BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1893 (cooK-like) DE:CO-induced hydrogenase related, subunit
K
(321 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75115 probable NADH dehydrogenase (ubiquinone) (EC 1.6.5.3... 625 e-178
pir||B71018 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 585 e-166
pir||T51315 probable CO-induced hydrogenase complex chain CooK [... 163 3e-39
sp|P16430|HYCD_ECOLI FORMATE HYDROGENLYASE SUBUNIT 4 (FHL SUBUNI... 135 6e-31
pir||B65024 probable hydrogenase (EC 1.18.99.1) chain 4 b2483 [s... 127 1e-28
sp|P77858|HYFC_ECOLI HYDROGENASE-4 COMPONENT C >gi|1616952|gb|AA... 127 1e-28
pir||F75060 probable hydrogenase (EC 1.18.99.1) chain 4 PAB1393 ... 122 6e-27
pir||H75113 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 118 7e-26
pir||E71019 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 117 2e-25
emb|CAA76118.1| (Y16191) echB [Methanosarcina barkeri] 117 2e-25
pir||C72281 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 110 3e-23
pir||D72620 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 108 1e-22
gi|9695396 NADH dehydrogenase subunit 1 [Phytophthora infestans]... 104 2e-21
sp|P48899|NU1M_CYACA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 103 3e-21
gi|11465632 NADH dehydrogenase subunit 1 [Porphyra purpurea] >gi... 103 3e-21
gb|AAK41289.1| Formate hydrogenlyase subunit 4 (hycD) [Sulfolobu... 101 2e-20
gi|11467260 NADH dehydrogenase ND1 [Zea mays] >gi|400636|sp|P257... 99 6e-20
gi|11497586 NADH dehydrogenase ND1 subunit [Spinacia oleracea] >... 98 1e-19
pir||D70749 probable hycD protein - Mycobacterium tuberculosis (... 98 2e-19
gi|7524983 NADH dehydrogenase subunit 1 [Dictyostelium discoideu... 98 2e-19
emb|CAB67225.1| (AJ271079) NADH-plastoquinone oxidoreductase sub... 97 2e-19
gb|AAF65735.1|AF228525_5 (AF228525) F420H2 dehydrogenase subunit... 97 2e-19
gi|11467140 nad1 [Marchantia polymorpha] >gi|462756|sp|P26845|NU... 97 3e-19
gi|11466020 NADH dehydrogenase ND1 subunit [Nicotiana tabacum] >... 97 3e-19
emb|CAB44668.1| (AJ242867) NDH-A protein [Anabaena PCC7120] 97 3e-19
pir||D75387 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 97 3e-19
gi|11466757 ndh1 [Marchantia polymorpha] >gi|128619|sp|P06255|NU... 96 4e-19
gi|11466852 NADH dehydrogenase ND1 [Oryza sativa] >gi|128620|sp|... 96 7e-19
pir||A71839 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N... 95 1e-18
sp|P06254|NU1C_TOBAC NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1, ... 95 1e-18
gi|5835304 NADH dehydrogenase subunit 1 [Arbacia lixula] >gi|743... 95 1e-18
emb|CAA09812.1| (AJ011848) NADH dehydrogenase ND1 [Hordeum vulgare] 95 1e-18
gb|AAF03197.1|AF110138_29 (AF110138) NADH dehydrogenase subunit ... 94 2e-18
sp|P26522|NU1C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1 >... 94 3e-18
pir||S34389 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 93 4e-18
pir||C64678 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain N... 93 5e-18
gi|5819099 NADH dehydrogenase subunit 1 [Balaenoptera physalus] ... 93 5e-18
gi|7525090 NADH dehydrogenase ND1 [Arabidopsis thaliana] >gi|588... 93 5e-18
gi|8954370 NADH dehydrogenase subunit 1 [Cyanidioschyzon merolae... 93 5e-18
gi|5836031 NADH dehydrogenase subunit 1 [Hippopotamus amphibius]... 92 6e-18
sp|Q00242|NU1C_PLEBO NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1 H... 92 8e-18
gb|AAB97894.1| (AF036381) NADH dehydrogenase subunit 1 [Thymallu... 92 1e-17
gi|11466505 NADH dehydrogenase, subunit 1 [Reclinomonas american... 91 1e-17
sp|Q60019|NQO8_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 8 (NAD... 91 2e-17
gi|11466583 NADH dehydrogenase subunit 1 [Rhodomonas salina] >gi... 91 2e-17
emb|CAC12095.1| (AL445066) NADH dehydrogenase, subunit I related... 91 2e-17
gi|5835793 NADH dehydrogenase subunit 1 [Erinaceus europaeus] 91 2e-17
gb|AAC69445.1| (AF009349) NADH dehydrogenase subunit 1 [Cucumari... 90 2e-17
gi|5835010 NADH dehydrogenase subunit 1 [Halichoerus grypus] >gi... 90 2e-17
gb|AAG28190.1|AF304201_1 (AF304201) NADH1 [Sus scrofa] 90 2e-17
gi|5834996 NADH dehydrogenase subunit 1 [Balaenoptera musculus] ... 90 3e-17
sp|P42032|NUOH_RHOCA NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINO... 90 3e-17
gi|5835155 NADH dehydrogenase subunit 1 [Gorilla gorilla] >gi|60... 90 3e-17
gi|9653247 NADH dehydrogenase subunit 1 [Chondrus crispus] >gi|1... 90 3e-17
gb|AAB97891.1| (AF036378) NADH dehydrogenase subunit 1 [Thymallu... 90 4e-17
pir||E70413 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 90 4e-17
gi|5835989 NADH dehydrogenase subunit 1 [Cavia porcellus] >gi|56... 90 4e-17
gb|AAF66631.1| (AF143001) NADH dehydrogenase subunit 1 [Rhinolop... 90 4e-17
gi|5835863 NADH dehydrogenase subunit 1 [Sus scrofa] >gi|7431944... 89 5e-17
gi|6137774 NADH dehydrogenase subunit 1 [Platynereis dumerilii] ... 89 5e-17
sp|O78693|NU1M_ATEPA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 89 7e-17
sp|O79874|NU1M_PIG NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|37... 89 7e-17
gi|5835905 NADH dehydrogenase subunit 1 [Salvelinus alpinus] >gi... 89 7e-17
pir||S34388 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 89 7e-17
gi|6137789 NADH dehydrogensae subunit 1 [Metridium senile] >gi|3... 89 7e-17
gb|AAD20607.1| (AF117720) NADH dehydrogenase subunit 1 [Salmo tr... 89 9e-17
gb|AAD43230.1|AF115416_1 (AF115416) NADH dehydrogenase subunit 1... 89 9e-17
pir||A59153 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 89 9e-17
gi|5834858 NADH dehydrogenase subunit 1 [Phoca vitulina] >gi|128... 88 1e-16
gi|5835625 NADH dehydrogenase subunit 1 [Salmo salar] >gi|622666... 88 1e-16
gb|AAD20604.1| (AF117717) NADH dehydrogenase subunit 1 [Salmo tr... 88 1e-16
gb|AAG28216.1|AF304203_1 (AF304203) NADH1 [Sus scrofa] 88 1e-16
sp|Q37165|NU1C_ARATH NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1, ... 88 2e-16
sp|P92604|NU1M_CANFA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 88 2e-16
gi|5835430 NADH dehydrogenase subunit 1 [Dasypus novemcinctus] >... 88 2e-16
gb|AAB97893.1| (AF036380) NADH dehydrogenase subunit 1 [Thymallu... 88 2e-16
gb|AAD20603.1| (AF117716) NADH dehydrogenase subunit 1 [Salmo tr... 88 2e-16
gi|5835262 NADH dehydrogenase subunit 1 [Oncorhynchus mykiss] >g... 88 2e-16
gi|11466642 NADH dehydrogenase subunit 1 [Malawimonas jakobiform... 88 2e-16
gi|5835779 NADH dehydrogenase subunit 1 [Carassius auratus] >gi|... 87 2e-16
gb|AAG28203.1|AF304202_1 (AF304202) NADH1 [Sus scrofa] 87 2e-16
gi|5835024 NADH dehydrogenase subunit 1 [Cyprinus carpio] >gi|12... 87 3e-16
gi|11467596 NADH dehydrogenase, subunit 1 [Allomyces macrogynus]... 87 3e-16
gi|11499419 F420H2:quinone oxidoreductase, 41.2 kDa subunit, put... 87 3e-16
gi|6137802 NADH dehydrogenase subunit 1 [Loxodonta africana] >gi... 87 3e-16
gi|11466917 NADH-ubiquinone oxidoreductase subunit 1 [Podospora ... 87 4e-16
gi|5835332 NADH dehydrogenase subunit 1 [Rhinoceros unicornis] >... 87 4e-16
gb|AAB97890.1| (AF036377) NADH dehydrogenase subunit 1 [Thymallu... 87 4e-16
gi|5835527 NADH dehydrogenase subunit 1 [Oryctolagus cuniculus] ... 87 4e-16
gi|5835653 NADH dehydrogenase subunit 1 [Canis familiaris] >gi|7... 87 4e-16
gi|5835975 NADH dehydrogenase subunit 1 [Vidua chalybeata] >gi|7... 87 4e-16
gi|9997001 NADH dehydrogenase subunit 1 [Tupaia belangeri] >gi|9... 87 4e-16
sp|O78695|NU1M_CEBAP NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 86 5e-16
gi|11386119 NADH dehydrogenase subunit 1 [Pteropus dasymallus] >... 86 5e-16
sp|O78694|NU1M_SAGOE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 86 6e-16
sp|O78710|NU1M_PERGU NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 86 6e-16
gb|AAF66628.1| (AF142998) NADH dehydrogenase subunit 1 [Pteronot... 86 6e-16
pir||E70419 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 85 8e-16
pir||T12407 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 85 8e-16
emb|CAA69811.2| (Y08502) NADH dehydrogenase subunit 1 [Arabidops... 85 8e-16
gb|AAF66630.1| (AF143000) NADH dehydrogenase subunit 1 [Mormoops... 85 8e-16
sp|P57258|NUOH_BUCAI NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINO... 85 8e-16
sp|P95174|NUOH_MYCTU NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINO... 85 1e-15
gb|AAB97889.1| (AF036376) NADH dehydrogenase subunit 1 [Thymallu... 85 1e-15
gi|5835667 NADH dehydrogenase subunit 1 [Artibeus jamaicensis] >... 85 1e-15
gi|5835892 NADH dehydrogenase subunit 1 [Salvelinus fontinalis] ... 85 1e-15
gi|5835127 NADH dehydrogenase subunit 1 [Pan troglodytes] >gi|60... 85 1e-15
gi|5835140 NADH dehydrogenase subunit 1 [Pan paniscus] >gi|60451... 85 1e-15
gi|9695360 NADH dehydrogenase subunit 1 [Paralichthys olivaceus]... 85 1e-15
gi|5835276 NADH dehydrogenase subunit 1 [Crossostoma lacustre] >... 85 1e-15
gb|AAF66632.1| (AF143002) NADH dehydrogenase subunit 1 [Hipposid... 85 1e-15
gi|5834968 NADH dehydrogenase subunit 1 [Paracentrotus lividus] ... 85 1e-15
emb|CAA75485.1| (Y15186) NADH dehydrogenase subunit 1 [Myxine gl... 85 1e-15
sp|O78703|NU1M_MONDO NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 85 1e-15
gi|5835765 NADH dehydrogenase subunit 1 [Orycteropus afer] >gi|7... 85 1e-15
gb|AAF66625.1| (AF142995) NADH dehydrogenase subunit 1 [Artibeus... 85 1e-15
gi|8572569 NADH dehydrogenase subunit 1 [Bombyx mori] >gi|816361... 85 1e-15
gi|5835206 NADH dehydrogenase subunit 1 [Felis catus] >gi|135253... 85 1e-15
gb|AAG33816.1| (AF295564) NADH dehydrogenase subunit 1 [Bombyx m... 85 1e-15
gi|11602892 NADH dehydrogenase subunit 1 [Pteropus scapulatus] >... 85 1e-15
pir||S06058 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 84 2e-15
sp|O78714|NU1M_TACAC NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 84 2e-15
gi|11467870 subunit 1 of NADH-plastoquinoneoxidoreductase [Nephr... 84 2e-15
gi|11466477 NADH dehydrogenase subunit 1 [Chrysodidymus synuroid... 84 2e-15
gi|11545709 NADH dehydrogenase subunit 1 [Sardinops melanostictu... 84 2e-15
pir||E81991 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 84 2e-15
gb|AAF66623.1| (AF142993) NADH dehydrogenase subunit 1 [Glossoph... 84 2e-15
pir||B40358 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 84 2e-15
pir||S49576 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 84 2e-15
sp|O21077|NU1M_MYXGL NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 84 2e-15
gi|11466331 NADH dehydrogenase subunit 1 [Cafeteria roenbergensi... 84 2e-15
pir||E81219 NADH dehydrogenase I, H chain NMB0250 [imported] - N... 84 2e-15
gi|5835555 NADH dehydrogenase subunit 1 [Ovis aries] >gi|6093557... 83 3e-15
gi|11466443 subunit 1 of NADH-plastoquinoneoxidoreductase [Mesos... 83 3e-15
gi|5834954 NADH dehydrogenase subunit 1 [Mus musculus] >gi|13525... 83 4e-15
sp|O78709|NU1M_NOTTY NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 83 4e-15
gi|10803739 NADH dehydrogenase subunit 1 [Gonostoma gracile] >gi... 83 4e-15
gi|11497479 NADH dehydrogenase (ubiquinone), subunit 1 [Protothe... 83 5e-15
gi|5836059 NADH dehydrogenase subunit 1 [Ornithorhynchus anatinu... 83 5e-15
gb|AAF61228.1|AF234896_1 (AF234896) NADH dehydrogenase I [Haemul... 83 5e-15
gi|5835861 NADH dehydrogenase subunit 1 [Daphnia pulex] >gi|7431... 82 7e-15
gb|AAF31674.1|AF178679_1 (AF178679) NADH dehydrogenase subunit 1... 82 7e-15
gi|5835086 NADH dehydrogenase subunit 1 [Asterina pectinifera] >... 82 1e-14
sp|P23650|NU1M_ASTPE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 82 1e-14
gi|5835477 NADH dehydrogenase subunit 1 [Balanoglossus carnosus]... 82 1e-14
gi|11466175 NADH dehydrogenase subunit 1 [Naegleria gruberi] >gi... 82 1e-14
sp|O78702|NU1M_MANTE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 81 2e-14
gi|11610805 NADH dehydrogenase subunit 1 [Chalinolobus tubercula... 81 2e-14
gb|AAF63419.1|AF150756_1 (AF150756) NADH dehydrogenase subunit 1... 81 2e-14
gi|11465884 NADH dehydrogenase subunit 1 [Ochromonas danica] >gi... 81 2e-14
gb|AAF72059.1|AF204057_14 (AF204057) NADH dehydrogenase subunit ... 80 3e-14
pir||B82822 NADH-ubiquinone oxidoreductase, NQO8 subunit XF0312 ... 80 3e-14
emb|CAC14152.1| (AJ245399) putative NADH-ubiquinone oxidoreducta... 80 4e-14
gb|AAC28344.1| (AF065103) NADH dehydrogenase subunit 1 [Nyctalus... 80 5e-14
sp|O80003|NUM1_NYCNO NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 80 5e-14
gi|5835246 NADH dehydrogenase subunit 1 [Drosophila melanogaster... 79 6e-14
gi|5835514 NADH dehydrogenase subunit 1 [Branchiostoma lanceolat... 79 6e-14
gb|AAD09383.1| (AF069431) NADH dehydrogenase subunit 1 [Struthio... 79 6e-14
sp|Q9ZCF7|NUOH_RICPR NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINO... 79 6e-14
gb|AAF61229.1|AF234897_1 (AF234897) NADH dehydrogenase I [Haemul... 79 6e-14
emb|CAA70708.1| (Y09524) NADH dehydrogenase subunit 1 [Branchios... 79 8e-14
gb|AAG23680.1|AF288091_25 (AF288091) NADH dehydrogenase subunit ... 79 8e-14
sp|O78701|NU1M_BRAVA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 78 1e-13
sp|O78713|NU1M_ZAGBR NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 78 1e-13
gb|AAF61225.1|AF234893_1 (AF234893) NADH dehydrogenase I [Haemul... 78 1e-13
sp|P08774|NU1M_NEUCR NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 78 2e-13
pir||S01191 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 78 2e-13
gb|AAA65487.1| (M57527) NDI [Rana catesbeiana] 78 2e-13
sp|P16672|NU1M_RANCA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 78 2e-13
pir||B81252 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1... 78 2e-13
gi|5834898 NADH dehydrogenase subunit 1 [Strongylocentrotus purp... 77 2e-13
sp|O78704|NU1M_MACEU NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|... 77 2e-13
gi|11465930 NADH dehydrogenase subunit 1 [Pedinomonas minor] >gi... 77 2e-13
gb|AAF61226.1|AF234894_1 (AF234894) NADH dehydrogenase I [Haemul... 77 2e-13
gb|AAF61231.1|AF234899_1 (AF234899) NADH dehydrogenase I [Haemul... 77 2e-13
gi|6691423 NADH dehydrogenase subunit 1 [Lampetra fluviatilis] >... 77 3e-13
gi|5835569 NADH dehydrogenase subunit 1 [Dinodon semicarinatus] ... 77 3e-13
gi|5836073 NADH dehydrogenase subunit 1 [Raja radiata] >gi|74319... 77 3e-13
gi|7335680 NADH dehydrogenase subunit 1 [Pupa strigosa] >gi|6683... 76 5e-13
gb|AAF81381.1|AF164585_2 (AF164585) NADH dehydrogenase subunit 1... 76 7e-13
gb|AAG19140.1| (AE005012) NADH dehydrogenase/oxidoreductase; Ndh... 76 7e-13
gi|5835889 NADH dehydrogenase subunit 1 [Ceratitis capitata] >gi... 75 1e-12
pir||S37065 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain H... 75 2e-12
sp|P33603|NUOH_ECOLI NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINO... 75 2e-12
sp|P51937|NU1M_DROSU NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 74 2e-12
gb|AAF66629.1| (AF142999) NADH dehydrogenase subunit 1 [Pteronot... 74 2e-12
gb|AAF81403.1|AF164596_2 (AF164596) NADH dehydrogenase subunit 1... 74 2e-12
gi|5834842 NADH dehydrogenase subunit 1 [Drosophila yakuba] >gi|... 74 3e-12
gb|AAF77264.1| (AF200830) NADH dehydrogenase subunit 1 [Drosophi... 74 3e-12
gb|AAF77276.1| (AF200831) NADH dehydrogenase subunit 1 [Drosophi... 74 3e-12
gb|AAF81379.1|AF164584_2 (AF164584) NADH dehydrogenase subunit 1... 74 3e-12
gb|AAF81385.1|AF164587_2 (AF164587) NADH dehydrogenase subunit 1... 74 3e-12
emb|CAA23994.1| (V00650) URF 1 [Emericella nidulans] 73 4e-12
gi|6691413 NADH dehydrogenase subunit 1 [Terebratulina retusa] >... 73 4e-12
gb|AAF77250.1| (AF200829) NADH dehydrogenase subunit 1 [Drosophi... 73 4e-12
gb|AAF77381.1| (AF200839) NADH dehydrogenase subunit 1 [Drosophi... 73 4e-12
gb|AAF81387.1|AF164588_2 (AF164588) NADH dehydrogenase subunit 1... 73 4e-12
gb|AAF81391.1|AF164590_2 (AF164590) NADH dehydrogenase subunit 1... 73 4e-12
gb|AAF81393.1|AF164591_2 (AF164591) NADH dehydrogenase subunit 1... 73 4e-12
gb|AAF81397.1|AF164593_2 (AF164593) NADH dehydrogenase subunit 1... 73 4e-12
gb|AAF97804.1|AF281148_8 (AF281148) NADH dehydrogenase I subunit... 73 4e-12
gb|AAF77238.1| (AF200828) NADH dehydrogenase subunit 1 [Drosophi... 73 5e-12
gb|AAF81367.1|AF164578_2 (AF164578) NADH dehydrogenase subunit 1... 73 5e-12
gb|AAF81399.1|AF164594_2 (AF164594) NADH dehydrogenase subunit 1... 73 5e-12
gb|AAF81401.1|AF164595_2 (AF164595) NADH dehydrogenase subunit 1... 73 5e-12
gb|AAF72120.1|AF216203_12 (AF216203) NADH dehydrogenase subunit ... 73 6e-12
gb|AAF77289.1| (AF200832) NADH dehydrogenase subunit 1 [Drosophi... 73 6e-12
gb|AAF77303.1| (AF200833) NADH dehydrogenase subunit 1 [Drosophi... 73 6e-12
gb|AAF81377.1|AF164583_2 (AF164583) NADH dehydrogenase subunit 1... 73 6e-12
pir||S06059 gene ND1 intron 4 protein 1 - Podospora anserina mit... 72 8e-12
gi|11467921 NADH dehydrogenase subunit 1 [Scenedesmus obliquus] ... 72 8e-12
gb|AAF78602.1|AF260826_1 (AF260826) NADH subunit 1 [Cochliomyia ... 72 8e-12
gb|AAF81371.1|AF164580_2 (AF164580) NADH dehydrogenase subunit 1... 72 8e-12
gb|AAF81373.1|AF164581_2 (AF164581) NADH dehydrogenase subunit 1... 72 8e-12
gb|AAF81375.1|AF164582_2 (AF164582) NADH dehydrogenase subunit 1... 72 8e-12
gb|AAF81383.1|AF164586_2 (AF164586) NADH dehydrogenase subunit 1... 72 8e-12
gb|AAF61232.1|AF234900_1 (AF234900) NADH dehydrogenase I [Haemul... 72 1e-11
gb|AAF81389.1|AF164589_2 (AF164589) NADH dehydrogenase subunit 1... 72 1e-11
gb|AAF81369.1|AF164579_2 (AF164579) NADH dehydrogenase subunit 1... 71 1e-11
gb|AAF81395.1|AF164592_2 (AF164592) NADH dehydrogenase subunit 1... 71 1e-11
sp|P29920|NQO8_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 8 (NAD... 71 2e-11
emb|CAC08255.1| (AL392146) NADH dehydrogenase subunit [Streptomy... 71 2e-11
emb|CAA96367.1| (Z71695) NADH dehydrogenase subunit 1 [Euhadra h... 70 3e-11
sp|Q60010|NUOH_SALTY NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINO... 69 5e-11
>pir||A75115 probable NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1
PAB1893 [similarity] - Pyrococcus abyssi (strain Orsay)
>gi|5458145|emb|CAB49634.1| (AJ248285) CO-induced
hydrogenase related, subunit K [Pyrococcus abyssi]
Length = 321
Score = 625 bits (1595), Expect = e-178
Identities = 321/321 (100%), Positives = 321/321 (100%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPILQPFYDFLKLMSKETII 60
MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPILQPFYDFLKLMSKETII
Sbjct: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPILQPFYDFLKLMSKETII 60
Query: 61 PNTANFMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVMS 120
PNTANFMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVMS
Sbjct: 61 PNTANFMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVMS 120
Query: 121 SGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELGPM 180
SGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELGPM
Sbjct: 121 SGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELGPM 180
Query: 181 VWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEFI 240
VWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEFI
Sbjct: 181 VWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEFI 240
Query: 241 AASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQAVNLL 300
AASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQAVNLL
Sbjct: 241 AASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQAVNLL 300
Query: 301 WTRVFAASIVGALLLALGVMI 321
WTRVFAASIVGALLLALGVMI
Sbjct: 301 WTRVFAASIVGALLLALGVMI 321
>pir||B71018 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 PH1439
[similarity] - Pyrococcus horikoshii
>gi|3257863|dbj|BAA30546.1| (AP000006) 321aa long
hypothetical NADH-ubiquinone oxidoreductase subunit
[Pyrococcus horikoshii]
Length = 321
Score = 585 bits (1491), Expect = e-166
Identities = 291/321 (90%), Positives = 308/321 (95%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPILQPFYDFLKLMSKETII 60
M +IY LIGLILLY YVSI SLLFSGIDRKLVARMQRRIGPPILQPFYDFLKLMSKETII
Sbjct: 1 MSIIYELIGLILLYIYVSITSLLFSGIDRKLVARMQRRIGPPILQPFYDFLKLMSKETII 60
Query: 61 PNTANFMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVMS 120
PNTANFMFRAAP+LML TVIALLAYTP+GF PLFATKGDIIVFIYLLTLADFFLILGV+S
Sbjct: 61 PNTANFMFRAAPILMLATVIALLAYTPLGFPPLFATKGDIIVFIYLLTLADFFLILGVIS 120
Query: 121 SGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELGPM 180
SGSPYG+IGAAREVAMLISREPAMMLGVF+VMWGISKLGV++PFSLGSLYEHN+WELGPM
Sbjct: 121 SGSPYGKIGAAREVAMLISREPAMMLGVFSVMWGISKLGVKRPFSLGSLYEHNIWELGPM 180
Query: 181 VWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEFI 240
VWVAG+ILIYVFM+WLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEFI
Sbjct: 181 VWVAGIILIYVFMAWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEFI 240
Query: 241 AASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQAVNLL 300
A SLVVAVLFPWQV IPGI+GYI NL+IHT KVFIVL +AKT+FRTVTGRL+ITQAVNLL
Sbjct: 241 ATSLVVAVLFPWQVRIPGIEGYITNLMIHTLKVFIVLFIAKTVFRTVTGRLRITQAVNLL 300
Query: 301 WTRVFAASIVGALLLALGVMI 321
WTRVFAAS+VGALLL LGV I
Sbjct: 301 WTRVFAASVVGALLLVLGVRI 321
>pir||T51315 probable CO-induced hydrogenase complex chain CooK [imported] -
Rhodospirillum rubrum >gi|1515467|gb|AAC45117.1|
(U65510) CooK [Rhodospirillum rubrum]
Length = 323
Score = 163 bits (408), Expect = 3e-39
Identities = 95/285 (33%), Positives = 160/285 (55%), Gaps = 17/285 (5%)
Query: 20 ISLLFSGIDRKLVARMQRRIGPPILQPFYDFLKLMSKETIIPNTANF-MFRAAPVLMLTT 78
+ L G DR++ AR+QRR+G P+LQPFYD LKLM+K T++P AN +F P+L L +
Sbjct: 27 LGLALKGFDRRVFARLQRRVGAPLLQPFYDVLKLMTKRTLVPENANLVVFLMVPLLGLAS 86
Query: 79 VIALLAYTPM-GFSPLFATKGDIIVFIYLLTLADFFLILGVMSSGSPYGRIGAAREVAML 137
+ A P+ G GD++V YLL++ L+L +SGSP+G IG +RE+A++
Sbjct: 87 MGVAAAMIPIPGLYDPSPAFGDLLVLFYLLSVPAVMLMLAGSASGSPFGGIGFSREMAIM 146
Query: 138 ISRE-PAMMLGVFAVMWGISKLGVQKPFSLGSLYE----HNLWELGPMVWVAGVILIYVF 192
++ E P +++ V + + LG SL + H + P +W A + +
Sbjct: 147 LAYEGPILLVIVSVALKTGAALGQPICLSLSEIVRYQQAHGAYLFDPWMWPA----VLTY 202
Query: 193 MSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEFIAASLVVAVLFPW 252
++++ + + + F+IPEAE E+ EG L+EYSG LG++KL ++K + L + + FP
Sbjct: 203 IAFIPANLGISPFDIPEAESEVLEGPLIEYSGVALGLLKLTSAVKSVVVIGLGIVLFFP- 261
Query: 253 QVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQAV 297
G +G + L++ K ++ + ++ R GR++I QAV
Sbjct: 262 ----NGPEG-LFGLVVFALKCLVITVCGVSVLRAAVGRMRIDQAV 301
>sp|P16430|HYCD_ECOLI FORMATE HYDROGENLYASE SUBUNIT 4 (FHL SUBUNIT 4) (HYDROGENASE 3
COMPONENT D) >gi|78774|pir||S08622 hydrogenase (EC
1.18.99.1) 3 chain 4 - Escherichia coli
>gi|41683|emb|CAA35549.1| (X17506) hycD [Escherichia
coli] >gi|882615|gb|AAA69232.1| (U29579) formate
hydrogenlyase subunit 4 [Escherichia coli]
>gi|1789077|gb|AAC75764.1| (AE000356) membrane-spanning
protein of hydrogenase 3 (part of FHL complex)
[Escherichia coli K12] >gi|1093497|prf||2104213D hycD
gene [Escherichia coli]
Length = 307
Score = 135 bits (337), Expect = 6e-31
Identities = 94/321 (29%), Positives = 163/321 (50%), Gaps = 20/321 (6%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPILQPFYDFLKLMSKETII 60
M V+Y LI ++L+A ++ L SGI R AR+ R GP +LQ + D +KL+ ++++
Sbjct: 1 MSVLYPLIQALVLFA----VAPLLSGITRVARARLHNRRGPGVLQEYRDIIKLLGRQSVG 56
Query: 61 PNTANFMFRAAPVLMLTTVIALLAYTPMGF--SPLFATKGDIIVFIYLLTLADFFLILGV 118
P+ + ++FR P +M+ ++ + P+ SPL GD+I +YL +A FF +
Sbjct: 57 PDASGWVFRLTPYVMVGVMLTIATALPVVTVGSPL-PQLGDLITLLYLFAIARFFFAISG 115
Query: 119 MSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELG 178
+ +GSP+ IGA+RE + + EP ++LG++ + ++Y W L
Sbjct: 116 LDTGSPFTAIGASREAMLGVLVEPMLLLGLWVAAQVAGSTNISN--ITDTVYH---WPLS 170
Query: 179 PMVWVAGVILIYVFMSWLASEIEVGF--FNIPEAEEEIAEGTLVEYSGRYLGIIKLAESI 236
+ + + F A+ IE+G F++ EAE+E+ EG L EYSG G++K S+
Sbjct: 171 QSIPLVLALCACAF----ATFIEMGKLPFDLAEAEQELQEGPLSEYSGSGFGVMKWGISL 226
Query: 237 KEFIAASLVVAVLFPW-QVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQ 295
K+ + + V V PW Q+ G ++ L+I K+ + +LV +F RL++
Sbjct: 227 KQLVVLQMFVGVFIPWGQMETFTAGGLLLALVIAIVKLVVGVLVI-ALFENSMARLRLDI 285
Query: 296 AVNLLWTRVFAASIVGALLLA 316
+ W A + LLA
Sbjct: 286 TPRITWAGFGFAFLAFVSLLA 306
>pir||B65024 probable hydrogenase (EC 1.18.99.1) chain 4 b2483 [similarity] -
Escherichia coli (strain K-12)
>gi|1788828|gb|AAC75536.1| (AE000335) hydrogenase 4
membrane subunit [Escherichia coli K12]
>gi|1799911|dbj|BAA16361.1| (D90876) FORMATE
HYDROGENLYASE SUBUNIT 4 (FHL SUBUNIT 4) (HYDROGENASE 4,
SUBUNIT 4). [Escherichia coli]
>gi|1805542|dbj|BAA16371.1| (D90877) FORMATE
HYDROGENLYASE SUBUNIT 4 (FHL SUBUNIT 4) (HYDROGENASE 4,
SUBUNIT 4). [Escherichia coli]
Length = 322
Score = 127 bits (317), Expect = 1e-28
Identities = 92/305 (30%), Positives = 157/305 (51%), Gaps = 23/305 (7%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPILQPFYDFLKLMSKETIIPN 62
VI+AL ++L +++ LF+GI R++ ARM R GP I Q + D KL ++ + P
Sbjct: 18 VIFALAQAVILL----MLTPLFTGISRQIRARMHSRRGPGIWQDYRDIHKLFKRQEVAPT 73
Query: 63 TANFMFRAAPVLMLTTVIALLAYTPM--GFSPLFATKGDIIVFIYLLTLADFFLILGVMS 120
++ MFR P +++++++ L P+ SP FA GD+I IYLL L FF L +
Sbjct: 74 SSGLMFRLMPWVLISSMLVLAMALPLFITVSP-FAGGGDLITLIYLLALFRFFFALSGLD 132
Query: 121 SGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELGPM 180
+GSP+ +GA+RE+ + I EP ++L + + GS + + M
Sbjct: 133 TGSPFAGVGASRELTLGILVEPMLILSLLVL-----------ALIAGSTHIEMISNTLAM 181
Query: 181 VWVAGVILIYVFMS-WLASEIEVGF--FNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIK 237
W + + + ++ A IE+G F++ EAE+E+ EG L EYSG L + K +K
Sbjct: 182 GWNSPLTTVLALLACGFACFIEMGKIPFDVAEAEQELQEGPLTEYSGAGLALAKWGLGLK 241
Query: 238 EFIAASLVVAVLFPW-QVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVT-GRLKITQ 295
+ + ASL VA+ P+ + + + +L++ KV ++ ++A T+ GR +
Sbjct: 242 QVVMASLFVALFLPFGRAQELSLACLLTSLVVTLLKVLLIFVLASIAENTLARGRFLLIH 301
Query: 296 AVNLL 300
V L
Sbjct: 302 HVTWL 306
>sp|P77858|HYFC_ECOLI HYDROGENASE-4 COMPONENT C >gi|1616952|gb|AAB88565.1| (M63654) HyfC
[Escherichia coli]
Length = 315
Score = 127 bits (317), Expect = 1e-28
Identities = 92/305 (30%), Positives = 157/305 (51%), Gaps = 23/305 (7%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPILQPFYDFLKLMSKETIIPN 62
VI+AL ++L +++ LF+GI R++ ARM R GP I Q + D KL ++ + P
Sbjct: 11 VIFALAQAVILL----MLTPLFTGISRQIRARMHSRRGPGIWQDYRDIHKLFKRQEVAPT 66
Query: 63 TANFMFRAAPVLMLTTVIALLAYTPM--GFSPLFATKGDIIVFIYLLTLADFFLILGVMS 120
++ MFR P +++++++ L P+ SP FA GD+I IYLL L FF L +
Sbjct: 67 SSGLMFRLMPWVLISSMLVLAMALPLFITVSP-FAGGGDLITLIYLLALFRFFFALSGLD 125
Query: 121 SGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELGPM 180
+GSP+ +GA+RE+ + I EP ++L + + GS + + M
Sbjct: 126 TGSPFAGVGASRELTLGILVEPMLILSLLVL-----------ALIAGSTHIEMISNTLAM 174
Query: 181 VWVAGVILIYVFMS-WLASEIEVGF--FNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIK 237
W + + + ++ A IE+G F++ EAE+E+ EG L EYSG L + K +K
Sbjct: 175 GWNSPLTTVLALLACGFACFIEMGKIPFDVAEAEQELQEGPLTEYSGAGLALAKWGLGLK 234
Query: 238 EFIAASLVVAVLFPW-QVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVT-GRLKITQ 295
+ + ASL VA+ P+ + + + +L++ KV ++ ++A T+ GR +
Sbjct: 235 QVVMASLFVALFLPFGRAQELSLACLLTSLVVTLLKVLLIFVLASIAENTLARGRFLLIH 294
Query: 296 AVNLL 300
V L
Sbjct: 295 HVTWL 299
>pir||F75060 probable hydrogenase (EC 1.18.99.1) chain 4 PAB1393 [similarity] -
Pyrococcus abyssi (strain Orsay)
>gi|5458892|emb|CAB50379.1| (AJ248287) HYDROGENASE-4
COMPONENT C (EC 1.-.-.-) [Pyrococcus abyssi]
Length = 299
Score = 122 bits (303), Expect = 6e-27
Identities = 98/314 (31%), Positives = 151/314 (47%), Gaps = 27/314 (8%)
Query: 11 ILLYAYVSIISLLFSGIDRKLVARMQRRIGPPILQPFYDFLKLMSKETIIPNTANFMFRA 70
IL V + GI RK+ AR+Q R GPP++Q +YD +KL+S ++IP T N++F+
Sbjct: 6 ILALGIVLFLPPYLDGIARKVKARIQHRRGPPLMQTWYDLVKLLSIPSVIP-TRNWLFKL 64
Query: 71 APVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVMSSGSPYGRIGA 130
P L + I P G ++IVF Y + + FL+L S + + +G+
Sbjct: 65 YPYLAFASAIVAALLLPYGGVIPLKLGYNLIVFFYAILMVSVFLMLAGFSVQNAFSHLGS 124
Query: 131 AREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELGPMVWVAGVILIY 190
ARE+ ++++ EP + A+++GI +G + + L P + VA IL Y
Sbjct: 125 AREMMLILTVEP-----LLAIVYGILAYNAGS-LDIGEIISN--LHLTPSLIVAYAILAY 176
Query: 191 VFMSWLASEIEVGF--FNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEF----IAASL 244
+ +E GF F++ EAE E+ G L EYSGR LGI A IK F SL
Sbjct: 177 ------SMYVESGFVPFDVAEAETEVIGGPLAEYSGRLLGIFYYAIHIKRFALLWFFVSL 230
Query: 245 VVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQAVNLLWTRV 304
VV L P + ++ LL+ A ++ + T RL+I Q + R+
Sbjct: 231 VVLPLVPITTQAKALLALLLQLLLTLALYPVIASLEAT-----NARLRIDQVAKVN-VRL 284
Query: 305 FAASIVGALLLALG 318
F ASI+ + LG
Sbjct: 285 FFASIIVFAMSFLG 298
>pir||H75113 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 PAB0492
[similarity] - Pyrococcus abyssi (strain Orsay)
>gi|5458136|emb|CAB49625.1| (AJ248285) NADH
dehydrogenase I, subunit H [Pyrococcus abyssi]
Length = 309
Score = 118 bits (294), Expect = 7e-26
Identities = 94/323 (29%), Positives = 154/323 (47%), Gaps = 22/323 (6%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPILQPFYDFLKLMSKETIIPN 62
++ ++ IL+ Y + + +F GI RK+ AR+ RRIGPPI QP D +KL K+ +
Sbjct: 1 MLRVIVNAILILLYATFVGFMFMGIIRKVTARVHRRIGPPIYQPIIDTIKLFGKKENV-- 58
Query: 63 TANFMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVMSSG 122
T +F V L I L + P+G + GD+I+ +LL + ++ MSSG
Sbjct: 59 THGVIFDFGIVFALGATILALMFIPLGSISVLRAYGDLILITFLLEIPMLGIMFAAMSSG 118
Query: 123 SPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELGPM-V 181
+PY IGA R + L++ + + LG FA++ G + + + + W + + +
Sbjct: 119 NPYAGIGAQRALLTLLAIQ--VPLG-FAIVALAEYYGTFSTYEIVMAQQVHGWSIFHLPL 175
Query: 182 WVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEFIA 241
+A + V + E F+I A EI+ G +VE+ G+YLGI+++ +I F A
Sbjct: 176 LLAAIAYDIVLQAMFGKEP----FDIMIAPGEISLGPMVEFGGKYLGILQVQHAIGLF-A 230
Query: 242 ASLVVAVLFPWQVGIPGIQGYIVN-------LLIHTAKVFIVLLVAKTIFRTVTGRLKIT 294
+L + +F I I+N LLI V V ++ TIF R I
Sbjct: 231 ETLFFSNIFLGGAVITTFSSPILNTLATLGVLLIKQLAVLFVAILISTIF----PRFTID 286
Query: 295 QAVNLLWTRVFAASIVGALLLAL 317
QA W + +GA+L +L
Sbjct: 287 QAAKFYWKWPTIIAALGAILASL 309
>pir||E71019 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 PH1450
[similarity] - Pyrococcus horikoshii
>gi|3257874|dbj|BAA30557.1| (AP000006) 309aa long
hypothetical NADH-ubiquinone oxidoreductase subunit
[Pyrococcus horikoshii]
Length = 309
Score = 117 bits (291), Expect = 2e-25
Identities = 92/320 (28%), Positives = 155/320 (47%), Gaps = 16/320 (5%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPILQPFYDFLKLMSKETIIPN 62
++ +I +L+ Y + + +F GI RK VAR+ RRIGPPI QP D +KL +K+ I
Sbjct: 1 MLRVVIDALLILIYATFVGFMFMGIIRKTVARIHRRIGPPIYQPIIDTIKLFAKKENI-- 58
Query: 63 TANFMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVMSSG 122
T ++ V L I L + P+G + GD+I+ +LL + ++ MSSG
Sbjct: 59 THGVIYDFGVVFALGATILALMFIPLGNVSVLRAYGDLILITFLLEIPMLGIMFAAMSSG 118
Query: 123 SPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELGPM-V 181
+PY IGA R + L++ + + LG FA++ G + + + + W + + +
Sbjct: 119 NPYAGIGAQRALLTLLAVQ--VPLG-FAIVTLGEYYGTFSTYEIVMAQQLHGWSIFHLPL 175
Query: 182 WVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEFIA 241
+A + V + E F+I A EI+ G +VE+ G++LGI+++ +I F A
Sbjct: 176 LLAAIAYDIVLQAMFGKEP----FDIMIAPGEISLGPMVEFGGKHLGILQVQHAIGLF-A 230
Query: 242 ASLVVAVLFPWQVGIPGIQGYIVNLL----IHTAKVFIVLLVAKTIFRTVTGRLKITQAV 297
+L + +F + I+N L I K +VL +A T+ R I QA
Sbjct: 231 ETLFFSNIFLGGAAVTAFSSSILNTLATITILLIKQLVVLFIA-IFISTIFPRFTIDQAA 289
Query: 298 NLLWTRVFAASIVGALLLAL 317
W + +GA+L +L
Sbjct: 290 EFYWKWPTIIAALGAILASL 309
>emb|CAA76118.1| (Y16191) echB [Methanosarcina barkeri]
Length = 285
Score = 117 bits (290), Expect = 2e-25
Identities = 80/306 (26%), Positives = 152/306 (49%), Gaps = 37/306 (12%)
Query: 7 LIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPILQPFYDFLKLMSKETIIPNTANF 66
++ +IL+ II L SGIDRK+ AR+Q R+GPP+LQP+YD KL+SK+ ++ N +
Sbjct: 4 ILTIILVLIGAPIIGCLASGIDRKITARLQGRVGPPLLQPYYDVKKLLSKDNMVVNPSQN 63
Query: 67 MFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVMSSGSPYG 126
+ V+ LA+ + + K D ++ I++ T+A L++G MS+GSPY
Sbjct: 64 FY----------VVVYLAFIILSLF-MLVFKQDFLMIIFVYTVASVALVVGGMSTGSPYA 112
Query: 127 RIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN--LWELGPMVWVA 184
RIG++RE+ ++S EP ++L A+ + F L +L + + L P++++A
Sbjct: 113 RIGSSREIMAILSYEPVLILYALAIYL------LTGTFKLSALLDASSPLLMYTPLIFIA 166
Query: 185 GVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEFIAASL 244
++++ + + + + +E+ +G EY G I++A F
Sbjct: 167 MIVVLNIKL----KKSPFDYSTSHHGHQELIKGMTTEYGGPGFATIEIA----HFYEYVF 218
Query: 245 VVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQAVNLLWTRV 304
+ ++F + P ++ +LI +V+++ +T R+ + L WT +
Sbjct: 219 LTGLIFLFWASTP-----VIGVLIGIIAYLLVIVI-----DNITARVYWQWMLKLSWTIL 268
Query: 305 FAASIV 310
S+V
Sbjct: 269 LVISLV 274
>pir||C72281 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 TM1213
[similarity] - Thermotoga maritima (strain MSB8)
>gi|4981766|gb|AAD36288.1|AE001778_9 (AE001778) NADH
dehydrogenase, putative [Thermotoga maritima]
Length = 293
Score = 110 bits (272), Expect = 3e-23
Identities = 86/322 (26%), Positives = 155/322 (47%), Gaps = 32/322 (9%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPILQPFYDFLKLMSKETIIPN 62
+I AL L+L A+ ++SL GI RK+VAR+QRRIGPP Q F D K +SK P
Sbjct: 1 MIKALFNLVL--AFFLVLSL--EGIARKIVARVQRRIGPPWYQNFIDVFKALSKH---PF 53
Query: 63 TANFMFRAAPVLMLTTVIALLAYTPMG---FSPLFATKGDIIVFIYLLTLADFFLILGVM 119
+ ++F ++ L +A P+G ++P F + V YL T+ + +G++
Sbjct: 54 SNGWVFDFGVLMALGGSVATAMLMPLGSLKWTP-FPNTDNFFVITYLFTVGALGMAMGMV 112
