSAADCVDYGLMGPVARGSGHAYDVRKQAPYAVYDRLDF 68
Query: 245 KPIMPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKL 304
+ + E GDV+ RA VR E S+ LI L +P G K P +
Sbjct: 69 EMALGE-------HGDVWSRAMVRWQEALTSIGLIRQCLRDMPDGPTKAGPVPPIPA--- 118
Query: 305 KLLGDGEGIGRYEAPRGELVHYVKGKKGRDGPVRWKMREPTFPNLFAIAKGLEGNQLADV 364
GE + + EAPRGEL++Y+K G D P R K R PT+ N A+ + G +++D+
Sbjct: 119 -----GEAVAKTEAPRGELIYYLK-TNGTDRPERLKWRVPTYMNWDALNVMMAGARISDI 172
Query: 365 VVAIASIDPCLSCTDR 380
+ + SIDPC+SCT+R
Sbjct: 173 PLIVNSIDPCISCTER 188
>gb|AAK41286.1| Formate hydrogenlyase subunit 5 (hycE) [Sulfolobus solfataricus]
Length = 391
Score = 101 bits (250), Expect = 1e-20
Identities = 91/325 (28%), Positives = 148/325 (45%), Gaps = 31/325 (9%)
Query: 9 KVPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERIC 68
K +GP GL E KFI+T +GE+I+ +D ++ Y R I + + ERI
Sbjct: 48 KFIYGPSAGGLLETIKFIITTNGEKILGIDAEV-YKNREI--VISGLTVDDALLRVERIN 104
Query: 69 GICSFSHNHTYVRAVEEMAGIEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDT-V 127
S SH +++ AVE+ +E + R+ ELERI +HL + L +
Sbjct: 105 APFSASHTISFLLAVEDSLELEQDYPTQLKRIAEIELERIRNHLFVISRLTETTSLNVPT 164
Query: 128 LHLTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREIMPQIE 187
HL L EKV ++ + G+R + + I GV D R ++D+ K +++I
Sbjct: 165 YHLLHLV-EKVNRLIGKMCGHRYFFGVNAINGVNCDFGNLLR--IIDITKEFKQIF---- 217
Query: 188 DVFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWSEKLGVYPDLGIKPI 247
D +E+R+ + I+ ++GP R +G+ DAR K Y DLG + +
Sbjct: 218 -----DGLLESRIFIDRLQENGKIIDENSIGPAARAAGLAYDARKDFKALPYEDLGFRTV 272
Query: 248 MPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPKGKIKTFPKDNVLVAKLKLL 307
+ ++ D + R VR EI +S +++ D+I + K
Sbjct: 273 ITQEA-------DSFGRFLVRGMEIIESAKILVELHDEIKNSNNER--------GKNHKQ 317
Query: 308 GDGEGIGRYEAPRGELVHYVKGKKG 332
G GEG+ R E+P G+L +YVK G
Sbjct: 318 GGGEGLARVESPSGDLAYYVKLNNG 342
>gi|11466264 NADH dehydrogenase subunit 7 [Tetrahymena pyriformis]
>gi|5306140|gb|AAD41924.1|AF160864_12 (AF160864) NADH
dehydrogenase subunit 7 [Tetrahymena pyriformis]
Length = 442
Score = 90.9 bits (222), Expect = 3e-17
Identities = 98/426 (23%), Positives = 172/426 (40%), Gaps = 62/426 (14%)
Query: 8 VKVPFGPIHPGLEEPEKFILTLDGERIVNVDVKLGYNLRGIQWIAFRRNYVQLMYVAERI 67
+ V FGP HP + IL L+GE D +G RG + + R Y+Q M +R
Sbjct: 26 MNVNFGPQHPAAHGVLRLILQLNGEIAERFDPHIGLLHRGSEKLIEDRPYLQGMPYFDRF 85
Query: 68 CGICSFSHNHTYVRAVEEMAG-IEVPERAEYIRVIIGELERIHSHLLNLGVLGHDIGYDT 126
+ H Y +E + G IR + EL RI +HLL + D+G +
Sbjct: 86 DYVSMMVQEHAYCLGIESLLGTTNYSATFTQIRTMYDELTRILNHLLAVACHALDVGSMS 145
Query: 127 VLHLTWLAREKVMDVLEAITGNRVNYSMMTIGGVRRDIEEKHRRLLLDMIKYYREI---M 183
+ + REK+M+ E + G R++ + V ++ LL D++++ R +
Sbjct: 146 SVFWAFEEREKLMEFYERVCGARMHAAFYRPNEV--NLNAVSSFLLEDILEFSRNFFTTL 203
Query: 184 PQIEDVFLHDSTIEARLRNCAIIPKKLAIEMGAVGPTGRGSGVRDDARWS--EKLGVYPD 241
++ +V ++ + RL N + ++ G G R G++ D R S E Y
Sbjct: 204 NEMHNVLTYNKIWKQRLINIGTYSFQTCLDYGLTGVMARSCGIKRDLRLSKTETYANYYY 263
Query: 242 LGIKPIMPEDVTGEKARGDVYDRAAVRIGEIWQSLELIEHALDQIPK-GKIKTFPKDNVL 300
L + + + GD YDR +R+ E+ +SL ++ ++++I K IK+ ++ +
Sbjct: 264 LNFRSYVGQ-------HGDCYDRFLIRMNEMCESLNIVNQSINKISKYNNIKSIKNNSNI 316
Query: 301 VAK--------------LKLLGDG---------------EGIGRY-------EAPRGELV 324
+ K L L E I + + G
Sbjct: 317 LNKDSFNRQTTILPHMVLNYLNKNDLNIKNTKNDYNSMEELINHFKFWSKGIKVEPGYTF 376
Query: 325 HYVKGKKGRDG----------PVRWKMREPTFPNLFAIAKGLEGNQLADVVVAIASIDPC 374
V+ KG G P + K+R P + +L + K +G+ LAD+V + ++D
Sbjct: 377 QSVESPKGEFGVSMLSDGSAKPYKCKVRSPAYHHLQVLPKIGKGHFLADLVALVGTVDIV 436
Query: 375 LSCTDR 380
DR
Sbjct: 437 FGEVDR 442
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.142 0.427
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 169535884
Number of Sequences: 2977
Number of extensions: 7444429
Number of successful extensions: 15499
Number of sequences better than 1.0e-10: 98
Number of HSP's better than 0.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 15160
Number of HSP's gapped (non-prelim): 101
length of query: 426
length of database: 189,106,746
effective HSP length: 53
effective length of query: 373
effective length of database: 157,386,935
effective search space: 58705326755
effective search space used: 58705326755
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 166 (69.1 bits)