Query: 120 SSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELGP 179
SG+P+ IG +R + ++ E ++ + +V++ + + + ++ W L
Sbjct: 113 GSGNPWASIGISRALTQMLGYELPFLVVMASVIFNYKTASIHQLIT----FQGEKWNLFS 168
Query: 180 MVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEF 239
M G I+ ++ + + + F+I A EIA G +VE SG+YLG++++ F
Sbjct: 169 M--PLGAIVAFISLIGMMGKKP---FDIAIAPAEIASGPMVELSGKYLGLLQIMHDFSLF 223
Query: 240 IAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQAVNL 299
+ SL V V +G + ++V F+ + V + +V R +I Q +
Sbjct: 224 VEISLFVNVF----LGGGSLGWFLVK--------FVTVWVVAVLISSVLPRFRIEQMLKF 271
Query: 300 LWTRVFAASIVGALLLALGVMI 321
W + + AL + LG+ +
Sbjct: 272 YWGVPLGLAFLNALFVVLGLTL 293
>pir||D72620 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 PAB1393
[similarity] - Aeropyrum pernix (strain K1)
>gi|5105104|dbj|BAA80418.1| (AP000061) 383aa long
hypothetical NADH dehydrogenase (ubiquinone) chain 1
[Aeropyrum pernix]
Length = 383
Score = 108 bits (267), Expect = 1e-22
Identities = 94/337 (27%), Positives = 162/337 (47%), Gaps = 49/337 (14%)
Query: 10 LILLYAYVSIISLLFSGIDRKLVARMQRRIGP--------PILQPFYDFLKLMSKETIIP 61
LIL + +I+++ +RK AR+QRRIGP +L D ++ M ++ IIP
Sbjct: 28 LILGFGGALLIAIVAVWFERKAAARVQRRIGPYWASPRLGGLLHLVADMMRYMFQQVIIP 87
Query: 62 NTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLF------ATKGDIIVFIYLLTLADFFL 114
T + F F AP++ + I A P+ +P + + +++ + + TL FL
Sbjct: 88 RTVDYFPFLVAPIVGMAVSILPFAVVPLTANPSYWPLPPGLMEYSLLLALAISTLPPIFL 147
Query: 115 ILGVMSSGSPYGRIGAAREVAMLISRE---------PAMMLGVFAVMWGISKLGVQKPFS 165
I+ ++ +P+ +G RE ++++ E PA+ +G F ++ + G K F
Sbjct: 148 IVAGWAANNPFTIVGGVREAFIILAYELIAILSLLAPAITVGSFNIVEIVQAQGFFKWFI 207
Query: 166 LGSLYEHNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGR 225
+ L P+ ++A VI I + S F IPE+E E+ G EYSG
Sbjct: 208 I----------LNPLAFLAAVIAIAMSTSAFP-------FEIPESEPEVVAGPFTEYSG- 249
Query: 226 YLGIIKLAESIKEFIAASLV--VAVLFPWQVGIPG---IQGYIVNLLIHTAKVFIVLLVA 280
L + + + A SL+ + +L W +PG + GY++ L+ AK +V L A
Sbjct: 250 ILYALNMGGAYMRRFAFSLIASLVLLGGWYPVVPGEGVVMGYLLPSLVVVAKAALVTL-A 308
Query: 281 KTIFRTVTGRLKITQAVNLLWTRVFAASIVGALLLAL 317
+ R V GR ++ QA++L W V +++ A+LLAL
Sbjct: 309 ISFLRAVYGRYRLDQALDLAWRLVLPLTLL-AILLAL 344
>gi|9695396 NADH dehydrogenase subunit 1 [Phytophthora infestans]
>gi|6692648|gb|AAF24791.1|U17009_24 (U17009) NADH
dehydrogenase subunit 1 [Phytophthora infestans]
Length = 326
Score = 104 bits (256), Expect = 2e-21
Identities = 98/340 (28%), Positives = 162/340 (46%), Gaps = 41/340 (12%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSK 56
+IY ++ ++L + I F+ ++RK++A +QRR GP + LQP D LKL K
Sbjct: 1 MIYTILKFLILVLPLLIAVAYFTLVERKVLASIQRRRGPNVVGTFGLLQPLADGLKLFVK 60
Query: 57 ETIIPNTAN-FMFRAAPVLMLTTVIALLAYT--PMGFSPLFATKG-DIIVFIYLLTLADF 112
ETI+P+ A+ +F AP+L ++LL++T P+GF F I+ + + +L +
Sbjct: 61 ETILPSNADVILFIFAPILAF--FLSLLSWTVIPLGFGMFFTELNIGILYLLAISSLGVY 118
Query: 113 FLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEH 172
+I+G SS S Y +GA R A +IS E + + +V+ L + S+ L +
Sbjct: 119 GIIIGGWSSNSKYSFLGALRSTAQMISYELTIGFSILSVIICAKSLNL---ISI-VLAQK 174
Query: 173 NLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKL 232
+W P+ I + F+S LA E F++PEAE E+ G VEYS + L
Sbjct: 175 TVWYCFPLF----PIFLIFFISCLA-ETNRHPFDLPEAEAELVSGYNVEYSAMGFALFFL 229
Query: 233 AESIKEFIAASLVVAVL-------FPWQVG----IPGIQGYIVNLLIHTAKVFIVLLVAK 281
E + +SL + FP+ + +PG + + + F+VL V
Sbjct: 230 GEYANMLLMSSLTTILFLGGWLAPFPFSIKFINFLPGSFWFSIKVCF-----FVVLFV-- 282
Query: 282 TIFRTVTGRLKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ R V R + Q + L W +VF + L G++I
Sbjct: 283 -VARAVLPRYRYDQLMRLGW-KVFLPFTLSWFLYTAGILI 320
>sp|P48899|NU1M_CYACA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|2147754|pir||S62765 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - red
alga (Cyanidium caldarium) mitochondrion
>gi|758181|emb|CAA88775.1| (Z48930) NADH dehydrogenase
subunit 1 [Cyanidium caldarium]
Length = 344
Score = 103 bits (254), Expect = 3e-21
Identities = 99/336 (29%), Positives = 163/336 (48%), Gaps = 38/336 (11%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
+K + +I LI+ AY+++I +RK++ +Q+R GP I LQP D LKL+
Sbjct: 25 IKSLSYIIPLIIAIAYLTLI-------ERKIIGSIQKRKGPNIVGIFGLLQPIADGLKLL 77
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLAD-- 111
KET +PN+AN F+F AP+ LT +AL A+ M F+ + I +YLL ++
Sbjct: 78 LKETSLPNSANIFIFIIAPI--LTFFLALCAWAIMPFNEINFYSNLNIGILYLLAISSLG 135
Query: 112 -FFLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY 170
+ +I+ +S S Y +G R A +IS E ++ L + V+ L +++ L
Sbjct: 136 VYGIIISGWASNSKYAFLGGLRSAAQIISYEVSIGLIIINVLLCSGTLNLKEIV----LA 191
Query: 171 EHNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+ N+W + P+ + + F+S LA E F++PEAE E+ G VEYS +
Sbjct: 192 QQNIWYIFPLF----PLFLMFFISSLA-ETNRSPFDLPEAEAELVAGYNVEYSAMGFALF 246
Query: 231 KLAESIKEFIAASLVVAVLF--PWQVGIPGIQGYIVNLL---IHTAKVFIVLLVAKTIFR 285
L E I S V +LF W +P ++ N + I I++LV R
Sbjct: 247 FLGE-YTNIILISAVSTILFLAGW---LPPFDIFLFNWIPNSIWFGFKTIIILVLFIWVR 302
Query: 286 TVTGRLKITQAVNLLWTRVFAASIVGALLLALGVMI 321
R + Q + L W ++F + L+L G+++
Sbjct: 303 AAFPRYRYDQLIQLGW-KIFLPLSLAWLMLTSGILL 337
>gi|11465632 NADH dehydrogenase subunit 1 [Porphyra purpurea]
>gi|7431949|pir||T11227 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - red alga (Porphyra purpurea)
mitochondrion >gi|4106939|gb|AAD03106.1| (AF114794) NADH
dehydrogenase subunit 1 [Porphyra purpurea]
Length = 328
Score = 103 bits (254), Expect = 3e-21
Identities = 97/331 (29%), Positives = 161/331 (48%), Gaps = 30/331 (9%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
+K+I +I L++ AY+++ +RK++A MQRR GP + LQP D LKL
Sbjct: 10 IKIITIIIPLLIAVAYMTLA-------ERKVMAAMQRRKGPNVVGIFGLLQPLADGLKLF 62
Query: 55 SKETIIPNTANF-MFRAAPVLMLTTVIALLAY--TPMGFSPLFATKGDIIVFIYLL-TLA 110
SKET++P++AN +F AAPV LT ++A+LA+ P+ +F+ +++I + +L
Sbjct: 63 SKETVLPSSANISIFLAAPV--LTFLLAMLAWCVLPLDEGKVFSDLNVGVLYILAISSLG 120
Query: 111 DFFLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY 170
+ +I SS S Y +GA R A ++S E ++ L + V+ L + + L
Sbjct: 121 VYGIITAGWSSNSKYAFLGALRSAAQMVSYEVSIGLILINVLLCAGTLNLTQIV----LA 176
Query: 171 EHNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+ N+W + P+ + I ++S LA E F++PEAE E+ G VEYS +
Sbjct: 177 QQNIWYIVPLF----PVFIMFYISILA-ETNRAPFDLPEAEAELVAGYNVEYSAMGFALF 231
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIPGIQG-YIVNLLIHTAKVFIVLLVAKTIFRTVTG 289
L E + SL F + + I Y + +I +LL R
Sbjct: 232 FLGEYANMILMCSLTTIFFFGGWLPLFNIPPFYWIPPVIWFGLKTTLLLFGFIWVRAAFP 291
Query: 290 RLKITQAVNLLWTRVFAASIVGALLLALGVM 320
R + Q + L W ++F +G +L GV+
Sbjct: 292 RYRYDQLMRLGW-KIFLPLSLGWVLFVSGVL 321
>gb|AAK41289.1| Formate hydrogenlyase subunit 4 (hycD) [Sulfolobus solfataricus]
Length = 320
Score = 101 bits (248), Expect = 2e-20
Identities = 86/317 (27%), Positives = 159/317 (50%), Gaps = 31/317 (9%)
Query: 17 VSIISLLFSGIDRKLVARMQRRIGPPILQPFYDFLKLMSKETIIPNTANFMFRAAP---- 72
V ++S L+ GI + A ++ R GP +LQP+YD +KL+ KET+I N + +F AP
Sbjct: 22 VILLSPLYQGIYDRGKAIIEGRKGPSVLQPYYDIIKLLRKETVISNNSLSLFVYAPYIVF 81
Query: 73 --VLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVMSSGSPYGRIGA 130
L+++ VI ++ P+ +P G ++F +LA F I+ + SGS + +G
Sbjct: 82 GIYLLISFVIPVVYPVPILLTPTVDFLGGALLF----SLAAFIKIIASLESGSNFVALGV 137
Query: 131 AREVAMLISREPAMMLGVFAVMWGISKL-GVQKPFSLGSLYEHNLWELGPMVWVAGVILI 189
+R ++ E ++ V +G++ + G P+ +L + + + I
Sbjct: 138 SRILSFTFLSEATLI----TVFFGVALITGTNNPYVTLDYVSQSLSHYFQLDHI--FVSI 191
Query: 190 YVFMSWLASEIEVGFFNI--PEAEE--EIAEGTLVEYSGRYLGIIKLAESIKEFIAASLV 245
FM WL E G + P E I +G L EYSG+ L I+K IK+++ S++
Sbjct: 192 SFFMLWL---FETGKLPVESPGLSEMGMIDDGVLYEYSGKLLAILKWGSYIKQYLLGSVL 248
Query: 246 VAV-LFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQAVNLLWTRV 304
+ V +FPW + + GI G ++++ + K +++L++ I T +L++ + + L
Sbjct: 249 LNVFIFPWFLQV-GIIGSLIDIAVMFGK-WLLLILISVIINTTLAKLRLFKVQDYL---- 302
Query: 305 FAASIVGALLLALGVMI 321
A ++ L L L V++
Sbjct: 303 AVAFLLSLLSLTLTVLL 319
>gi|11467260 NADH dehydrogenase ND1 [Zea mays] >gi|400636|sp|P25706|NU1C_MAIZE
NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1, CHLOROPLAST
>gi|320098|pir||JQ1671 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - maize chloroplast
>gi|12420|emb|CAA44228.1| (X62370) NADH Dehydrogenase
subunit A [Zea mays] >gi|902289|emb|CAA60353.1|
(X86563) NADH dehydrogenase ND1 [Zea mays]
Length = 362
Score = 99.1 bits (243), Expect = 6e-20
Identities = 92/343 (26%), Positives = 156/343 (44%), Gaps = 40/343 (11%)
Query: 2 KVIYALIGLILLYAY---VSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLK 52
K IY LI ++ ++A ++I L+ ++R++ A +Q+RIGP +LQ D K
Sbjct: 21 KEIYGLIWILPIFALLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTK 80
Query: 53 LMSKETIIPNTANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKG-DIIVFIYLLTLA 110
L+ KE I+P+ + +F P + + +++ P+G+ + A + ++I + ++A
Sbjct: 81 LLLKEDILPSRGDIPLFSIGPSIAVISILLSFLVIPLGYRFVLADLSIGVFLWIAISSIA 140
Query: 111 DFFLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMW---GISKLGVQKPFSLG 167
L++ SS + Y G R A IS E + V A+ S + + + S
Sbjct: 141 PIGLLMAGYSSNNKYSFSGGLRAAAQSISYEIPLTFCVLAISLLSNSSSTVDIVEAQSKY 200
Query: 168 SLYEHNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYL 227
+ NLW I VF+ +E E F++PEAEEE+ G EYSG
Sbjct: 201 GFFGWNLWRQP--------IGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKY 252
Query: 228 GIIKLAESIKEFIAASLVVAVLF--PWQVGIP--------------GIQGYIVNLLIHTA 271
G+ L S + +SL V VL+ W IP GI ++ + I
Sbjct: 253 GLFYLV-SYLNLLVSSLFVTVLYLGGWNFSIPYISFFGFFQMNKIIGILEMVIGIFITLT 311
Query: 272 KVFIVLLVAKTIFRTVTGRLKITQAVNLLWTRVFAASIVGALL 314
K ++ L ++ TI R R+++ Q +NL W + S+ LL
Sbjct: 312 KAYLFLFISITI-RWTLPRMRMDQLLNLGWKFLLPISLGNLLL 353
>gi|11497586 NADH dehydrogenase ND1 subunit [Spinacia oleracea]
>gi|7636167|emb|CAB88789.1| (AJ400848) NADH
dehydrogenase ND1 subunit [Spinacia oleracea]
Length = 365
Score = 98.3 bits (241), Expect = 1e-19
Identities = 91/337 (27%), Positives = 153/337 (45%), Gaps = 31/337 (9%)
Query: 2 KVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLMS 55
+ I+ L +++L ++I L+ ++R++ A +Q+RIGP ILQ D KL+
Sbjct: 27 ETIWMLFPILILVLGITIGVLVIVWLEREISASIQQRIGPEYAGPLGILQALADGTKLLF 86
Query: 56 KETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKG-DIIVFIYLLTLADFF 113
KE ++P+ + ++F P + + +++ P G + A + ++I + ++A
Sbjct: 87 KENLLPSRGDTYLFSIGPSIAVISILLGYLIIPFGSRLVLADLSIGVFLWIAVSSIAPIG 146
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
L++ S + Y +G R A IS E + L V ++ + S Y
Sbjct: 147 LLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSSSTVDIVEAQSKYGFW 206
Query: 174 LWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLA 233
W L W + I +S LA E E F++PEAEEE+ G EYSG G+ +A
Sbjct: 207 GWNL----WRQPIGFIVFIISSLA-ECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVA 261
Query: 234 ESIKEFIAASLVVAVLF--PWQVGIP--------------GIQGYIVNLLIHTAKVFIVL 277
S + +SL V VL+ W + IP G+ G + + I AK F+ L
Sbjct: 262 -SYLNLLISSLFVTVLYLGGWNLSIPYIFISEFFEINKIDGVFGTTIGIFITLAKTFLFL 320
Query: 278 LVAKTIFRTVTGRLKITQAVNLLWTRVFAASIVGALL 314
+ T R RL++ Q +NL W + S+ LL
Sbjct: 321 FIPITT-RWTLPRLRMDQLLNLGWKFLLPISLGNLLL 356
>pir||D70749 probable hycD protein - Mycobacterium tuberculosis (strain H37RV)
>gi|1405754|emb|CAA98920.1| (Z74410) hycD [Mycobacterium
tuberculosis]
Length = 316
Score = 97.5 bits (239), Expect = 2e-19
Identities = 80/302 (26%), Positives = 142/302 (46%), Gaps = 24/302 (7%)
Query: 23 LFSGIDRKLVARMQRRIGPPILQPFYDFLKLMSKETIIPNTANFMFRAAPVLMLTTVIAL 82
L G+ R++ AR + R G +LQP+ D LK + K+ I P +F AAPV++ T + +
Sbjct: 19 LVIGMTRQVRARWEGRAGAGLLQPWRDLLKQLGKQQITPAGTTIVFAAAPVIVAGTTLLI 78
Query: 83 LAYTPM--GFSPLFATKGDIIVFIYLLTLADFFLILGVMSSGSPYGRIGAAREVAMLISR 140
A P+ SPL D+ + LL L L L + +G+ +G +GA+RE+ +
Sbjct: 79 AAIAPLVATGSPL-DPSADLFAVVGLLFLGTVALTLAGIDTGTSFGGMGASREITIAALV 137
Query: 141 EPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELGPMVWVAGVILIYVFMSWLASEI 200
EP ++L VFA+ +LG+L + G +V +AGV+ + + +E
Sbjct: 138 EPTILLAVFALSIPAGSA------NLGALVASTIDHPGHVVSLAGVLAFVALVIVIVAET 191
Query: 201 EVGFFNIPEAEEEIA---EGTLVEYSGRYLGIIKLAESIKEFIAASLVVAVLFPWQV--G 255
+ P E+ E ++EY+G L +++ A ++ + +L+ + PW +
Sbjct: 192 GRLPVDNPATHLELTMVHEAMVLEYAGPRLALVEWAAGMRLTVLLALLANLFLPWGIAGA 251
Query: 256 IPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQAVNLLWTRVFAASIVGALLL 315
P + ++ AKV I+ ++ T F +L++ + LL G+ LL
Sbjct: 252 APTALDVLTGVVAVAAKVAILAVLLAT-FEVFLAKLRLFRVPELL---------AGSFLL 301
Query: 316 AL 317
AL
Sbjct: 302 AL 303
>gi|7524983 NADH dehydrogenase subunit 1 [Dictyostelium discoideum]
>gi|3122447|sp|Q37313|NU1M_DICDI NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|2130173|pir||S68157 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - slime
mold (Dictyostelium discoideum) mitochondrion
>gi|699593|dbj|BAA03935.1| (D16466) NADH dehydrogenase
subunit 1 [Dictyostelium discoideum]
>gi|4958886|dbj|BAA78063.1| (AB000109) NADH
dehydrogenase subunit 1 [Dictyostelium discoideum]
Length = 317
Score = 97.5 bits (239), Expect = 2e-19
Identities = 89/328 (27%), Positives = 159/328 (48%), Gaps = 38/328 (11%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
+K + +IGL++ A+ +++ +RK++A MQ+R GP + LQP D LKL+
Sbjct: 13 LKSLIVIIGLLIGVAFATLL-------ERKVMAAMQKRRGPNVVGFVGLLQPLADGLKLV 65
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLL-TLADF 112
KETIIP A+ ++ AP+L T I L + +G +FA+ ++FI + ++ +
Sbjct: 66 LKETIIPIVADKLIYAIAPILTFTISIVLWSVIAVGVQSVFASINSGVIFILAISSIGVY 125
Query: 113 FLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEH 172
+IL +S S Y +G R A ++S E A+ L + +++ + +Q+ +
Sbjct: 126 GIILAGWASNSKYAFLGGLRSAAQMVSYEVALGLIILSIITYAGTVNLQEIME----NQE 181
Query: 173 NLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKL 232
+W + P+ + G +L ++ +E F++PEAE E+ G VEYS + L
Sbjct: 182 KVWFIIPL--LPGFLLAFIS---ALTETNRPPFDLPEAEAELVSGYNVEYSSTGFALFFL 236
Query: 233 AESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLK 292
E I S++++V F G IV+ I A + +L + R R +
Sbjct: 237 GE-YANIILMSVLLSVFF---------LGGIVSNKILGAMKGVGMLCSFIWVRATLPRYR 286
Query: 293 ITQAVNLLWTRVFAASIVGALLLALGVM 320
Q + L W + + ALL+ +GV+
Sbjct: 287 YDQLMYLGWKSL----LPFALLIYIGVI 310
>emb|CAB67225.1| (AJ271079) NADH-plastoquinone oxidoreductase subunit 1 [Oenothera
elata subsp. hookeri]
Length = 363
Score = 97.1 bits (238), Expect = 2e-19
Identities = 93/341 (27%), Positives = 165/341 (48%), Gaps = 41/341 (12%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLMSK 56
+I+ L+ ++ L +++ L+ ++R++ A +Q+RIGP ILQP D +KL+ K
Sbjct: 26 IIWMLVPILSLVLGITLGVLVIVWLEREISAGIQQRIGPEYAGPMGILQPLADGIKLIFK 85
Query: 57 ETIIPNTANF-MFRAAPVLMLTTVIALLAYTPMGFSP-LFATKGDIIVFIYLL--TLADF 112
E ++P+ + +F P + + ++ LL+Y+ + FS L + +I VF+++ ++A
Sbjct: 86 ENLLPSRGDTRLFSIGPSIAVISI--LLSYSVIPFSSHLVLSDLNIGVFLWIAVSSIAPI 143
Query: 113 FLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMW---GISKLGVQKPFSLGSL 169
L++ S + Y +G R A IS E + L + ++ +S + + + S L
Sbjct: 144 GLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCLLSISLLSNSLSTVDIVEAQSKYGL 203
Query: 170 YEHNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGI 229
+ NLW I VF+ +E E F++PEAEEE+ G EYSG G+
Sbjct: 204 WGWNLWRQP--------IGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGL 255
Query: 230 IKLAESIKEFIAASLVVAVLF--PWQVGI-----PG---------IQGYIVNLLIHTAKV 273
+A S + +SL V VL+ W + I PG + G + + AK
Sbjct: 256 FYVA-SYLNLLVSSLFVTVLYLGGWNISISYIFVPGLFEITKVGRVFGTTIGIFTTLAKT 314
Query: 274 FIVLLVAKTIFRTVTGRLKITQAVNLLWTRVFAASIVGALL 314
++ L ++ T R RL++ Q +NL W + S+ LL
Sbjct: 315 YLFLFISITT-RWTLPRLRMDQLLNLGWKFLLPISLGNLLL 354
>gb|AAF65735.1|AF228525_5 (AF228525) F420H2 dehydrogenase subunit FpoH [Methanosarcina mazei]
Length = 347
Score = 97.1 bits (238), Expect = 2e-19
Identities = 96/340 (28%), Positives = 164/340 (48%), Gaps = 32/340 (9%)
Query: 4 IYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLMSKE 57
I +GL+L+ A + + + I+RKL A +Q R GP +LQ D +KL +KE
Sbjct: 16 IRGTVGLVLVGA-IFLGGMAAVWIERKLSADIQLRYGPSRVGKFGLLQLVADAIKLFTKE 74
Query: 58 TIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMG-------FSPLFATKGDI-IVFIYLLT 108
+ P A+ F++ APV MLT++ +L P+G PL T+ DI I+FI ++
Sbjct: 75 DVRPGNADRFLYDNAPVFMLTSLFLMLVAIPVGAVFIDGNLYPLAVTEMDISILFIEAVS 134
Query: 109 LADFF-LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLG 167
+ F + + S + Y +GA R A +I E + + + +V L + S
Sbjct: 135 AINIFGIFMAAYGSNNKYSLLGAFRNFARMIGYEVPLGIAIVSVAVMTGSLNIIDITSAQ 194
Query: 168 SLYEHNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYL 227
+ N++ L P+ +V VF L +++ F+ E+EEE+ G + EY+G
Sbjct: 195 GSFVWNIF-LQPIGFV-------VFFIALMADLGRLPFDQNESEEELVAGWVTEYTGMRF 246
Query: 228 GIIKLAESIKEFIAASLVVAVLF--PWQVGIPGIQGYIVNLLIHTAKVFI-VLLVAKTI- 283
G++ AE + I S +VA+LF W V ++ L+ T + + +LV TI
Sbjct: 247 GLVFFAEYM-HMILGSFLVALLFLGGWNVPAFVANNAVLGLIAPTGILLLKTVLVLMTII 305
Query: 284 -FRTVTGRLKITQAVNLLWTRVFAASIVG-ALLLALGVMI 321
R R +I Q V++ W ++ S++ A + LG+ +
Sbjct: 306 GMRWAVPRFRIDQVVDMSWKKLLPLSLLNLAWAVGLGLYL 345
>gi|11467140 nad1 [Marchantia polymorpha] >gi|462756|sp|P26845|NU1M_MARPO
NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1
>gi|282795|pir||S25993 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - liverwort (Marchantia polymorpha)
mitochondrion >gi|404357|gb|AAB27398.1| NADH
dehydrogenase subunit 1=nad1 gene product [Marchantia
polymorpha=liverworts, Peptide Mitochondrial, 328 aa]
>gi|786224|gb|AAC09438.1| (M68929) nad1 [Marchantia
polymorpha]
Length = 328
Score = 96.7 bits (237), Expect = 3e-19
Identities = 95/331 (28%), Positives = 158/331 (47%), Gaps = 30/331 (9%)
Query: 2 KVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMS 55
K++ +I L+L A++ + +RK++A MQRR GP + LQP D LKLM
Sbjct: 11 KILGIIIPLLLGVAFLVLA-------ERKVMASMQRRKGPNVVGILGLLQPLADGLKLMI 63
Query: 56 KETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLL-TLADFF 113
KE I+P++AN F+F APVL T + A P + +F+ +++++ + +L +
Sbjct: 64 KEPILPSSANIFIFLMAPVLTFTLALCAWAVIPFDYGMVFSDLNIGVLYLFAISSLGVYG 123
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+I +S S Y +GA R A ++S E ++ L + +V+ FS L +
Sbjct: 124 IITAGWASNSKYAFLGALRSAAQMVSYEVSIGLLLISVILCAGSCN----FSEIVLAQTR 179
Query: 174 LWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLA 233
+W + P+ + + F+S LA E F++PEAE E+ G VEYS + L
Sbjct: 180 IWFVFPLF----PVFLMFFISCLA-ETNRAPFDLPEAEAELVAGYNVEYSSMGFALFFLG 234
Query: 234 ESIKEFIAASL-VVAVLFPWQ--VGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
E + +SL + L W + IP Q I + + KV L V + R R
Sbjct: 235 EYANMILMSSLCTLLFLGGWLPILDIPIFQ-VIPGSIWFSIKVLFFLFVYIWV-RAAFPR 292
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ Q + L W +VF + ++ GV++
Sbjct: 293 YRYDQLMRLGW-KVFLPLSLAWVVFVSGVLV 322
>gi|11466020 NADH dehydrogenase ND1 subunit [Nicotiana tabacum]
>gi|2924282|emb|CAA77435.1| (Z00044) NADH dehydrogenase
ND1 subunit [Nicotiana tabacum]
Length = 363
Score = 96.7 bits (237), Expect = 3e-19
Identities = 93/336 (27%), Positives = 152/336 (44%), Gaps = 31/336 (9%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLMSK 56
+I+ L ++ L ++I L+ ++R++ A +Q+RIGP ILQ D KL+ K
Sbjct: 26 IIWMLFPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLLK 85
Query: 57 ETIIPNTANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKG-DIIVFIYLLTLADFFL 114
E +IP+T + +F P + + ++ + P G + A + +I + ++A L
Sbjct: 86 ENLIPSTGDTRLFSIGPSIAVISIFLSYSVIPFGDHLVLADLSIGVFFWIAISSIAPVGL 145
Query: 115 ILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNL 174
++ S + Y +G R A IS E + L V ++ + L S Y
Sbjct: 146 LMSGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISLLSNSLSTVDIVEAQSKYGFWG 205
Query: 175 WELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAE 234
W L W + I +S LA E E F++PEAEEE+ G EYSG G+ +A
Sbjct: 206 WNL----WRQPIGFIVFLISSLA-ECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYIA- 259
Query: 235 SIKEFIAASLVVAVLF--PWQVGIP--------GIQ------GYIVNLLIHTAKVFIVLL 278
S + +SL V VL+ W + IP GI G ++ + I AK ++ L
Sbjct: 260 SYLNLLVSSLFVTVLYLGGWNLSIPYIFVPELFGINKRGKVFGTLIGIFITLAKTYLFLF 319
Query: 279 VAKTIFRTVTGRLKITQAVNLLWTRVFAASIVGALL 314
+ R RL++ Q +NL W + S+ LL
Sbjct: 320 I-PIATRWTLPRLRMDQLLNLGWKFLLPISLGNLLL 354
>emb|CAB44668.1| (AJ242867) NDH-A protein [Anabaena PCC7120]
Length = 372
Score = 96.7 bits (237), Expect = 3e-19
Identities = 93/332 (28%), Positives = 154/332 (46%), Gaps = 44/332 (13%)
Query: 2 KVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLMS 55
K I+ + +IL+ ++ L+ ++RK+ A Q+RIGP +L P D LKL+
Sbjct: 26 KAIWMPLPMILMLIGATVGVLVCVWLERKISAAAQQRIGPEYIGPLGLLAPVADGLKLVF 85
Query: 56 KETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGD-IIVFIYLLTLADFF 113
KE I+P A+ ++F P+L++ V P G + + G I ++I L ++
Sbjct: 86 KEDIVPAQADPWLFTLGPILVVLPVFLSYLIVPFGQNIVITNVGTGIFLWIALSSIQPIG 145
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMW---GISKLGVQKPFSLGSLY 170
L++ SS + Y +G R A IS E + L V A++ +S + + S +
Sbjct: 146 LLMAGYSSNNKYSLLGGLRAAAQSISYEIPLALSVLAIVMMSNSLSTVDIVNQQSGYGIL 205
Query: 171 EHNLWE--LGPMV-WVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYL 227
N+W LG M+ W+A + +E E F++PEAEEE+ G EYSG
Sbjct: 206 GWNIWRQPLGFMIFWIAAL-----------AECERLPFDLPEAEEELVAGYQTEYSGMKF 254
Query: 228 GIIKLAESIKEFIAASLVVAVLF--PWQVGIP--------GIQGYIVNLLIHTAKVFIVL 277
+ L+ S I ++L+VAVL+ W IP G+ L + +A + I +
Sbjct: 255 ALFYLS-SYVNLILSALLVAVLYLGGWDFPIPINVLANLVGVSEANPVLQVVSAALGITM 313
Query: 278 LVAKTIF--------RTVTGRLKITQAVNLLW 301
+ K F R R++I Q ++L W
Sbjct: 314 TLVKAYFLVFIAILLRWTVPRVRIDQLLDLGW 345
>pir||D75387 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 DR1498
[similarity] - Deinococcus radiodurans (strain R1)
>gi|6459260|gb|AAF11065.1|AE001994_1 (AE001994) NADH
dehydrogenase I, H subunit [Deinococcus radiodurans]
Length = 397
Score = 96.7 bits (237), Expect = 3e-19
Identities = 89/342 (26%), Positives = 152/342 (44%), Gaps = 45/342 (13%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLM 54
+K + + L+ +AY+++I +R+L+ R+Q R GP +LQP D +K +
Sbjct: 13 LKAVLVALALLTAFAYMTLI-------ERRLLGRIQLRPGPNRVGPMGLLQPLADAIKSI 65
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGF-SPLFATK-------GDIIVFIY 105
KE + A+ ++ AP+L + + P G LF T I+ +
Sbjct: 66 FKEDVTVTLADKLVYTLAPILAIGMALTAFGGIPAGPPGSLFGTDPWVYNLDAGILALLA 125
Query: 106 LLTLADFFLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFS 165
L ++ + + LG +SGS Y +G+ R A +IS E M G+S LG+
Sbjct: 126 LTSMGVYGIFLGGWASGSKYPMLGSLRSSAQMISYELGM---------GLSVLGLLMLVG 176
Query: 166 LGSLYEHNLWELGPMV--WVA--GVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVE 221
+ + W+ GP W+ V +FM +E+ F++PEAE+E+ G L E
Sbjct: 177 STNFLDIVEWQAGPRGHGWLILFQVFAFALFMVSSFAEVNRTPFDLPEAEQELVAGYLTE 236
Query: 222 YSGRYLGIIKLAESIKEFIAASLVVAVLFPWQVG-------IPGIQGYIVNLLIHTAKVF 274
YS + ++AE + A++L+ + F G IPGI + + LI F
Sbjct: 237 YSSIKWALFQMAEYVNIMTASALMSTLFFGGYRGPTFLEPLIPGISSWPLVWLIAKIAFF 296
Query: 275 IVLLVAKTIFRTVTGRLKITQAVNLLWTRVFAASIVGALLLA 316
+ L + R RL+ Q + L W ++V L++A
Sbjct: 297 MFLFI---WVRATLPRLRYDQLMRLGWKLTLPLALVNTLVVA 335
>gi|11466757 ndh1 [Marchantia polymorpha] >gi|128619|sp|P06255|NU1C_MARPO
NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1, CHLOROPLAST
>gi|66138|pir||DELVN1 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - liverwort (Marchantia polymorpha)
chloroplast >gi|456521|emb|CAA28139.1| (X04465) ndh1
[Marchantia polymorpha]
Length = 368
Score = 96.3 bits (236), Expect = 4e-19
Identities = 88/339 (25%), Positives = 150/339 (43%), Gaps = 35/339 (10%)
Query: 4 IYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLMSKE 57
++ + +++L V+I L+ ++RK+ A +Q+RIGP I+Q D +KL KE
Sbjct: 28 LWIIFSILILMLGVTIGVLVLVWLERKISAAIQQRIGPEYAGPLGIIQALADGIKLFLKE 87
Query: 58 TIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKG-DIIVFIYLLTLADFFLI 115
I+P + ++F P+L+L V P ++ + A + +I + ++ L+
Sbjct: 88 DIVPAQGDVWLFNIGPILVLIPVFLSYLVIPFEYNVILANFSIGVFFWIAVSSVVPLGLL 147
Query: 116 LGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLW 175
+ S + Y +G R A IS E + L V ++ + L S Y W
Sbjct: 148 MAGYGSNNKYSFLGGLRAAAQSISYEIPLALSVLSIALLSNSLSTVDIVEAQSKYGFLSW 207
Query: 176 ELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAES 235
L W + I F++ LA E E F++PEAEEE+ G EYSG LA S
Sbjct: 208 NL----WRQPIGFIVFFIASLA-ECERLPFDLPEAEEELVAGYQTEYSGMKFAFFYLA-S 261
Query: 236 IKEFIAASLVVAVL-----------------FPWQV---GIPGIQGYIVNLLIHTAKVFI 275
+ +SL V +L F W + GI + I+ ++I K ++
Sbjct: 262 YLNLLVSSLFVTILYLGGWHFSIPFFSLFKNFEWNLMSNGISEVISIIIGIVITLVKSYL 321
Query: 276 VLLVAKTIFRTVTGRLKITQAVNLLWTRVFAASIVGALL 314
L ++ + R R++I Q +NL W + ++ LL
Sbjct: 322 FLFIS-IMTRWTLPRIRIDQLLNLGWKFLLPIALGNLLL 359
>gi|11466852 NADH dehydrogenase ND1 [Oryza sativa]
>gi|128620|sp|P12124|NU1C_ORYSA NADH-PLASTOQUINONE
OXIDOREDUCTASE CHAIN 1, CHLOROPLAST
>gi|66139|pir||DERZN1 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - rice chloroplast
>gi|669087|emb|CAA33910.1| (X15901) NADH dehydrogenase
ND1 [Oryza sativa] >gi|226676|prf||1603356DD NADH
dehydrogenase ND1 [Oryza sativa]
Length = 362
Score = 95.6 bits (234), Expect = 7e-19
Identities = 91/344 (26%), Positives = 156/344 (44%), Gaps = 40/344 (11%)
Query: 1 MKVIYALIGLI---LLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFL 51
+K +Y LI ++ L ++I L+ ++R++ A +Q+RIGP +LQ D
Sbjct: 20 LKEVYGLIWILPILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGT 79
Query: 52 KLMSKETIIPNTANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKG-DIIVFIYLLTL 109
KL+ KE I+P+ + +F P + + +++ P+G+ + A + ++I + ++
Sbjct: 80 KLLFKEDILPSRGDIPLFSIGPSIAVISILLSFLVIPLGYRFVLADLSIGVFLWIAISSI 139
Query: 110 ADFFLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMW---GISKLGVQKPFSL 166
A L++ SS + Y G R A IS E + V A+ S + + + S
Sbjct: 140 APIGLLMAGYSSNNKYSFSGGLRAAAQSISYEIPLTFCVLAISLLSNSSSTVDIVEAQSK 199
Query: 167 GSLYEHNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRY 226
+ NLW I VF+ +E E F++PEAEEE+ G EYSG
Sbjct: 200 YGFFGWNLWRQP--------IGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIK 251
Query: 227 LGIIKLAESIKEFIAASLVVAVLF--PWQVGIP--------------GIQGYIVNLLIHT 270
G+ L S + +SL V VL+ W + IP GI +++ I
Sbjct: 252 YGLFYLV-SYLNLLVSSLFVTVLYLGGWNLSIPYISFFGFFQMNKMVGILEMTMSIFITL 310
Query: 271 AKVFIVLLVAKTIFRTVTGRLKITQAVNLLWTRVFAASIVGALL 314
K ++ L ++ TI R R+++ Q +NL W + S+ LL
Sbjct: 311 TKAYLFLFISITI-RWTLPRMRMDQLLNLGWKFLLPISLGNLLL 353
>pir||A71839 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO8 -
Helicobacter pylori (strain J99)
>gi|4155778|gb|AAD06754.1| (AE001545) NADH
oxidoreductase I [Helicobacter pylori J99]
Length = 329
Score = 95.2 bits (233), Expect = 1e-18
Identities = 98/342 (28%), Positives = 161/342 (46%), Gaps = 40/342 (11%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPILQPF------YDFLKLMSK 56
+I LI +++L A S + + I+RK++A QRR+GP + PF D +KL +K
Sbjct: 5 IIETLIKILILVAVFSALGGFATYIERKVLAYFQRRLGPCYVGPFGLLQVAADGIKLFTK 64
Query: 57 ETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKG--------DI-IVFIYL 106
E IIP AN F+F AP++ + V A ++ P+ F P F G DI I F++
Sbjct: 65 EDIIPQGANKFIFTLAPIIAM--VSAFVSMAPIPFFPNFTLFGYEIKPLISDINIGFLFF 122
Query: 107 LTLAD---FFLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKP 163
L + + IL ++S + Y IG+AR L+S E L + A + + L
Sbjct: 123 LAVGSAGIYAPILAGLASNNKYSLIGSARATIQLLSFEVVSTLTILAPLMVVGSL----- 177
Query: 164 FSLGSLYEHNLWELGPMV-WVA--GVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLV 220
SL E N ++ G + W+ + +F+ +E+ F++ E E EI G
Sbjct: 178 ----SLVEINHYQSGGFLDWLVFKQPLAFVLFLIASYAELNRTPFDLLEHEAEIVAGYCT 233
Query: 221 EYSGRYLGIIKLAESIKEFIAASLVVAVLFPWQVGIPG-IQGYIVNLLIHTAKVFIVLLV 279
EYSG G+ LAE F A S V++++F G I G I L+ VF+ + V
Sbjct: 234 EYSGLKWGMFFLAEYAHLF-AFSFVISIVFFGGFNAWGFIPGGIAILIKAGFFVFLSMWV 292
Query: 280 AKTIFRTVTGRLKITQAVNLLWTRVFAASIVGALLLALGVMI 321
R ++ Q +N+ W + +++ +L + ++I
Sbjct: 293 -----RATYPHVRPDQLMNMCWKIMLPLALLNIVLTGIVILI 329
>sp|P06254|NU1C_TOBAC NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1, CHLOROPLAST
Length = 367
Score = 95.2 bits (233), Expect = 1e-18
Identities = 93/340 (27%), Positives = 156/340 (45%), Gaps = 35/340 (10%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLMSK 56
+I+ L ++ L ++I L+ ++R++ A +Q+RIGP ILQ D KL+ K
Sbjct: 26 IIWMLFPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLLK 85
Query: 57 ETIIPNTANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKG-DIIVFIYLLTLADFFL 114
E +IP+T + +F P + + ++ + P G + A + +I + ++A L
Sbjct: 86 ENLIPSTGDTRLFSIGPSIAVISIFLSYSVIPFGDHLVLADLSIGVFFWIAISSIAPVGL 145
Query: 115 ILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYE--- 171
++ S + Y +G R A IS E + L V ++ + +L S + E
Sbjct: 146 LMSGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISLRVIRLS--NSLSTVDIVEAQS 203
Query: 172 -HNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+ W G +W + I +S LA E E F++PEAEEE+ G EYSG G+
Sbjct: 204 KYGFW--GWNLWRQPIGFIVFLISSLA-ECERLPFDLPEAEEELVAGYQTEYSGIKFGLF 260
Query: 231 KLAESIKEFIAASLVVAVLF--PWQVGIP--------GIQ------GYIVNLLIHTAKVF 274
+A S + +SL V VL+ W + IP GI G ++ + I AK +
Sbjct: 261 TVA-SYLNLLVSSLFVTVLYLGGWNLSIPYIFVPELFGINKRGKVFGTLIGIFITLAKTY 319
Query: 275 IVLLVAKTIFRTVTGRLKITQAVNLLWTRVFAASIVGALL 314
+ L + R RL++ Q +NL W + S+ LL
Sbjct: 320 LFLFI-PIATRWTLPRLRMDQLLNLGWKFLLPISLGNLLL 358
>gi|5835304 NADH dehydrogenase subunit 1 [Arbacia lixula]
>gi|7431902|pir||T11793 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - sea urchin (Arbacia lixula)
mitochondrion >gi|1480388|emb|CAA56608.1| (X80396) NADH1
[Arbacia lixula]
Length = 323
Score = 95.2 bits (233), Expect = 1e-18
Identities = 91/330 (27%), Positives = 156/330 (46%), Gaps = 25/330 (7%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
M I+A LI V + + ++RK++ MQ R GP + LQPF D LKL
Sbjct: 1 MAYIFAFFELITFLVPVLLAVAFLTLVERKVLGYMQFRKGPKVVGPYGLLQPFADGLKLF 60
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
KET+ P++A+ ++F A+PVL LT + L + P+ SP + +++ + L +L+ +
Sbjct: 61 IKETLKPSSASPYLFFASPVLFLTLALLLWNFMPV-TSPALDLQLSLLLVLGLSSLSVYA 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
++ +S S Y IGA R VA IS E ++ L +++ +S S +Y
Sbjct: 120 ILGSGWASNSKYSLIGAIRAVAQTISYEISLALIFVSIILLVS--------SFNLIY--- 168
Query: 174 LWELGPMVW--VAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
+ G W ++ + L Y+++ +E F++ E E EI VEY+G +
Sbjct: 169 IVTAGEFSWFSMSCLPLFYIWLVSTLAETNRAPFDLTEGESEIVSAINVEYAGGPFALFF 228
Query: 232 LAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRL 291
+AE I +L VLF +P Y +NLL+ K +++ + R R
Sbjct: 229 IAE-YANIILMNLFSVVLFLGGT-LPINNNYPLNLLLLGIKTTLLVFFFLWV-RAAYPRF 285
Query: 292 KITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ Q + L W + + +GAL + V++
Sbjct: 286 RYDQLMFLTW-KSYLPFAIGALCFVITVIL 314
>emb|CAA09812.1| (AJ011848) NADH dehydrogenase ND1 [Hordeum vulgare]
Length = 362
Score = 94.8 bits (232), Expect = 1e-18
Identities = 91/341 (26%), Positives = 152/341 (43%), Gaps = 34/341 (9%)
Query: 1 MKVIYALIGLI---LLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFL 51
+K +Y LI ++ L ++I L+ ++R++ A +Q+RIGP +LQ D
Sbjct: 20 LKEVYGLISILPILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGT 79
Query: 52 KLMSKETIIPNTANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKG-DIIVFIYLLTL 109
KL+ KE I+P+ + +F P + + +V+ P+G+ + A + ++I + ++
Sbjct: 80 KLLFKEDILPSRGDISLFSIGPSIAVISVLLSFLVIPLGYHFVLADLSIGVFLWIAISSI 139
Query: 110 ADFFLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSL 169
A L++ SS + Y G R A IS E + V A+ + S
Sbjct: 140 APIGLLMAGYSSNNKYSFSGGLRAAAQSISYEIPLTFCVLAISLLSNSSSTVDIVEAQSK 199
Query: 170 YEHNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGI 229
Y W +W + + +S LA E E F++PEAEEE+ G EYSG G+
Sbjct: 200 YGFFGWN----IWRQPIGFLVFLISSLA-ECERLPFDLPEAEEELVAGYQTEYSGIKYGL 254
Query: 230 IKLAESIKEFIAASLVVAVLF--PWQVGIP--------------GIQGYIVNLLIHTAKV 273
L S + +SL V VL+ W IP GI + + I K
Sbjct: 255 FYLV-SYLNLLVSSLFVTVLYLGGWNFSIPYISFFDFFQMNKAVGILEMTMGIFITLTKA 313
Query: 274 FIVLLVAKTIFRTVTGRLKITQAVNLLWTRVFAASIVGALL 314
++ L ++ TI R R+++ Q +NL W + S+ LL
Sbjct: 314 YLFLFISITI-RWTLPRMRMDQLLNLGWKFLLPISLGNLLL 353
>gb|AAF03197.1|AF110138_29 (AF110138) NADH dehydrogenase subunit 1 [Nephroselmis olivacea]
Length = 329
Score = 94.4 bits (231), Expect = 2e-18
Identities = 91/338 (26%), Positives = 158/338 (45%), Gaps = 44/338 (13%)
Query: 2 KVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMS 55
K++ ++ L++ AY+++ +RK++ MQRR GP + LQP D LKL+
Sbjct: 11 KILGIIVPLLVGVAYLTLA-------ERKVMGSMQRRKGPNVVGIFGLLQPLADGLKLLI 63
Query: 56 KETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLL-TLADFF 113
KE ++P+ AN +F APV+ + A P G L A +++++ + +L +
Sbjct: 64 KEPVLPSNANIIIFLFAPVITFVLALVAWAVIPFGEGLLLADVNVGVLYLFAISSLGVYG 123
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+I+ SS S Y +GA R A ++S E ++ L + V+ L + + + +
Sbjct: 124 IIMAGWSSNSKYAFLGALRSAAQMVSYEVSIGLIIITVLMCAGSLNLSEIV----MAQQT 179
Query: 174 LWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLA 233
+W P+ ++I ++S LA E F++PEAE E+ G VEYS + L
Sbjct: 180 IWYCIPLF----PLMILFYISCLA-ETNRAPFDLPEAEAELVAGYNVEYSSMGFALFFLG 234
Query: 234 ESIKEFIAASLVVAVLFPWQVGIPGIQGYI--VNLLIHTAKVFIVLLVAKTIF------- 284
E I S V +VLF + G++ NL+I + V L K +F
Sbjct: 235 E-YANMIMMSAVCSVLF--------LGGWLPPFNLVIFSWIPGGVWLGLKVVFFLFIFIW 285
Query: 285 -RTVTGRLKITQAVNLLWTRVFAASIVGALLLALGVMI 321
R R + Q + L W ++F +G ++ GV++
Sbjct: 286 VRAAFPRYRYDQLMRLGW-KIFLPFSLGWVVFTAGVLV 322
>sp|P26522|NU1C_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1 >gi|319842|pir||QXYB1
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
Synechocystis sp. (strain PCC 6803)
>gi|47555|emb|CAA44374.1| (X62517) NDHA [Synechocystis
sp.] >gi|1001395|dbj|BAA10885.1| (D64006) NADH
dehydrogenase subunit 1 [Synechocystis sp.]
Length = 372
Score = 93.6 bits (229), Expect = 3e-18
Identities = 92/334 (27%), Positives = 157/334 (46%), Gaps = 36/334 (10%)
Query: 10 LILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLMSKETIIPNT 63
L+++ A V ++ +++ ++RK+ A Q+RIGP +LQP D +KL+ KE ++P
Sbjct: 36 LMIIGATVGVLVVVW--LERKISAAAQQRIGPEYAGPLGVLQPVADGIKLVFKEDVVPAK 93
Query: 64 AN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIY--LLTLADFFLILGVMS 120
A+ ++F PVL++ V P G L T ++ +F++ L ++A L++ +
Sbjct: 94 ADPWLFTLGPVLVVLPVFLSYLIVPFG-QNLVITDINVGIFLWIALSSIAPIGLLMSGYA 152
Query: 121 SGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELGPM 180
S + Y +G R A IS E + L V A++ + L S Y LG
Sbjct: 153 SNNKYSLLGGLRAAAQSISYEIPLSLAVLAIVMMSNSLSTIDIVDQQSGY----GILGWN 208
Query: 181 VWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEFI 240
+W V + +++ LA E E F++PEAEEE+ G EY+G + L S +
Sbjct: 209 IWRQPVGFLIFWIAALA-ECERLPFDLPEAEEELVAGYQTEYAGMKFALFYLG-SYVNLV 266
Query: 241 AASLVVAVLF--PWQVGIP--------GIQGYIVNLLIHTAKVFIVLLVAKTIF------ 284
++LV +VL+ W IP G+ L + A + I + V K+ F
Sbjct: 267 LSALVFSVLYLGGWDFPIPLENVANWLGVAPTTSWLQVLMAALGITMTVLKSYFLIFIAI 326
Query: 285 --RTVTGRLKITQAVNLLWTRVFAASIVGALLLA 316
R R++I Q +NL W + ++ L+ A
Sbjct: 327 LLRWTVPRVRIDQLLNLGWKFLLPVALANLLITA 360
>pir||S34389 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - jelly fungus
(Trimorphomyces papilionaceus) mitochondrion (fragment)
>gi|393384|emb|CAA52038.1| (X73821) NADH dehydrogenase
subunit 1 [Trimorphomyces papilionaceus]
Length = 332
Score = 93.2 bits (228), Expect = 4e-18
Identities = 88/332 (26%), Positives = 156/332 (46%), Gaps = 40/332 (12%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGP------PILQPFYDFLKLM 54
++V+ L+ ++L A+++II +RK++A MQRR+GP +LQPF D LKL+
Sbjct: 9 LEVLIVLVPILLSVAFMTII-------ERKVLAAMQRRVGPNKVGYYGVLQPFADALKLV 61
Query: 55 SKETIIPNTA-NFMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLAD-- 111
KET+IP A +F APV +T + +LL + + F + +Y L ++
Sbjct: 62 VKETVIPAQATKSLFFLAPV--ITLIFSLLGWGVIPFGAGLTLSDFSLGILYTLAISSVG 119
Query: 112 -FFLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY 170
+ ++ S+ S Y +G+ R A +IS E + + V+ + F++ S+
Sbjct: 120 VYGVLFAGWSANSKYAFLGSLRSTAQMISYELILSSAILTVIL------LTGSFNIISII 173
Query: 171 EHN--LWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLG 228
E+ +W + P++ + I F+S LA E F++PEAE E+ G E+SG
Sbjct: 174 ENQEAIWFVVPLL----PMFIIFFISALA-ETNRTPFDLPEAESELVAGFFTEHSGMIFV 228
Query: 229 IIKLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAK-----TI 283
L E + S + A+LF +P + ++ + I+ + + L
Sbjct: 229 FFFLGEYC-SIVLMSTLTAILFFGGYNMPEL--FVNDTFINLQSIVLGLKTCMFCFLFVW 285
Query: 284 FRTVTGRLKITQAVNLLWTRVFAASIVGALLL 315
FR RL+ Q + WT + +I +L+
Sbjct: 286 FRATLPRLRYDQLMVFCWTGMLPIAIALVILV 317
>pir||C64678 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO8 -
Helicobacter pylori (strain 26695)
>gi|2314432|gb|AAD08311.1| (AE000631) NADH-ubiquinone
oxidoreductase, NQO8 subunit (NQO8) [Helicobacter pylori
26695]
Length = 329
Score = 92.8 bits (227), Expect = 5e-18
Identities = 97/342 (28%), Positives = 161/342 (46%), Gaps = 40/342 (11%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPILQPF------YDFLKLMSK 56
+I LI +++L A S + + I+RK++A QRR+GP + PF D +KL +K
Sbjct: 5 IIETLIKILILVAVFSALGGFATYIERKVLAYFQRRLGPCYVGPFGLLQVAADGIKLFTK 64
Query: 57 ETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKG--------DI-IVFIYL 106
E IIP AN F+F AP++ + V A ++ P+ F P F G DI I F++
Sbjct: 65 EDIIPQGANKFIFTLAPIIAM--VSAFVSMAPIPFFPNFTLFGYEIKPLISDINIGFLFF 122
Query: 107 LTLAD---FFLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKP 163
L + + IL ++S + Y IG+AR L+S E L + A + + L
Sbjct: 123 LAVGSAGIYAPILAGLASNNKYSLIGSARATIQLLSFEVVSTLTILAPLMVVGSL----- 177
Query: 164 FSLGSLYEHNLWELGPMV-WVA--GVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLV 220
SL E N ++ G + W+ + +F+ +E+ F++ E E EI G
Sbjct: 178 ----SLVEINHYQSGGFLDWLVFKQPLAFVLFLIASYAELNRTPFDLLEHEAEIVAGYCT 233
Query: 221 EYSGRYLGIIKLAESIKEFIAASLVVAVLFPWQVGIPG-IQGYIVNLLIHTAKVFIVLLV 279
EYSG G+ LAE F A S V++++F G I G I L+ VF+ + V
Sbjct: 234 EYSGLKWGMFFLAEYAHLF-AFSFVISIVFFGGFNAWGFIPGGIAILIKAGFFVFLSMWV 292
Query: 280 AKTIFRTVTGRLKITQAVNLLWTRVFAASIVGALLLALGVMI 321
R ++ Q +++ W + +++ +L + ++I
Sbjct: 293 -----RATYPHVRPDQLMDMCWKIMLPLALLNIVLTGIIILI 329
>gi|5819099 NADH dehydrogenase subunit 1 [Balaenoptera physalus]
>gi|128631|sp|P24967|NU1M_BALPH NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431894|pir||A58850 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
finback whale mitochondrion >gi|12776|emb|CAA43444.1|
(X61145) NADH dehydrogenase subunit 1 [Balaenoptera
physalus]
Length = 318
Score = 92.8 bits (227), Expect = 5e-18
Identities = 90/310 (29%), Positives = 147/310 (47%), Gaps = 37/310 (11%)
Query: 7 LIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETII 60
+I ++ L + + + ++RK++ MQ R GP I LQPF D +KL +KE +
Sbjct: 3 MINILTLILPILLAVAFLTLVERKILGYMQFRKGPNIVGPHGLLQPFADAIKLFTKEPLR 62
Query: 61 PNTANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVM 119
P T++ MF APVL LT + + + PM + PL ++ + + +LA + ++
Sbjct: 63 PATSSTTMFIIAPVLALTLALTMWSPLPMPY-PLINMNLGVLFMLAMSSLAVYSILWSGW 121
Query: 120 SSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSL--YEHNLWEL 177
+S S Y IGA R VA IS E + + + +V L + ++L +L + LW L
Sbjct: 122 ASNSKYALIGALRAVAQTISYEVTLAIILLSV------LLMNGSYTLSTLATTQEQLWLL 175
Query: 178 GP-----MVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKL 232
P M+W F+S LA E F++ E E E+ G VEY+ + L
Sbjct: 176 FPSWPLAMMW---------FISTLA-ETNRAPFDLTEGESELVSGFNVEYAAGPFALFFL 225
Query: 233 AESIKEFIAASLVVAVLFPWQVGIP-GIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRL 291
AE I +++ A+LF P + Y NL+I T ++L ++ R R
Sbjct: 226 AE-YANIIMMNMLTAILFLGTFHNPHNPELYTANLIIKT----LLLTMSFLWIRASYPRF 280
Query: 292 KITQAVNLLW 301
+ Q ++LLW
Sbjct: 281 RYDQLMHLLW 290
>gi|7525090 NADH dehydrogenase ND1 [Arabidopsis thaliana]
>gi|5881751|dbj|BAA84442.1| (AP000423) NADH
dehydrogenase ND1 [Arabidopsis thaliana]
Length = 360
Score = 92.8 bits (227), Expect = 5e-18
Identities = 99/341 (29%), Positives = 159/341 (46%), Gaps = 36/341 (10%)
Query: 1 MKVIYALIGLIL-LYAYV-SIIS--LLFSGIDRKLVARMQRRIGPP------ILQPFYDF 50
+K +Y LI + + +++ V II+ L+ ++R++ A +Q+RIGP ILQ D
Sbjct: 20 LKEVYGLIWIFVPIFSLVLGIITGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADG 79
Query: 51 LKLMSKETIIPNTANF-MFRAAPVLMLTTVIALLAYTPMGFSP---LFATKGDIIVFIYL 106
KL+ KE + P+ N +F P + + ++ LL+Y+ + FS L I ++I +
Sbjct: 80 TKLLFKENLRPSRGNTPLFSIGPSIAVISI--LLSYSVIPFSNHLVLADLNIGIFLWIAI 137
Query: 107 LTLADFFLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSL 166
++A L++ S + Y +G R A IS E + L V ++ + L
Sbjct: 138 SSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSLSTVDIVEA 197
Query: 167 GSLYEHNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRY 226
S Y W L W + I +S LA E E F++PEAEEE+ G EYSG
Sbjct: 198 QSKYGFWGWNL----WRQPIGFIIFLISSLA-ECERLPFDLPEAEEELIAGYQTEYSGIK 252
Query: 227 LGIIKLAESIKEFIAASLVVAVLF--PWQVGIPGIQ-----------GYIVNLLIHTAKV 273
G+ +A S + +SL V VL+ W + IP I G + + I AK
Sbjct: 253 FGLFYVA-SYLNLLISSLFVTVLYLGGWNISIPYISILELFQRDQIFGTTIGIFITLAKT 311
Query: 274 FIVLLVAKTIFRTVTGRLKITQAVNLLWTRVFAASIVGALL 314
++ L V+ R RL++ Q +NL W + S+ LL
Sbjct: 312 YLFLFVS-IATRWTLPRLRMDQLLNLGWKFLLPISLGNLLL 351
>gi|8954370 NADH dehydrogenase subunit 1 [Cyanidioschyzon merolae]
>gi|7431915|pir||C58931 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - Cyanidioschyzon merolae
mitochondrion >gi|4115783|dbj|BAA36521.1| (D89861)
NADH-ubiquinone oxidoreductase chain 1 [Cyanidioschyzon
merolae]
Length = 330
Score = 92.8 bits (227), Expect = 5e-18
Identities = 92/325 (28%), Positives = 154/325 (47%), Gaps = 31/325 (9%)
Query: 10 LILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETIIPNT 63
LI++ VS+ L+ + +RK++ +Q+R GP + LQP D LKL KETI+PN+
Sbjct: 15 LIIVPLLVSVAYLILA--ERKIIGAIQKRKGPNVVGMFGLLQPLADGLKLFVKETILPNS 72
Query: 64 AN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLL---TLADFFLILGVM 119
AN F++ AP+ +T ++L ++ + F F + +YLL +LA + +I+
Sbjct: 73 ANIFIYIIAPI--ITFFLSLASWAVIPFDEGFVLTDLSMGLLYLLAISSLAVYGIIIAGW 130
Query: 120 SSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELGP 179
SS S Y +G R A +IS E ++ + V+ L + + L + ++W + P
Sbjct: 131 SSNSKYAFLGGLRSAAQIISYEVSIGFIIINVLLCAGSLNLSEIV----LAQQSIWYIIP 186
Query: 180 MVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEF 239
+ + + F+S LA E F++PEAE E+ G VEYS + L E
Sbjct: 187 LF----PLFLLFFISSLA-ETNRAPFDLPEAEAELVAGYNVEYSAITFALFFLGEYTNII 241
Query: 240 IAASLVVAVLF-PWQVGIPGIQGYIVNLLIHTAKVFI---VLLVAKTIFRTVTGRLKITQ 295
+ +S + + F W +P I+ + T I +LL A R R + Q
Sbjct: 242 LISSFITTIFFGGW---LPPFNMIILQWIPGTIWFGIKVTLLLFAFVWVRAAFPRYRYDQ 298
Query: 296 AVNLLWTRVFAASIVGALLLALGVM 320
+ L W +VF +G +L V+
Sbjct: 299 LIYLSW-KVFLPLSLGWVLFTSCVL 322
>gi|5836031 NADH dehydrogenase subunit 1 [Hippopotamus amphibius]
>gi|6647645|sp|Q9ZZZ1|NU1M_HIPAM NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|4127864|emb|CAA09428.1|
(AJ010957) NADH1 [Hippopotamus amphibius]
Length = 318
Score = 92.4 bits (226), Expect = 6e-18
Identities = 85/305 (27%), Positives = 147/305 (47%), Gaps = 27/305 (8%)
Query: 7 LIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETII 60
+I ++L A + + + ++RK++ MQ R GP I LQPF D +KL +KE +
Sbjct: 3 IINTLMLVAPILLAMAFLTLVERKILGYMQLRKGPNIVGPYGLLQPFADAIKLFTKEPLR 62
Query: 61 PNTANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVM 119
P+T++ MF AP+L LT + + PM + PL ++ + + +LA + ++
Sbjct: 63 PSTSSVSMFIIAPILALTLALTMWIPLPMPY-PLINMNLGVLFMLAMSSLAVYSILWSGW 121
Query: 120 SSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--EHNLWEL 177
+S S Y IGA R VA IS E + + + ++ L + F+L +L + LW
Sbjct: 122 ASNSKYALIGALRAVAQTISYEVTLAIILLSI------LLMNGSFTLSTLITTQEKLW-- 173
Query: 178 GPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIK 237
+++ + + + F+S LA E F++ E E E+ G VEY+ + +AE I
Sbjct: 174 --LIFPSWPLAMMWFISTLA-ETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFMAEYI- 229
Query: 238 EFIAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQA 296
I + VLF P + + Y +N I T ++L ++ R R + Q
Sbjct: 230 NIIMMNAFTTVLFLGTCYNPYLPELYTINFTIKT----LLLTMSFLWIRASYPRFRYDQL 285
Query: 297 VNLLW 301
++LLW
Sbjct: 286 MHLLW 290
>sp|Q00242|NU1C_PLEBO NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1 HOMOLOG
>gi|541331|pir||JQ2135 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - Plectonema boryanum
>gi|216818|dbj|BAA00814.1| (D01014) NADH-ubiquinone
oxidoreductase chain 1 homolog [Plectonema boryanum]
Length = 372
Score = 92.1 bits (225), Expect = 8e-18
Identities = 93/333 (27%), Positives = 156/333 (45%), Gaps = 34/333 (10%)
Query: 10 LILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLMSKETIIPNT 63
++LL A VS++ +++ ++RK+ A Q+RIGP +L P D LKL+ KE ++P
Sbjct: 36 IMLLAATVSVLVVVW--LERKISAAAQQRIGPEFIGPLGVLAPLADGLKLVLKEDVVPAK 93
Query: 64 AN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKG-DIIVFIYLLTLADFFLILGVMSS 121
A+ +F P +++ V P G + G I ++I L ++ L++ +S
Sbjct: 94 ADKLLFTLGPAIVVIPVFLSYLILPFGQNLQITDVGLGIFLWIALSSVVPIGLLMSGYAS 153
Query: 122 GSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELGPMV 181
+ Y +G R A IS E + L V AV+ + L + + Y LG +
Sbjct: 154 NNKYSLLGGLRAAAQSISYELPLALSVLAVVMMSNSLSTVDIVNQQAGY----GILGWNI 209
Query: 182 WVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEFIA 241
W V I +++ LA E E F++PEAEEE+ G EYSG + L + ++
Sbjct: 210 WRQPVGFIIFWIAALA-ECERIPFDLPEAEEELVAGYQTEYSGMKFALFYLGSYVNLTLS 268
Query: 242 ASLVVAVLF--PWQ--VGIPGIQGYI--------VNLLIHTAKVFIVLLVA------KTI 283
A L+ AVL+ W+ + + I G I + L+ T + + LL A +
Sbjct: 269 A-LLFAVLYLGGWEFPISLSVISGLIGVPESTPWLQLIFATIGIGMTLLKAYFLIFLAIL 327
Query: 284 FRTVTGRLKITQAVNLLWTRVFAASIVGALLLA 316
R R++I Q ++L W + S+V L+ A
Sbjct: 328 MRWTVPRVRIDQLLDLGWKFLLPVSLVNLLITA 360
>gb|AAB97894.1| (AF036381) NADH dehydrogenase subunit 1 [Thymallus thymallus]
Length = 324
Score = 91.7 bits (224), Expect = 1e-17
Identities = 84/304 (27%), Positives = 148/304 (48%), Gaps = 32/304 (10%)
Query: 7 LIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETII 60
++ ++L A+++++ +RK++ MQ R GP I LQP D LKL KE +
Sbjct: 16 IVPVLLAVAFLTLL-------ERKVLGYMQLRKGPNIVGPYGLLQPIADGLKLFIKEPVR 68
Query: 61 PNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGV- 118
P+T++ F+F A P+L LT +AL + PM +++F+ L+ + ILG
Sbjct: 69 PSTSSPFLFLATPMLALT--LALTLWAPMPIPYPVTDLNLVVLFVLALSSLAVYSILGSG 126
Query: 119 MSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELG 178
+S S Y IGA R VA IS E ++ L + +V+ + +Q ++ + ++W +
Sbjct: 127 WASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGVTLQT----FNIAQESIWLIV 182
Query: 179 PMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKE 238
P +A + I W +E F++ E E E+ G VEY+G + LAE
Sbjct: 183 PAWPLAALWYI-----WTLAETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAE-YAN 236
Query: 239 FIAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQAV 297
+ + + A+LF IP + + +NL+ A + +V L + + R + Q +
Sbjct: 237 ILLMNTLSAILFLGATHIPALPELTAMNLMTKAALLSVVFLWVRASY----PRFRYDQLI 292
Query: 298 NLLW 301
+L+W
Sbjct: 293 HLVW 296
>gi|11466505 NADH dehydrogenase, subunit 1 [Reclinomonas americana]
>gi|7431897|pir||S78136 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - Reclinomonas americana (ATCC
50394) mitochondrion >gi|2258335|gb|AAD11869.1|
(AF007261) NADH dehydrogenase, subunit 1 [Reclinomonas
americana]
Length = 333
Score = 91.3 bits (223), Expect = 1e-17
Identities = 85/331 (25%), Positives = 152/331 (45%), Gaps = 30/331 (9%)
Query: 2 KVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMS 55
K++ ++ L++ AY++++ +RK++A MQ+R GP + LQP D LKL+
Sbjct: 10 KILGLVLPLLICVAYLTLL-------ERKVIAAMQQRKGPNVVGVFGLLQPLADGLKLLL 62
Query: 56 KETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLAD--- 111
KETI+P AN +F AP+L + A P+ + A I +Y+L+++
Sbjct: 63 KETIVPTRANSAIFILAPILTFMLSLVSWAVIPIDDGMVIADLN--IGLLYILSVSSLGV 120
Query: 112 FFLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYE 171
+ +I SS S Y +G+ R A ++S E ++ L + V+ L + + +
Sbjct: 121 YGIITSGWSSNSKYAFLGSLRSAAQMVSYEVSIGLIIITVLMCAGSLNLTQIVRC----Q 176
Query: 172 HNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
++W + P+ + + F+S LA E F++PEAE E+ G VEYS +
Sbjct: 177 ESMWYIIPLF----PLFVMFFISILA-ETNRSPFDLPEAEAELVAGYNVEYSAMGFALFF 231
Query: 232 LAESIKEFIAASL-VVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
L E + S+ + L W + + ++ I + LL R R
Sbjct: 232 LGEYANMILMCSMCTILFLGGWLAPLNILPFTLIPGSIWFGLKVVFLLFVFIWVRATFPR 291
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ Q + L W ++F +G +L GV++
Sbjct: 292 YRYDQLMRLGW-KIFLPFSLGWVLFVAGVLV 321
>sp|Q60019|NQO8_THETH NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 8 (NADH DEHYDROGENASE 1, CHAIN
8) (NDH-1, CHAIN 8) >gi|7431938|pir||T11905 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain NQO8 -
Thermus aquaticus thermophilus
>gi|1279868|gb|AAA97945.1| (U52917) NADH dehydrogenase
I, subunit NQO8 [Thermus thermophilus]
Length = 365
Score = 90.9 bits (222), Expect = 2e-17
Identities = 91/339 (26%), Positives = 162/339 (46%), Gaps = 41/339 (12%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLM 54
+K + ++GL+ +A++++I +R+L+AR Q R+GP +LQP D +K +
Sbjct: 15 LKALLVVVGLLTAFAFMTLI-------ERRLLARFQVRMGPNRVGPFGLLQPLADAIKSI 67
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKG----------DIIVF 103
KE I+ A+ F+F AP +++ V ALLA+ + F P + G I+
Sbjct: 68 FKEDIVVAQADRFLFVLAP--LISVVFALLAFGLIPFGPPGSFFGYQPWVINLDLGILYL 125
Query: 104 IYLLTLADFFLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKP 163
+ LA + + L +SGS Y +G+ R A LIS E + L + A + + L +
Sbjct: 126 FAVSELAVYGIFLSGWASGSKYSLLGSLRSSASLISYELGLGLALLAPVLLVGSLNLN-- 183
Query: 164 FSLGSLYEHNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYS 223
+ + + + W ++ L+Y+ S +E F++PEAE+E+ G EYS
Sbjct: 184 -DIVNWQKEHGWLF---LYAFPAFLVYLIASM--AEAARTPFDLPEAEQELVGGYHTEYS 237
Query: 224 GRYLGIIKLAESIKEFIAASLVVAVLFPWQVGIPGIQ-GYIVNLLIHTAKVFIVLLVAKT 282
+ ++AE I FI AS ++ LF +P ++ Y+ L +F + + T
Sbjct: 238 SIKWALFQMAEYI-HFITASALIPTLFLGGWTMPVLEVPYLWMFLKIAFFLFFFIWIRAT 296
Query: 283 IFRTVTGRLKITQAVNLLWTRVFAASIVGALLLALGVMI 321
F RL+ Q + W +F +++ L+ AL V +
Sbjct: 297 WF-----RLRYDQLLRFGWGFLFPLALLWFLVTALVVAL 330
>gi|11466583 NADH dehydrogenase subunit 1 [Rhodomonas salina]
>gi|10444170|gb|AAG17744.1|AF288090_20 (AF288090) NADH
dehydrogenase subunit 1 [Rhodomonas salina]
Length = 328
Score = 90.9 bits (222), Expect = 2e-17
Identities = 86/330 (26%), Positives = 155/330 (46%), Gaps = 30/330 (9%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
+K + ++ +++ AY++++ +RK++A MQ+R GP + LQPF D LKL+
Sbjct: 12 LKSLAIIVPVLIAVAYLTLL-------ERKVMASMQQRRGPNVVGFFGLLQPFADGLKLL 64
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAY--TPMGFSPLFATKG-DIIVFIYLLTLA 110
KETI+P++AN F+F AP+ T +++LL++ P G +F +++ + +L
Sbjct: 65 IKETILPSSANTFIFIFAPI--FTFLLSLLSWCVIPFGIDCVFLDFNIGVLIIFAISSLG 122
Query: 111 DFFLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY 170
+ ++L SS S Y +G R A +IS E ++ L + V+ L + K
Sbjct: 123 VYGVVLAGWSSNSKYSFLGGLRSAAQMISYEVSIGLLIMPVLICAGSLNLSKIIEA---- 178
Query: 171 EHNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+++++ + P+ + I F+S LA E F++PEAE E+ G EYS +
Sbjct: 179 QNDVFYIIPLF----PVFIMFFISALA-ETNRAPFDLPEAEAELVSGFNTEYSAMAFALF 233
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
L E + S+ V + +I ++ K LL A R R
Sbjct: 234 FLGEYSNIILICSVTTIFFLGGWVPVFSFLNFIPGVVWFGLKT-TFLLFAFIWVRAAFPR 292
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVM 320
+ Q + L W ++F +G + G +
Sbjct: 293 YRYDQLMRLGW-KIFLPFSLGWVFFVSGFL 321
>emb|CAC12095.1| (AL445066) NADH dehydrogenase, subunit I related protein
[Thermoplasma acidophilum]
Length = 340
Score = 90.9 bits (222), Expect = 2e-17
Identities = 86/325 (26%), Positives = 156/325 (47%), Gaps = 27/325 (8%)
Query: 12 LLYAYVSIISLLFSGIDRKLVARMQRRIGP------PILQPFYDFLKLMSKETIIPNTA- 64
L++ V++I++++ I RK +AR+Q RIGP +LQ D LKL+ KE+IIP
Sbjct: 26 LIFVVVALIAMIY--IFRKYMARLQLRIGPNRVGKFGLLQLIADALKLVGKESIIPKLRD 83
Query: 65 NFMFRAAPVLMLTTVIALLAYTPMG----FSPLFATKGDI--IVFIYLLTLADFFLILGV 118
+F ++AAP ++ ++ P G L T ++ I+F + + +L
Sbjct: 84 DFAYKAAPYIVFIGLVVGFVLIPYGSFYWIGSLTITHSNVSLILFFGAIAMMPIGEVLAG 143
Query: 119 MSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELG 178
+SS + Y IGA R +A +S E MM+ +++ S L + P + +L G
Sbjct: 144 ISSHNKYAVIGAFRGIAKDVSFEVPMMISAVSLVMMDSALS-RTPLNFETLVSTQFIPFG 202
Query: 179 PMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKE 238
+ + ++VFM + + F++ E++ EI G EYSG G+ +
Sbjct: 203 ----ILQPLGLFVFMVAMIARSSYTPFDLSESDSEIVSGYSTEYSGMRFGLFYMGMFGSI 258
Query: 239 FIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQAVN 298
F+ SLVV++L+ G G + K I++L++ I+ ++ R+++ + +N
Sbjct: 259 FL-GSLVVSLLY--LGGFNGPYSSYAGFIYLLIKGLILVLISFLIWLSMP-RIRVDRFIN 314
Query: 299 LLWTRVFAASIVGAL---LLALGVM 320
W + SI+ + L LGV+
Sbjct: 315 FGWKILLPISIINLIWAGFLTLGVI 339
>gi|5835793 NADH dehydrogenase subunit 1 [Erinaceus europaeus]
Length = 317
Score = 90.9 bits (222), Expect = 2e-17
Identities = 88/312 (28%), Positives = 148/312 (47%), Gaps = 36/312 (11%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
+ ++ +I ++L A++++I +RK++ MQ R GP I LQP D +KL
Sbjct: 4 INILCLIIPILLAVAFLTLI-------ERKVLGYMQLRKGPNIVGSFGLLQPIADAVKLF 56
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGF-SPLFATKGDIIVFIYLLTLADF 112
+KE I+P T++ F+F AAP+L +T +AL+ + PM PL +++ + L +LA +
Sbjct: 57 TKEPILPITSSLFLFVAAPILAIT--LALMLWVPMPMPQPLININLNLLFILALSSLAVY 114
Query: 113 FLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY-- 170
++ +S S Y IG R VA IS E + + + +S L FSL +
Sbjct: 115 SILWSGWASNSKYALIGGLRAVAQTISYEVTLAIIL------LSLLMFNGSFSLNNFIYT 168
Query: 171 EHNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+ NLW L W +++ F+S LA E F++ E E E+ G VEY+ +
Sbjct: 169 QENLWLL-VSTW---PLMMMWFISTLA-ETNRAPFDLTEGESELVSGFNVEYAAGPFALF 223
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIF-RTVTG 289
LAE + +L V + P Y+ + I+L+ ++ R
Sbjct: 224 FLAEYANIIMMNALTVILFL-----APSNSMYLPEMFTMKFMPMIILMTMLFLWVRASYP 278
Query: 290 RLKITQAVNLLW 301
R + Q ++LLW
Sbjct: 279 RFRYDQLMHLLW 290
>gb|AAC69445.1| (AF009349) NADH dehydrogenase subunit 1 [Cucumaria miniata]
Length = 323
Score = 90.5 bits (221), Expect = 2e-17
Identities = 94/335 (28%), Positives = 157/335 (46%), Gaps = 45/335 (13%)
Query: 4 IYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKE 57
I ALI +I + V+ ++L ++RK++ MQ R GP I LQPF D LKL KE
Sbjct: 8 IQALIYIIPILLSVAFLTL----VERKVLGYMQFRKGPNIVGPYGILQPFADALKLFVKE 63
Query: 58 TIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLIL 116
T+ P+TA+ F+F +P L LT I L + P+ + L +++ + L +L+ + LI
Sbjct: 64 TLKPSTASPFLFFFSPFLFLTLAITLWSLVPLPNTSLNINL-SLLLILGLSSLSVYSLIG 122
Query: 117 GVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYE--HNL 174
+S S Y IG R +A IS E +M L + +++ ++ FSL + E +N
Sbjct: 123 AGWASNSKYSLIGGIRAIAQTISYEISMGLIILSILLWVNS------FSLKDINEIQNNW 176
Query: 175 WELGPMVWVAGVILIY--VFMSWLAS---EIEVGFFNIPEAEEEIAEGTLVEYSGRYLGI 229
W +IL Y +F+ W+ S E F++ E E E+ G VEY+G +
Sbjct: 177 W----------IILPYFSLFIMWIVSTLAETNRAPFDLTEGESELVSGYNVEYAGGPFAL 226
Query: 230 IKLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIF---RT 286
+AE A+++ L + + G + +I + + + L+ F R
Sbjct: 227 FFIAE------YANIIFMNLLSVLIFLGGSSPFSETPIISSLTIALKTLLLVFWFLWVRA 280
Query: 287 VTGRLKITQAVNLLWTRVFAASIVGALLLALGVMI 321
R + Q ++L W S+ G L + + +I
Sbjct: 281 SYPRFRYDQLMHLTWKNYLPFSL-GILCITITAII 314
>gi|5835010 NADH dehydrogenase subunit 1 [Halichoerus grypus]
>gi|585590|sp|P38598|NU1M_HALGR NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|543077|pir||S41835 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - gray
seal mitochondrion >gi|414758|emb|CAA50877.1| (X72004)
NADH-ubiquinone oxidoreductase subunit 1 [Halichoerus
grypus]
Length = 318
Score = 90.5 bits (221), Expect = 2e-17
Identities = 86/311 (27%), Positives = 151/311 (47%), Gaps = 34/311 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
+ +I +I ++L A+++++ +RK++ MQ R GP I LQP D +KL
Sbjct: 4 INIISLIIPILLAVAFLTLV-------ERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLF 56
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE + P T++ MF AP+L LT + + PM + PL ++ + + +LA +
Sbjct: 57 TKEPLRPLTSSTTMFIMAPILALTLALTMWVPLPMPY-PLINMNLGVLFMLAMSSLAVYS 115
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--E 171
++ +S S Y IGA R VA IS E + + + +V L + F+L +L +
Sbjct: 116 ILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSV------LLMNGSFTLSTLIITQ 169
Query: 172 HNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
+LW +++ A + + F+S LA E F++ E E E+ G VEY+ +
Sbjct: 170 EHLW----LIFPAWPLAMMWFISTLA-ETNRAPFDLTEGESELVSGFNVEYAAGPFAMFF 224
Query: 232 LAESIKEFIAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
LAE I ++ +LF P + + Y+VN + T + I+ L + + R
Sbjct: 225 LAE-YANIIMMNIFTTLLFFGAFHNPYMPELYVVNFTVKTLALTILFLWIRASY----PR 279
Query: 291 LKITQAVNLLW 301
+ Q ++LLW
Sbjct: 280 FRYDQLMHLLW 290
>gb|AAG28190.1|AF304201_1 (AF304201) NADH1 [Sus scrofa]
Length = 318
Score = 90.5 bits (221), Expect = 2e-17
Identities = 88/318 (27%), Positives = 151/318 (46%), Gaps = 45/318 (14%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
M +I AL +I + V+ ++L ++RK++ MQ R GP + LQP D LKL
Sbjct: 1 MFMINALSLIIPILLAVAFLTL----VERKVLGYMQLRKGPNVVGPYGLLQPIADALKLF 56
Query: 55 SKETIIPNTANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE + P T++F MF AP+L L+ + + PM + PL ++ + + +LA +
Sbjct: 57 TKEPLRPATSSFSMFIIAPILALSLALTMWIPLPMPY-PLINMNLGVLFMLAMSSLAVYS 115
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--E 171
++ +S S Y IGA R VA IS E + + + +V L + ++L +L +
Sbjct: 116 ILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSV------LLMNGSYTLSTLITTQ 169
Query: 172 HNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
++W M++ + + + F+S LA E F++ E E E+ G VEY+ +
Sbjct: 170 EHIW----MIFTSWPLAMMWFISTLA-ETNRAPFDLTEGESELVSGFNVEYAAGPFAMFF 224
Query: 232 LAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVT--- 288
+AE I + A+LF P HT +++ + V KT+ T+T
Sbjct: 225 MAE-YANIIMMNAFTAILFLGTSHDP-----------HTPELYTINFVLKTLALTITFLW 272
Query: 289 -----GRLKITQAVNLLW 301
R + Q ++LLW
Sbjct: 273 IRASYPRFRYDQLMHLLW 290
>gi|5834996 NADH dehydrogenase subunit 1 [Balaenoptera musculus]
>gi|730199|sp|P41296|NU1M_BALMU NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|625367|pir||S41820 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - blue
whale mitochondrion >gi|414127|emb|CAA50995.1| (X72204)
NADH-ubiquinone oxidoreductase subunit 1 [Balaenoptera
musculus]
Length = 318
Score = 90.1 bits (220), Expect = 3e-17
Identities = 89/310 (28%), Positives = 145/310 (46%), Gaps = 37/310 (11%)
Query: 7 LIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETII 60
+I ++ L + + + ++RK++ MQ R GP I LQPF D +KL +KE +
Sbjct: 3 MINILTLILPILLAVAFLTLVERKILGYMQFRKGPNIVGPHGLLQPFADAIKLFTKEPLR 62
Query: 61 PNTANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVM 119
P T++ MF APVL L + + + PM + PL ++ + + +LA + ++
Sbjct: 63 PATSSTTMFIIAPVLALALALTMWSPLPMPY-PLINMNLGVLFMLAMSSLAVYSILWSGW 121
Query: 120 SSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSL--YEHNLWEL 177
+S S Y IGA R VA IS E + + + +V L + ++L +L + LW L
Sbjct: 122 ASNSKYALIGALRAVAQTISYEVTLAIILLSV------LLMNGSYTLSTLATTQEQLWLL 175
Query: 178 GP-----MVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKL 232
P M+W F+S LA E F++ E E E+ G VEY+ + L
Sbjct: 176 FPSWPLAMMW---------FISTLA-ETNRAPFDLTEGESELVSGFNVEYAAGPFALFFL 225
Query: 233 AESIKEFIAASLVVAVLFPWQVGIP-GIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRL 291
AE I ++ A+LF P + Y NL+I T ++L ++ R R
Sbjct: 226 AE-YANIIMMNMFTAILFLGTFHNPCNPELYTTNLIIKT----LLLTMSFLWIRASYPRF 280
Query: 292 KITQAVNLLW 301
+ Q ++LLW
Sbjct: 281 RYDQLMHLLW 290
>sp|P42032|NUOH_RHOCA NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
8) (NUO8) >gi|282170|pir||S22368 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) chain 1 - Rhodobacter
capsulatus >gi|3282571|gb|AAC24997.1| (AF029365) NUOH
[Rhodobacter capsulatus] >gi|1586520|prf||2204231A NADH
ubiquinone oxidoreductase [Rhodobacter capsulatus]
Length = 345
Score = 90.1 bits (220), Expect = 3e-17
Identities = 84/326 (25%), Positives = 154/326 (46%), Gaps = 31/326 (9%)
Query: 10 LILLYAYVSIISLLFSGI------DRKLVARMQRRIGPPI------LQPFYDFLKLMSKE 57
LILL + II+ + G+ DRK+ A +Q R GP + LQ D K + KE
Sbjct: 13 LILLAQGLGIIAFVMIGLLLLVWGDRKIWAAVQMRKGPNVVGAFGLLQSVADAAKYVFKE 72
Query: 58 TIIPNTANF-MFRAAPVLMLTTVIALLAYTPMGFSP--LFATKGDIIVFIYLLTLADFF- 113
++P + ++ AP ML+ V+ALLA+ + F+ + A ++F++ ++ + +
Sbjct: 73 IVVPAGVDKPVYFLAP--MLSLVLALLAWVVVPFNEGWVMADINVAVLFVFAVSSLEVYG 130
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+I+G +S S Y +G+ R A +IS E +M L + V+ + +L ++ E
Sbjct: 131 VIMGGWASNSKYPFLGSLRSAAQMISYEVSMGLIIVGVIISTGSM------NLSAIVEAQ 184
Query: 174 LWELGPM--VWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
+ G + W+ + ++ +F +E F++PEAE E+ G +VEYS +
Sbjct: 185 RGDFGLLNWYWLPHLPMVALFFISALAETNRPPFDLPEAESELVAGFMVEYSSTPYLLFM 244
Query: 232 LAESIKEFIAASLVVAVLF-PWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
E I ++ +L + F W IPG+ ++ ++ A VF V + K I R
Sbjct: 245 AGEYIAVWLMCALTSVLFFGGWLSPIPGVPDGVLWMVAKMAAVFFVFAMVKAI----VPR 300
Query: 291 LKITQAVNLLWTRVFAASIVGALLLA 316
+ Q + + W S+ +++A
Sbjct: 301 YRYDQLMRIGWKVFLPLSLAWVVVVA 326
>gi|5835155 NADH dehydrogenase subunit 1 [Gorilla gorilla]
>gi|6045104|dbj|BAA85277.1| (D38114) NADH dehydrogenase
subunit 1 (ND1) [Gorilla gorilla]
Length = 318
Score = 90.1 bits (220), Expect = 3e-17
Identities = 88/314 (28%), Positives = 146/314 (46%), Gaps = 43/314 (13%)
Query: 6 ALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETI 59
++ L+LL + I +RK++ MQ R GP + LQPF D +KL +KE +
Sbjct: 2 SMANLLLLIVPILIAMAFLMLTERKILGYMQLRKGPNVVGPYGLLQPFADAMKLFTKEPL 61
Query: 60 IPNTANF-MFRAAPVLMLTTVIALLAYTPMGF-SPLFATKGDIIVFIYLLTLADFFLILG 117
P+T+ ++ AP L LT IALL +TP+ +PL ++ + +LA + ++
Sbjct: 62 KPSTSTITLYITAPTLALT--IALLLWTPLPMPNPLVNLNLGLLFILATSSLAVYSILWS 119
Query: 118 VMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--EHNLW 175
+S S Y IGA R VA IS E + + + +S L + F+L +L + +LW
Sbjct: 120 GWASNSNYALIGALRAVAQTISYEVTLAIIL------LSTLLMNGSFNLSTLIMTQEHLW 173
Query: 176 ELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAES 235
L P W ++ F+S LA E F++ E E E+ G +EY+ L + +AE
Sbjct: 174 LLLP-TWPLAMMW---FISTLA-ETNRTPFDLAEGESELVSGFNIEYAAGPLALFFMAEY 228
Query: 236 IKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTI--------FRTV 287
+ + +L + G N H+ +++ V + KT+ RT
Sbjct: 229 MNIIMMNTLTTMIFL----------GTTYN--AHSPELYTVCFITKTLLLTSLFLWIRTA 276
Query: 288 TGRLKITQAVNLLW 301
R + Q ++LLW
Sbjct: 277 YPRFRYDQLMHLLW 290
>gi|9653247 NADH dehydrogenase subunit 1 [Chondrus crispus]
>gi|1352537|sp|P48898|NU1M_CHOCR NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431891|pir||S59101 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - red
alga (Chondrus crispus) mitochondrion
>gi|1334495|emb|CAA87617.1| (Z47547) NADH dehydrogenase
(ubiquinone), subunit 1 [Chondrus crispus]
Length = 326
Score = 90.1 bits (220), Expect = 3e-17
Identities = 75/258 (29%), Positives = 127/258 (49%), Gaps = 24/258 (9%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
+K+I ++ L++ AY+++ +RK++A +QRR GP I LQP D LKL
Sbjct: 8 IKIITIILPLLVAVAYMTLA-------ERKVMAAIQRRKGPNIVGVFGLLQPLADGLKLF 60
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLL-TLADF 112
KETI+P++AN +F AP+L + P+G +++ +++I + +L +
Sbjct: 61 VKETILPSSANIIIFILAPILTFLLALVSWCVIPLGEGMVYSDINIGVLYILAISSLGVY 120
Query: 113 FLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEH 172
+I +S S Y +GA R A ++S E ++ L + V+ L F+ L +
Sbjct: 121 GIITSGWASNSKYAFLGALRSAAQMVSYEVSIGLILINVLLCSGSLN----FTEIVLAQQ 176
Query: 173 NLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKL 232
++W + P+ I I ++S LA E F++PEAE E+ G VEYS + L
Sbjct: 177 SIWFVIPLF----PIFIMFYISILA-ETNRAPFDLPEAEAELVAGYNVEYSAMGFALFFL 231
Query: 233 AESIKEFIAASLVVAVLF 250
E + SL + F
Sbjct: 232 GEYANMILMCSLTTILFF 249
>gb|AAB97891.1| (AF036378) NADH dehydrogenase subunit 1 [Thymallus arcticus]
Length = 324
Score = 89.7 bits (219), Expect = 4e-17
Identities = 82/303 (27%), Positives = 147/303 (48%), Gaps = 30/303 (9%)
Query: 7 LIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETII 60
++ ++L A+++++ +RK++ MQ R GP I LQP D LKL KE +
Sbjct: 16 IVPVLLAVAFLTLL-------ERKVLGYMQLRKGPNIVGPYGLLQPIADGLKLFIKEPVR 68
Query: 61 PNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVM 119
P+T++ F+F A P+L LT + L A P+ + P+ ++ + L +LA + ++
Sbjct: 69 PSTSSPFLFLATPMLALTLALTLWAPMPIPY-PVTDLNLGVLFVLALSSLAVYSILGSGW 127
Query: 120 SSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELGP 179
+S S Y IGA R VA IS E ++ L + +V+ +Q ++ + ++W + P
Sbjct: 128 ASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTLQT----FNIAQESIWLVVP 183
Query: 180 MVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEF 239
+A + I W +E F+ E E E+ G VEY+G + LAE
Sbjct: 184 AWPLAALWYI-----WTLAETNRAPFDFTEGESELVSGFNVEYAGGPFALFFLAE-YANI 237
Query: 240 IAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQAVN 298
+ + + A+LF IP + + +NL+ A + +V L + + R + Q ++
Sbjct: 238 LLMNTLSAILFLGATHIPALPELTAMNLMTKAALLSVVFLWVRASY----PRFRYDQLMH 293
Query: 299 LLW 301
L+W
Sbjct: 294 LVW 296
>pir||E70413 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoH1 -
Aquifex aeolicus >gi|2983738|gb|AAC07299.1| (AE000734)
NADH dehydrogenase I chain H [Aquifex aeolicus]
Length = 336
Score = 89.7 bits (219), Expect = 4e-17
Identities = 87/335 (25%), Positives = 145/335 (42%), Gaps = 31/335 (9%)
Query: 5 YALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLMSKET 58
+ + ++++++ I + +RKL +Q R+GP ILQP D LKL +KE
Sbjct: 10 FTFLKIVIVFSLALGIGAYLTWFERKLAGHIQNRLGPTVVGKFGILQPLADALKLATKEV 69
Query: 59 IIPNTANF-MFRAAPVLMLTTVIALLAYTPMG---------FSPLFATKGDIIVFIYLL- 107
IIP A+ ++ AA V+ L I LL P G P+ A ++ +
Sbjct: 70 IIPRGADKPVYYAAVVMALVPSILLLTIIPFGPGFRVGNTYIEPIIADVNIALLLAFAFG 129
Query: 108 TLADFFLILGVMSSGSPYGRIGAAREVAMLISREPAM---MLGVFAVMWGISKLGVQKPF 164
+L+ + I +S S Y IG+ R+ A++I+ E + +LGV + +S +G+ +
Sbjct: 130 SLSVYGTIFSGWASNSKYAFIGSLRKAAVVIAYEVVLGFSVLGVILLAGTLSTVGIVE-- 187
Query: 165 SLGSLYEHNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSG 224
+ + +W ++ V I LA V F +I EAE E+ G VEY G
Sbjct: 188 ---AQIQKGVW----FIFYQPVAFILYLFCMLAESGRVPF-DIQEAEAELVTGYNVEYGG 239
Query: 225 RYLGIIKLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIF 284
G LAE IA S + VLF P I G + K F ++ +
Sbjct: 240 MKFGAFPLAEWYVNVIALSAIAVVLFFGGWDGPHIFGPLSPYFWFVFKTFALVFFTLWLH 299
Query: 285 RTVTGRLKITQAVNLLWTRVFAASIVGALLLALGV 319
T+ R + + W + +I+ ++ A+ V
Sbjct: 300 WTLP-RFQAKDITEIAWKILLPIAILNVIITAVVV 333
>gi|5835989 NADH dehydrogenase subunit 1 [Cavia porcellus]
>gi|5679798|emb|CAB51818.1| (AJ222767) NADH
dehydrogenase subunit 1 [Cavia porcellus]
Length = 319
Score = 89.7 bits (219), Expect = 4e-17
Identities = 86/304 (28%), Positives = 141/304 (46%), Gaps = 25/304 (8%)
Query: 7 LIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETII 60
+I L+LL + + + +RK++ MQ R GP I LQP D LKL KE +
Sbjct: 3 MINLLLLIIPILLAMAFLTLTERKILGYMQLRKGPNIVGPYGILQPIADALKLFIKEPLR 62
Query: 61 PNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVM 119
P+T++ F+F AP L LT +++ PM + PL ++ + +LA ++
Sbjct: 63 PSTSSVFLFVLAPTLALTLALSMWIPIPMPY-PLINMNLGVLFILATSSLAVHSILWSGW 121
Query: 120 SSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYE--HNLWEL 177
+S S Y IGA R VA IS E + + +F +S L + FSL L E N W L
Sbjct: 122 ASNSNYALIGALRAVAQTISYEVTLAI-IF-----LSVLLLNGSFSLVGLMETQKNTWLL 175
Query: 178 GPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIK 237
W ++ F+S LA E F++ E E E+ G VEY+ + +AE +
Sbjct: 176 -LSTWPLAMMW---FVSTLA-ETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYMN 230
Query: 238 EFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQAV 297
+ +L + F I + + +N ++ T + ++ L + + R + Q +
Sbjct: 231 IIMMNALTTIIFFNAMPTINSPEIFTMNFMLKTLALTVLFLWVRASY----PRFRYDQLM 286
Query: 298 NLLW 301
+LLW
Sbjct: 287 HLLW 290
>gb|AAF66631.1| (AF143001) NADH dehydrogenase subunit 1 [Rhinolophus ferrumequinum]
Length = 318
Score = 89.7 bits (219), Expect = 4e-17
Identities = 83/304 (27%), Positives = 145/304 (47%), Gaps = 25/304 (8%)
Query: 7 LIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETII 60
+I L+LL + + + I+RK++ MQ R GP + LQP D +KL +KE +
Sbjct: 3 MINLLLLIVPILLAVAFLTLIERKVLGYMQFRKGPNVVGPYGLLQPIADAVKLFTKEPLR 62
Query: 61 PNTANF-MFRAAPVLMLTTVIALLAYTPMGFS-PLFATKGDIIVFIYLLTLADFFLILGV 118
P T++ MF APVL LT +AL +TP+ PL ++ + + +LA + ++
Sbjct: 63 PLTSSISMFIIAPVLALT--LALTMWTPLPMPHPLINLNLGVLFMLAMSSLAVYSILWSG 120
Query: 119 MSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELG 178
+S S Y IGA R VA IS E + + + +V+ + P + + ++W
Sbjct: 121 WASNSKYALIGALRAVAQTISYEVTLAIILLSVLLLSGSFSLSNPI----ITQEHMW--- 173
Query: 179 PMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKE 238
+++ + + + F+S LA E F++ E E E+ G VEY+G + LAE
Sbjct: 174 -LIFPSWPLAMMWFISTLA-ETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAE-YAN 230
Query: 239 FIAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQAV 297
I ++ LF P + + Y N ++ + ++L ++ R R + Q +
Sbjct: 231 IIMMNIFTTTLFLGAYHNPIMPELYTTNFVLKS----LLLTISGLWIRASYPRFRYDQLM 286
Query: 298 NLLW 301
+LLW
Sbjct: 287 HLLW 290
>gi|5835863 NADH dehydrogenase subunit 1 [Sus scrofa] >gi|7431944|pir||T10972
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
pig mitochondrion >gi|4958952|gb|AAD34185.1|AF034253_1
(AF034253) NADH dehydrogenase subunit 1 [Sus scrofa]
Length = 318
Score = 89.3 bits (218), Expect = 5e-17
Identities = 83/318 (26%), Positives = 151/318 (47%), Gaps = 48/318 (15%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
+ ++ +I ++L A+++++ +RK++ MQ R GP + LQP D LKL+
Sbjct: 4 INILSLIIPILLAVAFLTLV-------ERKVLGYMQLRKGPNVVGPYGLLQPIADALKLV 56
Query: 55 SKETIIPNTANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE + P T++ MF AP+L L+ + + PM + PL ++ + + +LA +
Sbjct: 57 TKEPLRPGTSSISMFIIAPILGLSLALTMWVPLPMPY-PLINMNLGVLFMLAMSSLAVYS 115
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--E 171
++ +S S Y IGA R VA IS E + + + +V L + ++L +L +
Sbjct: 116 ILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSV------LLMNGSYTLSTLITTQ 169
Query: 172 HNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
++W M++ + + + F+S LA E F++ E E E+ G VEY+ +
Sbjct: 170 EHIW----MIFTSWPLAMMWFISTLA-ETNRAPFDLTEGESELVSGFNVEYAAGPFAMFF 224
Query: 232 LAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVT--- 288
+AE I + A+LF P HT +++ + V KT+ T+T
Sbjct: 225 MAE-YANIIMMNAFTAILFLGASHDP-----------HTPELYTINFVLKTLALTITFLW 272
Query: 289 -----GRLKITQAVNLLW 301
R + Q ++LLW
Sbjct: 273 IRASYPRFRYDQLMHLLW 290
>gi|6137774 NADH dehydrogenase subunit 1 [Platynereis dumerilii]
>gi|6049624|gb|AAF02687.1|AF178678_7 (AF178678) NADH
dehydrogenase subunit 1; NAD1 [Platynereis dumerilii]
Length = 308
Score = 89.3 bits (218), Expect = 5e-17
Identities = 83/312 (26%), Positives = 146/312 (46%), Gaps = 29/312 (9%)
Query: 8 IGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLMSKETIIP 61
I +++ + + + F+ ++RK++ +Q R GP I QP D LKL +KE +P
Sbjct: 7 ITILITFICILLSMAFFTLLERKILGYIQLRKGPNKVSIMGIPQPMADALKLFTKELNLP 66
Query: 62 NTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVMS 120
+AN + F A P+L L + L + P SP T I++F+ + ++ + + +
Sbjct: 67 TSANVIPFIATPMLALFLALMLWSLYPYYSSPCMMTY-SIMLFLCISSMNVYTTLFSGWA 125
Query: 121 SGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELGPM 180
S S Y +GA R +A IS E +M L + M ++ L SL + N + G M
Sbjct: 126 SNSKYSLLGALRSIAQTISYEVSMALVILTPMIMLTTL------SLNLFMKLNSFMFGLM 179
Query: 181 VWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEFI 240
+W +L+ F++ LA E F++ E E E+ G EYS +I +AE + I
Sbjct: 180 LW---PLLVTWFITSLA-ETNRTPFDLAEGESELVSGFNTEYSSGTFALIFMAEYM-NII 234
Query: 241 AASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIF--RTVTGRLKITQAVN 298
A S++ VLF + + + L T + + LV+ R R++ + ++
Sbjct: 235 AMSMITFVLF--------MSLCVTSPLTETMMIMLTTLVSVLFIWARGAYPRMRYDKLMS 286
Query: 299 LLWTRVFAASIV 310
L W + ++V
Sbjct: 287 LTWKQFLPMTLV 298
>sp|O78693|NU1M_ATEPA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3399712|dbj|BAA32096.1|
(AB010971) NADH dehydrogenase subunit 1 [Ateles
paniscus]
Length = 318
Score = 88.9 bits (217), Expect = 7e-17
Identities = 85/308 (27%), Positives = 141/308 (45%), Gaps = 29/308 (9%)
Query: 7 LIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETII 60
++ L+LL I + +RK++ MQ R GP I LQP D +KL KE ++
Sbjct: 3 MVNLLLLIIPALIAMAFLTLTERKILGYMQFRKGPNIVGPYGMLQPIADAMKLFMKEPLL 62
Query: 61 PNT-ANFMFRAAPVLMLTTVIALLAYTPMGFS-PLFATKGDIIVFIYLLTLADFFLILGV 118
P T A+ ++ AP L L+ IALL ++P+ PL ++ + +LA + ++
Sbjct: 63 PTTSASTLYMTAPTLALS--IALLMWSPLPMPHPLINFNLGLLFMLATSSLAVYSILWSG 120
Query: 119 MSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELG 178
+S S Y IGA R VA IS E + + + + + +Q SL + EH+ W L
Sbjct: 121 WASNSNYALIGALRAVAQTISYEVTLAIILLSTLLMSGSFNLQ---SLITTQEHS-WLLL 176
Query: 179 PMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKE 238
P W ++ F S LA E F++ E E E+ G +EY+ + +AE +
Sbjct: 177 PS-WPMAMMW---FTSTLA-ETNRAPFDLTEGESELVSGFNIEYAAGSFALFFMAEYMNI 231
Query: 239 FIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIF---RTVTGRLKITQ 295
+ +L + + + Y +N + T L+ T+F RT R + Q
Sbjct: 232 IMMNALTTTIFLAMPYNMASSELYTMNFMTKT-------LLLTTLFLWIRTAYPRFRYDQ 284
Query: 296 AVNLLWTR 303
++LLW +
Sbjct: 285 LMHLLWKK 292
>sp|O79874|NU1M_PIG NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3702649|emb|CAA05229.1|
(AJ002189) NADH dehydrogenase subunit 1 [Sus scrofa]
>gi|11055630|gb|AAG28177.1|AF304200_1 (AF304200) NADH1
[Sus scrofa]
Length = 318
Score = 88.9 bits (217), Expect = 7e-17
Identities = 83/318 (26%), Positives = 150/318 (47%), Gaps = 48/318 (15%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
+ ++ +I ++L A+++++ +RK++ MQ R GP + LQP D LKL
Sbjct: 4 INILSLIIPILLAVAFLTLV-------ERKVLGYMQLRKGPNVVGPYGLLQPIADALKLF 56
Query: 55 SKETIIPNTANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE + P T++ MF AP+L L+ + + PM + PL ++ + + +LA +
Sbjct: 57 TKEPLRPATSSISMFIIAPILALSLALTMWVPLPMPY-PLINMNLGVLFMLAMSSLAVYS 115
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--E 171
++ +S S Y IGA R VA IS E + + + +V L + ++L +L +
Sbjct: 116 ILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSV------LLMNGSYTLSTLITTQ 169
Query: 172 HNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
++W M++ + + + F+S LA E F++ E E E+ G VEY+ +
Sbjct: 170 EHIW----MIFTSWPLAMMWFISTLA-ETNRAPFDLTEGESELVSGFNVEYAAGPFAMFF 224
Query: 232 LAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVT--- 288
+AE I + A+LF P HT +++ + V KT+ T+T
Sbjct: 225 MAE-YANIIMMNAFTAILFLGASHDP-----------HTPELYTINFVLKTLALTITFLW 272
Query: 289 -----GRLKITQAVNLLW 301
R + Q ++LLW
Sbjct: 273 IRASYPRFRYDQLMHLLW 290
>gi|5835905 NADH dehydrogenase subunit 1 [Salvelinus alpinus]
>gi|5257524|gb|AAD41385.1|AF154851_1 (AF154851) NADH
dehydrogenase subunit 1 [Salvelinus alpinus]
Length = 324
Score = 88.9 bits (217), Expect = 7e-17
Identities = 90/307 (29%), Positives = 149/307 (48%), Gaps = 27/307 (8%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSK 56
VI L ++ + V+ ++LL +RK++ MQ R GP I LQP D LKL K
Sbjct: 9 VINPLAYIVPVLLAVAFLTLL----ERKVLGYMQLRKGPNIVGPYGLLQPIADGLKLFIK 64
Query: 57 ETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLI 115
E + P+T++ F+F A P+L LT + L A P+ + P+ ++ + L +LA + ++
Sbjct: 65 EPVRPSTSSPFLFLATPMLALTLALTLWAPMPIPY-PITDLNLGVLFVLALSSLAVYSIL 123
Query: 116 LGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLW 175
+S S Y IGA R VA IS E ++ L + +V+ +Q ++ + ++W
Sbjct: 124 GSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTLQ----TFNVAQESIW 179
Query: 176 ELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAES 235
L P A + ++S LA E F++ E E E+ G VEY+G + LAE
Sbjct: 180 LLVP----AWPLTAMWYISTLA-ETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAE- 233
Query: 236 IKEFIAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKIT 294
+ + + AVLF IP + VNL+ A + +V L + + R +
Sbjct: 234 YANILLMNTLSAVLFLGASHIPAFPELTAVNLMTKAALLSVVFLWVRASY----PRFRYD 289
Query: 295 QAVNLLW 301
Q ++L+W
Sbjct: 290 QLMHLVW 296
>pir||S34388 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - jelly fungus
(Trimorphomyces papilionaceus) mitochondrion
>gi|393383|emb|CAA52037.1| (X73821) NADH dehydrogenase
subunit 1 [Trimorphomyces papilionaceus]
Length = 328
Score = 88.9 bits (217), Expect = 7e-17
Identities = 88/332 (26%), Positives = 156/332 (46%), Gaps = 41/332 (12%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGP------PILQPFYDFLKLM 54
++V+ L+ ++L A+++II +RK++A MQRR+GP +LQPF D LKL+
Sbjct: 9 LEVLIVLVPILLSVAFMTII-------ERKVLAAMQRRVGPNKVGYYGVLQPFADALKLV 61
Query: 55 SKETIIPNTA-NFMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLAD-- 111
KET+IP A +F APV +T + +LL + + F + +Y L ++
Sbjct: 62 VKETVIPAQATKSLFFLAPV--ITLIFSLLGWGVIPFGAGLTLSDFSLGILYTLAISSVG 119
Query: 112 -FFLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY 170
+ ++ S+ S Y +G+ R A +IS E + + V+ + F++ S+
Sbjct: 120 VYGVLFAGWSANSKYAFLGSLRSTAQMISYELILSSAILTVIL------LTGSFNIISII 173
Query: 171 EHN--LWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLG 228
E+ +W + P++ + I F+S LA E F++PEAE E+ G E+SG
Sbjct: 174 ENQEAIWFVVPLL----PMFIIFFISALA-ETNRTPFDLPEAESELVAGFFTEHSGMIFV 228
Query: 229 IIKLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAK-----TI 283
L E + S + A+LF +P + ++ + I+ + + L
Sbjct: 229 FFFLGEYC-SIVLMSTLTAILFFGGYNMPEL--FVNDTFINLQSIVLGLKTCMFCFLFVW 285
Query: 284 FRTVTGRLKITQAVNLLWTRVFAASIVGALLL 315
FR RL+ Q + WT + +I +L+
Sbjct: 286 FRATLPRLRY-QLMVFCWTGMLPLAIALVILV 316
>gi|6137789 NADH dehydrogensae subunit 1 [Metridium senile]
>gi|3122451|sp|Q37556|NU1M_METSE NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431940|pir||T11890 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - sea
anemone (Metridium senile) mitochondrion
>gi|1353406|gb|AAC47100.1| (U36784) NADH dehydrogenase
subunit 1 [Metridium senile] >gi|2920991|gb|AAC04636.1|
(AF000023) NADH dehydrogensae subunit 1 [Metridium
senile]
Length = 334
Score = 88.9 bits (217), Expect = 7e-17
Identities = 83/328 (25%), Positives = 155/328 (46%), Gaps = 34/328 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
+K++ +I L++ AY+++ +RK++ MQ R GP + LQP D +KL
Sbjct: 17 LKILIIVIPLLVAVAYLTLA-------ERKVLGYMQARKGPNVVGVYGLLQPLADGIKLF 69
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSP---LFATKGDIIVFIYLLTLA 110
+KE +IP+ AN F++ AAPVL T +AL+A+ + + + K I+ + + +++
Sbjct: 70 TKELVIPHYANLFIYVAAPVLSFT--LALIAWGVIPYDKGVVISDLKIGILFTLAVSSIS 127
Query: 111 DFFLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY 170
+ +++ +S S Y +GA R A +IS E ++ L + V+ + L + + +
Sbjct: 128 VYAILMSGWASQSKYAFLGAIRAAAQMISYEVSIGLIIITVILCVGSLNITE---IVLAQ 184
Query: 171 EHNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+W P+ VA +F + +E F++ E E E+ G VEY+ +
Sbjct: 185 SSGIWFFFPLFPVA-----MMFFASALAETNRAPFDLTEGESELVSGYNVEYASMSFALF 239
Query: 231 KLAESIKEFIAASLVVAVLF--PWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVT 288
LAE I S + +LF W I +G + T+ + ++ + + F
Sbjct: 240 FLAE-YAHIILMSCLTTILFLGGWLSPIVFFKGGPAWFGLKTSFIILLFIWVRASF---- 294
Query: 289 GRLKITQAVNLLWTRVFAASIVGALLLA 316
R++ Q + LLW S+ +L+A
Sbjct: 295 PRMRYDQLMALLWKSYLPLSLAFVVLVA 322
>gb|AAD20607.1| (AF117720) NADH dehydrogenase subunit 1 [Salmo trutta]
>gi|4426929|gb|AAD20608.1| (AF117721) NADH dehydrogenase
subunit 1 [Salmo trutta]
Length = 324
Score = 88.5 bits (216), Expect = 9e-17
Identities = 89/310 (28%), Positives = 147/310 (46%), Gaps = 33/310 (10%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSK 56
V+ L +I + V+ ++LL +RK++ MQ R GP I LQP D LKL K
Sbjct: 9 VVNPLAYIIPILLAVAFLTLL----ERKVLGYMQLRKGPNIVGPYGLLQPIADGLKLFIK 64
Query: 57 ETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLI 115
E + P+T++ F+F A P+L LT + L A P+ + P+ ++ + L +LA + ++
Sbjct: 65 EPVRPSTSSPFLFLATPMLALTLALTLWAPMPIPY-PITDLNLGVLFILALSSLAVYSIL 123
Query: 116 LGVMSSGSPYGRIGAAREVAMLISREPAM---MLGVFAVMWGISKLGVQKPFSLGSLYEH 172
+S S Y IGA R VA IS E ++ +LGV G + ++ +
Sbjct: 124 GSGWASNSKYALIGALRAVAQTISYEVSLGLILLGVIIFTGGFT-------LQTFNVAQE 176
Query: 173 NLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKL 232
++W L P A + ++S LA E F++ E E E+ G VEY+G + L
Sbjct: 177 SIWLLVP----AWPLAAMWYISTLA-ETNRAPFDLTEGESELVSGFNVEYAGGPFALFFL 231
Query: 233 AESIKEFIAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRL 291
AE + + + +LF IP + VNL+ A + +V L + + R
Sbjct: 232 AE-YANILLMNTLSTILFLGASHIPAFPELTAVNLMTKAALLSVVFLWVRASY----PRF 286
Query: 292 KITQAVNLLW 301
+ Q ++L+W
Sbjct: 287 RYDQLMHLVW 296
>gb|AAD43230.1|AF115416_1 (AF115416) NADH dehydrogenase subunit 1 [Salmo salar]
Length = 324
Score = 88.5 bits (216), Expect = 9e-17
Identities = 88/307 (28%), Positives = 149/307 (47%), Gaps = 27/307 (8%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSK 56
+I L ++ + V+ ++LL +RK++ MQ R GP I LQP D LKL K
Sbjct: 9 IINPLAYIVPILLAVAFLTLL----ERKVLGYMQLRKGPNIVGPYGLLQPIADGLKLFIK 64
Query: 57 ETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLI 115
E + P+T++ F+F A P+L LT + L A P+ + P+ ++ + L +LA + ++
Sbjct: 65 EPVRPSTSSPFLFLATPMLALTLALTLWAPMPIPY-PITDLNLGVLFVLALSSLAVYSIL 123
Query: 116 LGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLW 175
+S S Y IGA R VA IS E ++ L + +V+ +Q ++ + ++W
Sbjct: 124 GSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTLQ----TFNVAQESIW 179
Query: 176 ELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAES 235
L P A + ++S LA E F++ E E E+ G VEY+G + LAE
Sbjct: 180 LLVP----AWPLAAMWYISTLA-ETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAE- 233
Query: 236 IKEFIAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKIT 294
+ + + A+LF IP + VNL+ A + +V L + + R +
Sbjct: 234 YANILLMNTLSAILFLGASHIPAFPELTAVNLMTKAALLSVVFLWVRASY----PRFRYD 289
Query: 295 QAVNLLW 301
Q ++L+W
Sbjct: 290 QLMHLVW 296
>pir||A59153 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - western
lowland gorilla mitochondrion
Length = 318
Score = 88.5 bits (216), Expect = 9e-17
Identities = 87/314 (27%), Positives = 145/314 (45%), Gaps = 43/314 (13%)
Query: 6 ALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETI 59
++ L+LL + I +RK++ MQ R GP + LQPF D +KL +KE +
Sbjct: 2 SMANLLLLIVPILIAMAFLMLTERKILGYMQLRKGPNVVGPYGLLQPFADAMKLFTKEPL 61
Query: 60 IPNTANF-MFRAAPVLMLTTVIALLAYTPMGF-SPLFATKGDIIVFIYLLTLADFFLILG 117
P+T+ ++ AP L LT IALL +TP+ +PL ++ + +LA + ++
Sbjct: 62 KPSTSTITLYITAPTLALT--IALLLWTPLPMPNPLVNLNLGLLFILATSSLAVYSILWS 119
Query: 118 VMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--EHNLW 175
+S S Y IGA R VA IS E + + + +S L + F+L +L + +LW
Sbjct: 120 GWASNSNYALIGALRAVAQTISYEVTLAIIL------LSTLLMNGSFNLSTLIMTQEHLW 173
Query: 176 ELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAES 235
L P W ++ F+S LA E F++ E E E+ G +EY+ + +AE
Sbjct: 174 LLLP-TWPLAMMW---FISTLA-ETNRTPFDLAEGESELVSGFNIEYAAGPFALFFMAEY 228
Query: 236 IKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTI--------FRTV 287
+ + +L + G N H+ +++ V + KT+ RT
Sbjct: 229 MNIIMMNTLTTMIFL----------GTTYN--AHSPELYTVCFITKTLLLTSLFLWIRTA 276
Query: 288 TGRLKITQAVNLLW 301
R + Q ++LLW
Sbjct: 277 YPRFRYDQLMHLLW 290
>gi|5834858 NADH dehydrogenase subunit 1 [Phoca vitulina]
>gi|128649|sp|Q00505|NU1M_PHOVI NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|284542|pir||S26151 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - harbor
seal mitochondrion >gi|13432|emb|CAA45257.1| (X63726)
NADH dehydrogenase subunit 1 [Phoca vitulina]
Length = 318
Score = 88.2 bits (215), Expect = 1e-16
Identities = 84/311 (27%), Positives = 150/311 (48%), Gaps = 34/311 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
+ +I +I ++L A+++++ +RK++ MQ R GP I LQP D +KL
Sbjct: 4 INIISLIIPILLAVAFLTLV-------ERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLF 56
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE + P T++ MF AP+L L + + PM + PL ++ + + +LA +
Sbjct: 57 TKEPLRPLTSSTTMFIMAPILALALALTMWVPLPMPY-PLINMNLGVLFMLAMSSLAVYS 115
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--E 171
++ +S S Y IGA R VA IS E + + + +V L + F+L +L +
Sbjct: 116 ILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSV------LLMNGSFTLSTLIITQ 169
Query: 172 HNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
+LW +++ A + + F+S LA E F++ E E E+ G VEY+ +
Sbjct: 170 EHLW----LIFPAWPLAMMWFISTLA-ETNRAPFDLTEGESELVSGFNVEYAAGPFAMFF 224
Query: 232 LAESIKEFIAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
LAE I ++ +LF P + + Y++N + T + I+ L + + R
Sbjct: 225 LAE-YANIIMMNIFTTLLFFGAFHNPYMPELYVINFTVKTLALTILFLWIRASY----PR 279
Query: 291 LKITQAVNLLW 301
+ Q ++LLW
Sbjct: 280 FRYDQLMHLLW 290
>gi|5835625 NADH dehydrogenase subunit 1 [Salmo salar]
>gi|6226661|sp|Q37676|NU1M_SALSA NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431943|pir||T09947 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
Atlantic salmon mitochondrion >gi|3775977|gb|AAD04733.1|
(U12143) NADH dehydrogenase subunit 1 [Salmo salar]
>gi|5442048|gb|AAD43226.1|AF115412_1 (AF115412) NADH
dehydrogenase subunit 1 [Salmo salar]
>gi|5442050|gb|AAD43227.1|AF115413_1 (AF115413) NADH
dehydrogenase subunit 1 [Salmo salar]
>gi|5442052|gb|AAD43228.1|AF115414_1 (AF115414) NADH
dehydrogenase subunit 1 [Salmo salar]
>gi|5442054|gb|AAD43229.1|AF115415_1 (AF115415) NADH
dehydrogenase subunit 1 [Salmo salar]
>gi|5442058|gb|AAD43231.1|AF115417_1 (AF115417) NADH
dehydrogenase subunit 1 [Salmo salar]
>gi|5442060|gb|AAD43232.1|AF115418_1 (AF115418) NADH
dehydrogenase subunit 1 [Salmo salar]
>gi|5442062|gb|AAD43233.1|AF115419_1 (AF115419) NADH
dehydrogenase subunit 1 [Salmo salar]
>gi|5442064|gb|AAD43234.1|AF115420_1 (AF115420) NADH
dehydrogenase subunit 1 [Salmo salar]
>gi|7381062|gb|AAF61378.1|AF133701_1 (AF133701) NADH
dehydrogenase subunit 1 [Salmo salar]
Length = 324
Score = 88.2 bits (215), Expect = 1e-16
Identities = 88/307 (28%), Positives = 149/307 (47%), Gaps = 27/307 (8%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSK 56
+I L ++ + V+ ++LL +RK++ MQ R GP I LQP D LKL K
Sbjct: 9 IINPLAYIVPVLLAVAFLTLL----ERKVLGYMQLRKGPNIVGPYGLLQPIADGLKLFIK 64
Query: 57 ETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLI 115
E + P+T++ F+F A P+L LT + L A P+ + P+ ++ + L +LA + ++
Sbjct: 65 EPVRPSTSSPFLFLATPMLALTLALTLWAPMPIPY-PITDLNLGVLFVLALSSLAVYSIL 123
Query: 116 LGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLW 175
+S S Y IGA R VA IS E ++ L + +V+ +Q ++ + ++W
Sbjct: 124 GSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTLQ----TFNVAQESIW 179
Query: 176 ELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAES 235
L P A + ++S LA E F++ E E E+ G VEY+G + LAE
Sbjct: 180 LLVP----AWPLAAMWYISTLA-ETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAE- 233
Query: 236 IKEFIAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKIT 294
+ + + A+LF IP + VNL+ A + +V L + + R +
Sbjct: 234 YANILLMNTLSAILFLGASHIPAFPELTAVNLMTKAALLSVVFLWVRASY----PRFRYD 289
Query: 295 QAVNLLW 301
Q ++L+W
Sbjct: 290 QLMHLVW 296
>gb|AAD20604.1| (AF117717) NADH dehydrogenase subunit 1 [Salmo trutta]
Length = 324
Score = 88.2 bits (215), Expect = 1e-16
Identities = 89/307 (28%), Positives = 148/307 (47%), Gaps = 27/307 (8%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSK 56
V+ L +I + V+ ++LL +RK++ MQ R GP I LQP D LKL K
Sbjct: 9 VVNPLAYIIPILLAVAFLTLL----ERKVLGYMQLRKGPNIVGPYGLLQPIADGLKLFIK 64
Query: 57 ETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLI 115
E I P+T++ F+F A P+L LT + L A P+ + P+ ++ + L +LA + ++
Sbjct: 65 EPIRPSTSSPFLFLATPMLALTLALTLWAPMPIPY-PITDLNLGVLFILALSSLAVYSIL 123
Query: 116 LGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLW 175
+S S Y IGA R VA IS E ++ L + +V+ +Q ++ + ++W
Sbjct: 124 GSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTLQ----TFNVAQESIW 179
Query: 176 ELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAES 235
L P A + ++S LA E F++ E E E+ G VEY+G + LAE
Sbjct: 180 LLVP----AWPLAAMWYISTLA-ETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAE- 233
Query: 236 IKEFIAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKIT 294
+ + + +LF IP + VNL+ A + +V L + + R +
Sbjct: 234 YANILLMNTLSTILFLGASHIPAFPELTAVNLMTKAALLSVVFLWVRASY----PRFRYD 289
Query: 295 QAVNLLW 301
Q ++L+W
Sbjct: 290 QLMHLVW 296
>gb|AAG28216.1|AF304203_1 (AF304203) NADH1 [Sus scrofa]
Length = 318
Score = 88.2 bits (215), Expect = 1e-16
Identities = 83/312 (26%), Positives = 147/312 (46%), Gaps = 48/312 (15%)
Query: 7 LIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETII 60
+I ++L A+++++ +RK++ MQ R GP + LQP D LKL +KE +
Sbjct: 10 IIPILLAVAFLTVV-------ERKVLGYMQLRKGPNVVGPYGLLQPIADALKLFTKEPLR 62
Query: 61 PNTANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVM 119
P T++ MF AP+L L+ + + PM + PL ++ + + +LA + ++
Sbjct: 63 PATSSISMFIIAPILALSLALTMWVPLPMPY-PLINMNLGVLFMLAMSSLAVYSILWSGW 121
Query: 120 SSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--EHNLWEL 177
+S S Y IGA R VA IS E + + + +V L + ++L +L + ++W
Sbjct: 122 ASNSKYALIGALRAVAQTISYEVTLAIILLSV------LLMNGSYTLSTLITTQEHIW-- 173
Query: 178 GPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIK 237
M++ + + + F+S LA E F++ E E E+ G VEY+ + +AE
Sbjct: 174 --MIFTSWPLAMMWFISTLA-ETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFMAE-YA 229
Query: 238 EFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVT--------G 289
I + A+LF P HT +++ + V KT+ T+T
Sbjct: 230 NIIMMNAFTAILFLGASHDP-----------HTPELYTINFVLKTLALTITFLWIRASYP 278
Query: 290 RLKITQAVNLLW 301
R + Q ++LLW
Sbjct: 279 RFRYDQLMHLLW 290
>sp|Q37165|NU1C_ARATH NADH-PLASTOQUINONE OXIDOREDUCTASE CHAIN 1, CHLOROPLAST
>gi|1419474|emb|CAA66944.1| (X98298) ndhA [Arabidopsis
thaliana]
Length = 360
Score = 87.8 bits (214), Expect = 2e-16
Identities = 97/341 (28%), Positives = 157/341 (45%), Gaps = 36/341 (10%)
Query: 1 MKVIYALIGLIL-LYAYV-SIIS--LLFSGIDRKLVARMQRRIGPP------ILQPFYDF 50
+K +Y LI + + +++ V II+ L+ ++R++ A +Q+RIGP ILQ D
Sbjct: 20 LKEVYGLIWIFVPIFSLVLGIITGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADG 79
Query: 51 LKLMSKETIIPNTANF-MFRAAPVLMLTTVIALLAYTPMGFSP---LFATKGDIIVFIYL 106
KL+ KE + P+ N +F P + + ++ LL+Y+ + FS L I ++I +
Sbjct: 80 TKLLFKENLRPSRGNTPLFSIGPSIAVISI--LLSYSVIPFSNHLVLADLNIGIFLWIAI 137
Query: 107 LTLADFFLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSL 166
++A L++ S + Y +G R A IS E + L V ++ + L
Sbjct: 138 SSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLLSNSLSTVDIVEA 197
Query: 167 GSLYEHNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRY 226
S Y W L W + I +S LA E E F++PEAEEE+ G EYSG
Sbjct: 198 QSKYGFWGWNL----WRQPIGFIIFLISSLA-ESERLPFDLPEAEEELIAGYQTEYSGIK 252
Query: 227 LGIIKLAESIKEFIAASLVVAVLF--PWQVGIPGIQ-----------GYIVNLLIHTAKV 273
G+ +A S + +SL V VL+ W + P I + + I AK
Sbjct: 253 FGLFYVA-SYLNLLISSLFVTVLYLGGWNISSPYISILELFQRDQIFATTIGIFITLAKT 311
Query: 274 FIVLLVAKTIFRTVTGRLKITQAVNLLWTRVFAASIVGALL 314
++ L V+ R RL++ Q +NL W + S+ LL
Sbjct: 312 YLFLFVS-IATRWTLPRLRMDQLLNLGWKFLLPISLGNLLL 351
>sp|P92604|NU1M_CANFA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|1809242|gb|AAB41650.1|
(U41443) NADH dehydrogenase subunit 1 [Canis familiaris]
Length = 318
Score = 87.8 bits (214), Expect = 2e-16
Identities = 84/311 (27%), Positives = 151/311 (48%), Gaps = 34/311 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
+ +I +I ++L A+++++ +RK++ MQ R GP I LQP D +KL
Sbjct: 4 INIISLIIPILLAVAFLTLV-------ERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLF 56
Query: 55 SKETIIPNTANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE + P T++ MF AP+L L+ + + + PM + PL ++ + + +LA +
Sbjct: 57 TKEPLRPLTSSMSMFILAPILALSLALTMWSPLPMPY-PLINMNLGVLFMLAMSSLAVYS 115
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--E 171
++ +S S Y IGA R VA IS E + + + +V L + F+L +L +
Sbjct: 116 ILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSV------LLMNGSFTLSTLIITQ 169
Query: 172 HNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
++W +++ A + + F+S LA E F++ E E E+ G VEY+ +
Sbjct: 170 EHMW----LIFPAWPLAMMWFISTLA-ETNRAPFDLTEGESELVSGFNVEYAAGPFALFF 224
Query: 232 LAESIKEFIAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
LAE I +++ VLF P + + Y +N + T ++L + R R
Sbjct: 225 LAE-YANIIMMNILTTVLFFGAFHNPFMPELYSINFTMKT----LLLTICFLWIRASYPR 279
Query: 291 LKITQAVNLLW 301
+ Q ++LLW
Sbjct: 280 FRYDQLMHLLW 290
>gi|5835430 NADH dehydrogenase subunit 1 [Dasypus novemcinctus]
>gi|3122442|sp|O21325|NU1M_DASNO NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431917|pir||T11441 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
nine-banded armadillo mitochondrion
>gi|2252501|emb|CAA72529.1| (Y11832) NADH1 [Dasypus
novemcinctus]
Length = 318
Score = 87.8 bits (214), Expect = 2e-16
Identities = 86/311 (27%), Positives = 149/311 (47%), Gaps = 34/311 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
+ V+ +I ++L A+++++ +RK++ MQ R GP I LQP D +KL
Sbjct: 4 INVLSLIIPILLAVAFLTLL-------ERKILGYMQLRKGPNIVGPYGLLQPIADAIKLF 56
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
KE + P T++ MF AP L LT ++L PM + PL ++ + + +LA +
Sbjct: 57 IKEPLRPATSSKLMFTLAPTLALTLALSLWIPIPMPY-PLVNLNLGVLFILAMSSLAVYS 115
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSL--YE 171
++ +S S Y IGA R VA IS E + + + ++M F+L +L +
Sbjct: 116 ILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIMM------TNGSFTLSTLTTTQ 169
Query: 172 HNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
++W + P+ W ++ F+S LA E F++ E E E+ G VEY+ +
Sbjct: 170 EHMWLIFPL-WPLAMMW---FISTLA-ETNRAPFDLTEGESELVSGFNVEYAAGPFALFF 224
Query: 232 LAESIKEFIAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
LAE I + + A+LF + P + + +NL+ T ++L + R R
Sbjct: 225 LAE-YANIIMMNALTAILFFGAMHNPMFPELHTLNLITKT----LILTMMFLWVRASYPR 279
Query: 291 LKITQAVNLLW 301
+ Q ++LLW
Sbjct: 280 FRYDQLMHLLW 290
>gb|AAB97893.1| (AF036380) NADH dehydrogenase subunit 1 [Thymallus arcticus]
Length = 324
Score = 87.8 bits (214), Expect = 2e-16
Identities = 89/323 (27%), Positives = 156/323 (47%), Gaps = 31/323 (9%)
Query: 7 LIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETII 60
++ ++L A+++++ +RK++ MQ R GP I LQP D LKL KE +
Sbjct: 16 IVPVLLAVAFLTLL-------ERKVLGYMQLRKGPNIVGPYGLLQPIADGLKLFIKEPVR 68
Query: 61 PNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVM 119
P+T++ F+F A P+L LT + L A P+ + P+ ++ + L +LA + ++
Sbjct: 69 PSTSSPFLFLATPMLALTLALTLWAPMPIPY-PVTDLNLGVLFVLALSSLAVYSILGSGW 127
Query: 120 SSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELGP 179
+S S Y IGA R VA IS E ++ L + +V+ +Q ++ + ++W + P
Sbjct: 128 ASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTLQ----TFNIAQESIWLVVP 183
Query: 180 MVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEF 239
W + ++S LA E F+ E E E+ G VEY+G + L E F
Sbjct: 184 -AWPLAALW---YISTLA-ETNRAPFDFTEGESELVSGFNVEYAGGPFALFFLGEYANIF 238
Query: 240 IAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQAVN 298
+ +L A+LF IP + + +NL+ A + +V L + + R + Q ++
Sbjct: 239 LMNTL-SAILFLGATHIPALPELTAMNLMTKAALLSVVFLWERASY----PRFRYDQLIH 293
Query: 299 LLWTRVFAASIVGALLLALGVMI 321
L+W + F + +L L V I
Sbjct: 294 LVW-KSFLPMTLALVLWHLAVPI 315
>gb|AAD20603.1| (AF117716) NADH dehydrogenase subunit 1 [Salmo trutta]
>gi|4426923|gb|AAD20605.1| (AF117718) NADH dehydrogenase
subunit 1 [Salmo trutta] >gi|4426925|gb|AAD20606.1|
(AF117719) NADH dehydrogenase subunit 1 [Salmo trutta]
Length = 324
Score = 87.8 bits (214), Expect = 2e-16
Identities = 88/307 (28%), Positives = 148/307 (47%), Gaps = 27/307 (8%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSK 56
V+ L +I + V+ ++LL +RK++ MQ R GP I LQP D LKL K
Sbjct: 9 VVNPLAYIIPILLAVAFLTLL----ERKVLGYMQLRKGPNIVGPYGLLQPIADGLKLFIK 64
Query: 57 ETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLI 115
E + P+T++ F+F A P+L LT + L A P+ + P+ ++ + L +LA + ++
Sbjct: 65 EPVRPSTSSPFLFLATPMLALTLALTLWAPMPIPY-PITDLNLGVLFILALSSLAVYSIL 123
Query: 116 LGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLW 175
+S S Y IGA R VA IS E ++ L + +V+ +Q ++ + ++W
Sbjct: 124 GSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTLQ----TFNVAQESIW 179
Query: 176 ELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAES 235
L P A + ++S LA E F++ E E E+ G VEY+G + LAE
Sbjct: 180 LLVP----AWPLAAMWYISTLA-ETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAE- 233
Query: 236 IKEFIAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKIT 294
+ + + +LF IP + VNL+ A + +V L + + R +
Sbjct: 234 YANILLMNTLSTILFLGASHIPAFPELTAVNLMTKAALLSVVFLWVRASY----PRFRYD 289
Query: 295 QAVNLLW 301
Q ++L+W
Sbjct: 290 QLMHLVW 296
>gi|5835262 NADH dehydrogenase subunit 1 [Oncorhynchus mykiss]
>gi|1352543|sp|P48174|NU1M_ONCMY NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431942|pir||T09857 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
rainbow trout mitochondrion >gi|463154|gb|AAB03347.1|
(L29771) NADH dehydrogenase subunit 1 [Oncorhynchus
mykiss]
Length = 323
Score = 87.8 bits (214), Expect = 2e-16
Identities = 89/310 (28%), Positives = 148/310 (47%), Gaps = 33/310 (10%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSK 56
VI L ++ + V+ ++LL +RK++ MQ R GP I LQP D LKL K
Sbjct: 8 VINPLAYIVPVLLAVAFLTLL----ERKVLGYMQLRKGPNIVGPYGLLQPIADGLKLFIK 63
Query: 57 ETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLI 115
ET+ P+T++ F+F A P+L LT + L A P+ + P+ ++ + L +LA + ++
Sbjct: 64 ETVRPSTSSPFLFLATPMLALTLALTLWAPMPIPY-PVTDLNLGVLFVLALSSLAVYSIL 122
Query: 116 LGVMSSGSPYGRIGAAREVAMLISREPAM---MLGVFAVMWGISKLGVQKPFSLGSLYEH 172
+S S Y IG R VA IS E ++ +L V + G + ++ +
Sbjct: 123 GSGWASNSKYALIGELRAVAQTISYEVSLGLILLSVIIITGGFT-------LQTFNVAQE 175
Query: 173 NLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKL 232
++W L P A + ++S LA E F++ E E E+ G VEY+G + L
Sbjct: 176 SIWLLVP----AWPLAAMWYISTLA-ETNRAPFDLTEGESELVSGFNVEYAGGPFALFFL 230
Query: 233 AESIKEFIAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRL 291
AE + + + AVLF IP + +NL+ A + +V L + + R
Sbjct: 231 AE-YANILLMNTLSAVLFLGASHIPAFPELTALNLMTKAALLSVVFLWVRASY----PRF 285
Query: 292 KITQAVNLLW 301
+ Q ++L+W
Sbjct: 286 RYDQLMHLVW 295
>gi|11466642 NADH dehydrogenase subunit 1 [Malawimonas jakobiformis]
>gi|10178680|gb|AAG13692.1|AF295546_18 (AF295546) NADH
dehydrogenase subunit 1 [Malawimonas jakobiformis]
Length = 323
Score = 87.8 bits (214), Expect = 2e-16
Identities = 90/330 (27%), Positives = 156/330 (47%), Gaps = 31/330 (9%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
+K+I ++ L+L AY+++ +RK+++ +Q R GP I LQP D LKL
Sbjct: 10 IKIISIIVPLLLGIAYLTLA-------ERKILSAVQIRKGPNIIGFYGVLQPLADGLKLF 62
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLL-TLADF 112
KETI+PN AN +F AP+L + A P + A I++++ + +L +
Sbjct: 63 LKETILPNRANLIIFIIAPILTFSLSFLGWAVIPFNHGLVLADLNIGILYLFAVSSLGVY 122
Query: 113 FLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEH 172
+I +S S Y +G+ R A +IS E ++ L + +V+ L + + L +
Sbjct: 123 GIITSGWASNSKYAFLGSLRSTAQMISYEVSIGLILISVLLCSGSLNLTQIV----LSQK 178
Query: 173 NLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKL 232
++W + P+ + + F+S LA E F++PE E EI G VEYS + L
Sbjct: 179 SVWYMIPLF----PLFVLFFISILA-ETNRPPFDLPEGESEIVAGYNVEYSSMGSALFFL 233
Query: 233 AESIKEFIAASL-VVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRL 291
E + +SL VV + W I ++ N+L + KV L + + R R
Sbjct: 234 GEYGNIILMSSLCVVLFVGGWLSPI----FFLPNILAFSIKVLFFLFLF-ILVRATYPRY 288
Query: 292 KITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ Q + L W ++F + ++ G++I
Sbjct: 289 RYDQLMRLGW-KIFLPISLAFVIFISGLLI 317
>gi|5835779 NADH dehydrogenase subunit 1 [Carassius auratus]
>gi|6647593|sp|O78679|NU1M_CARAU NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|3288687|dbj|BAA31238.1|
(AB006953) NADH dehydrogenase subunit 1 [Carassius
auratus]
Length = 324
Score = 87.4 bits (213), Expect = 2e-16
Identities = 88/303 (29%), Positives = 148/303 (48%), Gaps = 30/303 (9%)
Query: 7 LIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETII 60
++ ++L A++++I +RK++ MQ R GP + LQP D +KL KE +
Sbjct: 16 IVPVLLAVAFLTLI-------ERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVR 68
Query: 61 PNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVM 119
P+T++ F+F AAPVL LT + L A PM P+ I+ + L +LA + ++
Sbjct: 69 PSTSSPFLFLAAPVLALTLAMTLWAPMPMP-HPVTDLNLGILFILALSSLAVYSILGSGW 127
Query: 120 SSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELGP 179
+S S Y IGA R VA IS E ++ L + +V+ +Q + + ++W L P
Sbjct: 128 ASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFSGGYTLQ----TFNTTQESIWLLIP 183
Query: 180 MVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEF 239
A + ++S LA E F++ E E E+ G VEY+G + LAE
Sbjct: 184 ----AWPLAAMWYISTLA-ETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAE-YANI 237
Query: 240 IAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQAVN 298
+ + + AVLF IP + + +NL+ A + I+ L + + R + Q ++
Sbjct: 238 LLMNTLSAVLFLGASHIPNMPELTTINLMTKAALLSILFLWVRASY----PRFRYDQLMH 293
Query: 299 LLW 301
L+W
Sbjct: 294 LVW 296
>gb|AAG28203.1|AF304202_1 (AF304202) NADH1 [Sus scrofa]
Length = 318
Score = 87.4 bits (213), Expect = 2e-16
Identities = 82/318 (25%), Positives = 149/318 (46%), Gaps = 48/318 (15%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
+ ++ +I ++L A+++++ +RK++ MQ R GP + LQP D LKL
Sbjct: 4 INILSLIIPILLAVAFLTLV-------ERKVLGYMQLRKGPNVVGPYGLLQPIADALKLF 56
Query: 55 SKETIIPNTANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE + P T++ MF AP+L L+ + + PM + PL ++ + + +LA +
Sbjct: 57 TKEPLRPATSSISMFIIAPILALSLALTMWVPLPMPY-PLINMNLGVLFMLAMSSLAVYS 115
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--E 171
++ +S S Y IG R VA IS E + + + +V L + ++L +L +
Sbjct: 116 ILWSGWASNSKYALIGVLRAVAQTISYEVTLAIILLSV------LLMNGSYTLSTLITTQ 169
Query: 172 HNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
++W M++ + + + F+S LA E F++ E E E+ G VEY+ +
Sbjct: 170 EHIW----MIFTSWPLAMMWFISTLA-ETNRAPFDLTEGESELVSGFNVEYAAGPFAMFF 224
Query: 232 LAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVT--- 288
+AE I + A+LF P HT +++ + V KT+ T+T
Sbjct: 225 MAE-YANIIMMNAFTAILFLGASHDP-----------HTPELYTINFVLKTLALTITFLW 272
Query: 289 -----GRLKITQAVNLLW 301
R + Q ++LLW
Sbjct: 273 IRASYPRFRYDQLMHLLW 290
>gi|5835024 NADH dehydrogenase subunit 1 [Cyprinus carpio]
>gi|128638|sp|P24969|NU1M_CYPCA NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|422562|pir||S36002 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - common
carp mitochondrion >gi|12834|emb|CAA43332.1| (X61010)
NADH ubiquinone oxidoreductase subunit 1 [Cyprinus
carpio]
Length = 324
Score = 87.0 bits (212), Expect = 3e-16
Identities = 87/303 (28%), Positives = 148/303 (48%), Gaps = 30/303 (9%)
Query: 7 LIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETII 60
++ ++L A++++I +RK++ MQ R GP + LQP D +KL KE +
Sbjct: 16 IVPVLLAVAFLTLI-------ERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIKEPVR 68
Query: 61 PNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVM 119
P+T++ F+F AAPVL LT + L A PM P+ I+ + L +LA + ++
Sbjct: 69 PSTSSPFLFLAAPVLALTLAMTLWAPMPMP-HPVTDLNLGILFILALSSLAVYSILGSGW 127
Query: 120 SSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELGP 179
+ S Y IGA R VA IS E ++ L + +V+ +Q ++ + ++W L P
Sbjct: 128 ALNSKYALIGALRAVAQTISYEVSLGLILLSVIIFSGGYTLQ----TFNITQESIWLLIP 183
Query: 180 MVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEF 239
A + ++S LA E F++ E E E+ G VEY+G + LAE
Sbjct: 184 ----AWPLAAMWYISTLA-ETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAE-YANI 237
Query: 240 IAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQAVN 298
+ + + AVLF IP + + +NL+ A + I+ L + + R + Q ++
Sbjct: 238 LLMNTLSAVLFLGASHIPSVPELTTINLMTKAALLSIMFLWVRASY----PRFRYDQLMH 293
Query: 299 LLW 301
L+W
Sbjct: 294 LVW 296
>gi|11467596 NADH dehydrogenase, subunit 1 [Allomyces macrogynus]
>gi|2147751|pir||S63660 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - Allomyces macrogynus
mitochondrion >gi|1236426|gb|AAC49243.1| (U41288) NADH
dehydrogenase, subunit 1 [Allomyces macrogynus]
Length = 332
Score = 87.0 bits (212), Expect = 3e-16
Identities = 87/324 (26%), Positives = 155/324 (46%), Gaps = 41/324 (12%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGP------PILQPFYDFLKLMSK 56
VI +++ ++L AY ++ +RK++ MQRR+GP +LQP D KL+ K
Sbjct: 19 VILSIVVVLLAVAYATLA-------ERKVMGSMQRRLGPNKVGIYGLLQPLADGGKLLLK 71
Query: 57 ETIIPNTANF-MFRAAPVLMLTTVIALLAYTPMGF---SPLFATKGDIIVFIYLLTLADF 112
ET+IP+ AN +F AP+ LT + +LL + + F + +F T I+ + + +L +
Sbjct: 72 ETVIPSHANLGLFLLAPI--LTLIFSLLGWMIIPFNNTTVIFDTPLGILFVLAISSLGIY 129
Query: 113 FLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEH 172
+I ++ S Y +G+ R A +IS E + L + V++ LG + + +
Sbjct: 130 GVIFSGWAANSKYAFLGSLRSTAQMISYEVVLGLIILTVVF---CLGDAPNINQIVISQK 186
Query: 173 NLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKL 232
+W + P+ + I F+S LA E F++PEAE E+ G E+S L
Sbjct: 187 AIWYIIPLAPLG----IMFFISALA-ETNRPPFDLPEAESELVAGYFTEHSAMPFAYFFL 241
Query: 233 AESIKEFIAASLVVAVLF------PWQVGIPG-IQGYIVNLLIHTAKVFIVLLVAKTIFR 285
E + ++L V +LF P +PG + +I+ L + + +F + + F
Sbjct: 242 GEYSSILLISTLTV-ILFLGGWWTPLGFLLPGSLSSFILGLKV--SFIFFTFIWVRATF- 297
Query: 286 TVTGRLKITQAVNLLWTRVFAASI 309
R K TQ + + WT + ++
Sbjct: 298 ---PRWKYTQLIVICWTSLLPLTL 318
>gi|11499419 F420H2:quinone oxidoreductase, 41.2 kDa subunit, putative
[Archaeoglobus fulgidus] >gi|7431961|pir||F69478 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 AF1831
[similarity] - Archaeoglobus fulgidus
>gi|2648714|gb|AAB89419.1| (AE000976) F420H2:quinone
oxidoreductase, 41.2 kDa subunit, putative
[Archaeoglobus fulgidus]
Length = 369
Score = 87.0 bits (212), Expect = 3e-16
Identities = 91/347 (26%), Positives = 163/347 (46%), Gaps = 44/347 (12%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGI-----------DRKLVARMQRRIGP-----PI--- 43
+I L+ LIL + ++I + G+ +RKL AR+Q R+GP PI
Sbjct: 38 LINILVALILWKPFFAVIIMPGLGVLTLYLLYIVWYERKLTARIQWRVGPLEVARPIRGA 97
Query: 44 LQPFYDFLKLMSKETIIPNTANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIV 102
+Q D ++ +E I+ A+ F P+L V+ + + P G + T I +
Sbjct: 98 IQALADGIRYFFQEAIVHREAHRPYFVQLPILAFIPVLLPIMFIPAGSAVGIYTPNAIQL 157
Query: 103 FIYLLTLADFFLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMW----GISKL 158
+ + L ++ +S S + IG+ RE M + E ++ V ++++ G + +
Sbjct: 158 TVTFIALIPITIVAIGWASNSRFAYIGSVREAFMYFAYEVPFIIAVISMIFLYGSGDAYV 217
Query: 159 GVQKPFSL-GSLYEHNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEG 217
V+K ++ G+L L P+ ++ +I + + S L F IPEA++EIA G
Sbjct: 218 AVEKQSAIPGAL-------LNPIAFIVYLIAMLMATSRLP-------FEIPEADQEIAFG 263
Query: 218 TLVEYSGRYLGIIKLAESIKEFIAASLVVAVLF--PWQVGIPGIQGYIVNLLIHTAKVFI 275
VEYSG G++ + K +I +L+ +LF W + G + L K +
Sbjct: 264 PFVEYSGILFGLVMVLAYEKLYI-MTLLFTILFLGGWSGIYCPLLGDLNGPLWMFIKTIV 322
Query: 276 VLLVAKTIFRTVTGRLKITQAVNLLWTRVFAASIVGALL-LALGVMI 321
V+ + I R++ R ++ QA+ + WT + A SIV ++ ALGV +
Sbjct: 323 VISIL-VIVRSIYARYRLDQALRIGWTSMLALSIVALVVGGALGVWL 368
>gi|6137802 NADH dehydrogenase subunit 1 [Loxodonta africana]
>gi|11253208|pir||T45550 NADH dehydrogenase subunit 1
[imported] - African elephant mitochondrion
>gi|5852104|emb|CAA12138.1| (AJ224821) NADH
dehydrogenase subunit 1 [Loxodonta africana]
Length = 318
Score = 87.0 bits (212), Expect = 3e-16
Identities = 82/311 (26%), Positives = 145/311 (46%), Gaps = 34/311 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLM 54
+ V+ + ++L A+++++ +RK + MQ R GP +LQP D +KL
Sbjct: 4 INVLTVTLPILLAVAFLTLV-------ERKALGYMQLRKGPNVVGPYGLLQPIADAIKLF 56
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE I P T++ F+F AP+L LT + + A PM + PL ++ + + +L +
Sbjct: 57 TKEPIYPQTSSKFLFTVAPILALTLALTVWAPLPMPY-PLINLNLSLLFILAMSSLMVYS 115
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
++ +S S Y +GA R VA IS E +M + + + + ++ + +
Sbjct: 116 ILWSGWASNSKYALMGALRAVAQTISYEVSMT----TITLSMVLMNGSFTLTAFAMTQEH 171
Query: 174 LWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLA 233
LW + PM W +++ F S LA E F++ E E E+ G VEYS + +A
Sbjct: 172 LWLILPM-W---PLMMMWFTSTLA-ETNRAPFDLTEGESELVSGFNVEYSAGPFALFFMA 226
Query: 234 ESIKEFIAASLVVAVLF---PWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
E I + + +LF + +P I +N ++ T I+L + R R
Sbjct: 227 E-YANIIMMNALTVILFMGTSYDPQMPEIS--TINFVMKT----IILTICFLWVRASYPR 279
Query: 291 LKITQAVNLLW 301
+ Q ++LLW
Sbjct: 280 FRYDQLMHLLW 290
>gi|11466917 NADH-ubiquinone oxidoreductase subunit 1 [Podospora anserina]
>gi|400638|sp|P19041|NU1M_PODAN NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|1334564|emb|CAA38809.1|
(X55026) NADH-ubiquinone oxidoreductase subunit 1
[Podospora anserina]
Length = 367
Score = 86.6 bits (211), Expect = 4e-16
Identities = 72/260 (27%), Positives = 122/260 (46%), Gaps = 29/260 (11%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLM 54
++V+ L+ +L AYV+I +RK +A MQRR+GP +LQ F D LKL+
Sbjct: 10 IEVVLVLVPALLGIAYVTIA-------ERKTMASMQRRLGPNFVGYYGLLQAFADALKLL 62
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLL---TLA 110
KE + P AN +F PV +T + +LL Y + + P A + Y+L +LA
Sbjct: 63 LKEYVAPTQANIILFFLGPV--ITLIFSLLGYAVIPYGPSLAINDFSLGIYYILAVSSLA 120
Query: 111 DFFLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY 170
+ ++L S+ S Y +G+ R A LIS E + + V+ L + S+
Sbjct: 121 TYGILLAGWSANSKYAFLGSLRSTAQLISYELVLSSAILLVIMLTGSLNL----SVNIES 176
Query: 171 EHNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+ +W + P++ V +F +E F++ EAE E+ G + E++
Sbjct: 177 QRAIWNIFPLLPV-----FIIFFIGSVAETNRAPFDLAEAESELVSGFMTEHAAVVFVFF 231
Query: 231 KLAESIKEFIAASLVVAVLF 250
LAE + ++ ++LF
Sbjct: 232 FLAE-YGSIVLMCILTSILF 250
>gi|5835332 NADH dehydrogenase subunit 1 [Rhinoceros unicornis]
>gi|2499234|sp|Q96189|NU1M_RHIUN NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431950|pir||T11247 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
greater Indian rhinoceros mitochondrion
>gi|1666194|emb|CAA66001.1| (X97336) NADH subunit 1
[Rhinoceros unicornis]
Length = 318
Score = 86.6 bits (211), Expect = 4e-16
Identities = 83/304 (27%), Positives = 144/304 (47%), Gaps = 27/304 (8%)
Query: 8 IGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETIIP 61
I ++LL + + + ++RK++ MQ R GP I LQP D +KL +KE + P
Sbjct: 4 INILLLIIPILLAVAFLTLVERKVLGYMQLRKGPNIVGPYGLLQPIADAIKLFTKEPLQP 63
Query: 62 NTANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVMS 120
+T++ MF AP++ LT + + PM PL ++ + + +LA + ++ +
Sbjct: 64 STSSTSMFIIAPIMALTLALTMWVPLPMPH-PLINMNLGVLFMLAMSSLAVYSILWSGWA 122
Query: 121 SGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--EHNLWELG 178
S S Y IGA R VA IS E + + + +V L + F+L +L + +LW
Sbjct: 123 SNSKYALIGALRAVAQTISYEVTLAIILLSV------LLMNGSFTLSTLITTQEHLW--- 173
Query: 179 PMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKE 238
+++ + + + F+S LA E F++ E E E+ G VEY+ + +AE
Sbjct: 174 -LIFPSWPLTMMWFISTLA-ETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAE-YTN 230
Query: 239 FIAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQAV 297
I + +LF P + + Y VN I T ++L ++ R R + Q +
Sbjct: 231 IIMMNAFTTILFLGAFHNPYMPELYTVNFTIKT----LLLTISFLWIRASYPRFRYDQLM 286
Query: 298 NLLW 301
+LLW
Sbjct: 287 HLLW 290
>gb|AAB97890.1| (AF036377) NADH dehydrogenase subunit 1 [Thymallus arcticus]
>gi|2815640|gb|AAB97892.1| (AF036379) NADH dehydrogenase
subunit 1 [Thymallus arcticus]
Length = 324
Score = 86.6 bits (211), Expect = 4e-16
Identities = 83/303 (27%), Positives = 148/303 (48%), Gaps = 30/303 (9%)
Query: 7 LIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETII 60
++ ++L A+++++ +RK++ MQ R GP I LQP D LKL KE +
Sbjct: 16 IVPVLLAVAFLTLL-------ERKVLGYMQLRKGPNIVGPYGLLQPIADGLKLFIKEPVR 68
Query: 61 PNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVM 119
P+T++ F+F A P+L LT + L A P+ + P+ ++ + L +LA + ++
Sbjct: 69 PSTSSPFLFLATPMLALTLALTLWAPMPIPY-PVTDLNLGVLFVLALSSLAVYSILGSGW 127
Query: 120 SSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELGP 179
+S S Y IGA R VA IS E ++ L + +V+ +Q ++ + ++W + P
Sbjct: 128 ASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTLQ----TFNIAQESIWLVVP 183
Query: 180 MVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEF 239
W + ++S LA E F+ E E E+ G VEY+G + LAE
Sbjct: 184 -AWPLAALW---YISTLA-ETNRAPFDFTEGESELVSGFNVEYAGGPFALFFLAE-YANI 237
Query: 240 IAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQAVN 298
+ + + A+LF IP + + +NL+ A + +V L + + R + Q ++
Sbjct: 238 LLMNTLSAILFLGATHIPALPELTAMNLMTKAALLSVVFLWVRASY----PRFRYDQLMH 293
Query: 299 LLW 301
L+W
Sbjct: 294 LVW 296
>gi|5835527 NADH dehydrogenase subunit 1 [Oryctolagus cuniculus]
>gi|6093556|sp|O79427|NU1M_RABIT NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431946|pir||T11480 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - rabbit
mitochondrion (fragment) >gi|3293007|emb|CAA04847.1|
(AJ001588) NADH dehydrogenase subunit 1 [Oryctolagus
cuniculus]
Length = 318
Score = 86.6 bits (211), Expect = 4e-16
Identities = 90/313 (28%), Positives = 142/313 (44%), Gaps = 43/313 (13%)
Query: 7 LIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETII 60
LI +LL V + + ++RK++ MQ R GP I LQP D +KL +KE +
Sbjct: 3 LINTLLLILPVLLAMAFLTLVERKILGYMQLRKGPNIVGPYGLLQPIADAIKLFTKEPLR 62
Query: 61 PNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVM 119
P T++ +F AP L LT +++ PM + PL I+ + +LA + ++
Sbjct: 63 PLTSSPLLFIIAPTLALTLALSMWLPIPMPY-PLVNLNMGILFILATSSLAVYSILWSGW 121
Query: 120 SSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--EHNLWEL 177
+S S Y GA R VA IS E + + + + L + F+L SL + +W L
Sbjct: 122 ASNSKYALFGALRAVAQTISYEVTLAIILLCI------LLMNGSFTLSSLITTQEYMWIL 175
Query: 178 GPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIK 237
P A + + F+S LA E F++ E E E+ G VEY+G + LAE
Sbjct: 176 LP----AWPLAMMWFISTLA-ETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAE-YT 229
Query: 238 EFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHT-AKVFIVLLVAKTIFRTVT-------- 288
I + + A+LF + + HT ++F V KT+ T+T
Sbjct: 230 NIILMNALTAILF------------LGSFHSHTNPEMFTVNFATKTLLLTMTFLWIRASY 277
Query: 289 GRLKITQAVNLLW 301
R + Q ++LLW
Sbjct: 278 PRFRYDQLMHLLW 290
>gi|5835653 NADH dehydrogenase subunit 1 [Canis familiaris]
>gi|7431918|pir||T11493 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - dog mitochondrion
>gi|4154171|gb|AAD04763.1| (U96639) NADH dehydrogenase
subunit 1 [Canis familiaris]
Length = 318
Score = 86.6 bits (211), Expect = 4e-16
Identities = 83/311 (26%), Positives = 150/311 (47%), Gaps = 34/311 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
+ +I +I ++L A+++++ +RK++ MQ R GP I LQP D +KL
Sbjct: 4 INIISLIIPILLAVAFLTLV-------ERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLF 56
Query: 55 SKETIIPNTANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE + P T++ MF AP+L L+ + + PM + PL ++ + + +LA +
Sbjct: 57 TKEPLRPLTSSMSMFILAPILALSLALTMWIPLPMPY-PLINMNLGVLFMLAMSSLAVYS 115
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--E 171
++ +S S Y IGA R VA IS E + + + +V L + F+L +L +
Sbjct: 116 ILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSV------LLMNGSFTLSTLIITQ 169
Query: 172 HNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
++W +++ A + + F+S LA E F++ E E E+ G VEY+ +
Sbjct: 170 EHMW----LIFPAWPLAMMWFISTLA-ETNRAPFDLTEGESELVSGFNVEYAAGPFALFF 224
Query: 232 LAESIKEFIAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
LAE I +++ +LF P + + Y +N + T ++L + R R
Sbjct: 225 LAE-YANIIMMNILTTILFFGAFHNPFMPELYSINFTMKT----LLLTICFLWIRASYPR 279
Query: 291 LKITQAVNLLW 301
+ Q ++LLW
Sbjct: 280 FRYDQLMHLLW 290
>gi|5835975 NADH dehydrogenase subunit 1 [Vidua chalybeata]
>gi|7431927|pir||T11193 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - Vidua chalybeata mitochondrion
>gi|4894502|gb|AAD32525.1|AF090341_1 (AF090341) NADH
dehydrogenase subunit I [Vidua chalybeata]
Length = 325
Score = 86.6 bits (211), Expect = 4e-16
Identities = 91/307 (29%), Positives = 152/307 (48%), Gaps = 36/307 (11%)
Query: 10 LILLYAYVSIISLLF-SGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETIIPN 62
++L YA +I++ F + ++RK+++ MQ R GP I LQP D +KL KE I P+
Sbjct: 12 MVLSYALPILIAVAFLTLVERKILSYMQNRKGPNIVGPFGLLQPLADGIKLFIKEPIRPS 71
Query: 63 TAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVMSS 121
T++ +F P+L LT I++ P+ FS G I+ + + +LA + ++ +S
Sbjct: 72 TSSPILFIITPMLALTLAISIWVPLPLPFSLADLNLG-ILFMLAMSSLAVYSILWSGWAS 130
Query: 122 GSPYGRIGAAREVAMLISREPAMMLGVFAVM-----WGISKLGV-QKPFSLGSLYEHNLW 175
S Y IGA R VA IS E + + + AV+ + +S L V Q+P L W
Sbjct: 131 NSKYALIGALRAVAQTISYEVTLAIILLAVILLSGNFTLSALAVTQEPMYL----IFPCW 186
Query: 176 ELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAES 235
L M+W ++S LA E F++ E E E+ G VEY+ + LAE
Sbjct: 187 PLA-MMW---------YISTLA-ETNRAPFDLTEGESELVSGFNVEYAAGPFALFFLAE- 234
Query: 236 IKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIF-RTVTGRLKIT 294
+ + + A+LF + + G+Q + +++ T ++LL A ++ R R +
Sbjct: 235 YANIMLMNTLTAILF-FNPSLLGLQQELFPVVLATK---VLLLSAGFLWVRASYPRFRYD 290
Query: 295 QAVNLLW 301
Q ++LLW
Sbjct: 291 QLMHLLW 297
>gi|9997001 NADH dehydrogenase subunit 1 [Tupaia belangeri]
>gi|9957734|gb|AAG09451.1|AF217811_1 (AF217811) NADH
subunit 1 [Tupaia belangeri]
Length = 318
Score = 86.6 bits (211), Expect = 4e-16
Identities = 86/318 (27%), Positives = 147/318 (46%), Gaps = 27/318 (8%)
Query: 7 LIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETII 60
LI L+LL V + + ++RK++ MQ R GP + LQPF D +KL KE +
Sbjct: 3 LINLLLLILPVILAMAFLTLVERKVLGYMQLRKGPNVVGPFGLLQPFADAMKLFIKEPLR 62
Query: 61 PNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVM 119
P T++ M F AP+L L+ +++ PM PL I+ + + +L + ++
Sbjct: 63 PLTSSSMLFVTAPILALSLALSMWIPMPMP-HPLINLNMGILFILAMSSLGVYSILWSGW 121
Query: 120 SSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--EHNLWEL 177
+S S Y IGA R VA IS E + + + V L + F+L +L + +W +
Sbjct: 122 ASNSKYALIGALRAVAQTISYEVTLAIILLCV------LLMSGSFTLSTLITTQEYMWLI 175
Query: 178 GPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIK 237
P W ++ F+S LA E F++ E E E+ G VEY+ + +AE +
Sbjct: 176 IP-TWPLAMMW---FISTLA-ETNRAPFDLAEGESELVSGFNVEYAAGPFALFFMAEYMN 230
Query: 238 EFIAASLVVAV-LFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQA 296
+ +L + L P+ + + Y +N + T + IV L + + R + Q
Sbjct: 231 IIMMNALTTTIFLGPFHDNLMP-ELYTINFTVKTLLLTIVFLWIRASY----PRFRYDQL 285
Query: 297 VNLLWTRVFAASIVGALL 314
++LLW ++ +L
Sbjct: 286 MHLLWKSFLPLTLAMCML 303
>sp|O78695|NU1M_CEBAP NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3399716|dbj|BAA32098.1|
(AB010973) NADH dehydrogenase subunit 1 [Cebus apella]
Length = 318
Score = 86.2 bits (210), Expect = 5e-16
Identities = 85/310 (27%), Positives = 138/310 (44%), Gaps = 35/310 (11%)
Query: 8 IGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLMSKETIIP 61
I L+LL I + ++RK++ MQ R GP +LQP D +KL +KE ++P
Sbjct: 4 INLLLLITPALIAMAFLTLMERKILGYMQLRKGPNTVGPYGVLQPIADAMKLFTKEPLLP 63
Query: 62 N-TANFMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVMS 120
+ + ++ AAP L LT + L PM +S + G ++ + +LA + ++ +
Sbjct: 64 SVSTTTLYMAAPTLALTIALLLWTPLPMPYSLINFNLG-LLFVLATSSLAVYSILWSGWA 122
Query: 121 SGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--EHNLWELG 178
S S Y IGA R VA IS GV + +S L + F+L SL + W L
Sbjct: 123 SNSNYALIGALRAVAQTIS------YGVTLAIILLSTLLMSGSFNLHSLITTQEQSWLLL 176
Query: 179 P-----MVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLA 233
P M+W F+S LA E F++ E E E+ G +EY+ + +A
Sbjct: 177 PSWPLTMMW---------FISTLA-ETNRAPFDLTEGESELISGFNIEYAAGSFALFFMA 226
Query: 234 ESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKI 293
E + + +L + + + Y +N + T + I+ L RT R +
Sbjct: 227 EYMNIIMMNALTTTIFTATPYNMLTTELYTMNFMTKTLLLTILFL----WIRTAYPRFRY 282
Query: 294 TQAVNLLWTR 303
Q + LLW +
Sbjct: 283 DQLMYLLWKK 292
>gi|11386119 NADH dehydrogenase subunit 1 [Pteropus dasymallus]
>gi|11231067|dbj|BAB18172.1| (AB042770) NADH
dehydrogenase subunit 1 [Pteropus dasymallus]
Length = 318
Score = 86.2 bits (210), Expect = 5e-16
Identities = 90/311 (28%), Positives = 143/311 (45%), Gaps = 39/311 (12%)
Query: 7 LIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETII 60
+I L+ + + + + I+RK++ MQ R GP + LQP D LKL +KE +
Sbjct: 3 MINLLTMIVPILLAVAFLTLIERKVLGYMQLRKGPNVVGPYGLLQPMADALKLFTKEPLR 62
Query: 61 PNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVM 119
P ++ MF AP++ LT + + PM PL ++ + + +LA + ++
Sbjct: 63 PLASSPSMFIIAPIMALTLALTMWIPLPMPH-PLINMNLAVLFMLAMSSLAVYSILWSGW 121
Query: 120 SSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSL---YEH---- 172
+S S Y IGA R VA IS E + + + +V L + FSL +L EH
Sbjct: 122 ASNSKYALIGAMRAVAQTISYEVTLAIILLSV------LLLSGSFSLSTLIITQEHAWLM 175
Query: 173 -NLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
+ W L M+W F+S LA E F++ E E E+ G VEY+G +
Sbjct: 176 LSSWPLA-MMW---------FISTLA-ETNRAPFDLTEGESELVSGFNVEYAGGPFALFF 224
Query: 232 LAESIKEFIAASLVVAVLFPWQVGIP-GIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
+AE I + + A+LF P + Y +NL+I T ++L V R R
Sbjct: 225 MAE-YANIIMMNTLTAILFTGAFHNPLTPELYTINLIIKT----LLLTVFFLWIRASYPR 279
Query: 291 LKITQAVNLLW 301
+ Q ++LLW
Sbjct: 280 FRYDQLMHLLW 290
>sp|O78694|NU1M_SAGOE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3399714|dbj|BAA32097.1|
(AB010972) NADH dehydrogenase subunit 1 [Saguinus
oedipus]
Length = 318
Score = 85.8 bits (209), Expect = 6e-16
Identities = 85/308 (27%), Positives = 144/308 (46%), Gaps = 41/308 (13%)
Query: 10 LILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETIIP-N 62
+++L A V++ L + +RK++ MQ R GP I LQP D +KL +KE ++P +
Sbjct: 8 VVILSALVAMAFLTLT--ERKVLGYMQFRKGPNIVGPYGTLQPIADAMKLFTKEPLLPTS 65
Query: 63 TANFMFRAAPVLMLTTVIALLAYTPMGFS-PLFATKGDIIVFIYLLTLADFFLILGVMSS 121
+ + ++ AP L L+ I+LL +TP+ PL ++ + +LA + ++ +S
Sbjct: 66 STSTLYLIAPTLALS--ISLLLWTPLPMPYPLMNFNLGLLFILATSSLAVYSILWSGWAS 123
Query: 122 GSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELGP-- 179
S Y IGA R VA IS E + + + +V+ +Q SL + EH+ W L P
Sbjct: 124 NSNYALIGALRAVAQTISYEVTLAIILLSVLLMSGSFNLQ---SLITTQEHS-WLLFPSW 179
Query: 180 ---MVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESI 236
M+W F+S LA E F++ E E E+ G +EY+ + +AE +
Sbjct: 180 PLAMMW---------FISTLA-ETNRAPFDLTEGESELVSGFNIEYAAGSFALFFMAEYM 229
Query: 237 KEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIF---RTVTGRLKI 293
+ +L + + Y +N + T L+ T+F RT R +
Sbjct: 230 NIIMMNALTTTIFLAAPHNTAAPETYTINFMTKT-------LLLTTLFLWIRTAYPRFRY 282
Query: 294 TQAVNLLW 301
Q ++LLW
Sbjct: 283 DQLMHLLW 290
>sp|O78710|NU1M_PERGU NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3401925|dbj|BAA32119.1|
(AB011227) NADH dehydrogenase subunit 1 [Perameles
gunnii]
Length = 318
Score = 85.8 bits (209), Expect = 6e-16
Identities = 86/302 (28%), Positives = 145/302 (47%), Gaps = 28/302 (9%)
Query: 11 ILLYAYVSIISLLF-SGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETIIPNT 63
+LLY ++++ F + I+RK++ MQ R GP I LQPF D +KL +KE + P T
Sbjct: 6 LLLYIVPILLAVAFLTLIERKVLGYMQFRKGPNIVGPYGLLQPFADAVKLFTKEPLRPLT 65
Query: 64 ANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVMSSG 122
++ MF AP+L LT + + PM +S + G ++ + L L+ + ++ +S
Sbjct: 66 SSISMFIIAPILALTLALTIWVPLPMPYSLIDLNMG-LLFILALSGLSVYSILWSGWASN 124
Query: 123 SPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--EHNLWELGPM 180
S Y IGA R VA IS E + + + ++M + F+L +L + N+W +
Sbjct: 125 SKYALIGALRAVAQTISYEVTLAIILLSIML------INGSFTLKTLITTQENMW----L 174
Query: 181 VWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEFI 240
+ + + ++S LA E F++ E E E+ G VEY+ + LAE I
Sbjct: 175 IVTTWPLAMMWYISTLA-ETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFLAE-YANII 232
Query: 241 AASLVVAVLFPWQVGIPGIQGYI-VNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQAVNL 299
+ + +LF +G Q + +N L K + +V I R R + Q ++L
Sbjct: 233 VMNAMTTILF---LGTSINQNFTHLNTLSFMMKTLTLTIVFLWI-RASYPRFRYDQLMHL 288
Query: 300 LW 301
LW
Sbjct: 289 LW 290
>gb|AAF66628.1| (AF142998) NADH dehydrogenase subunit 1 [Pteronotus parnellii]
Length = 297
Score = 85.8 bits (209), Expect = 6e-16
Identities = 83/305 (27%), Positives = 143/305 (46%), Gaps = 27/305 (8%)
Query: 7 LIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETII 60
LI L+ + + + + ++RK++ MQ R GP + LQP D +KL +KE +
Sbjct: 3 LINLLSMIVPILLAVAFLTLVERKILGYMQLRKGPNVVGPHGLLQPIADAVKLFTKEPLR 62
Query: 61 PNTANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVM 119
P T++ MF AP+L LT + + PM PL ++ + + +LA + ++
Sbjct: 63 PLTSSITMFIIAPILALTLALTMWVPLPMPH-PLINMNLGVLFMLAMSSLAVYAILWSGW 121
Query: 120 SSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--EHNLWEL 177
+S S Y IGA R VA IS E + + + +V L + ++L +L + +W +
Sbjct: 122 ASNSKYALIGALRAVAQTISYEVTLAIILLSV------LLMNGSYTLSTLITTQEYMWLI 175
Query: 178 GPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIK 237
P A + + F+S LA E F++ E E E+ G VEY+G + LAE
Sbjct: 176 IP----AWPLAMMWFISTLA-ETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAE-YA 229
Query: 238 EFIAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQA 296
I + + +LF P + + Y N ++ T ++L ++ R R + Q
Sbjct: 230 NIIMMNALTTILFLGAYNNPIMPELYTTNFMVKT----LLLTMSFLWIRASYPRFRYDQL 285
Query: 297 VNLLW 301
++LLW
Sbjct: 286 MHLLW 290
>pir||E70419 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoH2 -
Aquifex aeolicus >gi|2983789|gb|AAC07347.1| (AE000737)
NADH dehydrogenase I chain H [Aquifex aeolicus]
Length = 259
Score = 85.4 bits (208), Expect = 8e-16
Identities = 72/254 (28%), Positives = 121/254 (47%), Gaps = 30/254 (11%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
+ +++A+I ++++ I + ++RK+ A +QRR GP + LQP + LKL+
Sbjct: 6 INLLFAVIKIVVILLIALGIGAFLTWVERKVAAHIQRRPGPMVVGWHGLLQPLANGLKLL 65
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKG--------DIIVFIY 105
+KE + P + F++ A +L L V A L ++ + F P F G D+ V +
Sbjct: 66 TKEDLFPRYGDKFLYHLAIILAL--VPATLVFSVVPFGPEFEVFGYKVKPILSDVNVGLL 123
Query: 106 LL----TLADFFLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQ 161
L+ ++A + + L +S S Y I + R+ +L+S E + FAVM I G
Sbjct: 124 LVFALGSMAVYAVALAGWASNSKYPLIASMRKAGVLVSYEVVI---TFAVMGPIMLAGTL 180
Query: 162 KPFSL-GSLYEHNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLV 220
+ + E NLW +WV + + + LA V F ++ EAE E+ G V
Sbjct: 181 STYEIVQKQIEQNLW----YIWVQPIAFVVYMFAALAEMGRVPF-DVQEAEAELVTGFTV 235
Query: 221 EYSGRYLGIIKLAE 234
EY G G+ L E
Sbjct: 236 EYGGMKFGLFPLVE 249
>pir||T12407 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - Sarcophyton
glaucum mitochondrion (fragment)
>gi|4091920|gb|AAC99654.1| (AF064823) NADH dehydrogenase
subunit 1 [Sarcophyton glaucum]
Length = 263
Score = 85.4 bits (208), Expect = 8e-16
Identities = 73/259 (28%), Positives = 124/259 (47%), Gaps = 29/259 (11%)
Query: 2 KVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMS 55
K + +I L++ AY+++ +RK++ MQ R GP + LQP D LKL +
Sbjct: 14 KTLAIIIPLLVAIAYLTLA-------ERKVLGYMQARKGPNVVGVYGLLQPLADGLKLFT 66
Query: 56 KETIIPNTANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLAD--- 111
KE IPN AN ++ AP+L LT +A LA+ + FSP + +Y+ ++
Sbjct: 67 KEMAIPNHANLSVYIVAPILSLT--LAFLAWGVIPFSPGIVLADINVGVLYIFAISSMGV 124
Query: 112 FFLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYE 171
+ +++ S S Y +GA R A +IS E + L + +V+ + L + + L +
Sbjct: 125 YAILMSGWGSNSKYAFLGAIRAAAQMISYEVCIGLILISVILCVGSLNITQIV----LAQ 180
Query: 172 HNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
+W + P+ A +F + +E F++ E E E+ G VEYS +
Sbjct: 181 AEIWYIIPLFPAA-----LMFFASALAETNRAPFDLTEGESELVSGYNVEYSSMSFALFF 235
Query: 232 LAESIKEFIAASLVVAVLF 250
LAE I S ++++LF
Sbjct: 236 LAE-YGHIILMSCLISLLF 253
>emb|CAA69811.2| (Y08502) NADH dehydrogenase subunit 1 [Arabidopsis thaliana]
Length = 325
Score = 85.4 bits (208), Expect = 8e-16
Identities = 81/311 (26%), Positives = 145/311 (46%), Gaps = 35/311 (11%)
Query: 28 DRKLVARMQRRIGPPI------LQPFYDFLKLMSKETIIPNTAN-FMFRAAPVLMLTTVI 80
+RK++A +QRR GP + LQP D LKL+ KE I P++AN F+FR APV +
Sbjct: 27 ERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLILKEPISPSSANFFLFRMAPVATFMLSL 86
Query: 81 ALLAYTPMGFSPLFATKGDIIVFIYLL-TLADFFLILGVMSSGSPYGRIGAAREVAMLIS 139
A P + + + +++++ + +L + +I+ SS S Y +GA R A ++S
Sbjct: 87 VAWAVVPFDYGMVLSDLNIGLLYLFAISSLGVYGIIIAGWSSNSKYAFLGALRSAAQMVS 146
Query: 140 REPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELGPMVWVAGVILIYVFMSWLASE 199
E ++ L + V+ + + + + + +W P+ +L+ F+S LA E
Sbjct: 147 YEVSIGLILITVLICVGSCNLSEIV----MAQKQIWFGIPLF----PVLVMFFISCLA-E 197
Query: 200 IEVGFFNIPEAEEEIAEGTLVEYS---------GRYLGIIKLAESIKEFIAASLVVAVLF 250
F++PEAE E+ G VEYS G Y +I ++ F + +
Sbjct: 198 TNRAPFDLPEAEAELVAGYNVEYSSMGSALFFLGEYANMILMSGLCTLFFLGGWLPILDL 257
Query: 251 PWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQAVNLLWTRVFAASIV 310
P IPG+ + + +L +F+ + V R R + Q + L W +VF +
Sbjct: 258 PIFKKIPGLIWFSIKVLFF---LFLYIWV-----RAAFPRYRYDQLMGLGW-KVFLPLSL 308
Query: 311 GALLLALGVMI 321
++ G+++
Sbjct: 309 AWVVSVSGLLV 319
>gb|AAF66630.1| (AF143000) NADH dehydrogenase subunit 1 [Mormoops blainvillii]
Length = 306
Score = 85.4 bits (208), Expect = 8e-16
Identities = 81/305 (26%), Positives = 140/305 (45%), Gaps = 27/305 (8%)
Query: 7 LIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETII 60
+I L+L+ + + + I+RK++ MQ R GP + LQP D +KL KE +
Sbjct: 3 IINLLLMIVPILLAVAFLTLIERKILGYMQLRKGPNVVGPYGLLQPIADAVKLFVKEPLR 62
Query: 61 PNTANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVM 119
P T++ MF AP+L LT + + PM PL ++ + + +LA + ++
Sbjct: 63 PLTSSITMFIIAPILALTLALTMWVPLPMPH-PLINMNLSVLFMLAMSSLAVYAILWXGW 121
Query: 120 SSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELGP 179
+S S Y IGA R VA IS E + + ++ I + S + + +W
Sbjct: 122 ASNSKYALIGALRAVAQTISYEVTLAI----ILLSILLMSGSYTLSTLIITQEYMW---- 173
Query: 180 MVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEF 239
+++ A + + F+S LA E F++ E E E+ G VEY+G + LAE
Sbjct: 174 LIFPAWPLAMMWFISTLA-ETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAE-YANI 231
Query: 240 IAASLVVAVLFPWQVG---IPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQA 296
I + + +LF +P + Y N +I T+ + + L + + R + Q
Sbjct: 232 IMMNALTTILFMGAYNNSLLPEL--YTTNFMIKTSLLTMSFLWVRASY----PRFRYDQL 285
Query: 297 VNLLW 301
++LLW
Sbjct: 286 MHLLW 290
>sp|P57258|NUOH_BUCAI NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
H) >gi|10038843|dbj|BAB12878.1| (AP001118) NADH
dehydrogenase I chain H [Buchnera sp. APS]
Length = 322
Score = 85.4 bits (208), Expect = 8e-16
Identities = 77/337 (22%), Positives = 153/337 (44%), Gaps = 39/337 (11%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLM 54
+K+ + +I + + S + S ++R+L+A Q R GP LQ D +K++
Sbjct: 9 IKITFCFFKVIFILLLIVFSSAMLSIVERRLLAVFQNRYGPNRVGWMGSLQLCADMIKIL 68
Query: 55 SKETIIPN-TANFMFRAAPVLMLTTVIALLAYTPM-GFSPLFATKGDIIVFIYLLTLADF 112
KE IP + F+F +PV+ T+++ ++ P + I+ F+ + +L+ +
Sbjct: 69 FKEDWIPPFSRKFIFVLSPVIAFTSLLCVIPIIPFTSHFVIIDLNIGILFFLMMASLSVY 128
Query: 113 FLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEH 172
++ SS + Y +GA R +S E + L + V +++ G K + + ++
Sbjct: 129 AILFAGWSSNNKYALLGAMRACVQTLSYEVFLGLSLMGV---VAQSGSFKISDIVNSQKY 185
Query: 173 NLWELGPMVWVAGVILIYVFMSWLASEIEVGF---FNIPEAEEEIAEGTLVEYSGRYLGI 229
+W + P + F+++L + + V F+ PE+E+E+A+G +EYSG G+
Sbjct: 186 -IWNVFPQ--------FFGFLTFLIAGLAVCHRHPFDQPESEQELADGYHIEYSGMKFGL 236
Query: 230 IKLAESIKEFIAASLVVAVLF-----PWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIF 284
+ E I +SL+V + F PW IP +I+ ++ FI L + +
Sbjct: 237 FFIGEYISIITVSSLIVTLFFGGWLGPW---IPSCIWFILKIIF-----FIFLFI---LI 285
Query: 285 RTVTGRLKITQAVNLLWTRVFAASIVGALLLALGVMI 321
R R + Q + W ++ L A +++
Sbjct: 286 RAALPRPRYDQVLLFGWKFCLPLTLFNLFLTAFLILV 322
>sp|P95174|NUOH_MYCTU NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
H) >gi|7431958|pir||A70648 probable NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain H - Mycobacterium
tuberculosis (strain H37RV) >gi|1781216|emb|CAB06287.1|
(Z83867) nuoH [Mycobacterium tuberculosis]
Length = 410
Score = 85.0 bits (207), Expect = 1e-15
Identities = 85/332 (25%), Positives = 141/332 (41%), Gaps = 37/332 (11%)
Query: 11 ILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLMSKETIIPNTA 64
I ++ ++ + L+ +RKL+ RMQ R GP LQ D +KL KE+I P
Sbjct: 17 IAVFVFLMLTVLVAILAERKLLGRMQLRPGPNRVGPKGALQSLADGIKLALKESITPGGI 76
Query: 65 N-FMFRAAPVLMLTTVIALLAYTPMG--------FSPLFATKGDIIVFIYL--LTLADFF 113
+ F++ AP++ + A+ P G +PL T + V L + +
Sbjct: 77 DRFVYFVAPIISVIPAFTAFAFIPFGPEVSVFGHRTPLQITDLPVAVLFILGLSAIGVYG 136
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
++LG +SGS Y +G R A +IS E AM L V G++
Sbjct: 137 IVLGGWASGSTYPLLGGVRSTAQVISYEVAMGLSFATVF-----------LMAGTMSTSQ 185
Query: 174 LWELGPMVWVAGVIL--IYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
+ VW A ++L +++ + E F++PEAE E+ G EYS +
Sbjct: 186 IVAAQDGVWYAFLLLPSFVIYLISMVGETNRAPFDLPEAEGELVAGFHTEYSSLKFAMFM 245
Query: 232 LAESIKEFIAASLVVAVLF-----PWQVGI-PGIQGYIVNLLIHTAKVFIVLLVAKTIFR 285
LAE + ++L + F PW + + L+ TAKV+ L + + R
Sbjct: 246 LAEYVNMTTVSALAATLFFGGWHAPWPLNMWASANTGWWPLIWFTAKVWGFLFIYFWL-R 304
Query: 286 TVTGRLKITQAVNLLWTRVFAASIVGALLLAL 317
RL+ Q + L W + S+V ++ A+
Sbjct: 305 ATLPRLRYDQFMALGWKLLIPVSLVWVMVAAI 336
>gb|AAB97889.1| (AF036376) NADH dehydrogenase subunit 1 [Thymallus arcticus]
Length = 324
Score = 85.0 bits (207), Expect = 1e-15
Identities = 83/303 (27%), Positives = 148/303 (48%), Gaps = 30/303 (9%)
Query: 7 LIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETII 60
++ ++L A+++++ +RK++ MQ R GP I LQP D LKL KE +
Sbjct: 16 IVPVLLAVAFLTLL-------ERKVLGYMQLRKGPNIVGPYGLLQPIADGLKLFIKEPVR 68
Query: 61 PNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVM 119
P+T++ F+F A P+L LT + L A P+ + P+ ++ + L +LA + ++
Sbjct: 69 PSTSSPFLFLATPMLALTLALTLWAPMPIPY-PVTDLNLGVLFVLALSSLAVYSILGSGW 127
Query: 120 SSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELGP 179
+S S Y IGA R VA IS E ++ L + +V+ +Q ++ + ++W + P
Sbjct: 128 ASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTLQ----TFNIAQESIWLVVP 183
Query: 180 MVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEF 239
W + ++S LA E F+ E E E+ G VEY+G + LAE
Sbjct: 184 -AWPLAALW---YISTLA-ETNRAPFDFTEGECELVSGFNVEYAGGPFALFFLAE-YANI 237
Query: 240 IAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQAVN 298
+ + + A+LF IP + + +NL+ A + +V L + + R + Q ++
Sbjct: 238 LLMNTLSAILFLGATHIPALPELTAMNLMTKAALLSVVFLWVRASY----PRFRYDQLMH 293
Query: 299 LLW 301
L+W
Sbjct: 294 LVW 296
>gi|5835667 NADH dehydrogenase subunit 1 [Artibeus jamaicensis]
>gi|7431948|pir||T11140 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - fruit bat (Artibeus jamaicensis)
mitochondrion >gi|4164475|gb|AAD05438.1| (AF061340) NADH
dehydrogenase subunit 1 [Artibeus jamaicensis]
Length = 318
Score = 85.0 bits (207), Expect = 1e-15
Identities = 84/311 (27%), Positives = 145/311 (46%), Gaps = 34/311 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
M ++ ++ ++L A+++++ +RK++ MQ R GP + LQP D +KL
Sbjct: 4 MNLLTTIVPVLLAVAFLTLV-------ERKILGYMQLRKGPNVVGPYGLLQPIADAVKLF 56
Query: 55 SKETIIPNTANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
KE + P T++ MF AP+L LT + + A PM PL I+ + + +LA +
Sbjct: 57 IKEPLRPLTSSITMFIIAPILALTLALTMWAPLPMP-HPLINMNLSILFMLAMSSLAVYS 115
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--E 171
++ +S S Y IGA R VA IS E + + + +V L + +SL +L +
Sbjct: 116 ILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSV------LLMSGSYSLSTLITTQ 169
Query: 172 HNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
+W +++ + + + F+S LA E F++ E E E+ G VEY+G +
Sbjct: 170 EYMW----LIYPSWPLTMMWFISTLA-ETNRAPFDLTEGESELVSGFNVEYAGGPFALFF 224
Query: 232 LAESIKEFIAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
LAE I + + LF P + Y +N I T ++L R R
Sbjct: 225 LAE-YANIIMMNALTTTLFLGAYHNPIFPELYTINFAIKT----LLLTTTFLWIRASYPR 279
Query: 291 LKITQAVNLLW 301
+ Q +++LW
Sbjct: 280 FRYDQLMHILW 290
>gi|5835892 NADH dehydrogenase subunit 1 [Salvelinus fontinalis]
>gi|5257511|gb|AAD41373.1|AF154850_2 (AF154850) NADH
dehydrogenase subunit 1 [Salvelinus fontinalis]
Length = 324
Score = 85.0 bits (207), Expect = 1e-15
Identities = 87/307 (28%), Positives = 148/307 (47%), Gaps = 27/307 (8%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSK 56
VI L ++ + V+ ++LL +RK++ MQ R GP I LQP D LKL K
Sbjct: 9 VINPLAYIVPILLAVAFLTLL----ERKVLGYMQLRKGPNIVGPYGLLQPIADGLKLFIK 64
Query: 57 ETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLI 115
E + P+T++ F+F A P+L LT + L A P+ + P+ ++ + L +LA + ++
Sbjct: 65 EPVRPSTSSPFLFLATPMLALTLALTLWAPMPIPY-PVTDLNLGVLFVLALSSLAVYSIL 123
Query: 116 LGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLW 175
+S S Y IGA R VA IS E ++ L + +V+ +Q ++ + ++W
Sbjct: 124 GSGWASNSKYALIGALRAVAQTISYEVSLGLILLSVIIFTGGFTLQ----TFNVAQESIW 179
Query: 176 ELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAES 235
L P A + ++S LA E F++ E E E+ G VEY+G + LAE
Sbjct: 180 LLVP----AWPLAAMWYISTLA-ETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAE- 233
Query: 236 IKEFIAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKIT 294
+ + + +LF IP + +NL+ A + +V L + + R +
Sbjct: 234 YANILLMNTLSTILFLGASHIPTFPELTAMNLMTKAALLSVVFLWVRASY----PRFRYD 289
Query: 295 QAVNLLW 301
Q ++L+W
Sbjct: 290 QLMHLVW 296
>gi|5835127 NADH dehydrogenase subunit 1 [Pan troglodytes]
>gi|6045095|dbj|BAA85268.1| (D38113) NADH dehydrogenase
subunit 1 [Pan troglodytes]
Length = 318
Score = 85.0 bits (207), Expect = 1e-15
Identities = 86/313 (27%), Positives = 142/313 (44%), Gaps = 43/313 (13%)
Query: 7 LIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETII 60
+ L+LL + I +RK++ MQ R GP I LQPF D +KL +KE +
Sbjct: 3 MTNLLLLIVPILIAMAFLMLTERKILGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLK 62
Query: 61 PNTANF-MFRAAPVLMLTTVIALLAYTPMGF-SPLFATKGDIIVFIYLLTLADFFLILGV 118
P+T+ ++ AP L LT IALL +TP+ +PL ++ + +LA + ++
Sbjct: 63 PSTSTITLYITAPTLALT--IALLLWTPLPMPNPLVNLNLGLLFILATSSLAVYSILWSG 120
Query: 119 MSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--EHNLWE 176
+S S Y IGA R VA IS E + + + +S L + F+L +L + +LW
Sbjct: 121 WASNSNYALIGALRAVAQTISYEVTLAIIL------LSTLLMSGSFNLSTLVTTQEHLWL 174
Query: 177 LGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESI 236
+ P W ++ F+S LA E F++ E E E+ G +EY+ + +AE +
Sbjct: 175 ILP-TWPLAMMW---FISTLA-ETNRTPFDLTEGESELVSGFNIEYAAGPFALFFMAEYM 229
Query: 237 KEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTI--------FRTVT 288
+ +L + G N H+ +++ V K + RT
Sbjct: 230 NIIMMNTLTATIFL----------GATYN--THSPELYTTYFVTKALLLTSLFLWIRTAY 277
Query: 289 GRLKITQAVNLLW 301
R + Q ++LLW
Sbjct: 278 PRFRYDQLMHLLW 290
>gi|5835140 NADH dehydrogenase subunit 1 [Pan paniscus]
>gi|6045121|dbj|BAA85294.1| (D38116) NADH dehydrogenase
subunit 1 [Pan paniscus]
Length = 318
Score = 85.0 bits (207), Expect = 1e-15
Identities = 88/313 (28%), Positives = 142/313 (45%), Gaps = 43/313 (13%)
Query: 7 LIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETII 60
+ L+LL V I +RK++ MQ R GP I LQPF D +KL +KE +
Sbjct: 3 MTNLLLLIVPVLIAMAFLMLTERKILGYMQLRKGPNIVGPYGLLQPFADAMKLFTKEPLK 62
Query: 61 PNTANF-MFRAAPVLMLTTVIALLAYTPMGF-SPLFATKGDIIVFIYLLTLADFFLILGV 118
P+T+ ++ AP L LT IALL +TP+ +PL ++ + +LA + ++
Sbjct: 63 PSTSTITLYITAPTLALT--IALLLWTPLPMPNPLVNLNLGLLFILATSSLAVYSILWSG 120
Query: 119 MSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--EHNLWE 176
+S S Y IGA R VA IS E + + + +S L + F+L +L + +LW
Sbjct: 121 WASNSNYALIGALRAVAQTISYEVTLAIIL------LSTLLMSGSFNLSTLITTQEHLWL 174
Query: 177 LGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESI 236
+ P W ++ F+S LA E F++ E E E+ G +EY+ + +AE +
Sbjct: 175 ILP-TWPLAMMW---FISTLA-ETNRTPFDLTEGESELVSGFNIEYAAGPFALFFMAEYM 229
Query: 237 KEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTI--------FRTVT 288
+ +L + G N H+ +++ V K + RT
Sbjct: 230 NIIMMNTLTATIFL----------GTTYN--THSPELYTTYFVTKALLLTSLFLWIRTTY 277
Query: 289 GRLKITQAVNLLW 301
RL Q ++LLW
Sbjct: 278 PRLCYDQLMHLLW 290
>gi|9695360 NADH dehydrogenase subunit 1 [Paralichthys olivaceus]
>gi|6683094|dbj|BAA89033.1| (AB028664) NADH
dehydrogenase subunit-1 [Paralichthys olivaceus]
Length = 324
Score = 85.0 bits (207), Expect = 1e-15
Identities = 89/308 (28%), Positives = 143/308 (45%), Gaps = 25/308 (8%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSK 56
+I +I + L V + + ++RK++ MQ R GP I LQP D +KL K
Sbjct: 5 LITHIINPLALIVPVLLAVAFLTLLERKVLGYMQLRKGPNIVGPYGLLQPIADGIKLFIK 64
Query: 57 ETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLI 115
E + P+TA+ +F AP+L LT + L A P+ +S + G I+F+ L+ + I
Sbjct: 65 EPVRPSTASPVLFLLAPMLALTLALTLWAPMPLPYSTVDLNLG--ILFVLALSSLAVYSI 122
Query: 116 LGV-MSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNL 174
LG +S S Y +GA R VA IS E ++ L ++ I L + + +
Sbjct: 123 LGSGWASNSKYALVGALRAVAQTISYEVSLGL----ILLNIIILTGGFTLQTFNTAQEAV 178
Query: 175 WELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAE 234
W +V A + ++S LA E F++ E E E+ G VEY+G + LAE
Sbjct: 179 W----LVLPAWPLAAMWYISTLA-ETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAE 233
Query: 235 SIKEFIAASLVVAVLFPWQVGIPGIQGY-IVNLLIHTAKVFIVLLVAKTIFRTVTGRLKI 293
+ + + AVLF IP I +NL+ A + +V L + + R +
Sbjct: 234 -YSNILLMNTLSAVLFLGASHIPTIATLTAINLMTKAALLSVVFLWVRASY----PRFRY 288
Query: 294 TQAVNLLW 301
Q ++L+W
Sbjct: 289 DQLMHLIW 296
>gi|5835276 NADH dehydrogenase subunit 1 [Crossostoma lacustre]
>gi|462755|sp|P34186|NU1M_CROLA NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|486792|pir||S35462 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
hillstream loach (Crossostoma lacustre) mitochondrion
>gi|2146911|pir||S60271 hypothetical protein 1 -
hillstream loach (Crossostoma lacustre) mitochondrion
(SGC1) >gi|336704|gb|AAB96811.1| (M91245) NADH
dehydrogenase subunit 1 [Crossostoma lacustre]
Length = 324
Score = 85.0 bits (207), Expect = 1e-15
Identities = 86/305 (28%), Positives = 146/305 (47%), Gaps = 34/305 (11%)
Query: 7 LIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETII 60
++ ++L A+++++ +RK++ MQ R GP I LQP D +KL KE I
Sbjct: 16 IVPVLLAVAFLTLL-------ERKVLGYMQLRKGPNIVGPYGLLQPIADGVKLFIKEPIR 68
Query: 61 PNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVM 119
P+TA+ +F P+L LT + L A PM P+ ++ + L +LA + ++
Sbjct: 69 PSTASPTLFLVTPMLALTLAMTLWAPMPMPH-PIIDLNLGVLFILALSSLAVYSILGSGW 127
Query: 120 SSGSPYGRIGAAREVAMLISREPAM--MLGVFAVMWGISKLGVQKPFSLGSLYEHNLWEL 177
+S S Y IGA R VA IS E ++ +L + WG + + + LW L
Sbjct: 128 ASNSKYALIGALRAVAQTISYEVSLGLILRSIIIFWGGYTV------QTFNTTQEALWLL 181
Query: 178 GPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIK 237
P +A + ++S LA E F++ E E E+A G VEY+G ++ LAE
Sbjct: 182 LPACPLAAMW----YISTLA-ETNRAPFDLTEGESELAPGFNVEYAGGPFALLFLAE-YA 235
Query: 238 EFIAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQA 296
+ + + A+LF +P I + +NL+ A + +V L + + R + Q
Sbjct: 236 NILLMNTLSAILFLGASHMPAIPELTTINLMTKAALLSVVFLWVRASY----PRFRYDQL 291
Query: 297 VNLLW 301
++L+W
Sbjct: 292 MHLVW 296
>gb|AAF66632.1| (AF143002) NADH dehydrogenase subunit 1 [Hipposideros diadema]
Length = 318
Score = 85.0 bits (207), Expect = 1e-15
Identities = 83/310 (26%), Positives = 145/310 (46%), Gaps = 37/310 (11%)
Query: 7 LIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETII 60
+I L+L+ + + + ++RK++ MQ R GP + LQP D +KL +KE +
Sbjct: 3 MINLLLMIVPILLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADAIKLFTKEPLR 62
Query: 61 PNTANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVM 119
P T++ MF AP+L L + + PM + PL ++ + + +LA + ++
Sbjct: 63 PLTSSISMFIIAPILALALALTMWTPLPMPY-PLINMNLGVLFMLAMSSLAVYSILWSGW 121
Query: 120 SSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--EHNLWEL 177
+S S Y IGA R VA IS E + + + +V L + F+L +L + ++W +
Sbjct: 122 ASNSKYALIGALRAVAQTISYEVTLAIILLSV------LLLNGSFTLPTLITTQEHMWLI 175
Query: 178 GP-----MVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKL 232
P M+W F+S LA E F++ E E E+ G VEY+G + L
Sbjct: 176 IPSWPLAMMW---------FISTLA-ETNRAPFDLTEGESELVSGFNVEYAGGPFALFFL 225
Query: 233 AESIKEFIAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRL 291
AE I ++ +LF P + + Y +N + + ++L ++ R R
Sbjct: 226 AE-YANIIMMNIFTTILFLGAFHNPLMPELYTINFVTKS----MLLTISFLWVRASYPRF 280
Query: 292 KITQAVNLLW 301
+ Q ++LLW
Sbjct: 281 RYDQLMHLLW 290
>gi|5834968 NADH dehydrogenase subunit 1 [Paracentrotus lividus]
>gi|128647|sp|P12772|NU1M_PARLI NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431898|pir||A34284 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - sea
urchin (Paracentrotus lividus) mitochondrion
>gi|854686|gb|AAA68133.1| (J04815) NADH dehydrogenase
subunit 1 [Paracentrotus lividus]
>gi|7322052|gb|AAA65506.2| (M37162) NADH dehydrogenase
[Paracentrotus lividus]
Length = 323
Score = 84.7 bits (206), Expect = 1e-15
Identities = 88/333 (26%), Positives = 155/333 (46%), Gaps = 31/333 (9%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
M ++ ++ L+ V + + ++RK++ MQ R GP I LQPF D LKL
Sbjct: 1 MTYLFTVLELLSFLVPVLLAVAFLTLVERKVLGYMQFRKGPNIVGPYGLLQPFADGLKLF 60
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
KET+ P+TA+ ++F +P+L + + L P+ +P + +++ + L +L+ +
Sbjct: 61 IKETLKPSTASPYLFFLSPLLFMALALLLWNLMPV-HTPTLNFQLSLLLVLGLSSLSVYA 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
++ ++ S Y IGA R VA IS E ++ L + +S + + F+L Y N
Sbjct: 120 ILGSGWAANSKYSLIGAIRAVAQTISYEISLALIL------LSLIIITSSFNL--TYIMN 171
Query: 174 LWELGPMVWVA--GVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
E W A + L Y++ +E F++ E E EI G VEY+G +
Sbjct: 172 AQEFS---WFALSCLPLFYIWFVSTLAETNRAPFDLTEGESEIVSGYNVEYAGGPFALFF 228
Query: 232 LAESIKEFIAASLVVAVLF---PWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVT 288
+AE I +L V+F PW P + + +N+L K +++ + + R
Sbjct: 229 IAE-YANIILMNLFSVVIFLGGPW----PANELFPLNVLTIGLKTTLLVFLFLWV-RAAY 282
Query: 289 GRLKITQAVNLLWTRVFAASIVGALLLALGVMI 321
R + Q + L W SI GAL + +++
Sbjct: 283 PRFRYDQLMFLTWKSYLPLSI-GALCATITIVL 314
>emb|CAA75485.1| (Y15186) NADH dehydrogenase subunit 1 [Myxine glutinosa]
Length = 317
Score = 84.7 bits (206), Expect = 1e-15
Identities = 87/307 (28%), Positives = 144/307 (46%), Gaps = 27/307 (8%)
Query: 2 KVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMS 55
++I +L+ +++ V+ ++L I+RK++ MQ R GP I LQPF D +KL
Sbjct: 3 QIISSLLTFVMILIAVAFLTL----IERKVLGYMQLRKGPNIVGPFGLLQPFADGIKLFI 58
Query: 56 KETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFL 114
KE + P+ A+ F+F AP L ++ + L P+ + G ++ + + +L+ + L
Sbjct: 59 KEPLQPSYASIFLFILAPALAISLALILWISLPLPLALSDMNLG-LMFILAISSLSVYSL 117
Query: 115 ILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNL 174
+ +S S Y +GA R VA IS E + LG+ V I G + ++ +
Sbjct: 118 LTSGWASNSKYALMGALRAVAQTISYE--VTLGLMIVALTILSGGFDLKLFID--LQNKI 173
Query: 175 WELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAE 234
W L PM W I + F+S LA E F++ E E E+ G VE+SG + LAE
Sbjct: 174 WLLFPM-W---PIFLMWFISTLA-ETNRSPFDLTEGESELVSGFNVEFSGGLFALFFLAE 228
Query: 235 SIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKIT 294
SL V VLF +G + + + +F++ L R R +
Sbjct: 229 YANILFMNSLTV-VLF---MGSSNLSSLYFSASMTMKTMFLIFLFLWV--RASYPRFRYD 282
Query: 295 QAVNLLW 301
Q ++L+W
Sbjct: 283 QLMHLMW 289
>sp|O78703|NU1M_MONDO NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3399745|dbj|BAA32112.1|
(AB011220) NADH dehydrogenase subunit 1 [Monodelphis
domestica]
Length = 318
Score = 84.7 bits (206), Expect = 1e-15
Identities = 87/310 (28%), Positives = 145/310 (46%), Gaps = 29/310 (9%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLM 54
M +I LI +I + V+ ++L I+RK++ MQ R GP ILQPF D +KL
Sbjct: 1 MFLINLLIYIIPILLAVAFLTL----IERKVLGYMQLRKGPNVIGPYGILQPFADAVKLF 56
Query: 55 SKETIIPNTANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE + P T++ MF AP+L LT + + PM + + G ++ + L L+ +
Sbjct: 57 TKEPLRPLTSSISMFIIAPILALTLALTIWTPLPMPHTLIDLNLG-LLFILSLSGLSVYS 115
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--E 171
++ +S S Y IGA R VA IS E + + + ++M + F+L +L +
Sbjct: 116 ILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIML------INGSFTLKNLMITQ 169
Query: 172 HNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
N+W ++ A + + ++S LA E F++ E E E+ G VEY+ +
Sbjct: 170 ENMW----LIMTAWPLTMMWYISTLA-ETNRAPFDLTEGESELVSGFNVEYAAGPFAMFF 224
Query: 232 LAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRL 291
LAE +A + + +LF +G P + I ++L A R R
Sbjct: 225 LAE-YANIMAMNAMTTILF---LGPPLNHNHTYTCTISFMFKTMLLTSAFLWVRASYPRF 280
Query: 292 KITQAVNLLW 301
+ Q + LLW
Sbjct: 281 RYDQLMYLLW 290
>gi|5835765 NADH dehydrogenase subunit 1 [Orycteropus afer]
>gi|7431953|pir||T11337 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - aardvark mitochondrion
>gi|4691354|emb|CAB41621.1| (Y18475) NADH dehydrogenase
subunit 1 [Orycteropus afer]
Length = 317
Score = 84.7 bits (206), Expect = 1e-15
Identities = 84/331 (25%), Positives = 152/331 (45%), Gaps = 33/331 (9%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
+ ++ +I ++L A+++++ +RK + MQ R GP I LQP D KL
Sbjct: 4 INLLSLIIPILLAVAFLTLV-------ERKTLGYMQLRKGPNIVGPYGLLQPIADAAKLF 56
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
KE + P T++ MF AP+L LT + + PM + PL I+ + + +LA +
Sbjct: 57 IKEPLRPATSSTLMFTIAPILALTLALTMWIPLPMPY-PLINMNLGILFILAISSLAVYS 115
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSL--YE 171
++ +S S Y IGA R VA IS E ++ + + +VM + F+L SL +
Sbjct: 116 ILWSGWASNSKYALIGALRAVAQTISYEVSLAIILLSVML------INGSFTLASLTITQ 169
Query: 172 HNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
++W + P W ++ F+S LA E F++ E E E+ G VEY+ +
Sbjct: 170 EHIWLIIP-TWPLAMMW---FISTLA-ETNRAPFDLTEGESELVSGFNVEYAAGPFALFF 224
Query: 232 LAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRL 291
LAE + +L + + + N ++ T ++L + R R
Sbjct: 225 LAEYANIIMMNALTTLLFLGSFHNHAHPELFTTNFILKT----MILTICFLWIRASYPRF 280
Query: 292 KITQAVNLLWTRVFAASIVGALL-LALGVMI 321
+ Q ++LLW ++ +L +++ +M+
Sbjct: 281 RYDQLMHLLWKNFLPLTLALCMLYISIPIML 311
>gb|AAF66625.1| (AF142995) NADH dehydrogenase subunit 1 [Artibeus lituratus]
Length = 305
Score = 84.7 bits (206), Expect = 1e-15
Identities = 82/313 (26%), Positives = 145/313 (46%), Gaps = 38/313 (12%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
M ++ ++ ++L A+++++ +RK++ MQ R GP + LQP D +KL
Sbjct: 4 MNLLTTIVPVLLAVAFLTLV-------ERKILGYMQLRKGPNVVGPYGLLQPIADAVKLF 56
Query: 55 SKETIIPNTANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE + P T++ MF AP+L LT + + PM PL I+ + + +LA +
Sbjct: 57 TKEPLRPLTSSITMFIIAPILALTLALTMWVPLPMP-HPLINMNLSILFMLAMSSLAVYS 115
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--E 171
++ +S S Y IGA R VA IS E + + + +V L + +SL +L +
Sbjct: 116 ILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSV------LLMSGSYSLSTLITTQ 169
Query: 172 HNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
+W +++ + + + F+S LA E F++ E E E+ G VEY+G +
Sbjct: 170 EYMW----LIYPSWPLTMMWFISTLA-ETNRAPFDLTEGESELVSGFNVEYAGGPFALFF 224
Query: 232 LAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIF---RTVT 288
LAE + +L + G ++ ++T + I L T F R
Sbjct: 225 LAEYANIIMMNALTTTLFL-------GAYHNPISPELYTTQFAIKTLXLTTTFLWIRASY 277
Query: 289 GRLKITQAVNLLW 301
R + Q ++LLW
Sbjct: 278 PRFRYDQLMHLLW 290
>gi|8572569 NADH dehydrogenase subunit 1 [Bombyx mori]
>gi|8163618|gb|AAF73763.1|AF149768_7 (AF149768) NADH
dehydrogenase 1 [Bombyx mori]
Length = 310
Score = 84.7 bits (206), Expect = 1e-15
Identities = 87/327 (26%), Positives = 148/327 (44%), Gaps = 35/327 (10%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLMSK 56
++ LIG+I+L V I + ++RK++ +Q R GP +LQPF D +KL +K
Sbjct: 4 LLMILIGMIILILGVLIGVAFLTLLERKVLGYIQIRKGPNKVGFMGLLQPFSDAIKLFTK 63
Query: 57 ETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLI 115
E+ PN +N F + +PV + L + P F+ + G I+ F+ L +L + ++
Sbjct: 64 ESTYPNFSNYFCYYFSPVFSFILSLLLWSLIPYMFNLICFNLG-ILFFLCLTSLGVYMVM 122
Query: 116 LGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLW 175
+ SS S Y +G R VA IS E +M L + + I + + LY+ +W
Sbjct: 123 IAGWSSNSNYALLGGLRSVAQTISYEVSMALIFMSSILLIMCFDIYFFY----LYQEMVW 178
Query: 176 ELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAES 235
+ M + L F S L +E F+ E E E+ G +EYS +I LAE
Sbjct: 179 FMFIM-----IPLFLCFFSSLLAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFLAE- 232
Query: 236 IKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTG---RLK 292
+ S+++ ++ + GY ++ ++ L + +F V G R +
Sbjct: 233 YSSILFMSMILVIM--------NMGGYNLSFFF-----YLKLSLISFLFIWVRGTLPRYR 279
Query: 293 ITQAVNLLWTRVFAASIVGALLLALGV 319
+ + L W S+ LLL LG+
Sbjct: 280 YDKLMYLAWKSYLPISL-NYLLLFLGL 305
>gi|5835206 NADH dehydrogenase subunit 1 [Felis catus]
>gi|1352539|sp|P48900|NU1M_FELCA NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431956|pir||T11402 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - cat
mitochondrion >gi|1098524|gb|AAC48569.1| (U20753) NADH
dehydrogenase subunit 1 [Felis catus]
>gi|1589115|prf||2210305A NADH dehydrogenase:SUBUNIT=1
[Felis catus]
Length = 318
Score = 84.7 bits (206), Expect = 1e-15
Identities = 84/311 (27%), Positives = 146/311 (46%), Gaps = 34/311 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
+ V+ +I ++L A+++++ +RK++ MQ R GP + LQP D +KL
Sbjct: 4 INVLSLIIPILLAVAFLTLV-------ERKVLGYMQLRKGPNVVGPYGLLQPIADAVKLF 56
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE + P T++ MF AP+L LT + + PM + PL ++ + + +LA +
Sbjct: 57 TKEPLRPLTSSMLMFIMAPILALTLALTMWIPLPMPY-PLINMNLGVLFMLAMSSLAVYS 115
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--E 171
++ +S S Y IGA R VA IS E + + + +V L + F+L L +
Sbjct: 116 ILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSV------LLMNGSFTLAMLITTQ 169
Query: 172 HNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
+W + P A + + F+S LA E F++ E E E+ G VEY+ +
Sbjct: 170 EYMWLIIP----AWPLAMMWFISTLA-ETNRAPFDLTEGESELVSGFDVEYAAGPFALFF 224
Query: 232 LAESIKEFIAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
LAE I +++ +LF P + + Y +N + T ++L R R
Sbjct: 225 LAE-YANIIMMNILTTILFFGAFHSPYMPELYTINFTVKT----LLLTTTFLWIRASYPR 279
Query: 291 LKITQAVNLLW 301
+ Q ++LLW
Sbjct: 280 FRYDQLMHLLW 290
>gb|AAG33816.1| (AF295564) NADH dehydrogenase subunit 1 [Bombyx mori]
Length = 314
Score = 84.7 bits (206), Expect = 1e-15
Identities = 87/327 (26%), Positives = 148/327 (44%), Gaps = 35/327 (10%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLMSK 56
++ LIG+I+L V I + ++RK++ +Q R GP +LQPF D +KL +K
Sbjct: 8 LLMILIGMIILILGVLIGVAFLTLLERKVLGYIQIRKGPNKVGFMGLLQPFSDAIKLFTK 67
Query: 57 ETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLI 115
E+ PN +N F + +PV + L + P F+ + G I+ F+ L +L + ++
Sbjct: 68 ESTYPNFSNYFCYYFSPVFSFILSLLLWSLIPYMFNLICFNLG-ILFFLCLTSLGVYMVM 126
Query: 116 LGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLW 175
+ SS S Y +G R VA IS E +M L + + I + + LY+ +W
Sbjct: 127 IAGWSSNSNYALLGGLRSVAQTISYEVSMALIFMSSILLIMCFDIYFFY----LYQEMVW 182
Query: 176 ELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAES 235
+ M + L F S L +E F+ E E E+ G +EYS +I LAE
Sbjct: 183 FMFIM-----IPLFLCFFSSLLAETNRTPFDFAEGESELVSGFNIEYSSGGFALIFLAE- 236
Query: 236 IKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTG---RLK 292
+ S+++ ++ + GY ++ ++ L + +F V G R +
Sbjct: 237 YSSILFMSMILVIM--------NMGGYNLSFFF-----YLKLSLISFLFIWVRGTLPRYR 283
Query: 293 ITQAVNLLWTRVFAASIVGALLLALGV 319
+ + L W S+ LLL LG+
Sbjct: 284 YDKLMYLAWKSYLPISL-NYLLLFLGL 309
>gi|11602892 NADH dehydrogenase subunit 1 [Pteropus scapulatus]
>gi|11545676|gb|AAG37913.1|AF321050_1 (AF321050) NADH
dehydrogenase subunit 1 [Pteropus scapulatus]
Length = 318
Score = 84.7 bits (206), Expect = 1e-15
Identities = 90/311 (28%), Positives = 142/311 (44%), Gaps = 39/311 (12%)
Query: 7 LIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETII 60
+I L+ + + + + ++RK++ MQ R GP + LQP D LKL KE +
Sbjct: 3 MINLLTVIVPILLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPMADALKLFIKEPLR 62
Query: 61 PNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVM 119
P T++ MF AP+L LT + + PM PL ++ + + +LA + ++
Sbjct: 63 PLTSSPSMFIIAPILALTLALTMWIPLPMPH-PLINMNLAVLFMLAMSSLAVYSILWSGW 121
Query: 120 SSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSL---YEH---- 172
+S S Y IGA R VA IS E + + + +V L + FSL +L EH
Sbjct: 122 ASNSKYALIGAMRAVAQTISYEVTLAIILLSV------LLLSGSFSLSTLIITQEHAWLL 175
Query: 173 -NLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
+ W L M+W F+S LA E F++ E E E+ G VEY+G +
Sbjct: 176 LSSWPLA-MMW---------FISTLA-ETNRAPFDLTEGESELVSGFNVEYAGGPFALFF 224
Query: 232 LAESIKEFIAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
+AE I + + A+LF P + + Y NL+ T ++L V R R
Sbjct: 225 MAE-YANIIMMNTLTAILFMGAFHDPTMPELYTTNLITKT----LLLTVFFLWIRASYPR 279
Query: 291 LKITQAVNLLW 301
+ Q ++LLW
Sbjct: 280 FRYDQLMHLLW 290
>pir||S06058 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - Podospora
anserina mitochondrion
Length = 368
Score = 84.3 bits (205), Expect = 2e-15
Identities = 71/261 (27%), Positives = 120/261 (45%), Gaps = 30/261 (11%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLM 54
++V+ L+ +L AYV+I +RK +A MQRR+GP +LQ F D LKL+
Sbjct: 10 IEVVLVLVPALLGIAYVTIA-------ERKTMASMQRRLGPNFVGYYGLLQAFADALKLL 62
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADF- 112
KE + P AN +F PV +T + +LL Y + + P A + Y+L ++
Sbjct: 63 LKEYVAPTQANIILFFLGPV--ITLIFSLLGYAVIPYGPSLAINDFSLGIYYILAVSSLA 120
Query: 113 ---FLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSL 169
L+ G S+ S Y +G+ R A LIS E + + V+ L + S+
Sbjct: 121 TYGILLAGWGSANSKYAFLGSLRSTAQLISYELVLSSAILLVIMLTGSLNL----SVNIE 176
Query: 170 YEHNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGI 229
+ +W + P++ V +F +E F++ EAE E+ G + E++
Sbjct: 177 SQRAIWNIFPLLPV-----FIIFFIGSVAETNRAPFDLAEAESELVSGFMTEHAAVVFVF 231
Query: 230 IKLAESIKEFIAASLVVAVLF 250
LAE + ++ ++LF
Sbjct: 232 FFLAE-YGSIVLMCILTSILF 251
>sp|O78714|NU1M_TACAC NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3401933|dbj|BAA32123.1|
(AB011231) NADH dehydrogenase subunit 1 [Tachyglossus
aculeatus]
Length = 318
Score = 84.3 bits (205), Expect = 2e-15
Identities = 86/319 (26%), Positives = 143/319 (43%), Gaps = 31/319 (9%)
Query: 7 LIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETII 60
LI L+LL V + + I+RK++ MQ R GP I LQP D +KL KE +
Sbjct: 3 LINLLLLIVPVLLAVAFLTLIERKILGYMQFRKGPNIVGPHGLLQPIADAVKLFIKEPLR 62
Query: 61 PNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVM 119
P T++ +MF AP+L L+ + + PM PL ++ + + L+ + ++
Sbjct: 63 PLTSSIYMFILAPILALSLALTIWVPLPMPL-PLIDLNLGLLFILSVSGLSVYSILWSGW 121
Query: 120 SSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLG--SLYEHNLWEL 177
+S S Y GA R VA IS E + + + ++M + F+L +L + +W +
Sbjct: 122 ASNSKYALTGALRAVAQTISYEVTLAIILLSIML------INGSFTLTTLNLTQEFMWLV 175
Query: 178 GPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIK 237
P W +++ F+S LA E F++ E E E+ G VEY+ + LAE
Sbjct: 176 VP-TW---PLMLMWFISTLA-ETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFLAEYAN 230
Query: 238 EFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIF---RTVTGRLKIT 294
I +L V + F G I + T + ++ ++F R R +
Sbjct: 231 IIIMNALTVILFF-------GTYHLIFLPELSTTNFMVKTMLLTSLFLWVRASYPRFRYD 283
Query: 295 QAVNLLWTRVFAASIVGAL 313
Q ++LLW ++V L
Sbjct: 284 QLMHLLWKNFLPITLVTCL 302
>gi|11467870 subunit 1 of NADH-plastoquinoneoxidoreductase [Nephroselmis
olivacea] >gi|5880799|gb|AAD54892.1|AF137379_115
(AF137379) subunit 1 of NADH-plastoquinoneoxidoreductase
[Nephroselmis olivacea]
Length = 362
Score = 84.3 bits (205), Expect = 2e-15
Identities = 79/337 (23%), Positives = 149/337 (43%), Gaps = 32/337 (9%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLMSK 56
V++ + ++ L ++ L+ ++RK+ A +Q+R+GP +LQP D LKL+ K
Sbjct: 29 VLWVPLPILSLVIVATLGVLVIVWLERKISAGVQQRVGPEYGGALGLLQPLADGLKLVFK 88
Query: 57 ETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFAT-KGDIIVFIYLLTLADFFL 114
E ++P ++ ++F P +++ + P G + A + I +I + ++A L
Sbjct: 89 EDVVPAKSDTWLFTLGPAVVVIPIFLAYLVVPFGQQLIIADLRIGIFFWIAISSIAPIGL 148
Query: 115 ILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMW---GISKLGVQKPFSLGSLYE 171
++ S + Y +G R A IS E + + V +V +S + + + S +
Sbjct: 149 LMSGYGSNNKYSFLGGLRAAAQSISYELPLAICVLSVCLLADSLSTVDIVESQSSWGILT 208
Query: 172 HNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
N+W P+ +VA F+ +E E F++PEAEEE+ G EY+G G+
Sbjct: 209 WNIWRQ-PIGFVA-------FLIAALAECERLPFDLPEAEEELVAGYQTEYTGMKFGLFY 260
Query: 232 LAESIKEFIAASLVVAVLFPWQVGIPGIQGYI------------VNLLIHTAKVFIVLLV 279
+ + ++ V + G I G + + + K F+ L
Sbjct: 261 VGSYVNLLVSGCFVTVLYLGGWHGPFAIDGILPDSPPFQVLDAFLGITWTLLKTFLFLFA 320
Query: 280 AKTIFRTVTGRLKITQAVNLLWTRVFAASIVGALLLA 316
A + R R++I Q ++L W + S+ LL A
Sbjct: 321 A-ILTRWTLPRVRIDQLLDLGWKFLLPVSLGNLLLTA 356
>gi|11466477 NADH dehydrogenase subunit 1 [Chrysodidymus synuroideus]
>gi|7110474|gb|AAF36946.1|AF222718_20 (AF222718) NADH
dehydrogenase subunit 1 [Chrysodidymus synuroideus]
Length = 326
Score = 84.3 bits (205), Expect = 2e-15
Identities = 85/329 (25%), Positives = 148/329 (44%), Gaps = 39/329 (11%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
+K+++ ++ L++ AY F+ +RK++ + RR GP + LQP D KL
Sbjct: 9 IKILFIIVPLLISVAY-------FTLAERKILGAIHRRRGPNVVGVMGLLQPLSDGFKLF 61
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGF---SPLFATKGDIIVFIYLLTLA 110
KE I+P+++N +F +P + T +I+LL + + F S L I+ F+ + +L
Sbjct: 62 VKEAIVPSSSNKLIFILSPAV--TFIISLLGWAIVPFNKYSTLAEINLGILYFLAISSLG 119
Query: 111 DFFLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY 170
+ +I+ SS S Y +G+ R A +IS E A+ + ++ S+GS
Sbjct: 120 IYGIIMSGWSSNSKYAFLGSLRSTAQMISYEVAIGFIITTII-----------ISVGSFN 168
Query: 171 EHNLWELGPMVW--VAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLG 228
+ + W + L +F +E F++PEAE E+ G VEYS
Sbjct: 169 LQEIIDSQKFCWFIITFFPLFLMFSISGLAETNRHPFDLPEAESELVSGYNVEYSAMSFA 228
Query: 229 IIKLAESIKEFIAASLV-VAVLFPWQVGIPGIQGYIVNLLIHTAKV--FIVLLVAKTIFR 285
+ L E + +S V + L WQ + + +I N K+ F++L V R
Sbjct: 229 LFSLGEYSNMLLMSSFVTILFLGGWQSPL-SLLIFIPNSFWFGIKISFFVILFV---WIR 284
Query: 286 TVTGRLKITQAVNLLWTRVFAASIVGALL 314
R + Q ++L W + SI +L
Sbjct: 285 AALPRYRYDQLMSLGWKGLLPLSIAILIL 313
>gi|11545709 NADH dehydrogenase subunit 1 [Sardinops melanostictus]
>gi|11526559|dbj|BAB18602.1| (AB032554) NADH
dehydrogenase subunit 1 [Sardinops melanostictus]
Length = 324
Score = 84.3 bits (205), Expect = 2e-15
Identities = 86/320 (26%), Positives = 148/320 (45%), Gaps = 38/320 (11%)
Query: 7 LIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETII 60
++ ++L A++++I +RK++ MQ R GP + LQP D +KL KE +
Sbjct: 16 IVPVLLAVAFLTLI-------ERKVLGYMQLRKGPNVVWPYGLLQPIADGVKLFLKEPVR 68
Query: 61 PNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVM 119
P+T++ +F P L LT + L A PM F P+ ++ + L +LA + ++
Sbjct: 69 PSTSSPLLFLVTPTLALTLALTLWAPLPMPF-PVVDLNLSMLFILALSSLAVYSILGSGW 127
Query: 120 SSGSPYGRIGAAREVAMLISREPAM---MLGVFAVMWGISKLGVQKPFSLGSLYEHNLWE 176
+S S Y IGA R VA +S E A+ +L + G + S+ S+ + +W
Sbjct: 128 ASNSKYALIGALRAVAQTVSYEVALGLILLCTIVLTGGFT-------LSMFSIAQEGIWL 180
Query: 177 LGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESI 236
L P A + ++S LA E F++ E E E+ G VEY+G + LAE
Sbjct: 181 LVP----AWPLAAMWYISTLA-ETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAE-Y 234
Query: 237 KEFIAASLVVAVLFPWQVGIPGIQGY-IVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQ 295
+ + + AVLF P + +N++ A + V L + + R + Q
Sbjct: 235 ANILFMNTLSAVLFMGAAHFPSFPEFTTMNIMFKAALLSGVFLWVRASY----PRFRYDQ 290
Query: 296 AVNLLWTRVFAASIVGALLL 315
++L+W ++ AL+L
Sbjct: 291 LMHLVWKNFLPVTL--ALIL 308
>pir||E81991 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain H NMA0009
[imported] - Neisseria meningitidis (group A strain
Z2491) >gi|7378787|emb|CAB83329.1| (AL162752) NADH
dehydrogenase I chain H [Neisseria meningitidis Z2491]
Length = 358
Score = 83.9 bits (204), Expect = 2e-15
Identities = 77/279 (27%), Positives = 125/279 (44%), Gaps = 31/279 (11%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
+K++ LI LIL AY++ +RK++ MQ R+GP + +QPF D KL+
Sbjct: 30 VKIVIILIPLILTVAYLTYF-------ERKVIGFMQLRVGPNVTGPWGLIQPFADVFKLL 82
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLT-LADF 112
KE P +N +F P++ L A A P + +++I ++T L+ +
Sbjct: 83 FKEVTRPRLSNKALFYIGPIMSLAPSFAAWAVIPFNEEWVLTNINIGLLYILMITSLSVY 142
Query: 113 FLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQ-------KPFS 165
+I+ +S S Y +GA R A IS E AM + V+ + K +
Sbjct: 143 GVIIAGWASNSKYSFLGAMRASAQSISYEIAMSAALVCVVMVSGSMNFSDIVAAQAKGIA 202
Query: 166 LGSLYEHNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGR 225
GS++ N L P + ++Y+ + +E F++ E E EI G VEYSG
Sbjct: 203 GGSVFSWNWLPLFP------IFIVYLISA--VAETNRAPFDVAEGESEIVAGHHVEYSGF 254
Query: 226 YLGIIKLAESIKEFIAASLV-VAVLFPWQVGIPGIQGYI 263
+ LAE I + ++L + L W P G+I
Sbjct: 255 AFALFFLAEYIFMILISALTSLMFLGGWLSPFPQSWGFI 293
>gb|AAF66623.1| (AF142993) NADH dehydrogenase subunit 1 [Glossophaga soricina]
Length = 308
Score = 83.9 bits (204), Expect = 2e-15
Identities = 82/315 (26%), Positives = 144/315 (45%), Gaps = 42/315 (13%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
+ ++ +I ++L A+++++ +RK++ MQ R GP + LQP D +KL
Sbjct: 4 VNLLTTIIPILLAVAFLTLV-------ERKILGYMQLRKGPNVVGPHGLLQPIADAVKLF 56
Query: 55 SKETIIPNTANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE + P T++ MF AP+L LT + + PM PL ++ + + +LA +
Sbjct: 57 TKEPLHPLTSSITMFIIAPILALTLALTMWIPLPMP-HPLVNMNLSVLFLLAMSSLAVYA 115
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--E 171
++ +S S Y IG+ R VA IS E + + + +V L + +SL SL +
Sbjct: 116 ILWSGWASNSKYALIGSLRAVAQTISYEVTLAIILLSV------LLMSGSYSLSSLITTQ 169
Query: 172 HNLWELGP-----MVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRY 226
+W + P M+W F+S LA E F++ E E E+ G VEY+G
Sbjct: 170 EYIWLILPSWPLTMMW---------FISTLA-ETNRAPFDLTEGESELVSGFNVEYAGGP 219
Query: 227 LGIIKLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRT 286
+ LAE + +L + + + Y +N + T ++L + R
Sbjct: 220 FALFFLAEYANIIMMNALTTILFLGAYNNLLYPEMYSINFAVKT----LLLTMTFLWIRA 275
Query: 287 VTGRLKITQAVNLLW 301
R + Q ++LLW
Sbjct: 276 SYPRFRYDQLMHLLW 290
>pir||B40358 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - garden
petunia mitochondrion
Length = 325
Score = 83.9 bits (204), Expect = 2e-15
Identities = 80/311 (25%), Positives = 143/311 (45%), Gaps = 35/311 (11%)
Query: 28 DRKLVARMQRRIGPPI------LQPFYDFLKLMSKETIIPNTAN-FMFRAAPVLMLTTVI 80
+RK++A +QRR GP + LQP D LKL+ KE I P++AN F+FR APV +
Sbjct: 27 ERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLILKEPISPSSANFFLFRMAPVATFMLSL 86
Query: 81 ALLAYTPMGFSPLFATKGDIIVFIYLL-TLADFFLILGVMSSGSPYGRIGAAREVAMLIS 139
A P + + + +++++ + +L + +I+ SS S Y +GA R A ++S
Sbjct: 87 VAWAVVPFDYGMVLSDLNIGLLYLFAISSLGVYGIIIAGWSSNSKYAFLGALRSAAQMVS 146
Query: 140 REPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELGPMVWVAGVILIYVFMSWLASE 199
E ++ L + V+ + + + + + +W P+ +L+ F+S LA E
Sbjct: 147 YEVSIGLILITVLICVGSCNLSEIV----MAQKQIWFGIPLF----PVLVMFFISCLA-E 197
Query: 200 IEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEFIAASLVVAVL---------F 250
F++PEAE E+ G VEYS + L E + + L ++
Sbjct: 198 TNRAPFDLPEAEAELVAGYNVEYSSMGFALFFLGEYANMILMSGLCTSLFLGGWLPILDL 257
Query: 251 PWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQAVNLLWTRVFAASIV 310
P IPG + + ++ +F+ + V R R + Q + L W +VF +
Sbjct: 258 PIFKKIPGSIWFSIKVIFF---LFLYIWV-----RAAFPRYRYDQLMGLGW-KVFLPLSL 308
Query: 311 GALLLALGVMI 321
++ GV++
Sbjct: 309 AWVVSVSGVLV 319
>pir||S49576 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - Arabidopsis
thaliana mitochondrion >gi|572521|emb|CAA57940.1|
(X82618) mitochondrial NADH dehydrogenase [Arabidopsis
thaliana]
Length = 325
Score = 83.9 bits (204), Expect = 2e-15
Identities = 81/311 (26%), Positives = 144/311 (46%), Gaps = 35/311 (11%)
Query: 28 DRKLVARMQRRIGPPI------LQPFYDFLKLMSKETIIPNTAN-FMFRAAPVLMLTTVI 80
+RK++A +QRR GP + LQP D LKL+ KE I P++AN F+FR APV +
Sbjct: 27 ERKVMAFVQRRKGPDVVGSFGLLQPLADGLKLILKEPISPSSANFFLFRMAPVATFMLSL 86
Query: 81 ALLAYTPMGFSPLFATKGDIIVFIYLL-TLADFFLILGVMSSGSPYGRIGAAREVAMLIS 139
A P + + + +++++ + +L + +I+ SS S Y +GA R A ++S
Sbjct: 87 VAWAVVPFDYGMVLSDLNIGLLYLFAISSLGVYGIIIAGWSSNSKYAFLGALRSAAQMVS 146
Query: 140 REPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELGPMVWVAGVILIYVFMSWLASE 199
E ++ L + V+ + + + + + +W P+ +L+ F+S LA E
Sbjct: 147 YEVSIGLILITVLICVGSCNLSEIV----MAQKQIWFGIPLF----PVLVMFFISCLA-E 197
Query: 200 IEVGFFNIPEAEEEIAEGTLVEYS---------GRYLGIIKLAESIKEFIAASLVVAVLF 250
F++PEAE E+ G VEYS G Y +I ++ F + +
Sbjct: 198 TNRAPFDLPEAEAELVAGYNVEYSSMGFALFFLGEYANMILMSGLCTLFFLGGWLPILDL 257
Query: 251 PWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQAVNLLWTRVFAASIV 310
P IPG + + +L +F+ + V R R + Q + L W +VF +
Sbjct: 258 PIFKKIPGSIWFSIKVLFF---LFLYIWV-----RAAFPRYRYDQLMGLGW-KVFLPLSL 308
Query: 311 GALLLALGVMI 321
++ G+++
Sbjct: 309 AWVVSVSGLLV 319
>sp|O21077|NU1M_MYXGL NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|7431965|pir||T13816 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
Atlantic hagfish mitochondrion
>gi|2340020|emb|CAA70716.1| (Y09527) NADH dehydrogenase
subunit 1 [Myxine glutinosa]
Length = 318
Score = 83.9 bits (204), Expect = 2e-15
Identities = 87/306 (28%), Positives = 139/306 (44%), Gaps = 23/306 (7%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSK 56
+I +I L + + I + I+RK++ MQ R GP I LQPF D +KL K
Sbjct: 1 MISQIISSFLTFVMILIAVAFLTLIERKVLGYMQLRKGPNIVGPFGLLQPFADGIKLFIK 60
Query: 57 ETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLI 115
E + P+ A+ F+F AP L ++ + L P+ + G ++ + + +L+ + L+
Sbjct: 61 EPLQPSYASIFLFILAPALAISLALILWISLPLPLALSDMNLG-LMFILAISSLSVYSLL 119
Query: 116 LGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLW 175
+S S Y +GA R VA IS E + LG+ V I G + ++ +W
Sbjct: 120 TSGWASNSKYALMGALRAVAQTISYE--VTLGLMIVALTILSGGFDLKLFID--LQNKIW 175
Query: 176 ELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAES 235
L PM W I + F+S LA E F++ E E E+ G VE+SG + LAE
Sbjct: 176 LLFPM-W---PIFLMWFISTLA-ETNRSPFDLTEGESELVSGFNVEFSGGLFALFFLAEY 230
Query: 236 IKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQ 295
SL V VLF +G + + + +F++ L R R + Q
Sbjct: 231 ANILFMNSLTV-VLF---MGSSNLSSLYFSASMTMKTMFLIFLFLWV--RASYPRFRYDQ 284
Query: 296 AVNLLW 301
++L+W
Sbjct: 285 LMHLMW 290
>gi|11466331 NADH dehydrogenase subunit 1 [Cafeteria roenbergensis]
>gi|6180113|gb|AAF05810.1|AF193903_33 (AF193903) NADH
dehydrogenase subunit 1 [Cafeteria roenbergensis]
Length = 336
Score = 83.9 bits (204), Expect = 2e-15
Identities = 91/343 (26%), Positives = 155/343 (44%), Gaps = 42/343 (12%)
Query: 2 KVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLMS 55
+++Y L +I + V+ LL +R+++ + RR GP +LQ D LKL++
Sbjct: 8 QILYFLALIIFVLLSVAFYVLL----ERQILGHVTRRQGPSTVGIFGLLQTIADALKLLA 63
Query: 56 KETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF- 113
KE++ P + N +F AP+ T +AL + + F +A + +YLL L+
Sbjct: 64 KESVFPRSINTIVFIFAPIF--TCGLALANWVVIPFGNGWAVADFNLGVLYLLALSSLSV 121
Query: 114 --LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYE 171
+I+ SS S Y +GA R A +IS E AM L + +V+ L + + +
Sbjct: 122 HSIIMAGWSSNSKYAFLGALRSAAQMISYEIAMGLILLSVILLSQSLNLTDIV----MAQ 177
Query: 172 HNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
+N+W P+ L +F+ + +E F++PEAE E+ G VEYS +
Sbjct: 178 YNVWFFIPLF-----PLFLMFLICILAETNRHPFDLPEAEAELVSGYNVEYSAVGFVLFF 232
Query: 232 LAESIKEFIAASLVVAVLFPWQVGIP---------GI-----QGYIVNLLIHTAKVFIVL 277
LAE I S +LF +P GI + Y+ L + K +V+
Sbjct: 233 LAE-YNNIIMMSAFTNILFLGGWNVPFYSFWFFGDGILRNIFESYLWPSLFFSLKTILVM 291
Query: 278 LVAKTIFRTVTGRLKITQAVNLLWTRVFAASIVGALLLALGVM 320
+ I RT R + Q + L W ++F + L++ L ++
Sbjct: 292 IFF-VIIRTALPRYRYDQLMRLGW-KIFLPLALAFLIIYLSIL 332
>pir||E81219 NADH dehydrogenase I, H chain NMB0250 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225473|gb|AAF40704.1| (AE002382) NADH dehydrogenase
I, H subunit [Neisseria meningitidis MC58]
Length = 358
Score = 83.9 bits (204), Expect = 2e-15
Identities = 78/280 (27%), Positives = 124/280 (43%), Gaps = 37/280 (13%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
+K++ LI LIL AY++ +RK++ MQ R+GP + +QPF D KL+
Sbjct: 30 VKIVIILIPLILTVAYLTYF-------ERKVIGFMQLRVGPNVTGPWGLIQPFADVFKLL 82
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLT-LADF 112
KE P +N +F P++ L A A P + +++I ++T L+ +
Sbjct: 83 FKEVTRPKLSNKALFYIGPIMSLAPSFAAWAVIPFNEEWVLTNINIGLLYILMITSLSVY 142
Query: 113 FLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQ-------KPFS 165
+I+ +S S Y +GA R A IS E AM + V+ + K +
Sbjct: 143 GVIIAGWASNSKYSFLGAMRASAQSISYEIAMSAALVCVVMVSGSMNFSDIVAAQAKGIA 202
Query: 166 LGSLYEHNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGR 225
GS++ N L P + ++Y+ + +E F++ E E EI G VEYSG
Sbjct: 203 GGSVFSWNWLPLFP------IFIVYLISA--VAETNRAPFDVAEGESEIVAGHHVEYSGF 254
Query: 226 YLGIIKLAESIKEFIAASLVVAVL-------FPWQVGIPG 258
+ LAE I + A+L + FP GI G
Sbjct: 255 AFALFFLAEYIFMILIAALTSLMFLGGWLSPFPQSWGIVG 294
>gi|5835555 NADH dehydrogenase subunit 1 [Ovis aries]
>gi|6093557|sp|O78747|NU1M_SHEEP NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431945|pir||T11050 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - sheep
mitochondrion >gi|3366623|gb|AAD10096.1| (AF010406) NADH
dehydrogenase subunit 1 [Ovis aries]
Length = 318
Score = 83.5 bits (203), Expect = 3e-15
Identities = 82/311 (26%), Positives = 146/311 (46%), Gaps = 34/311 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
+ V+ +I ++L A+++++ +RK++ MQ R GP + LQP D +KL
Sbjct: 4 INVLTLIIPILLAVAFLTLV-------ERKVLGYMQFRKGPNVVGPYGLLQPIADAIKLF 56
Query: 55 SKETIIPNTANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
KE + P T++ MF AP+L LT + + PM + PL ++ + + +LA +
Sbjct: 57 IKEPLRPATSSISMFILAPILALTLALTMWIPLPMPY-PLINMNLGVLFMLAMSSLAVYS 115
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--E 171
++ +S S Y IGA R VA IS E + + + +V L + F+L +L +
Sbjct: 116 ILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSV------LLMNGSFTLSTLIITQ 169
Query: 172 HNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
+W +++ A + + F+S LA E F++ E E E+ G VEY+ +
Sbjct: 170 EQVW----LIFPAWPLAMMWFISTLA-ETNRAPFDLTEGESELVSGFNVEYAAGPFALFF 224
Query: 232 LAESIKEFIAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
+AE I ++ LF P + + Y +N I + + I L + + R
Sbjct: 225 MAE-YANIIMMNIFTTTLFLGAFHNPYMPELYTINFTIKSLLLSITFLWIRASY----PR 279
Query: 291 LKITQAVNLLW 301
+ Q ++LLW
Sbjct: 280 FRYDQLMHLLW 290
>gi|11466443 subunit 1 of NADH-plastoquinoneoxidoreductase [Mesostigma viride]
>gi|7259586|gb|AAF43887.1|AF166114_99 (AF166114) subunit
1 of NADH-plastoquinoneoxidoreductase [Mesostigma
viride]
Length = 367
Score = 83.5 bits (203), Expect = 3e-15
Identities = 82/336 (24%), Positives = 155/336 (45%), Gaps = 40/336 (11%)
Query: 10 LILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLMSKETIIPNT 63
L+++ A V ++ +++ ++RK+ A +Q+RIGP +LQP D LKL KE IIP+
Sbjct: 36 LLIILAVVGVLVVVW--LERKISAAVQQRIGPEYAGPLGVLQPLADGLKLAFKEDIIPSK 93
Query: 64 AN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKG-DIIVFIYLLTLADFFLILGVMSS 121
+ +F P +++ + P G + + + I +I + ++A L++ S
Sbjct: 94 GDVLLFTLGPAIVVIPIFLSYLIVPFGENLIVSNINLGIFFWITVSSVAPLGLLMSGYGS 153
Query: 122 GSPYGRIGAAREVAMLISREPAMMLGVFAVMW---GISKLGVQKPFSLGSLYEHNLWELG 178
+ Y +G R A +S E + L V ++ +S + + + S + N+W
Sbjct: 154 NNKYSFLGGLRATAQSLSYEIPLALCVLSICLLSDSLSTIDIVQKQSTYGILGWNIWR-Q 212
Query: 179 PMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKE 238
P+ ++A +I +E E F++PEAEEE+ G EY+G G+ + +
Sbjct: 213 PIGFIAFIIA-------ALAECERLPFDLPEAEEELVAGYQTEYTGMKFGLFYIGSYVNL 265
Query: 239 FIAASLVVAVLF--PWQVGIP--------GIQGYIVNLLIHTAKVFIVLLVAKT------ 282
++A L +VL+ W + IP + + + +A + I + + KT
Sbjct: 266 LVSA-LFASVLYLGGWSLPIPIEFLLNKMSLNASDSEVQVISAFLGIGMTLLKTYLFLFL 324
Query: 283 --IFRTVTGRLKITQAVNLLWTRVFAASIVGALLLA 316
+ R R++I Q ++L W + S+ LL A
Sbjct: 325 SILTRWTMPRVRIDQLLDLGWKFLLPISLGNLLLTA 360
>gi|5834954 NADH dehydrogenase subunit 1 [Mus musculus]
>gi|1352542|sp|P03888|NU1M_MOUSE NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7427764|pir||QXMS1M NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - mouse
mitochondrion >gi|578831|emb|CAA24080.1| (V00711)
unidentified reading frame 1 [Mus musculus]
>gi|896295|gb|AAB48644.1| (J01420) protein 1 [Mus
musculus]
Length = 315
Score = 83.1 bits (202), Expect = 4e-15
Identities = 87/312 (27%), Positives = 144/312 (45%), Gaps = 36/312 (11%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
M ++ L+ +++ A+++++ +RK++ MQ R GP I LQPF D +KL
Sbjct: 1 MNILTLLVPILIAMAFLTLV-------ERKILGYMQLRKGPNIVGPYGILQPFADAMKLF 53
Query: 55 SKETIIPNTANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
KE + P T + +F AP L LT ++L PM PL I+ + +L+ +
Sbjct: 54 MKEPMRPLTTSMSLFIIAPTLSLTLALSLWVPLPMP-HPLINLNLGILFILATSSLSVYS 112
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
++ +S S Y GA R VA IS E M + + +V+ +Q +L + EH
Sbjct: 113 ILWSGWASNSKYSLFGALRAVAQTISYEVTMAIILLSVLLMNGSYSLQ---TLITTQEH- 168
Query: 174 LWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLA 233
+W L P A + + F+S LA E F++ E E E+ G VEY+ + +A
Sbjct: 169 MWLLLP----AWPMAMMWFISTLA-ETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMA 223
Query: 234 ESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNL--LIHTAKVFIVLLVAKTI--FRTVTG 289
E I + + ++F + Y +NL L T + LL++ T R
Sbjct: 224 E-YTNIILMNALTTIIFLGPL-------YYINLPELYSTNFMMEALLLSSTFLWIRASYP 275
Query: 290 RLKITQAVNLLW 301
R + Q ++LLW
Sbjct: 276 RFRYDQLMHLLW 287
>sp|O78709|NU1M_NOTTY NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3401923|dbj|BAA32118.1|
(AB011226) NADH dehydrogenase subunit 1 [Notoryctes
typhlops]
Length = 318
Score = 83.1 bits (202), Expect = 4e-15
Identities = 85/311 (27%), Positives = 147/311 (46%), Gaps = 34/311 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
M ++ +I ++L A++++I +RK++ MQ R GP + LQPF D +KL
Sbjct: 4 MNLLLYIIPILLAVAFLTLI-------ERKVLGYMQFRKGPNVVGPYGLLQPFADAVKLF 56
Query: 55 SKETIIP-NTANFMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE + P +++ M+ AP L LT + + PM +S + G ++ + L +L+ +
Sbjct: 57 TKEPLHPLSSSVLMYTLAPTLALTLALTIWTPLPMPYSLVDLNLG-LLFILALSSLSVYS 115
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--E 171
++ +S S Y GA R VA IS E + + + ++M + F+L +L +
Sbjct: 116 ILWSGWASNSKYPLAGALRAVAQTISYEVTLAIILLSIMM------INGSFTLKNLIITQ 169
Query: 172 HNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
N+W + P A + + F+S LA E F++ E E E+ G VEY+ +
Sbjct: 170 ENMWLIVP----AWPLAMMWFISTLA-ETNRAPFDLTEGESELVSGFNVEYTAGPFAMFF 224
Query: 232 LAESIKEFIAASLVVAVLFPWQVGIPGIQGYI-VNLLIHTAKVFIVLLVAKTIFRTVTGR 290
LAE I + + +LF +G Q + VN K+ I+ L + R R
Sbjct: 225 LAE-YANIIIMNALTTMLF---LGPSFNQDFTHVNTFTFMTKMMILTLTFLWV-RASYPR 279
Query: 291 LKITQAVNLLW 301
+ Q + LLW
Sbjct: 280 FRYDQLMQLLW 290
>gi|10803739 NADH dehydrogenase subunit 1 [Gonostoma gracile]
>gi|5509866|dbj|BAA82485.1| (AB016274) NADH
dehydrogenase subunit 1 [Gonostoma gracile]
Length = 321
Score = 83.1 bits (202), Expect = 4e-15
Identities = 91/328 (27%), Positives = 148/328 (44%), Gaps = 32/328 (9%)
Query: 7 LIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLMSKETII 60
L+ ++L V + + ++RK++ MQ R GP +LQP D +KL +KE I
Sbjct: 6 LVNPLVLAVPVLLAVAFLTLLERKILGYMQLRKGPNTIGPYGLLQPVADGVKLFTKEPIR 65
Query: 61 PNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGV- 118
P+T++ MF A P+L LT +ALL +TP+ A ++FI L+ + ILG
Sbjct: 66 PSTSSPLMFLATPILALT--LALLLWTPLPAPYPAADLNLGLLFILALSSLAVYSILGSG 123
Query: 119 MSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELG 178
+S S Y IGA R +A IS E ++ L + + +Q +L + E N+W +
Sbjct: 124 WASNSKYALIGALRAIAQTISYEVSLGLILLCTITFAGNFTLQ---TLNAAQE-NMWLIL 179
Query: 179 PMVWVAGVILIYVFMSWLAS---EIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAES 235
P W A + WL S E F++ E E E+ G VEY+ + LAE
Sbjct: 180 P-AWPAAAM-------WLVSTLAETNRTPFDLAEGESELVSGFNVEYAAGPFALFFLAEY 231
Query: 236 IKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQ 295
+L + + + +NL++ TA + I L R R + Q
Sbjct: 232 ANILFMNALSTTLFLGPSLNPHTPELSTLNLMLKTALLSISFLWV----RATLPRFRYDQ 287
Query: 296 AVNLLWTR---VFAASIVGALLLALGVM 320
++L+W + A ++ L L + +M
Sbjct: 288 LMHLIWKNFLPITLALVLWHLALPIALM 315
>gi|11497479 NADH dehydrogenase (ubiquinone), subunit 1 [Prototheca wickerhamii]
>gi|7431941|pir||T11938 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - Prototheca wickerhamii
mitochondrion >gi|467870|gb|AAD12657.1| (U02970) NADH
dehydrogenase (ubiquinone), subunit 1 [Prototheca
wickerhamii]
Length = 328
Score = 82.7 bits (201), Expect = 5e-15
Identities = 87/341 (25%), Positives = 151/341 (43%), Gaps = 48/341 (14%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPIL------QPFYDFLKLM 54
+K++ + LIL A++ + +RK++A MQRR GP ++ QP D LKL+
Sbjct: 10 LKILALTVPLILSVAFLVLA-------ERKVLASMQRRKGPNVVGIYGIFQPIADGLKLI 62
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLT-LADF 112
KE ++P++AN + F APVL A P G + A +++++ ++ L +
Sbjct: 63 VKEPVLPSSANLVIFLFAPVLTFLLSQVAWASIPFGEGLVIADIHAGLLYVFAISSLGIY 122
Query: 113 FLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEH 172
+I SS S Y +G+ R A ++S E ++ L + V L + + + +
Sbjct: 123 GVITAGWSSNSKYAFLGSCRSAAQMVSYEVSIGLILITVCICAGSLNLTEIV----IAQT 178
Query: 173 NLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKL 232
+W P+ +LI F+S LA E F++PEAE E+ G VEYS + L
Sbjct: 179 QIWYCIPLF----PLLIMFFISCLA-ETNRAPFDLPEAEAELVAGYNVEYSSMGFALFFL 233
Query: 233 AESIKEFIAASLVVA------------VLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVA 280
E + +SL +F W IPG+ + + + + L A
Sbjct: 234 GEYANMIVMSSLCCIFFLGGWLPPFDFAIFYW---IPGVFWFSLKV--------VFFLFA 282
Query: 281 KTIFRTVTGRLKITQAVNLLWTRVFAASIVGALLLALGVMI 321
R R + Q + L W + S+ + +A G+++
Sbjct: 283 FIWVRAAFPRYRYDQLMRLGWKVLLPLSLAWVIYVA-GILL 322
>gi|5836059 NADH dehydrogenase subunit 1 [Ornithorhynchus anatinus]
>gi|2499232|sp|Q37717|NU1M_ORNAN NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431900|pir||A58888 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
duckbill platypus mitochondrion
>gi|1469250|emb|CAA58455.1| (X83427) NADH dehydrogenase
subunit 1 [Ornithorhynchus anatinus]
Length = 318
Score = 82.7 bits (201), Expect = 5e-15
Identities = 84/319 (26%), Positives = 144/319 (44%), Gaps = 31/319 (9%)
Query: 7 LIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETII 60
L+ L++L V + + ++RK++ MQ R GP I LQP D +KL +KE +
Sbjct: 3 LVNLLILIIPVLLAVAFLTLLERKILGYMQFRKGPNIVGAHGLLQPIADAVKLFTKEPLR 62
Query: 61 PNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVM 119
P T++ +MF AP+L L+ + + PM PL ++ + + L+ + ++
Sbjct: 63 PLTSSIYMFILAPILALSLALTIWIPLPMPL-PLIDLNLGLLFVLSVSGLSVYSILWSGW 121
Query: 120 SSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--EHNLWEL 177
+S S Y GA R VA IS E + + + ++M + F+L +L + +W +
Sbjct: 122 ASNSKYALTGALRAVAQTISYEVTLAIILLSIML------INGSFTLTTLNLTQEYMWLI 175
Query: 178 GPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIK 237
P W +++ F+S LA E F++ E E E+ G VEY+ + LAE
Sbjct: 176 VP-TWP---LMLMWFISTLA-ETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFLAEYAN 230
Query: 238 EFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIF---RTVTGRLKIT 294
I +L V + F G I + T I ++ ++F R R +
Sbjct: 231 IIIMNALTVILFF-------GTYHLIFLPEMSTTTFMIKTMLLTSLFLWIRASYPRFRYD 283
Query: 295 QAVNLLWTRVFAASIVGAL 313
Q ++LLW ++V L
Sbjct: 284 QLMHLLWKNFLPITLVTCL 302
>gb|AAF61228.1|AF234896_1 (AF234896) NADH dehydrogenase I [Haemulon plumieri]
Length = 324
Score = 82.7 bits (201), Expect = 5e-15
Identities = 89/331 (26%), Positives = 149/331 (44%), Gaps = 32/331 (9%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSK 56
VI I + L V + + ++RK++ MQ R GP + LQP D +KL K
Sbjct: 5 VIIHTINTLTLIVPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIK 64
Query: 57 ETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLI 115
E + P+T++ +F AP+L L+ + L A P+ + + G I+FI L+ + I
Sbjct: 65 EPVRPSTSSPLLFLLAPMLALSLALTLWAPMPLPYPMVDLNLG--ILFILALSSLTVYSI 122
Query: 116 LGV-MSSGSPYGRIGAAREVAMLISREPAM---MLGVFAVMWGISKLGVQKPFSLGSLYE 171
LG +S S Y IGA R VA IS E ++ +LG + G + F ++ +
Sbjct: 123 LGSGWASNSKYALIGALRAVAQTISYEVSLGLILLGTIIFIGGFT-------FQTFNVAQ 175
Query: 172 HNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
++W + P +A + + F +E F++ E E E+ G VEY+G +
Sbjct: 176 ESVWLIFPAWPLAAMWYVSTF-----AETNRAPFDLTEGESELVSGFNVEYAGGPFALFF 230
Query: 232 LAESIKEFIAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
LAE + + + A LF P + +NL+ A + I L + + R
Sbjct: 231 LAE-YANILLMNTLSATLFMGASHAPLYPELTAINLMTKAALLSIAFLWVRASY----PR 285
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ Q ++L+W + F + L+ L V I
Sbjct: 286 FRYDQLMHLIW-KAFLPLTLALLIWHLAVPI 315
>gi|5835861 NADH dehydrogenase subunit 1 [Daphnia pulex]
>gi|7431954|pir||T11362 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - Daphnia pulex mitochondrion
>gi|4927682|gb|AAD33242.1|AF117817_13 (AF117817) NADH
dehydrogenase subunit 1 [Daphnia pulex]
Length = 311
Score = 82.3 bits (200), Expect = 7e-15
Identities = 77/259 (29%), Positives = 124/259 (47%), Gaps = 26/259 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLM 54
++VI L+ ++ + V+ +L +RKL+ +Q R GP +LQPF D +KL
Sbjct: 2 IQVILFLVVVVCVLVGVAFFTLF----ERKLLGYIQLRKGPNKVGLGGVLQPFSDAIKLF 57
Query: 55 SKETIIPNTANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
SKE + P+T+N+ F AP L + + P F+ L K ++ F+ L + +
Sbjct: 58 SKEHVSPSTSNYSAFLIAPCFSLGLSLLMWLSIPSFFNLLSFNK-SVLFFLCGLGVGVYG 116
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSL--YE 171
L+ SS S Y IG R VA +S E +++L +F + L V + LGS ++
Sbjct: 117 LLAAGWSSNSKYSLIGCLRGVAQTVSYEVSLVLILF------TPLVVTVGYELGSFSSFQ 170
Query: 172 HNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
NLW +++ + F+S LA E F+ E E E+ G EYS +I
Sbjct: 171 ENLW----FIFIFPAAGLIWFISCLA-ETNRTPFDFAEGESELVSGYNTEYSSGGFALIM 225
Query: 232 LAESIKEFIAASLVVAVLF 250
LAE + S + +V+F
Sbjct: 226 LAE-YTSILFMSFLFSVIF 243
>gb|AAF31674.1|AF178679_1 (AF178679) NADH dehydrogenase subunit 1 [Galathealinum brachiosum]
Length = 307
Score = 82.3 bits (200), Expect = 7e-15
Identities = 79/322 (24%), Positives = 150/322 (46%), Gaps = 27/322 (8%)
Query: 6 ALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPILQ------PFYDFLKLMSKETI 59
++I +IL Y + + F+ ++RK + +Q R GP + PF D +KL KE
Sbjct: 3 SIIIIILTYFMILLSMAFFTLLERKFLGYVQLRKGPNKISLMGIPLPFADAIKLFCKEYS 62
Query: 60 IPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGV 118
+++NF+ F +P+L L + + P F P F + ++FI ++ + L+L
Sbjct: 63 SISSSNFLLFIMSPILSLLMALIMWILYPF-FYPNFFFQFGSLLFICFSSIMIYPLMLAG 121
Query: 119 MSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELG 178
SS S Y IGA R +A IS E M + +++ F + E + +
Sbjct: 122 WSSNSKYALIGAIRSIAQTISYEVNMSFIILSIL---------IMFMSFNFMEMSFKFMT 172
Query: 179 PMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKE 238
PM ++ L +++ S + +E F++ E E E+ G +EYS I +AE
Sbjct: 173 PM-FMMFPFLFFIWFSTILAETNRTPFDLSEGESELVSGFNIEYSSNSFAFIFMAE-YTN 230
Query: 239 FIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQAVN 298
++ S++ ++ F I Q + L + + K+ I+ L+ I R R++ +N
Sbjct: 231 ILSMSMITSIFF-----ISSNQFFFQTLFL-SWKIIIMSLIFIWI-RGTFPRIRYDALMN 283
Query: 299 LLWTRVFAASIVGALLLALGVM 320
L W ++F + +++ +L ++
Sbjct: 284 LSW-KIFLPITIMSMIFSLSIL 304
>gi|5835086 NADH dehydrogenase subunit 1 [Asterina pectinifera]
>gi|1542806|dbj|BAA03879.1| (D16387) NADH-dehydrogenase
subunit 1 [Asterina pectinifera]
Length = 326
Score = 81.5 bits (198), Expect = 1e-14
Identities = 85/312 (27%), Positives = 147/312 (46%), Gaps = 26/312 (8%)
Query: 8 IGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETIIP 61
+ IL V + L + ++RK++ MQ R GP I LQP D KL+ KET+ P
Sbjct: 8 VNSILFIVPVLLAVALLTLVERKVLGYMQLRKGPNIVGPFGLLQPIADGFKLLIKETLKP 67
Query: 62 NTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVMS 120
+ A+ ++F +PVL L + L + P+ +S + + +++ I L +L+ + L+ S
Sbjct: 68 SNASPYLFFFSPVLFLGIALVLWSVIPVKYS-VVSVNLSLMLIIGLSSLSVYSLLGSGWS 126
Query: 121 SGSPYGRIGAAREVAMLISREPAM---MLGVFAVMWGISKLGVQKPFSLGSLYEHNLWEL 177
S S Y +GA R VA +S E ++ +LGV G F++ + W
Sbjct: 127 SNSNYSFLGAVRAVAQTVSYEISLGLILLGVVLFAGG---------FNVEVIESSQSWSW 177
Query: 178 GPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIK 237
+++ + F+S LA E F++ E E EI G VEY+G + +AE
Sbjct: 178 --LMFSCFPLFAIWFVSTLA-ETNRAPFDLTEGESEIVSGYNVEYAGGPFAMFFIAE-YA 233
Query: 238 EFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQAV 297
I +L+ +LF G + + VN+L+ + K +++L+ + R R + Q +
Sbjct: 234 NIIFINLLSVLLFLGGSSPMG-EFFPVNVLVVSLKAGVLVLLFLWV-RASYPRFRYDQLM 291
Query: 298 NLLWTRVFAASI 309
L W + S+
Sbjct: 292 YLTWKKYLPLSL 303
>sp|P23650|NU1M_ASTPE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|2133767|pir||S70596 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
starfish (Asterina pectinifera) mitochondrion
Length = 326
Score = 81.5 bits (198), Expect = 1e-14
Identities = 85/312 (27%), Positives = 147/312 (46%), Gaps = 26/312 (8%)
Query: 8 IGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETIIP 61
+ IL V + L + ++RK++ MQ R GP I LQP D KL+ KET+ P
Sbjct: 8 VNSILFIVPVLLAVALLTLVERKVLGYMQLRKGPNIVGPFGLLQPIADGFKLLIKETLKP 67
Query: 62 NTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVMS 120
+ A+ ++F +PVL L + L + P+ +S + + +++ I L +L+ + L+ S
Sbjct: 68 SNASPYLFFFSPVLFLGIALVLWSVIPVKYS-VVSVNLSLMLIIGLSSLSVYSLLGSGWS 126
Query: 121 SGSPYGRIGAAREVAMLISREPAM---MLGVFAVMWGISKLGVQKPFSLGSLYEHNLWEL 177
S S Y +GA R VA +S E ++ +LGV G F++ + W
Sbjct: 127 SNSNYSFLGAVRAVAQTVSYEISLGLILLGVVLFAGG---------FNVEVIESSQSWSW 177
Query: 178 GPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIK 237
+++ + F+S LA E F++ E E EI G VEY+G + +AE
Sbjct: 178 --LMFSCFPLFAIWFVSTLA-ETNRAPFDLTEGESEIVSGYNVEYAGGPFAMFFIAE-YA 233
Query: 238 EFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQAV 297
I +L+ +LF G + + VN+L+ + K +++L+ + R R + Q +
Sbjct: 234 NIIFINLLSVLLFLGGSSPMG-EFFPVNVLVVSLKAGVLVLLFLWV-RASYPRFRYDQLM 291
Query: 298 NLLWTRVFAASI 309
L W + S+
Sbjct: 292 YLTWKKYLPLSL 303
>gi|5835477 NADH dehydrogenase subunit 1 [Balanoglossus carnosus]
>gi|7431924|pir||T11127 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - acorn worm mitochondrion
>gi|3065687|gb|AAD11950.1| (AF051097) NADH dehydrogenase
subunit 1 [Balanoglossus carnosus]
Length = 322
Score = 81.5 bits (198), Expect = 1e-14
Identities = 92/322 (28%), Positives = 149/322 (45%), Gaps = 26/322 (8%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSK 56
+I+ALI ++ + V+ I+L +RK++ MQ R GP + LQP D +KL K
Sbjct: 7 IIHALILIVPVLLAVAFITLG----ERKIIGYMQLRKGPNVVGPYGLLQPIADGVKLFIK 62
Query: 57 ETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKG-DIIVFIYLLTLADFFL 114
E + P TAN +F P+L L IAL+ +TP+ F++ II+ + L +LA + +
Sbjct: 63 EPVKPTTANPQLFILCPILAL--AIALVLWTPIPLPFQFSSINLSIILILALSSLAVYSI 120
Query: 115 ILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNL 174
+ SS S Y IG+ R VA IS E ++ L V V+ + F+L ++ +
Sbjct: 121 LGSGWSSNSKYALIGSIRAVAQTISYEVSLGLIVLCVVI------LAGSFNLSTIVDSQ- 173
Query: 175 WELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAE 234
+ + I ++S LA E F++ E E E+ G VEY+G + LAE
Sbjct: 174 -DFSWFILTCTPIAFIWYVSTLA-ETNRTPFDLTEGESELVSGFNVEYAGGPFALFFLAE 231
Query: 235 SIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKIT 294
I +++ VLF G + + +I F+ LL R R +
Sbjct: 232 -YSNIIFMNVLSTVLFLGGGGPSILFSWAQTPIIALKATFLSLLFLWV--RASYPRFRYD 288
Query: 295 QAVNLLWTRVFAASIVGALLLA 316
Q ++L W ++ +LLA
Sbjct: 289 QLMHLAWKSYLPLALGLLILLA 310
>gi|11466175 NADH dehydrogenase subunit 1 [Naegleria gruberi]
>gi|10444210|gb|AAG17776.1|AF288092_1 (AF288092) NADH
dehydrogenase subunit 1 [Naegleria gruberi]
Length = 327
Score = 81.5 bits (198), Expect = 1e-14
Identities = 90/331 (27%), Positives = 149/331 (44%), Gaps = 39/331 (11%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSK 56
+I+ L+ L+ L +++ +L ++RK +A +QRR GP + LQP D LK K
Sbjct: 9 IIFFLLFLVFLLLTIALTTL----VERKAMASIQRRRGPNVVGFFGFLQPIADGLKAFIK 64
Query: 57 ETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLAD---F 112
E ++P+ +N F+F APV I L P G + + +YLLT++ +
Sbjct: 65 EIVLPSNSNLFIFLLAPVFTFFCSILLWVVIPFGENKVLIDFP--FSLLYLLTISSLSVY 122
Query: 113 FLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY-- 170
+I SS S Y +G R A +IS E + VF VM + + F+L +
Sbjct: 123 GIIFSGWSSNSKYAFLGGLRSAAQMISYEVCIGF-VFIVM-----IMMTDSFNLIDVVIN 176
Query: 171 EHNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+ +W + P+ + + F+S LA E F++PEAE E+ G VEYS +
Sbjct: 177 QEYVWFILPLF----PLWLIFFISALA-ETNRAPFDLPEAEAELVAGYNVEYSSIAFALF 231
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIP-----GIQGYIVNLLIHTAKVFIVLLVAKTIFR 285
LAE + +SL+ + + IP + + L T VFI + + R
Sbjct: 232 FLAEYGNIVLMSSLLSIFFWGGWLAIPLPLFNLLPDFFTFALKVTLHVFIFVWI-----R 286
Query: 286 TVTGRLKITQAVNLLWTRVFAASIVGALLLA 316
R + Q + L W + S++ L++
Sbjct: 287 AAFPRYRYDQLMKLGWKVLMPISVLFVYLIS 317
>sp|O78702|NU1M_MANTE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3399743|dbj|BAA32111.1|
(AB011219) NADH dehydrogenase subunit 1 [Manis
tetradactyla]
Length = 318
Score = 81.1 bits (197), Expect = 2e-14
Identities = 85/310 (27%), Positives = 139/310 (44%), Gaps = 29/310 (9%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
M +I L +I + V+ ++L +RK++ MQ R GP I LQP D +KL
Sbjct: 1 MSIINLLTTIIPVLLAVAFLTLA----ERKVLGYMQLRKGPNIVGPWGLLQPIADAVKLF 56
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE + P T++ M F AP+L L + + PM + PL ++ + + +LA +
Sbjct: 57 TKEPLRPLTSSIMMFIMAPILALALALTMWMPLPMPY-PLINMNLGVLFMLAMSSLAVYS 115
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--E 171
++ +S S Y IGA R VA IS E + + + +V L + F+L +L +
Sbjct: 116 ILWSGWASNSKYALIGANRAVAQTISYEVTLAIILLSV------LLMSGSFTLSTLIITQ 169
Query: 172 HNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
LW L P A + + F+S LA E F++ E E E+ G VEY+ +
Sbjct: 170 EKLWLLVP----AWPLAMMWFISTLA-ETNRAPFDLTEGESELVSGFNVEYAAGPFALFF 224
Query: 232 LAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRL 291
LAE + +L + Y N ++ ++L +A R R
Sbjct: 225 LAEYANIIMMNALSTTLFLGGFHNSYNPSLYTTNFIMKV----LILTMAFLWIRASYPRF 280
Query: 292 KITQAVNLLW 301
+ Q ++LLW
Sbjct: 281 RYDQLMHLLW 290
>gi|11610805 NADH dehydrogenase subunit 1 [Chalinolobus tuberculatus]
>gi|11545690|gb|AAG37926.1|AF321051_1 (AF321051) NADH
dehydrogenase subunit 1 [Chalinolobus tuberculatus]
Length = 318
Score = 81.1 bits (197), Expect = 2e-14
Identities = 87/325 (26%), Positives = 146/325 (44%), Gaps = 44/325 (13%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
M ++ ++ ++L A+++++ +RK++ MQ R GP + LQP D +KL
Sbjct: 4 MNLLTMIVPILLAVAFLTLL-------ERKMLGYMQLRKGPNVVGTYGLLQPIADAVKLF 56
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE + P T++ +F AP L LT + + PM PL ++ + L +LA +
Sbjct: 57 TKEPLQPLTSSPTLFIIAPTLALTLALTMWIPLPMP-HPLINMNLGVLFMLALSSLAVYA 115
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--E 171
++ +S S Y IGA R VA IS E + + + +S L + F+L +L +
Sbjct: 116 ILWSGWASNSKYALIGALRAVAQTISYEVTLAIII------LSTLLMNGSFTLSTLITTQ 169
Query: 172 HNLWELGP-----MVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRY 226
+W + P M+W F+S LA E F++ E E E+ G VEY+G
Sbjct: 170 EYIWLILPSWPLTMMW---------FISTLA-ETNRAPFDLTEGESELVSGFNVEYAGGP 219
Query: 227 LGIIKLAESIKEFIAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFR 285
+ LAE I + + +LF P + Y +N T K + I R
Sbjct: 220 FALFFLAE-YANIIMMNALTVILFLGAYNNPMFPEMYTINF---TTKALLFTTFFLWI-R 274
Query: 286 TVTGRLKITQAVNLLWTRVFAASIV 310
R + Q ++LLW ++V
Sbjct: 275 ASYPRFRYDQLMHLLWKNFLPLTLV 299
>gb|AAF63419.1|AF150756_1 (AF150756) NADH dehydrogenase subunit 1 [Pagurus longicarpus]
Length = 310
Score = 80.8 bits (196), Expect = 2e-14
Identities = 82/320 (25%), Positives = 147/320 (45%), Gaps = 40/320 (12%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLM 54
M ++ L+ +I + V+ ++LL +RK++ +Q R GP +LQPF D +KL
Sbjct: 2 MMLLNYLMLIICVLVGVAFVTLL----ERKILGYIQIRKGPNKVGYMGLLQPFADAVKLF 57
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGF-SPLFATKGDIIVFIYLLTLADF 112
KE +P+ +NF+ + +PV L I+LL + M + S + + I+ F+ L+L +
Sbjct: 58 LKEQTVPSMSNFLPYYLSPVFSL--FISLLVWMVMPYESGMVSFNMGILFFLCCLSLGVY 115
Query: 113 FLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEH 172
+ SS Y +G+ R A IS E ++ + + ++++ + + L +LY+
Sbjct: 116 STLSAGWSSNCKYSMLGSLRAAAQTISYEVSLAIILLSLIFLVGGFNL----GLFNLYQE 171
Query: 173 NLWELGPMVWVAGVILIYVFMSWLAS---EIEVGFFNIPEAEEEIAEGTLVEYSGRYLGI 229
N W ++W + + M WLAS E F+ E E E+ G EYS +
Sbjct: 172 NFW----LLW----LTFPLSMMWLASCLAETNRTPFDFAEGESELVSGFNTEYSSGGFAL 223
Query: 230 IKLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTG 289
I +AE + S++ A+ F + G +L+ + VFI + R
Sbjct: 224 IFMAE-YASILFMSMLFALFF--------LGGSPCSLMFYIKTVFIAFVFIWV--RGTLP 272
Query: 290 RLKITQAVNLLWTRVFAASI 309
RL+ + + L W S+
Sbjct: 273 RLRYDKLMYLAWKSFLPVSL 292
>gi|11465884 NADH dehydrogenase subunit 1 [Ochromonas danica]
>gi|10505217|gb|AAG18399.1|AF287134_24 (AF287134) NADH
dehydrogenase subunit 1 [Ochromonas danica]
Length = 325
Score = 80.8 bits (196), Expect = 2e-14
Identities = 85/339 (25%), Positives = 150/339 (44%), Gaps = 39/339 (11%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
M I LI ++L+ + I F+ +RK++ + RR GP + LQP D KL
Sbjct: 1 MYYILILIKILLIILPLLISVAYFTLAERKILGAIHRRRGPNVVGVYGLLQPLSDGFKLF 60
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLL---TLA 110
KET+IP++AN +F +P++ V++L+ + + F I +YL +L
Sbjct: 61 VKETVIPSSANKVIFIISPMIFF--VVSLMGWAIIPFDKYAYLADMNIGILYLFGVSSLG 118
Query: 111 DFFLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY 170
+ +++ SS S Y +GA R A ++S E ++ + +++ +Q S
Sbjct: 119 VYGVVMSGWSSNSKYAFLGALRSTAQMVSYEVSIGFIIISIVLCCGSFELQTIISC---- 174
Query: 171 EHNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+ N+W + P L +F + +E F++PEAE E+ G VEYS +
Sbjct: 175 QKNVWFVIPFF-----PLFLMFFTSALAETNRHPFDLPEAEAELVSGYNVEYSAMGFALF 229
Query: 231 KLAESIKEFIAASLVVAVLF--PWQVG------IPGIQGYIVNLLIHTAKVFIVLLVAKT 282
L E ++ S + +LF W +PG + V + F++L V
Sbjct: 230 SLGE-YSNMLSMSAINVILFFGGWLAPLSFFDILPGSFWFGVKI-----SFFVILYVWA- 282
Query: 283 IFRTVTGRLKITQAVNLLWTRVFAASIVGALLLALGVMI 321
R R + Q +N+ W +VF + L+ ++I
Sbjct: 283 --RAALPRYRYDQLMNIGW-KVFLPLSLSYLVFTFFILI 318
>gb|AAF72059.1|AF204057_14 (AF204057) NADH dehydrogenase subunit 1 [Scenedesmus obliquus]
Length = 324
Score = 80.4 bits (195), Expect = 3e-14
Identities = 86/336 (25%), Positives = 151/336 (44%), Gaps = 38/336 (11%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLMSK 56
++Y LI ++ + + + ++R+++ MQRR GP +LQPF D LKL+ K
Sbjct: 2 ILYLLIMILATVVPLLLAVAFLTLVERRVMGAMQRRQGPNAWGLFGVLQPFLDGLKLLLK 61
Query: 57 ETIIPNTANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLL---TLADF 112
E I+P++A+ +F AP+ LT + + +A+ + S A + + +Y+L +L +
Sbjct: 62 EPILPSSADQPLFLWAPI--LTFLTSQIAWAALPTSTAGAVRDLNLGTMYVLAVGSLGVY 119
Query: 113 FLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKL--GVQKPFSLGSLY 170
++L S S Y +G R VA +IS E M L V + L ++
Sbjct: 120 GILLRGWRSNSKYAFLGCCRSVAQMISYELPMGLIVLCACMIANSLNWSALVESQQNGIF 179
Query: 171 EHNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
LW L ++W+ + +E+ F++PEAE E+ G VEY+ +
Sbjct: 180 LLPLWPLA-LIWIICCL----------AELNRAPFDLPEAEAELVAGYNVEYASMGFALF 228
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIP-------GIQGYIVNLLIHTAKVFIVLLVAKTI 283
+ E + I + V +LF P + G L T+ VFI + V T+
Sbjct: 229 FIRE-YRSMIMMATVTRLLFLGGTAAPMNLFFLNWLPGSFWLRLKATSVVFIYIWVRATL 287
Query: 284 FRTVTGRLKITQAVNLLWTRVFAASIVGALLLALGV 319
R K + ++L W R+ ++ G + A+ V
Sbjct: 288 -----PRYKYSDLMDLGWKRLLPLTLAGFVANAVVV 318
>pir||B82822 NADH-ubiquinone oxidoreductase, NQO8 subunit XF0312 [imported] -
Xylella fastidiosa (strain 9a5c)
>gi|9105135|gb|AAF83123.1|AE003884_8 (AE003884)
NADH-ubiquinone oxidoreductase, NQO8 subunit [Xylella
fastidiosa]
Length = 330
Score = 80.4 bits (195), Expect = 3e-14
Identities = 92/327 (28%), Positives = 137/327 (41%), Gaps = 38/327 (11%)
Query: 19 IISLLFSGI-DRKLVARMQRRIGPP-----ILQPFYDFLKLMSKETIIPNTAN-FMFRAA 71
I+S+ F + +RKL+ M R GP + Q F D KL+ KE + P+ A+ +F A
Sbjct: 7 IVSVAFYVVWERKLIGWMHVRHGPMYVGMGLFQAFADVFKLLFKEVLYPSKAHKAIFVIA 66
Query: 72 PVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLT-LADFFLILGVMSSGSPYGRIGA 130
P+L L A A P + + ++++ +T L + +IL +S S Y +GA
Sbjct: 67 PLLTLAPSFAAWAVVPFDTKLVLSNANVGLLYLLAMTSLGVYGIILAGWASNSKYAFLGA 126
Query: 131 AREVAMLISREPAMMLGVFAVMWGISKLG----VQKPFSLGSLYEHNLWELGPMV---WV 183
R A ++S E AM + VM L V ++ L L P+ WV
Sbjct: 127 MRSAAQVVSYEIAMGFALVGVMIAAGSLNLSQIVMAQAGSSGFFDWFLIPLFPLFIVYWV 186
Query: 184 AGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEFIAAS 243
+GV +E F++ E E EI G +VEYSG + LAE I S
Sbjct: 187 SGV-----------AETNRSPFDVVEGESEIVAGHMVEYSGSVFALFFLAE-YANMILVS 234
Query: 244 LVVAVLF--PWQVGIPGIQGYIVNLLIHTA-------KVFIVLLVAKTI--FRTVTGRLK 292
++++ F W I G V+ LI +F VL A FR R +
Sbjct: 235 FLISIFFLGGWLSPIQGWVSGQVSPLIDWVWNGGWPWLLFKVLFFASAYIWFRASFPRYR 294
Query: 293 ITQAVNLLWTRVFAASIVGALLLALGV 319
Q + L W +IV + AL V
Sbjct: 295 YDQIMRLGWKVFIPLTIVWIAVTALMV 321
>emb|CAC14152.1| (AJ245399) putative NADH-ubiquinone oxidoreductase subunit
[Sinorhizobium meliloti]
Length = 328
Score = 80.0 bits (194), Expect = 4e-14
Identities = 91/340 (26%), Positives = 154/340 (44%), Gaps = 44/340 (12%)
Query: 1 MKVIYALIGLILLYAYVSIISLLF----SGIDRKLVARMQRRIGPP------ILQPFYDF 50
M++I AL ++ A V I LL + ++RK+ MQ+R+GP +LQP D
Sbjct: 1 MELIVALGVIVFKVALVIAILLLLPLPLTWLERKIAGHMQQRMGPMRVGWHGLLQPVADG 60
Query: 51 LKLMSKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTL 109
+KL++KE IP A+ F+F+ AP+L L + A P G S + +I ++I L +
Sbjct: 61 IKLLTKEDHIPAEADRFLFKLAPILALAPPFVVFAAIPFGES-VSVLGNEITLYISNLNV 119
Query: 110 ADFFL-----------ILGVMSSGSPYGRIGAAREVAMLISREPAM---MLGVFAVMWGI 155
A F+ I G ++ S Y +G+ R A +IS E M ++GV + +
Sbjct: 120 ALLFVFAVIGLEVYGVIFGGWAANSKYAVLGSLRTCAQMISYEIPMGFAVIGVVMLAQSM 179
Query: 156 SKLGVQKPFSLGSLYEHNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIA 215
S L + + + ++W + V I +VF +E + F++ EAE ++
Sbjct: 180 SLLDIVRA-------QTDVWNV-----VYQPIGFFVFFVAGLAEAQRIPFDLAEAEGDLG 227
Query: 216 EGTLVEYSGRYLGIIKLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKV-F 274
G EYSG + ++E + + + L V + F G G+ + LL KV F
Sbjct: 228 AGFHTEYSGIRFALFMVSEYVVMVLVSVLTVILFFG---GWNGVLIPLPPLLWFLLKVAF 284
Query: 275 IVLLVAKTIFRTVTGRLKITQAVNLLWTRVFAASIVGALL 314
V L FR R + Q + + W + S+ ++
Sbjct: 285 FVYLF--MWFRFTFPRYRYDQLMAIGWKVLLPLSLANIII 322
>gb|AAC28344.1| (AF065103) NADH dehydrogenase subunit 1 [Nyctalus noctula]
>gi|3372826|gb|AAC28346.1| (AF065105) NADH dehydrogenase
subunit 1 [Nyctalus noctula] >gi|3372829|gb|AAC28347.1|
(AF065106) NADH dehydrogenase subunit 1 [Nyctalus
noctula] >gi|3372832|gb|AAC28348.1| (AF065107) NADH
dehydrogenase subunit 1 [Nyctalus noctula]
Length = 301
Score = 79.6 bits (193), Expect = 5e-14
Identities = 86/322 (26%), Positives = 144/322 (44%), Gaps = 50/322 (15%)
Query: 7 LIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETII 60
+I ++L A+++++ +RK++ MQ R GP I LQP D +KL KE +
Sbjct: 4 IIPILLAVAFLTLL-------ERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFIKEPLQ 56
Query: 61 PNTANF-MFRAAPVLMLTTVIALLAYTPMGFS-PLFATKGDIIVFIYLLTLADFFLILGV 118
P T++ +F AP L LT +AL+ + P+ PL I+ + L +LA + ++
Sbjct: 57 PLTSSLTLFIIAPTLALT--LALMMWIPLPMPHPLINMNLSILFMLALSSLAVYAILWSG 114
Query: 119 MSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--EHNLWE 176
+S S Y IGA R VA IS E + + + ++ L + F+L +L + W
Sbjct: 115 WASNSKYALIGALRAVAQTISYEVTLAIIILSI------LLMNGSFTLSTLITTQEYTWL 168
Query: 177 LGP-----MVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
+ P M+W F+S +A E F++ E E E+ G VEY+G +
Sbjct: 169 IMPSWPLAMMW---------FISTIA-ETNRAPFDLTEGESELVSGFNVEYAGGPFALFF 218
Query: 232 LAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIF---RTVT 288
LAE + +L + + G ++TA + L+ T F R
Sbjct: 219 LAEYANIIMMNALTIILFL-------GAYNNSTFPEMYTANFMLKALLFTTFFLWIRASY 271
Query: 289 GRLKITQAVNLLWTRVFAASIV 310
R + Q ++LLW ++V
Sbjct: 272 PRFRYDQLMHLLWKNFLPLTLV 293
>sp|O80003|NUM1_NYCNO NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3372823|gb|AAC28345.1|
(AF065104) NADH dehydrogenase subunit 1 [Nyctalus
noctula] >gi|3372835|gb|AAC28349.1| (AF065108) NADH
dehydrogenase subunit 1 [Nyctalus noctula]
>gi|3372838|gb|AAC28350.1| (AF065109) NADH dehydrogenase
subunit 1 [Nyctalus noctula]
Length = 301
Score = 79.6 bits (193), Expect = 5e-14
Identities = 86/322 (26%), Positives = 144/322 (44%), Gaps = 50/322 (15%)
Query: 7 LIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETII 60
+I ++L A+++++ +RK++ MQ R GP I LQP D +KL KE +
Sbjct: 4 IIPILLAVAFLTLL-------ERKVLGYMQLRKGPNIVGPYGLLQPIADAVKLFIKEPLQ 56
Query: 61 PNTANF-MFRAAPVLMLTTVIALLAYTPMGFS-PLFATKGDIIVFIYLLTLADFFLILGV 118
P T++ +F AP L LT +AL+ + P+ PL I+ + L +LA + ++
Sbjct: 57 PLTSSLALFIIAPTLALT--LALMMWIPLPMPHPLINMNLSILFMLALSSLAVYAILWSG 114
Query: 119 MSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--EHNLWE 176
+S S Y IGA R VA IS E + + + ++ L + F+L +L + W
Sbjct: 115 WASNSKYALIGALRAVAQTISYEVTLAIIILSI------LLMNGSFTLSTLITTQEYTWL 168
Query: 177 LGP-----MVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
+ P M+W F+S +A E F++ E E E+ G VEY+G +
Sbjct: 169 IMPSWPLAMMW---------FISTIA-ETNRAPFDLTEGESELVSGFNVEYAGGPFALFF 218
Query: 232 LAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIF---RTVT 288
LAE + +L + + G ++TA + L+ T F R
Sbjct: 219 LAEYANIIMMNALTIILFL-------GAYNNSTFPEMYTANFMLKALLFTTFFLWIRASY 271
Query: 289 GRLKITQAVNLLWTRVFAASIV 310
R + Q ++LLW ++V
Sbjct: 272 PRFRYDQLMHLLWKNFLPLTLV 293
>gi|5835246 NADH dehydrogenase subunit 1 [Drosophila melanogaster]
>gi|1171800|sp|P18929|NU1M_DROME NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|552531|gb|AAA69715.1|
(M37275) NADH dehydrogenase 1 [Drosophila melanogaster]
>gi|1166542|gb|AAC47823.1| (U37541) NADH dehydrogenase
subunit 1 [Drosophila melanogaster]
Length = 312
Score = 79.2 bits (192), Expect = 6e-14
Identities = 84/331 (25%), Positives = 144/331 (43%), Gaps = 35/331 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLM 54
M+ I +LIG +LL V + + ++RK++ +Q R GP I QPF D +KL
Sbjct: 1 MEFILSLIGSLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLF 60
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE P +N++ + +P+ L + + P F L++ + F+ +L +
Sbjct: 61 TKEQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPF-FVKLYSFNLGGLFFLCCTSLGVYT 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+++ SS S Y +G R VA IS E ++ L + + ++ I + F Y+
Sbjct: 120 VMVAGWSSNSNYALLGGLRAVAQTISYEVSLALILLSFIFLIGSYNMIYFF----FYQVY 175
Query: 174 LWELGPMVWVAGVILIYVFMSWLA---SEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+W L +IL + + W++ +E F+ E E E+ G VEYS L +I
Sbjct: 176 MWFL--------IILFPMALVWVSISLAETNRNPFDFAEGESELVSGFNVEYSSGGLALI 227
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
+AE + L + P V NLLI+ FI + R R
Sbjct: 228 FMAEYASILFMSMLFCVIFLPCDV---------FNLLIYMKLTFISFVFIWV--RGTLPR 276
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ + + L W + F + + LL +G I
Sbjct: 277 FRYDKLMYLAW-KCFLSFSLNYLLFFIGFKI 306
>gi|5835514 NADH dehydrogenase subunit 1 [Branchiostoma lanceolatum]
>gi|5881426|ref|NP_007768.1| NADH dehydrogenase subunit
1 [Branchiostoma floridae]
>gi|8488994|sp|O21000|NU1M_BRALA NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431899|pir||B71390 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - common
lancelet mitochondrion >gi|2655392|gb|AAB88002.1|
(AF098298) NADH dehydrogenase subunit 1 [Branchiostoma
floridae] >gi|3292991|emb|CAA76247.1| (Y16474) NADH
dehydrogenase subunit 1 [Branchiostoma lanceolatum]
Length = 313
Score = 79.2 bits (192), Expect = 6e-14
Identities = 83/327 (25%), Positives = 149/327 (45%), Gaps = 43/327 (13%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSK 56
+I ++I + L + V + + +RK++ +Q R GP + LQP D +KL K
Sbjct: 1 MILSVIHIFLYFVPVLLAVAFLTLTERKVIGYVQLRKGPNVVGPYGLLQPIADGVKLFIK 60
Query: 57 ETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLT-LADFFL 114
E I P+++N +F AP+L L ++ALL + P+ F ++F+ ++ L+ + +
Sbjct: 61 EPIKPSSSNPSVFFFAPMLAL--ILALLLWMPVPLMDAFIELNFAVLFVLAISSLSVYSI 118
Query: 115 ILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGS--LYEH 172
+ SS S Y +GA R VA ++S E ++ L + +++ + + + FS +
Sbjct: 119 MASGWSSNSKYALLGALRAVAQMVSYEVSLGLIILSLICLVGGFNLAQFFSAQEEVMLML 178
Query: 173 NLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKL 232
+ W LG M +++ V +E F++ E E E+ G VEYSG + L
Sbjct: 179 SCWPLGIMWFISTV-----------AETNRSPFDLTEGESELVSGFNVEYSGGPFALFFL 227
Query: 233 AE----SIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVT 288
AE ++A L +A F +G+ G + L + FR
Sbjct: 228 AEYANILFMNVLSALLFLAAHFS-LLGVAVKVGLLAGLYLW--------------FRASY 272
Query: 289 GRLKITQAVNLLWTRVFAASIVGALLL 315
R + Q ++L W + F +G L+L
Sbjct: 273 PRFRYDQLMHLAW-KSFLPLSLGLLML 298
>gb|AAD09383.1| (AF069431) NADH dehydrogenase subunit 1 [Struthio camelus]
Length = 324
Score = 79.2 bits (192), Expect = 6e-14
Identities = 87/322 (27%), Positives = 149/322 (46%), Gaps = 54/322 (16%)
Query: 4 IYALIGLILLYAYVSIISLLF-SGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSK 56
I+ + + L YA +I++ F + ++RK+++ MQ R GP I LQP D +KL K
Sbjct: 5 IFTHLTMALSYAVPILIAVAFLTLVERKVLSYMQARKGPNIVGPFGLLQPVADGVKLFIK 64
Query: 57 ETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLI 115
E + P T++ +F A P+L L I + P+ FS G ++ + + +LA + ++
Sbjct: 65 EPVRPTTSSPILFIATPILALLLAITIWIPLPLPFSLTDLNLG-LLFLLSMSSLAVYSIL 123
Query: 116 LGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVM-----WGISKLG-VQKPFSLGSL 169
+S S Y IGA R VA IS E + + + +V+ + ++ L Q+P L
Sbjct: 124 WSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVIMLSGNYTLNTLATTQEPLYL--- 180
Query: 170 YEHNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGI 229
+ W L M+W ++S LA E F++ E E E+ G VEY+ +
Sbjct: 181 -IFSTWPLA-MMW---------YISTLA-ETNRAPFDLTEGESELVSGFNVEYAAGPFAL 228
Query: 230 IKLAESIKEFIAASLVVAVLF--PWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIF--- 284
LAE + + + A+LF P + +P +++F ++L KT+
Sbjct: 229 FFLAE-YANIMLMNTLTAILFLNPSSLNLP-------------SELFPLILATKTLLLSS 274
Query: 285 -----RTVTGRLKITQAVNLLW 301
R R + Q ++LLW
Sbjct: 275 GFLWVRASYPRFRYDQLMHLLW 296
>sp|Q9ZCF7|NUOH_RICPR NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
H) >gi|7431892|pir||F71640 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain H RP796 - Rickettsia
prowazekii >gi|3861323|emb|CAA15222.1| (AJ235273) NADH
DEHYDROGENASE I CHAIN H (nuoH) [Rickettsia prowazekii]
Length = 339
Score = 79.2 bits (192), Expect = 6e-14
Identities = 84/335 (25%), Positives = 146/335 (43%), Gaps = 43/335 (12%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
+KV+ I LIL AY++ +R+++ MQ R GP + LQP D +KL+
Sbjct: 17 LKVVAITIPLILCVAYLTYA-------ERRVIGLMQLRRGPNVVGPFGLLQPIADAVKLL 69
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLAD-- 111
KE IIP A+ +F AP++ T V++L+ + + FS + +Y+L ++
Sbjct: 70 FKEPIIPTDADKILFILAPII--TFVLSLIGWAVIPFSSGVVLADINVGVLYILAISSLS 127
Query: 112 -FFLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY 170
+ +I+ +S S Y +GA R A +IS E +M L + V+ L +
Sbjct: 128 VYGIIIAGWASNSKYAFLGAIRSSAQMISYEVSMGLVIITVLLTTGTLNLSGIIEAQKTL 187
Query: 171 EHNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
W + M+ ++ F+S LA + F ++PEAE E+ G VEYS +
Sbjct: 188 P---WWIDLMLLPMSIVF---FISVLAETNRLPF-DLPEAESELVAGYNVEYSSMGFALF 240
Query: 231 KLAESIKEFIAASLVVAV-----LFPWQVG----IPGIQGYIVNLLIHTAKVFIVLLVAK 281
L E + +++ + L P+ + IPG ++ + LL
Sbjct: 241 FLGEYANMILVSAMTTTLFLGGYLPPFNLSFLDCIPGFFWFVFKVGF--------LLFCF 292
Query: 282 TIFRTVTGRLKITQAVNLLWTRVFAASIVGALLLA 316
R R + Q + L W ++ G +L++
Sbjct: 293 LWIRATLPRYRYDQLMRLGWKVFLPFTLFGVVLVS 327
>gb|AAF61229.1|AF234897_1 (AF234897) NADH dehydrogenase I [Haemulon plumieri]
Length = 324
Score = 79.2 bits (192), Expect = 6e-14
Identities = 90/335 (26%), Positives = 151/335 (44%), Gaps = 40/335 (11%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSK 56
VI I + L V + + ++RK++ MQ R GP + LQP D +KL K
Sbjct: 5 VIIHTINTLTLIVPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIK 64
Query: 57 ETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLI 115
E + P+T++ +F AP+L L+ + L A P+ + + G I+FI L+ + I
Sbjct: 65 EPVRPSTSSPLLFLLAPMLALSLALTLWAPMPLPYPMVDLNLG--ILFILALSSLTVYSI 122
Query: 116 LGV-MSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNL 174
LG +S S Y IGA R VA IS E ++ L + + I +Q ++ + ++
Sbjct: 123 LGSGWASNSKYALIGALRAVAQTISYEVSLGLILLGTIIFIGGFTLQT----FNVAQESV 178
Query: 175 WELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAE 234
W + P +A + + F +E F++ E E E+ G VEY+G + LAE
Sbjct: 179 WLILPAWPLAAMWYVSTF-----AETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAE 233
Query: 235 ----SIKEFIAASLVV----AVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRT 286
+ ++A+L + A L+P I NL+ A + I L + +
Sbjct: 234 YANILLMNTLSANLFMGASHAPLYPELTAI--------NLMTKAALLSIAFLWVRASY-- 283
Query: 287 VTGRLKITQAVNLLWTRVFAASIVGALLLALGVMI 321
R + Q ++L+W + F + L+ L V I
Sbjct: 284 --PRFRYDQLMHLIW-KAFLPLTLALLIWHLAVPI 315
>emb|CAA70708.1| (Y09524) NADH dehydrogenase subunit 1 [Branchiostoma lanceolatum]
Length = 313
Score = 78.8 bits (191), Expect = 8e-14
Identities = 69/258 (26%), Positives = 127/258 (48%), Gaps = 24/258 (9%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSK 56
+I ++I + L + V + + +RK++ +Q R GP + LQP D +KL K
Sbjct: 1 MILSVIHIFLYFVPVLLAVAFLTLTERKVIGYVQLRKGPNVVGPYGLLQPIADGVKLFIK 60
Query: 57 ETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLL-TLADFFL 114
E I P+++N +F AP+L L ++ALL + P+ F ++F+ + +L+ + +
Sbjct: 61 EPIKPSSSNPSVFFFAPMLAL--ILALLLWMPVPLMDAFIELNFAVLFVLAIPSLSVYSI 118
Query: 115 ILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGS--LYEH 172
+ SS S Y +GA R VA ++S E ++ L + +++ + + + FS +
Sbjct: 119 MASGWSSNSKYALLGALRAVAQMVSYEVSLGLIILSLICLVGGFNLAQFFSAQEEVMLML 178
Query: 173 NLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKL 232
+ W LG M +++ V +E F++ E E E+ G VEYSG + L
Sbjct: 179 SCWPLGIMWFISTV-----------AETNRSPFDLTEGESELVSGFNVEYSGGPFALFFL 227
Query: 233 AESIKEFIAASLVVAVLF 250
AE + +++ A+LF
Sbjct: 228 AE-YANILFMNVLSALLF 244
>gb|AAG23680.1|AF288091_25 (AF288091) NADH dehydrogenase subunit 1 [Thraustochytrium aureum]
Length = 321
Score = 78.8 bits (191), Expect = 8e-14
Identities = 85/337 (25%), Positives = 153/337 (45%), Gaps = 44/337 (13%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLM 54
+K ++ L++ A+ F+ +RK++ +QRR GP + Q D LKL
Sbjct: 6 LKTFSIILPLLIAIAF-------FTVAERKIIGSIQRRRGPNTVGLFGVTQALADGLKLF 58
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLT-LADF 112
KE+I+P+++N +F AP++ + A P+ + +++ I+F+ ++ L +
Sbjct: 59 LKESILPSSSNKLLFMFAPIITFFLSLIGWAIFPINENSVYSDLNLGILFLLAISSLGVY 118
Query: 113 FLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEH 172
+I+ SS S Y +GA R A ++S E ++ + +V+ L + + + +
Sbjct: 119 GIIIAGWSSNSKYAFLGALRSAAQMVSYEISIGFILISVIISCGSLNLIRIV----IAQE 174
Query: 173 NLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKL 232
+W P+ + I F++ LA E F++PEAE E+ G VEYSG + L
Sbjct: 175 KIWFFIPLF----PMFILFFIACLA-ETNRHPFDLPEAEAELVSGYNVEYSGIGFALFFL 229
Query: 233 AE-----SIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIF--- 284
E I F + + LFP+ +I +I + K F + T+F
Sbjct: 230 GEYGNIILISAFCSLLFLGGWLFPY-------FNFISGSIIFSIKTFFFI----TLFIWA 278
Query: 285 RTVTGRLKITQAVNLLWTRVFAASIVGALLLALGVMI 321
R R + Q + L W +VF + +L GV+I
Sbjct: 279 RAAFPRYRYDQLMRLGW-KVFLPLSMAWVLFTSGVLI 314
>sp|O78701|NU1M_BRAVA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3399741|dbj|BAA32110.1|
(AB011218) NADH dehydrogenase subunit 1 [Bradypus
variegatus]
Length = 318
Score = 78.4 bits (190), Expect = 1e-13
Identities = 82/308 (26%), Positives = 142/308 (45%), Gaps = 32/308 (10%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLMSK 56
++ ++ ++L A++++ +RK++ MQ R GP +LQP D +KL +K
Sbjct: 6 ILCLMMPILLAVAFLTLT-------ERKILGHMQLRKGPNTVGPHGLLQPVADAVKLFTK 58
Query: 57 ETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLI 115
E + P T++ MF AP L T ++L A PM PL I+ + + +LA ++
Sbjct: 59 EPLHPLTSSKLMFIIAPTLAFTLALSLWAPLPMPH-PLINLNLSILFILAMSSLAVHSIL 117
Query: 116 LGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSL--YEHN 173
+S S Y IGA R VA IS E + + + ++M + F+L +L +
Sbjct: 118 WSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIML------INGSFTLSTLTITQEQ 171
Query: 174 LWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLA 233
+W + P W ++ F+S LA E F++ E E E+ G VEY+ + +A
Sbjct: 172 MWLILP-TWPLAMMW---FISTLA-ETNRTPFDLSEGESELVSGFNVEYAAGPFALFFMA 226
Query: 234 ESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKI 293
E + +L + F + + +NL T K I++ + I R R +
Sbjct: 227 EYTNIILMNALTATLFFGAFHNPLFPELHTINL---TTKTLILVFLFLWI-RASYPRFRY 282
Query: 294 TQAVNLLW 301
Q ++LLW
Sbjct: 283 DQLMHLLW 290
>sp|O78713|NU1M_ZAGBR NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3401931|dbj|BAA32122.1|
(AB011230) NADH dehydrogenase subunit 1 [Zaglossus
bruijni]
Length = 303
Score = 78.0 bits (189), Expect = 1e-13
Identities = 81/299 (27%), Positives = 134/299 (44%), Gaps = 31/299 (10%)
Query: 27 IDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETIIPNTAN-FMFRAAPVLMLTTV 79
I+RK++ MQ R GP I LQP D +KL KE + P T++ +MF AP+L L+
Sbjct: 11 IERKILGYMQFRKGPNIVGPHGLLQPIADAVKLFIKEPLRPMTSSIYMFILAPILALSLA 70
Query: 80 IALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVMSSGSPYGRIGAAREVAMLIS 139
+ + PM PL ++ + + L+ + ++ +S S Y GA R VA IS
Sbjct: 71 LTIWVPLPMPL-PLIDLNLGLLFVLSVSGLSVYSILWSGWASNSKYALTGALRAVAQTIS 129
Query: 140 REPAMMLGVFAVMWGISKLGVQKPFSLGSLY--EHNLWELGPMVWVAGVILIYVFMSWLA 197
E + + + ++M + F+L +L + +W + P W +++ F+S LA
Sbjct: 130 YEVTLAIILLSIML------INGSFTLTTLNLTQEFMWLVVP-TWP---LMLTRFISTLA 179
Query: 198 SEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEFIAASLVVAVLFPWQVGIP 257
E F++ E E E+ G VEY+ + LAE I +L V + F
Sbjct: 180 -ETNRAPFDLTEGESELVSGFNVEYAAGPFAMFFLAEYANIIIMNALTVILFF------- 231
Query: 258 GIQGYIVNLLIHTAKVFIVLLVAKTIF---RTVTGRLKITQAVNLLWTRVFAASIVGAL 313
G I + T I ++ ++F R R + Q ++LLW ++V L
Sbjct: 232 GAYHLIFLPELSTINFMIKTMMLTSLFLWIRASYPRFRYDQLMHLLWKNFLPITLVTCL 290
>gb|AAF61225.1|AF234893_1 (AF234893) NADH dehydrogenase I [Haemulon plumieri]
>gi|7341271|gb|AAF61227.1|AF234895_1 (AF234895) NADH
dehydrogenase I [Haemulon plumieri]
>gi|7341277|gb|AAF61230.1|AF234898_1 (AF234898) NADH
dehydrogenase I [Haemulon plumieri]
Length = 324
Score = 78.0 bits (189), Expect = 1e-13
Identities = 90/331 (27%), Positives = 148/331 (44%), Gaps = 32/331 (9%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSK 56
VI I + L V + + ++RK++ MQ R GP + LQP D +KL K
Sbjct: 5 VIIHTINTLTLIVPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIK 64
Query: 57 ETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLI 115
E + P+T++ +F AP+L L+ + L A P+ + + G I+FI L+ + I
Sbjct: 65 EPVRPSTSSPLLFLLAPMLALSLALTLWAPMPLPYPMVDLNLG--ILFILALSSLTVYSI 122
Query: 116 LGV-MSSGSPYGRIGAAREVAMLISREPAM---MLGVFAVMWGISKLGVQKPFSLGSLYE 171
LG +S S Y IGA R VA IS E ++ +LG G + ++ +
Sbjct: 123 LGSGWASNSKYALIGALRAVAQTISYEVSLGLILLGTIIFTGGFT-------LQTFNVAQ 175
Query: 172 HNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
++W + P A + ++S LA E F++ E E E+ G VEY+G +
Sbjct: 176 ESVWLILP----AWPLAAMWYVSTLA-ETNRAPFDLTEGESELVSGFNVEYAGGPFALFF 230
Query: 232 LAESIKEFIAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
LAE + + + A LF P + +NL+ A + I L + + R
Sbjct: 231 LAE-YANILLMNTLSATLFMGASHAPLYPELTAINLMTKAALLSIAFLWVRASY----PR 285
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ Q ++L+W + F + L+ L V I
Sbjct: 286 FRYDQLMHLIW-KAFLPLTLALLIWHLAVPI 315
>sp|P08774|NU1M_NEUCR NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|83809|pir||A23431 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
Neurospora crassa mitochondrion
>gi|763159|emb|CAA27029.1| (X03280) URF1 [Neurospora
crassa]
Length = 371
Score = 77.6 bits (188), Expect = 2e-13
Identities = 70/262 (26%), Positives = 119/262 (44%), Gaps = 33/262 (12%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGP------PILQPFYDFLKLM 54
++V+ L+ +L AYV++ +RK +A MQRR+GP +LQ F D LKL+
Sbjct: 11 LEVLLVLVPSLLAVAYVTVA-------ERKTMASMQRRLGPNAVGYLGLLQAFADALKLL 63
Query: 55 SKETIIPNTANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLL---TLA 110
KE + AN +F PV +T + +LL Y + + P + + +Y+L +LA
Sbjct: 64 LKEYVALTQANMTLFFLGPV--ITLIFSLLGYAVIPYGPSLVIQDVNLGILYMLAVSSLA 121
Query: 111 DFFLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAV--MWGISKLGVQKPFSLGS 168
+ ++L S+ S Y +G+ R A LIS E + + V + G LGV
Sbjct: 122 TYGILLAGWSANSKYAFLGSLRSAAQLISYELVLSSAILLVIMLTGSFNLGVNTESQRAV 181
Query: 169 LYEHNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLG 228
L+ L + + +F +E F++ EAE E+ G + E++
Sbjct: 182 LFVLPL-----------LPIFIIFFIGSIAETNRAPFDLAEAESELVSGFMTEHAAVVFV 230
Query: 229 IIKLAESIKEFIAASLVVAVLF 250
LAE + ++ ++LF
Sbjct: 231 FFFLAE-YGSIVLMCILTSILF 251
>pir||S01191 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - fruit fly
(Drosophila melanogaster) mitochondrion
Length = 312
Score = 77.6 bits (188), Expect = 2e-13
Identities = 83/331 (25%), Positives = 143/331 (43%), Gaps = 35/331 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLM 54
M+ I +LIG +LL V + + ++RK++ +Q R GP I QPF D +KL
Sbjct: 1 MEFILSLIGSLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLF 60
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE P +N++ + +P+ L + + P F L++ + F+ +L +
Sbjct: 61 TKEQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPF-FVKLYSFNLGGLFFLCCTSLGVYT 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+++ SS S Y +G R VA IS E ++ L + + ++ I + F Y+
Sbjct: 120 VMVAGWSSNSNYALLGGLRAVAQTISYEVSLALILLSFIFLIGSYNMIYFF----FYQVY 175
Query: 174 LWELGPMVWVAGVILIYVFMSWLA---SEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+W L +IL + + W++ +E F+ E E E+ G VEYS +I
Sbjct: 176 MWFL--------IILFPMALVWVSISLAETNRNPFDFAEGESELVSGFNVEYSSGGFALI 227
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
+AE + L + P V NLLI+ FI + R R
Sbjct: 228 FMAEYASILFMSMLFCVIFLPCDV---------FNLLIYMKLTFISFVFIWV--RGTLPR 276
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ + + L W + F + + LL +G I
Sbjct: 277 FRYDKLMYLAW-KCFLSFSLNYLLFFIGFKI 306
>gb|AAA65487.1| (M57527) NDI [Rana catesbeiana]
Length = 324
Score = 77.6 bits (188), Expect = 2e-13
Identities = 71/250 (28%), Positives = 116/250 (46%), Gaps = 35/250 (14%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
MK+++ + +L A + + + I+RK++ MQ R GP + LQP D +KL
Sbjct: 1 MKLLFMYLLPLLYIAPILLAVAFLTLIERKILGYMQHRKGPNVVGPFGLLQPIADGVKLF 60
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
KE I P+T++ +F AP L L +A++ +TP ++ I+FI ++ +
Sbjct: 61 IKEPIRPSTSSQLLFILAPTLAL--ALAMIMWTPFPLPIPYSNLNLSILFILAISSLTVY 118
Query: 114 LILGV-MSSGSPYGRIGAAREVAMLISREPAMMLGVFAVM-----WGISKLGVQKPFSLG 167
ILG +S S Y IGA R VA IS E + L + + + +S + + F+
Sbjct: 119 TILGSGWASNSKYALIGALRAVAQTISYEVTLALIILCSVLLAGGFTLSAFAISQEFT-- 176
Query: 168 SLYEHNLWELGPMVWVAGVILIYVFMSWLAS---EIEVGFFNIPEAEEEIAEGTLVEYSG 224
W + P+ W +F+ W S E F++ E E E+ G VEY+G
Sbjct: 177 -------WFILPL-WP-------MFLMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAG 221
Query: 225 RYLGIIKLAE 234
+ LAE
Sbjct: 222 GPFALFFLAE 231
>sp|P16672|NU1M_RANCA NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1
Length = 325
Score = 77.6 bits (188), Expect = 2e-13
Identities = 71/250 (28%), Positives = 116/250 (46%), Gaps = 35/250 (14%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
MK+++ + +L A + + + I+RK++ MQ R GP + LQP D +KL
Sbjct: 1 MKLLFMYLLPLLYIAPILLAVAFLTLIERKILGYMQHRKGPNVVGPFGLLQPIADGVKLF 60
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
KE I P+T++ +F AP L L +A++ +TP ++ I+FI ++ +
Sbjct: 61 IKEPIRPSTSSQLLFILAPTLAL--ALAMIMWTPFPLPIPYSNLNLSILFILAISSLTVY 118
Query: 114 LILGV-MSSGSPYGRIGAAREVAMLISREPAMMLGVFAVM-----WGISKLGVQKPFSLG 167
ILG +S S Y IGA R VA IS E + L + + + +S + + F+
Sbjct: 119 TILGSGWASNSKYALIGALRAVAQTISYEVTLALIILCSVLLAGGFTLSAFAISQEFT-- 176
Query: 168 SLYEHNLWELGPMVWVAGVILIYVFMSWLAS---EIEVGFFNIPEAEEEIAEGTLVEYSG 224
W + P+ W +F+ W S E F++ E E E+ G VEY+G
Sbjct: 177 -------WFILPL-WP-------MFLMWFVSTLAETNRAPFDLTEGESELVSGFNVEYAG 221
Query: 225 RYLGIIKLAE 234
+ LAE
Sbjct: 222 GPFALFFLAE 231
>pir||B81252 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 Cj1572c
[similarity] - Campylobacter jejuni (strain NCTC 11168)
>gi|6968989|emb|CAB73560.1| (AL139079) NADH
dehydrogenase I chain H [Campylobacter jejuni]
Length = 332
Score = 77.6 bits (188), Expect = 2e-13
Identities = 83/334 (24%), Positives = 152/334 (44%), Gaps = 32/334 (9%)
Query: 7 LIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPILQPF------YDFLKLMSKETII 60
LI I++ A + ++ L + +RK++A QRRIGP ++ PF D +KL +KE II
Sbjct: 12 LIKCIIIIAIFASLAGLATYAERKVLAYFQRRIGPDMVGPFGLIQLVADMIKLFTKEDII 71
Query: 61 P-NTANFMFRAAPVLMLTTVIALLAYTPM---------GFSPLFATKGDIIVFIYLLT-L 109
P N+ F+F AP++ LA PM P+ A ++F+ + L
Sbjct: 72 PSNSQKFIFAIAPLISAICAFVSLAAIPMLPEFTLFGRVIQPIVADINVALLFVIGTSGL 131
Query: 110 ADFFLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSL 169
+ + LG ++S + + +GAAR + +IS E L + A++ + FSL +
Sbjct: 132 CFYAVFLGGLASNNKWSILGAARGLVSIISYESVGALALIAIIMLVGS------FSLVDI 185
Query: 170 YEHNLWELGPMVWV--AGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYL 227
+N G W+ + +F+ L E + E + EI G EYSG
Sbjct: 186 --NNYQSDGFFSWLIFKQPLAFVLFIIALFIETNRTPLCLTENDAEIVAGYGTEYSGLRW 243
Query: 228 GIIKLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTV 287
G+ + E IA +++V +LF I + +++ ++ +F A+ F
Sbjct: 244 GMFFIGE-YTSMIAGAILVTLLFLGGFNSFWIIPGWIMMIVKSSFIFFWYFWARAAF--- 299
Query: 288 TGRLKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+L+ Q + + + + +++ L+ AL V++
Sbjct: 300 -PQLRPDQVMKMCYLILIPLAVLNLLITALTVLL 332
>gi|5834898 NADH dehydrogenase subunit 1 [Strongylocentrotus purpuratus]
>gi|128654|sp|P15548|NU1M_STRPU NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|85385|pir||S01499 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - sea
urchin (Strongylocentrotus purpuratus) mitochondrion
>gi|13665|emb|CAA31151.1| (X12631) NADH dehydrogenase
(ND1) subunit 1 [Strongylocentrotus purpuratus]
Length = 322
Score = 77.3 bits (187), Expect = 2e-13
Identities = 88/339 (25%), Positives = 154/339 (44%), Gaps = 53/339 (15%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
+++I LI ++L A+++++ +RK++ MQ R GP + LQPF D +K+
Sbjct: 8 LELISFLIPILLSVAFLTLV-------ERKVLGYMQFRNGPNVVGPFGLLQPFADGMKVF 60
Query: 55 SKETIIP-NTANFMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
KE + P N++ ++F +P+L L + L + P+ +P + +++ + L +L+ +
Sbjct: 61 IKEELKPVNSSPYLFFFSPLLFLALALLLWNFMPV-HTPTLDLQLSLLLVLGLSSLSVYA 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
++ +S S Y +GA R VA IS E ++ L + +++ S S Y N
Sbjct: 120 ILGSGWASNSKYSLLGAIRAVAQTISYEISLALILLSLIIFSS--------SFNLTYIMN 171
Query: 174 LWELGPMVW--VAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
E W ++ + L Y++ +E F++ E E EI G VEY+G +
Sbjct: 172 TQEFS---WFSLSCLPLFYIWFVSTLAETNRAPFDLTEGESEIVSGYNVEYAGGPFVLFF 228
Query: 232 LAE----------SIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAK 281
+AE S+ F+ + LFP + I GI+ T +F VL V
Sbjct: 229 IAEYANIILMNYFSVVLFLGGPSPLNNLFPISIIIVGIK---------TTFLFSVLWV-- 277
Query: 282 TIFRTVTGRLKITQAVNLLWTRVFAASIVGALLLALGVM 320
R R + Q + L W SI GAL L ++
Sbjct: 278 ---RAAYPRFRYDQLMFLTWKSYLPLSI-GALCAILALV 312
>sp|O78704|NU1M_MACEU NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1 >gi|3399747|dbj|BAA32113.1|
(AB011221) NADH dehydrogenase subunit 1 [Macropus
eugenii]
Length = 318
Score = 77.3 bits (187), Expect = 2e-13
Identities = 76/259 (29%), Positives = 126/259 (48%), Gaps = 26/259 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
M VI L+ +I + V+ ++L ++RK + MQ R GP I LQP D +KL
Sbjct: 1 MFVINLLLYIIPILLAVAFLTL----VERKDLGYMQFRKGPNIVGPYGLLQPVADGIKLF 56
Query: 55 SKETIIPNTANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE + P T++F MF AP+L LT + PM + + G ++ + L L+ +
Sbjct: 57 TKEPLRPLTSSFNMFIIAPILALTLARTIWTPLPMPHTLIDLNLG-LLFILSLSGLSVYS 115
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--E 171
++ +S S Y IGA R VA IS E + + + ++M + F+L +L +
Sbjct: 116 ILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIML------INGSFTLKNLLITQ 169
Query: 172 HNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
N+W ++ + + ++S LA E F++ E E E+ G VEY+ +
Sbjct: 170 ENMW----LIVSTWPLAMMWYISTLA-ETNRAPFDLTEGESELVSGFNVEYAAGPFAMFF 224
Query: 232 LAESIKEFIAASLVVAVLF 250
LAE IA + + A+LF
Sbjct: 225 LAE-YANIIAMNAMTAILF 242
>gi|11465930 NADH dehydrogenase subunit 1 [Pedinomonas minor]
>gi|7431930|pir||T11320 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - Pedinomonas minor mitochondrion
>gi|4378774|gb|AAD19672.1| (AF116775) NADH dehydrogenase
subunit 1 [Pedinomonas minor]
Length = 310
Score = 77.3 bits (187), Expect = 2e-13
Identities = 81/333 (24%), Positives = 149/333 (44%), Gaps = 45/333 (13%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSG-----IDRKLVARMQRRIGPPI------LQPFYD 49
MK I+ + I L + ++S+L S I+RK++A +QRR GP LQ D
Sbjct: 1 MKCIFFIRMFIFLKGLILLVSVLLSVAFLVLIERKVIAYIQRRRGPVFVGFWGALQSIAD 60
Query: 50 FLKLMSKETI-IPNTANFMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLL- 107
LKL+ K + + ++ A+P + + + P+GF DI +F L
Sbjct: 61 GLKLILKTNLSVFGIEKSIYYASPFISFFISLLSWVFIPLGF---LLQDSDISLFFILAL 117
Query: 108 -TLADFFLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSL 166
++ + ++L +SS S + +G R A +IS E ++ + +F+++ + L + K S
Sbjct: 118 NSIGVYGILLAGLSSSSRWAFLGGLRSAAQIISYELSLNICIFSIILCVGGLSIIKVVS- 176
Query: 167 GSLYEHNLWELGPMVWVAGVILIYVFMSWLAS--EIEVGFFNIPEAEEEIAEGTLVEYSG 224
++ N+ + P+ L ++ +S++ S EI F++PEAE E+ G V+Y
Sbjct: 177 ---FQENILLVFPL-------LPFILISFIISLAEINRAPFDLPEAEAELVAGYNVDYGA 226
Query: 225 RYLGIIKLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIF 284
L E + S ++A LF G + +LI +F+++ V
Sbjct: 227 INFTFFFLGE-YTHIVLISFIMAKLF---------FGSLNTILIPIFFIFLIIQV----- 271
Query: 285 RTVTGRLKITQAVNLLWTRVFAASIVGALLLAL 317
R R + Q + L W + S +L++
Sbjct: 272 RAALPRYRYDQLMKLGWKELLLISFSCMFILSM 304
>gb|AAF61226.1|AF234894_1 (AF234894) NADH dehydrogenase I [Haemulon plumieri]
Length = 324
Score = 77.3 bits (187), Expect = 2e-13
Identities = 90/331 (27%), Positives = 147/331 (44%), Gaps = 32/331 (9%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSK 56
VI I + L V + + ++RK++ MQ R GP + LQP D +KL K
Sbjct: 5 VIIHTINTLTLIVPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIK 64
Query: 57 ETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLI 115
E + P+T++ +F AP+L L+ + L A P + + G I+FI L+ + I
Sbjct: 65 EPVRPSTSSPLLFLLAPMLALSLALTLWAPMPFPYPMVDLNLG--ILFILALSSLTVYSI 122
Query: 116 LGV-MSSGSPYGRIGAAREVAMLISREPAM---MLGVFAVMWGISKLGVQKPFSLGSLYE 171
LG +S S Y IGA R VA IS E ++ +LG G + ++ +
Sbjct: 123 LGSGWASNSKYALIGALRAVAQTISYEVSLGLILLGTIIFTGGFT-------LQTFNVAQ 175
Query: 172 HNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
++W + P A + ++S LA E F++ E E E+ G VEY+G +
Sbjct: 176 ESVWLILP----AWPLAAMWYVSTLA-ETNRAPFDLTEGESELVSGFNVEYAGGPFALFF 230
Query: 232 LAESIKEFIAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
LAE + + + A LF P + +NL+ A + I L + + R
Sbjct: 231 LAE-YANILLMNTLSATLFMGASHAPLYPELTAINLMTKAALLSIAFLWVRASY----PR 285
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ Q ++L+W + F + L+ L V I
Sbjct: 286 FRYDQLMHLIW-KAFLPLTLALLIWHLAVPI 315
>gb|AAF61231.1|AF234899_1 (AF234899) NADH dehydrogenase I [Haemulon plumieri]
Length = 324
Score = 77.3 bits (187), Expect = 2e-13
Identities = 89/328 (27%), Positives = 147/328 (44%), Gaps = 26/328 (7%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSK 56
VI I + L V + + ++RK++ MQ R GP + LQP D +KL K
Sbjct: 5 VIVHTINTLTLIVPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIK 64
Query: 57 ETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLI 115
E + P+T++ +F A +L L+ + L A P+ + G I+FI L+ + I
Sbjct: 65 EPVRPSTSSTLLFLLATMLTLSLALTLWAPMPLSMPMMDLNLG--ILFILALSNLTVYSI 122
Query: 116 LGV-MSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNL 174
LG +S S Y IGA R VA + S E ++ L +F + +Q ++ + ++
Sbjct: 123 LGSGWASNSKYAFIGAMRAVAQMFSVEVSLGLILFGAIIFTGAFTLQTL----NVAQESV 178
Query: 175 WELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAE 234
W + P +A + + F +E F++ E E E+ G VEY+G + LAE
Sbjct: 179 WLILPAWPLAAMWYVSTF-----AETNRAPFDLTEGESELVSGFNVEYAGGPFALFFLAE 233
Query: 235 SIKEFIAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKI 293
+ + + A LF P + +NL+I A +L VA R R +
Sbjct: 234 -YANILLMNTLSATLFMGASHAPLYPELTAINLMIKAA----LLSVAFLWVRASYPRFRY 288
Query: 294 TQAVNLLWTRVFAASIVGALLLALGVMI 321
Q ++L+W + F + L+ L V I
Sbjct: 289 DQLMHLIW-KAFLPLTLALLVWHLAVPI 315
>gi|6691423 NADH dehydrogenase subunit 1 [Lampetra fluviatilis]
>gi|3122440|sp|O21069|NU1M_LAMFL NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|7431967|pir||T13811 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - river
lamprey mitochondrion >gi|2340017|emb|CAA70719.1|
(Y09528) NADH dehydrogenase subunit 1 [Lampetra
fluviatilis] >gi|6523330|emb|CAB62214.1| (Y18683) NADH
dehydrogenase subunit 1 [Lampetra fluviatilis]
Length = 321
Score = 76.9 bits (186), Expect = 3e-13
Identities = 89/336 (26%), Positives = 153/336 (45%), Gaps = 40/336 (11%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSK 56
++ L ++L V + + ++RK + MQ R GP + LQP D +KL K
Sbjct: 1 MLVMLTSTLILVLMVLLAVAFLTMVERKTLGYMQLRKGPNVVGFMGLLQPIADGVKLFLK 60
Query: 57 ETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLI 115
E + P A+ +F AAP++ LT ++L + PM S + ++V + + +L+ + +
Sbjct: 61 EPVWPTAASPALFIAAPIMALTLALSLWMFIPMPQS-ISTINLTLLVILAISSLSVYASL 119
Query: 116 LGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY---EH 172
+S S Y IGA R VA IS E + LG+ + I G FSL + EH
Sbjct: 120 GSGWASNSKYALIGALRAVAQTISYE--VSLGLILLCLIILTGG----FSLQAFIYTQEH 173
Query: 173 -----NLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYL 227
+ W L M W F+S LA E F++ E E E+ G VEY+G
Sbjct: 174 TWFLLSSWPLAAM-W---------FVSTLA-ETNRTPFDLTEGESELVSGFNVEYAGGPF 222
Query: 228 GIIKLAESIKEFIAASLVVAVLFPWQVGIPGIQGY-IVNLLIHTAKVFIVLLVAKTIFRT 286
+ LAE + + + A++F +G + I+N+++ + I+ L + +
Sbjct: 223 ALFFLAE-YSNILFMNTLTAIMFLGPLGPNNLNILPIINVMMKATPLIILFLWIRASY-- 279
Query: 287 VTGRLKITQAVNLLWTRVFAASI-VGALLLALGVMI 321
R + Q ++L+W ++ + L L+L V +
Sbjct: 280 --PRFRYDQLMHLMWKNFLPLNLALFTLQLSLAVSL 313
>gi|5835569 NADH dehydrogenase subunit 1 [Dinodon semicarinatus]
>gi|7431922|pir||T11088 NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain 1 - Dinodon semicarinatus
mitochondrion (fragment) >gi|3582122|dbj|BAA33022.1|
(AB008539) NADH dehydrogenase subunit 1 [Dinodon
semicarinatus]
Length = 321
Score = 76.9 bits (186), Expect = 3e-13
Identities = 80/315 (25%), Positives = 145/315 (45%), Gaps = 32/315 (10%)
Query: 12 LLYAYVSIISLLF-SGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETIIPNTA 64
LLY +I++ F + ++RKL+ MQ R GP + LQP D LKL++KE P +
Sbjct: 13 LLYILSILIAVAFLTLLERKLLGYMQHRKGPNLVGPMGLLQPIADGLKLITKEATKPTMS 72
Query: 65 N-FMFRAAPVLMLTTVIALLAYTPMGF-SPLFATKGDIIVFIYLLTLADFFLILGVMSSG 122
+ +F +P++ L ++AL ++ PM +PL ++ + + + + ++ SS
Sbjct: 73 SPILFTLSPIMAL--ILALTSWAPMPMPTPLTNMNLGLLFIMAMSGMFTYAILWSGWSSN 130
Query: 123 SPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELGPMVW 182
S Y +GA R VA +IS E + LG+ + I G L + + ++W L
Sbjct: 131 SKYPLMGAMRAVAQIISYE--VTLGLIIISMAILSGGYS--LMLFTETQEHMWLL----- 181
Query: 183 VAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEFIAA 242
++ L ++ + +E F++ E E E+ G VE+S ++ LAE
Sbjct: 182 LSSWPLAMMWFTSTLAETNRSPFDLTEGESELVSGFNVEFSAGPFALLFLAEYTNILFMN 241
Query: 243 SLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIF---RTVTGRLKITQAVNL 299
+L + G+ Q + +NL+ T ++ T+F R R + Q ++L
Sbjct: 242 TLSTMMFL--NPGMTNPQLFTINLMTKT-------MILTTLFLWTRASYPRFRYDQLMHL 292
Query: 300 LWTRVFAASIVGALL 314
LW + ++ LL
Sbjct: 293 LWKQYLPLTLAMYLL 307
>gi|5836073 NADH dehydrogenase subunit 1 [Raja radiata] >gi|7431929|pir||T11287
NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
Raja radiata mitochondrion >gi|4406270|gb|AAD19929.1|
(AF106038) NADH dehydrogenase subunit 1 [Raja radiata]
Length = 324
Score = 76.9 bits (186), Expect = 3e-13
Identities = 85/312 (27%), Positives = 149/312 (47%), Gaps = 35/312 (11%)
Query: 2 KVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMS 55
++I+ L +I + + ++L ++RK++ MQ R GP + LQP D LKL +
Sbjct: 8 QIIHPLTYIIPVLLATAFLTL----VERKILGYMQLRKGPNVVGPYGLLQPIADGLKLFT 63
Query: 56 KETIIPN-TANFMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFL 114
KE I P+ +++F+F A P LT + + P+ S L G ++FI ++ +
Sbjct: 64 KEPIRPSHSSHFLFLATPTAALTLALLMWMPLPLPHSILNLNLG--LLFILAISSLTVYT 121
Query: 115 ILGV-MSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--E 171
ILG +S S Y +GA R VA IS E + LG+ + I G F+L + +
Sbjct: 122 ILGSGWASNSKYALMGALRAVAQTISYE--VTLGLILLSLVIMAGG----FTLHTFNFTQ 175
Query: 172 HNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
+W L P A + + ++S LA E F++ E E E+ G +EY+G +
Sbjct: 176 ETIWLLIP----AWPLAMMWYISTLA-ETNRAPFDLTEGESELVSGFNIEYAGGPFALFL 230
Query: 232 LAE--SIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTG 289
LAE +I S+++ + + +P I ++L+I + I+ L + +
Sbjct: 231 LAEYSNILMMNTLSVILFMGVSYNPSLPQIS--TLSLMIKATMLTILFLWIRASY----P 284
Query: 290 RLKITQAVNLLW 301
R + Q ++L+W
Sbjct: 285 RFRYDQLMHLVW 296
>gi|7335680 NADH dehydrogenase subunit 1 [Pupa strigosa]
>gi|6683073|dbj|BAA89018.1| (AB028237) TAA stop codon is
completed by the addition of 3' A residues to the mRNA
[Pupa strigosa]
Length = 302
Score = 76.1 bits (184), Expect = 5e-13
Identities = 81/308 (26%), Positives = 132/308 (42%), Gaps = 45/308 (14%)
Query: 24 FSGIDRKLVARMQRRIGPP------ILQPFYDFLKLMSKETIIPNTANFM-FRAAPVLML 76
F+ ++RK++ Q R GP ++QP D +KL KE I+P ++N + AP L L
Sbjct: 22 FTLLERKVLGYAQIRKGPNKVGIWGVVQPLADAVKLFVKEKIVPLSSNVLSLFIAPALSL 81
Query: 77 TTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILGVMSSGSPYGRIGAAREVAM 136
T ++L P FS + T G +++F + L + +L +S S Y +GA R A
Sbjct: 82 TLALSLWFMYPSAFSVKYLTWG-LLLFFCITALNVYSTLLAGWASNSKYAFLGALRAAAQ 140
Query: 137 LISREPAMMLGV-FAVMWGISKLGVQKPFSLGSLYEHNLWELGPMVWVAGVILIYVFMSW 195
IS E +++L + FA M L + WE + +++I + W
Sbjct: 141 TISYEVSLLLIILFAAM----------------LIKTGCWENAAKSYPVVLLMIPIGAIW 184
Query: 196 LAS---EIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEFIAASLVVAVLFPW 252
S E F+ E E EI G +EYS ++ +AE + S+ + F
Sbjct: 185 FTSTVAETNRAPFDFAEGESEIVSGFNIEYSSGLFALLFMAE-YGNILFMSMATCIWF-- 241
Query: 253 QVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTG---RLKITQAVNLLWTRVFAASI 309
G N+++ V VLLV+ +F V G R + + L W S+
Sbjct: 242 -------LGGTSNIML---TVGFVLLVS-VLFLLVRGAYPRFRYDLLMMLCWKSFLPVSL 290
Query: 310 VGALLLAL 317
V ++ L
Sbjct: 291 VSLNIIVL 298
>gb|AAF81381.1|AF164585_2 (AF164585) NADH dehydrogenase subunit 1 [Drosophila erecta]
Length = 354
Score = 75.7 bits (183), Expect = 7e-13
Identities = 84/331 (25%), Positives = 145/331 (43%), Gaps = 35/331 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGP------PILQPFYDFLKLM 54
MK I +LIG +LL V + + ++RK++ +Q R GP I QPF D +KL
Sbjct: 1 MKFILSLIGSLLLIVCVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLF 60
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE P +N++ + +P+ L + + P F L++ + F+ +L +
Sbjct: 61 TKEQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPF-FVKLYSFNLGGLFFLCCTSLGVYT 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+++ SS S Y +G R VA IS E ++ L + + ++ I + F Y+
Sbjct: 120 VMVAGWSSNSNYALLGGLRAVAQTISYEVSLALIMLSFIFLIGSYNMIYFF----YYQIY 175
Query: 174 LWELGPMVWVAGVILIYVFMSWLA---SEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+W L +IL + + WL +E F+ E E E+ G VEYS +I
Sbjct: 176 MWFL--------IILFPMGLVWLTISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALI 227
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
+AE + S++ V+F + + NL+ + FI L R R
Sbjct: 228 FMAE-YASILFMSMLFCVIF--------LGCDVFNLMFYVKLTFISFLFIWA--RGTLPR 276
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ + + L W + F + + LL +G I
Sbjct: 277 FRYDKLMYLAW-KCFLSFSLNYLLFFIGFKI 306
>gb|AAG19140.1| (AE005012) NADH dehydrogenase/oxidoreductase; NdhG4 [Halobacterium
sp. NRC-1]
Length = 314
Score = 75.7 bits (183), Expect = 7e-13
Identities = 81/309 (26%), Positives = 138/309 (44%), Gaps = 29/309 (9%)
Query: 29 RKLVARMQRRIGPPILQPF------YDFLKLMSKETIIPNTANF-MFRAAPVLMLTTVIA 81
RK+ A RI + P+ D ++L+SKE +IP + + AP+++ + +
Sbjct: 14 RKITAAFTDRISVNRVGPWGLGTIVVDSVRLLSKELVIPEGVDRPAYDLAPIVLAGSALF 73
Query: 82 LLAYTPMGFSPLFATKGDIIVFIYLL-TLADFFLILGVMSSGSPYGRIGAAREVAMLISR 140
A PMG A +VF++ + ++A LI+G +S + Y +G R VA I+
Sbjct: 74 AFAVIPMGNGIQLADPEVGLVFVFAIASIASLGLIMGGYASNNKYSLLGGLRAVAQNIAY 133
Query: 141 EPAMMLGVFAVMWGISKL------GVQKPFSLGSLYEHNLWELGPMVWVAGVILIYVFMS 194
E ++L +V+ L +Q+ +L ++ + W A V +
Sbjct: 134 EIPLVLTAASVVLFTGTLQLSEIVAIQQNTTLATIAGVRI-----PAWFAFVNPFAFVLF 188
Query: 195 WLASEIEVGF--FNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEFIAASLVVAVLFPW 252
+A+ EVG F+ PEA EI G EYS Y + L E I F+ + ++A LF
Sbjct: 189 VVANLAEVGRNPFDTPEAPTEIVAGYQTEYSSAYFVLFYLGEFIHIFLGGA-IIATLFLG 247
Query: 253 QVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQAVNLLWTRVFAASIVGA 312
G P + G++ T K++ V + R+ R++I Q + + W + S
Sbjct: 248 GPGGPFLPGFV----WFTIKIWAVYFFTQWC-RSAIPRVRIDQLIGIGWKGLLVLSFANL 302
Query: 313 LL--LALGV 319
+L ALGV
Sbjct: 303 VLTATALGV 311
>gi|5835889 NADH dehydrogenase subunit 1 [Ceratitis capitata]
>gi|5101677|emb|CAB45100.1| (AJ242872) NADH
dehydrogenase (ubiquinone) chain 1 [Ceratitis capitata]
Length = 343
Score = 74.9 bits (181), Expect = 1e-12
Identities = 66/260 (25%), Positives = 120/260 (45%), Gaps = 24/260 (9%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLM 54
M+ I +L+G ++L V + + ++RK++ +Q R GP I QPF D +KL
Sbjct: 1 MEFILSLVGSLILVICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLF 60
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE P +N++ + +P+ L + P+ F LF+ I+ F+ +L +
Sbjct: 61 TKEQTYPLLSNYISYYFSPIFSLFISLIAWLCIPL-FIKLFSFNLGILFFLCCTSLGVYT 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+++ SS S Y +G R VA IS E +M L + + ++ I + + Y+
Sbjct: 120 VMIAGWSSNSNYALLGGLRAVAQTISYEVSMALILLSFVFLIGSYNILDFY----YYQSY 175
Query: 174 LWELGPMVWVAGVILIYVFMSWLA---SEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+W L + L + + W +E F+ E E E+ G +EYS +I
Sbjct: 176 IWFL--------IFLFPISLVWFCICLAETNRTPFDFAEGESELVSGFNIEYSSGGFALI 227
Query: 231 KLAESIKEFIAASLVVAVLF 250
+AE + S++ +V+F
Sbjct: 228 FMAE-YASILFMSMLFSVIF 246
>pir||S37065 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain H - Escherichia
coli >gi|397905|emb|CAA48367.1| (X68301) NADH
dehydrogenase I, subunit nuoH [Escherichia coli]
Length = 325
Score = 74.5 bits (180), Expect = 2e-12
Identities = 76/331 (22%), Positives = 144/331 (42%), Gaps = 29/331 (8%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLM 54
++++ ++ +++ V S R+L+ Q R GP LQ D +K+
Sbjct: 9 IEILLTILKAVVILLVVVTCGAFMSFAKRRLLGLFQNRYGPNRVAWGGSLQLVADMIKMF 68
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKG-DIIVFIYLLTLADF 112
KE IP ++ +F AP++ T+++ A P+ + A I+ F+ + LA +
Sbjct: 69 FKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFLMMAGLAVY 128
Query: 113 FLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEH 172
++ SS + Y +GA R A +S E V G+S +GV GS
Sbjct: 129 AVLFAGWSSNNKYSLLGAMRASAQTLSYE---------VFLGLSLMGVVA--QAGSFNMT 177
Query: 173 NLWELGPMVWVAGVILIYVFMSWLASEIEVGF---FNIPEAEEEIAEGTLVEYSGRYLGI 229
++ VW + + F+++ + + V F+ PEAE+E+A+G +EYSG G+
Sbjct: 178 DIVNSQAHVWNV-IPQFFGFITFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGL 236
Query: 230 IKLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTG 289
+ E I ++L+V + F G QG ++ I A ++ + R
Sbjct: 237 FFVGEYIGIVTISALMVTLFF------GGWQGPLLPPFIWFALKTAFFMMMFILIRASLP 290
Query: 290 RLKITQAVNLLWTRVFAASIVGALLLALGVM 320
R + Q ++ W +++ L+ A ++
Sbjct: 291 RPRYDQVMSFGWKICLPLTLINLLVTAAVIL 321
>sp|P33603|NUOH_ECOLI NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
8) (NUO8) >gi|7431904|pir||H64999 NADH dehydrogenase
(ubiquinone) (EC 1.6.5.3) I chain H - Escherichia coli
>gi|1788618|gb|AAC75342.1| (AE000317) NADH dehydrogenase
I chain H [Escherichia coli K12]
>gi|1799642|dbj|BAA16110.1| (D90859) NADH DEHYDROGENASE
I CHAIN H (EC 1.6.5.3) (NADH-UBIQUINONE OXIDOREDUCTASE
CHAIN 8) (NUO8). [Escherichia coli]
Length = 325
Score = 74.5 bits (180), Expect = 2e-12
Identities = 76/331 (22%), Positives = 145/331 (42%), Gaps = 29/331 (8%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLM 54
++++ ++ +++ V S +R+L+ Q R GP LQ D +K+
Sbjct: 9 IEILLTILKAVVILLVVVTCGAFMSFGERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMF 68
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKG-DIIVFIYLLTLADF 112
KE IP ++ +F AP++ T+++ A P+ + A I+ F+ + LA +
Sbjct: 69 FKEDWIPKFSDRVIFTLAPMIAFTSLLLAFAIVPVSPGWVVADLNIGILFFLMMAGLAVY 128
Query: 113 FLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEH 172
++ SS + Y +GA R A +S E V G+S +GV GS
Sbjct: 129 AVLFAGWSSNNKYSLLGAMRASAQTLSYE---------VFLGLSLMGVVA--QAGSFNMT 177
Query: 173 NLWELGPMVWVAGVILIYVFMSWLASEIEVGF---FNIPEAEEEIAEGTLVEYSGRYLGI 229
++ VW + + F+++ + + V F+ PEAE+E+A+G +EYSG G+
Sbjct: 178 DIVNSQAHVWNV-IPQFFGFITFAIAGVAVCHRHPFDQPEAEQELADGYHIEYSGMKFGL 236
Query: 230 IKLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTG 289
+ E I ++L+V + F G QG ++ I A ++ + R
Sbjct: 237 FFVGEYIGIVTISALMVTLFF------GGWQGPLLPPFIWFALKTAFFMMMFILIRASLP 290
Query: 290 RLKITQAVNLLWTRVFAASIVGALLLALGVM 320
R + Q ++ W +++ L+ A ++
Sbjct: 291 RPRYDQVMSFGWKICLPLTLINLLVTAAVIL 321
>sp|P51937|NU1M_DROSU NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 1
Length = 312
Score = 74.1 bits (179), Expect = 2e-12
Identities = 83/331 (25%), Positives = 145/331 (43%), Gaps = 35/331 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGP------PILQPFYDFLKLM 54
M+ I +LIG +LL V + + ++RK++ +Q R GP I QPF D +KL
Sbjct: 1 MEFILSLIGSLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLF 60
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE P +N++ + +P+ L + + P F L++ + F+ +L +
Sbjct: 61 TKEQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPF-FVKLYSFNLGGLFFLCCTSLGVYT 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+++ SS S Y +G R VA IS E ++ L + + ++ I + F Y+
Sbjct: 120 VMVAGWSSNSNYALLGGLRAVAQTISYEVSLALILLSFVFLIGSYNMVYFF----YYQIY 175
Query: 174 LWELGPMVWVAGVILIYVFMSWLA---SEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+W L +IL + + WL +E F+ E E E+ G VEYS +I
Sbjct: 176 VWFL--------IILFPMALVWLTISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALI 227
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
+AE + S++ V+F + + NLL + FI + R R
Sbjct: 228 FMAE-YASILFMSMLFCVIF--------LGCDVFNLLFYVKLTFISFIFIWA--RGTLPR 276
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ + + L W + F + + LL +G I
Sbjct: 277 FRYDKLMYLAW-KCFLSFSLNYLLFFIGFKI 306
>gb|AAF66629.1| (AF142999) NADH dehydrogenase subunit 1 [Pteronotus quadridens]
Length = 300
Score = 74.1 bits (179), Expect = 2e-12
Identities = 80/311 (25%), Positives = 142/311 (44%), Gaps = 34/311 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLM 54
+ ++ ++ ++L A++++I R ++ M R GP + LQP D +KL
Sbjct: 4 INLLSXIVPILLAVAFLTLIX-------RXILGYMXLRKGPNVVGPYGLLQPIADAVKLF 56
Query: 55 SKETIIPNTANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE + P T++ MF AP+L LT + + PM PL ++ + + +LA +
Sbjct: 57 TKEPLRPLTSSIAMFIIAPILALTLALTMWIPLPMPH-PLINMNLSVLFMLAMSSLAVYS 115
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLY--E 171
++ +S S Y IGA R VA IS E + + + +V L + ++L +L +
Sbjct: 116 ILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSV------LLMNGSYTLSTLIIAQ 169
Query: 172 HNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIK 231
+W + P A + + F+S LA E F++ E E+ G VEY+G +
Sbjct: 170 ECMWLIIP----AWPLAMMWFISTLA-ETNRAPFDLTGGESELVSGFNVEYAGGPFALFF 224
Query: 232 LAESIKEFIAASLVVAVLFPWQVGIPGIQGYI-VNLLIHTAKVFIVLLVAKTIFRTVTGR 290
LAE I + + +LF P + N +I T ++L ++ R + R
Sbjct: 225 LAE-YANIIMMNALTTILFLGAYNNPIMPELCPTNFMIKT----MLLTMSFLWIRASSPR 279
Query: 291 LKITQAVNLLW 301
+ Q + LLW
Sbjct: 280 FRYDQLLRLLW 290
>gb|AAF81403.1|AF164596_2 (AF164596) NADH dehydrogenase subunit 1 [Drosophila elegans]
Length = 312
Score = 74.1 bits (179), Expect = 2e-12
Identities = 82/331 (24%), Positives = 145/331 (43%), Gaps = 35/331 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGP------PILQPFYDFLKLM 54
M+ + +LIG +LL V + + ++RK++ +Q R GP I QPF D +KL
Sbjct: 1 MEFVLSLIGSLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLF 60
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE P +N++ + +P+ L + + P F L++ + F+ +L +
Sbjct: 61 TKEQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPF-FVKLYSFNLGGLFFLCCTSLGVYT 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+++ SS S Y +G R VA IS E ++ L + + ++ I + F Y+
Sbjct: 120 VMVAGWSSNSNYALLGGLRAVAQTISYEVSLALILLSFIFLIGSYNMVYLF----YYQIY 175
Query: 174 LWELGPMVWVAGVILIYVFMSWLA---SEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+W L +IL + + WL +E F+ E E E+ G VEYS +I
Sbjct: 176 MWFL--------IILFPMALVWLTISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALI 227
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
+AE + S++ V+F + + NLL + FI + R R
Sbjct: 228 FMAE-YASILFMSMLFCVIF--------LGCDVFNLLFYVKLTFISFVFIWA--RGTLPR 276
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ + + L W + F + + LL +G I
Sbjct: 277 FRYDKLMYLAW-KCFLSFSLNYLLFFIGFKI 306
>gi|5834842 NADH dehydrogenase subunit 1 [Drosophila yakuba]
>gi|128640|sp|P07710|NU1M_DROYA NADH-UBIQUINONE
OXIDOREDUCTASE CHAIN 1 >gi|85262|pir||D30020 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 - fruit
fly (Drosophila yakuba) mitochondrion
>gi|12936|emb|CAA26997.1| (X03240) NADH dehydrogenase
(ubiquinone) chain 1 [Drosophila yakuba]
Length = 324
Score = 73.7 bits (178), Expect = 3e-12
Identities = 83/331 (25%), Positives = 145/331 (43%), Gaps = 35/331 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGP------PILQPFYDFLKLM 54
M+ I +LIG +LL V + + ++RK++ +Q R GP I QPF D +KL
Sbjct: 1 MEFILSLIGSLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLF 60
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE P +N++ + +P+ L + + P F L++ + F+ +L +
Sbjct: 61 TKEQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPF-FVKLYSFNLGGLFFLCCTSLGVYT 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+++ SS S Y +G R VA IS E ++ L + + ++ I + F Y+
Sbjct: 120 VMVAGWSSNSNYALLGGLRAVAQTISYEVSLALIMLSFIFLIGSYNMIYFF----YYQIY 175
Query: 174 LWELGPMVWVAGVILIYVFMSWLA---SEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+W L +IL + + WL +E F+ E E E+ G VEYS +I
Sbjct: 176 MWFL--------IILFPMSLVWLTISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALI 227
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
+AE + S++ V+F + + NLL + FI + R R
Sbjct: 228 FMAE-YASILFMSMLFCVIF--------LGCDVFNLLFYVKLTFISFVFIWA--RGTLPR 276
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ + + L W + F + + LL +G I
Sbjct: 277 FRYDKLMYLAW-KCFLSFSLNYLLFFIGFKI 306
>gb|AAF77264.1| (AF200830) NADH dehydrogenase subunit 1 [Drosophila mauritiana]
Length = 312
Score = 73.7 bits (178), Expect = 3e-12
Identities = 83/331 (25%), Positives = 145/331 (43%), Gaps = 35/331 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGP------PILQPFYDFLKLM 54
M+ I +LIG +LL V + + ++RK++ +Q R GP I QPF D +KL
Sbjct: 1 MEFILSLIGSLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLF 60
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE P +N++ + +P+ L + + P F L++ + F+ +L +
Sbjct: 61 TKEQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPF-FVKLYSFNLGGLFFLCCTSLGVYT 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+++ SS S Y +G R VA IS E ++ L + + ++ I + F Y+
Sbjct: 120 VMVAGWSSNSNYALLGGLRAVAQTISYEVSLALILLSFIFLIGSYNMIYFF----FYQVY 175
Query: 174 LWELGPMVWVAGVILIYVFMSWLA---SEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+W L +IL + + WL +E F+ E E E+ G VEYS +I
Sbjct: 176 MWFL--------IILFPMALVWLTISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALI 227
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
+AE + S++ V+F + + NLL + FI + R R
Sbjct: 228 FMAE-YASILFMSMLFCVIF--------LGCDVFNLLFYMKLTFISFVFIWA--RGTLPR 276
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ + + L W + F + + LL +G I
Sbjct: 277 FRYDKLMYLAW-KCFLSFSLNYLLFFIGFKI 306
>gb|AAF77276.1| (AF200831) NADH dehydrogenase subunit 1 [Drosophila mauritiana]
>gi|8573638|gb|AAF77472.1| (AF200846) NADH dehydrogenase
subunit 1 [Drosophila simulans]
>gi|8573652|gb|AAF77485.1| (AF200847) NADH dehydrogenase
subunit 1 [Drosophila simulans]
>gi|8573666|gb|AAF77498.1| (AF200848) NADH dehydrogenase
subunit 1 [Drosophila simulans]
>gi|8573680|gb|AAF77511.1| (AF200849) NADH dehydrogenase
subunit 1 [Drosophila simulans]
>gi|8573694|gb|AAF77524.1| (AF200850) NADH dehydrogenase
subunit 1 [Drosophila simulans]
>gi|8573708|gb|AAF77537.1| (AF200851) NADH dehydrogenase
subunit 1 [Drosophila simulans]
>gi|8573722|gb|AAF77550.1| (AF200852) NADH dehydrogenase
subunit 1 [Drosophila simulans]
>gi|8573736|gb|AAF77563.1| (AF200853) NADH dehydrogenase
subunit 1 [Drosophila simulans]
>gi|8573750|gb|AAF77576.1| (AF200854) NADH dehydrogenase
subunit 1 [Drosophila simulans]
Length = 312
Score = 73.7 bits (178), Expect = 3e-12
Identities = 83/331 (25%), Positives = 145/331 (43%), Gaps = 35/331 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGP------PILQPFYDFLKLM 54
M+ I +LIG +LL V + + ++RK++ +Q R GP I QPF D +KL
Sbjct: 1 MEFILSLIGSLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLF 60
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE P +N++ + +P+ L + + P F L++ + F+ +L +
Sbjct: 61 TKEQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPF-FVKLYSFNLGGLFFLCCTSLGVYT 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+++ SS S Y +G R VA IS E ++ L + + ++ I + F Y+
Sbjct: 120 VMVAGWSSNSNYALLGGLRAVAQTISYEVSLALILLSFIFLIGSYNMIYFF----FYQVY 175
Query: 174 LWELGPMVWVAGVILIYVFMSWLA---SEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+W L +IL + + WL +E F+ E E E+ G VEYS +I
Sbjct: 176 MWFL--------IILFPMGLVWLTISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALI 227
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
+AE + S++ V+F + + NLL + FI + R R
Sbjct: 228 FMAE-YASILFMSMLFCVIF--------LGCDVFNLLFYVKLTFISFVFIWA--RGTLPR 276
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ + + L W + F + + LL +G I
Sbjct: 277 FRYDKLMYLAW-KCFLSFSLNYLLFFIGFKI 306
>gb|AAF81379.1|AF164584_2 (AF164584) NADH dehydrogenase subunit 1 [Drosophila orena]
Length = 341
Score = 73.7 bits (178), Expect = 3e-12
Identities = 83/331 (25%), Positives = 145/331 (43%), Gaps = 35/331 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGP------PILQPFYDFLKLM 54
M+ I +LIG +LL V + + ++RK++ +Q R GP I QPF D +KL
Sbjct: 1 MEFILSLIGSLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVSLMGIPQPFCDAIKLF 60
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE P +N++ + +P+ L + + P F L++ + F+ +L +
Sbjct: 61 TKEQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPF-FVKLYSFNLGGLFFLCCTSLGVYT 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+++ SS S Y +G R VA IS E ++ L + + ++ I + F Y+
Sbjct: 120 VMVAGWSSNSNYALLGGLRAVAQTISYEVSLALIMLSFIFLIGSYNMIYFF----YYQVY 175
Query: 174 LWELGPMVWVAGVILIYVFMSWLA---SEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+W L +IL + + WL +E F+ E E E+ G VEYS +I
Sbjct: 176 MWFL--------IILFPMSLVWLTISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALI 227
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
+AE + S++ V+F + + NLL + FI + R R
Sbjct: 228 FMAE-YASILFMSMLFCVIF--------LGCDVFNLLFYVKLTFISFVFIWV--RGTLPR 276
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ + + L W + F + + LL +G I
Sbjct: 277 FRYDKLMYLAW-KCFLSFSLNYLLFFIGFKI 306
>gb|AAF81385.1|AF164587_2 (AF164587) NADH dehydrogenase subunit 1 [Drosophila mauritiana]
Length = 312
Score = 73.7 bits (178), Expect = 3e-12
Identities = 83/331 (25%), Positives = 146/331 (44%), Gaps = 35/331 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGP------PILQPFYDFLKLM 54
M+ I +LIG +LL V + + ++RK++ +Q R GP I QPF D +KL
Sbjct: 1 MEFILSLIGSLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLF 60
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE P +N++ + +P+ L + + P F L++ + F+ +L +
Sbjct: 61 TKEQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPF-FVKLYSFNLGGLFFLCCTSLGVYT 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+++ SS S Y +G R VA IS E ++ L + + ++ I + F Y+
Sbjct: 120 VMVAGWSSNSNYALLGGLRAVAQTISYEVSLALILLSFIFLIGSYNMIYFF----FYQVY 175
Query: 174 LWELGPMVWVAGVILIYVFMSWLA---SEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+W L +IL + + WL +E F+ E E E+ G V+YS L +I
Sbjct: 176 MWFL--------IILFPMGLVWLTISLAETNRTPFDFAEGESELVSGFNVKYSSGGLALI 227
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
+AE + S++ V+F + + NLL + FI + R R
Sbjct: 228 FMAE-YASILFMSMLFCVIF--------LGCDVFNLLFYVKLTFISFVFIWA--RGTLPR 276
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ + + L W + F + + LL +G I
Sbjct: 277 FRYDKLMYLAW-KCFLSFSLNYLLFFIGFKI 306
>emb|CAA23994.1| (V00650) URF 1 [Emericella nidulans]
Length = 352
Score = 73.4 bits (177), Expect = 4e-12
Identities = 89/344 (25%), Positives = 146/344 (41%), Gaps = 47/344 (13%)
Query: 7 LIGLI--LLYAYVSIISLLFSGI-DRKLVARMQRRIGPP------ILQPFYDFLKLMSKE 57
LI +I LL +++S+ F + +RK +A MQRR+GP +LQ F D LKL+ KE
Sbjct: 4 LISIIEGLLVIVPALLSVAFVTVAERKTMASMQRRLGPNAVGYYGLLQAFADALKLLLKE 63
Query: 58 TIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLL---TLADFF 113
I P AN +F P+ +T + +LL Y + F + +Y+L +LA +
Sbjct: 64 YIAPTQANILLFFLGPI--ITLIFSLLGYLVIPFGSGLDISDYNLGILYMLAVSSLATYG 121
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
++L S+ S Y +G+ R A LIS E + + V+ L + +
Sbjct: 122 ILLAGWSANSKYAFLGSLRSTAQLISYELILSSVILLVILLTGSLNIITIIE-SQRVVNL 180
Query: 174 LWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLA 233
L+ L P L VF +E F++ EAE E+ G + E+S LA
Sbjct: 181 LFPLFP--------LFLVFFIGSIAETNRAPFDLAEAESELVSGFMTEHSASIFVFFFLA 232
Query: 234 ESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLL-----------------IHTAKVFIV 276
E + L + + I + +IVN+L I ++ + +
Sbjct: 233 EYASIVLICILNSILFLGGYLSIIPLD-FIVNILNLFVITNNTILFDIFVHISSSPINLA 291
Query: 277 LLVAKTIF-----RTVTGRLKITQAVNLLWTRVFAASIVGALLL 315
L A IF R R++ Q +++ WT + I +L+
Sbjct: 292 LKTAFLIFVFIWVRASFPRIRFDQLMSVCWTVLLPIIIAYVVLI 335
>gi|6691413 NADH dehydrogenase subunit 1 [Terebratulina retusa]
>gi|6165467|emb|CAB59846.1| (AJ245743) NADH
dehydrogenase subunit 1 [Terebratulina retusa]
Length = 314
Score = 73.4 bits (177), Expect = 4e-12
Identities = 81/329 (24%), Positives = 149/329 (44%), Gaps = 44/329 (13%)
Query: 10 LILLYAYVSIISLL-----FSGIDRKLVARMQRRIGPPIL------QPFYDFLKLMSKET 58
L L Y+ ++I+ +L F+ ++RK+++ Q R GP + QP D LKL +KE
Sbjct: 3 LFLTYSLLTIVPILVSVAFFTLMERKILSYSQTRKGPNKVSLTGAPQPLADALKLFTKEL 62
Query: 59 IIPN-TANFMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLILG 117
+ P+ + +F AP + L + A S L ++G I++F+ + +L+ + ++
Sbjct: 63 LKPSYSTGVLFLMAPTMGLALALIPWALYLSPHSSLQMSRG-ILLFLCISSLSVYVTLMA 121
Query: 118 VMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWEL 177
+S S Y +GA R +A IS E +M+L + + + +Q LY W
Sbjct: 122 GWASNSKYALLGAVRGIAQTISYEVSMILILILPLILVQSFNIQAYTGSQKLY----W-- 175
Query: 178 GPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIK 237
+V +A + + ++M+ +E F+ E E E+ G +EY ++ +AE
Sbjct: 176 --LVLIAAPLAL-LWMTTSLAETNRAPFDFAEGESELVSGFNIEYGAATFALLFMAE-YA 231
Query: 238 EFIAASLVVAVLF--------PWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTG 289
+ S + A LF P +G+P L + +A + V L A R
Sbjct: 232 NILFLSFLTATLFLGASTPETPLTLGLP--------LWMKSAFIAFVFLWA----RATLP 279
Query: 290 RLKITQAVNLLWTRVFAASI-VGALLLAL 317
RL+ +++ W ++ + A L+AL
Sbjct: 280 RLRYDLLMSMTWKSFLPVALTILAPLIAL 308
>gb|AAF77250.1| (AF200829) NADH dehydrogenase subunit 1 [Drosophila melanogaster]
Length = 312
Score = 73.4 bits (177), Expect = 4e-12
Identities = 82/331 (24%), Positives = 146/331 (43%), Gaps = 35/331 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLM 54
M+ I +LIG +LL V + + ++RK++ +Q R GP I QPF D +KL
Sbjct: 1 MEFILSLIGSLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLF 60
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE P +N++ + +P+ L + + P F L++ + F+ +L +
Sbjct: 61 TKEQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPF-FVKLYSFNLGGLFFLCCTSLGVYT 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+++ SS S Y +G R VA IS E ++ L + + ++ I + F Y+
Sbjct: 120 VMVAGWSSNSNYALLGGLRAVAQTISYEVSLALILLSFIFLIGSYNMIYFF----FYQVY 175
Query: 174 LWELGPMVWVAGVILIYVFMSWLA---SEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+W L +IL + + W++ +E F+ E E E+ G VEYS +I
Sbjct: 176 MWFL--------IILFPMALVWMSISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALI 227
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
+AE + S++ V+F + + NLL + FI + R R
Sbjct: 228 FMAE-YASILFMSMLFCVIF--------LGCDVFNLLFYMKLTFISFVFIWV--RGTLPR 276
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ + + L W + F + + LL +G I
Sbjct: 277 FRYDKLMYLAW-KCFLSFSLNYLLFFIGFKI 306
>gb|AAF77381.1| (AF200839) NADH dehydrogenase subunit 1 [Drosophila simulans]
>gi|8573554|gb|AAF77394.1| (AF200840) NADH dehydrogenase
subunit 1 [Drosophila simulans]
>gi|8573568|gb|AAF77407.1| (AF200841) NADH dehydrogenase
subunit 1 [Drosophila simulans]
>gi|8573582|gb|AAF77420.1| (AF200842) NADH dehydrogenase
subunit 1 [Drosophila simulans]
>gi|8573596|gb|AAF77433.1| (AF200843) NADH dehydrogenase
subunit 1 [Drosophila simulans]
>gi|8573610|gb|AAF77446.1| (AF200844) NADH dehydrogenase
subunit 1 [Drosophila simulans]
>gi|8573624|gb|AAF77459.1| (AF200845) NADH dehydrogenase
subunit 1 [Drosophila simulans]
Length = 312
Score = 73.4 bits (177), Expect = 4e-12
Identities = 83/331 (25%), Positives = 145/331 (43%), Gaps = 35/331 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGP------PILQPFYDFLKLM 54
M+ I +LIG +LL V + + ++RK++ +Q R GP I QPF D +KL
Sbjct: 1 MEFILSLIGSLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLF 60
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE P +N++ + +P+ L + + P F L++ + F+ +L +
Sbjct: 61 TKEQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPF-FVKLYSFNLGGLFFLCCTSLGVYT 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+++ SS S Y +G R VA IS E ++ L + + ++ I + F Y+
Sbjct: 120 VMVAGWSSNSNYALLGGLRAVAQTISYEVSLALILLSFIFLIGSYNMIYFF----FYQVY 175
Query: 174 LWELGPMVWVAGVILIYVFMSWLA---SEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+W L +IL + + WL +E F+ E E E+ G VEYS +I
Sbjct: 176 MWFL--------IILFPMGLVWLTISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALI 227
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
+AE + S++ V+F + + NLL + FI + R R
Sbjct: 228 FMAE-YASILFMSMLFCVIF--------LGCDVFNLLFYMKLTFISFVF--IWIRGTLPR 276
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ + + L W + F + + LL +G I
Sbjct: 277 FRYDKLMYLAW-KCFLSFSLNYLLFFIGFKI 306
>gb|AAF81387.1|AF164588_2 (AF164588) NADH dehydrogenase subunit 1 [Drosophila simulans]
Length = 312
Score = 73.4 bits (177), Expect = 4e-12
Identities = 83/331 (25%), Positives = 146/331 (44%), Gaps = 35/331 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGP------PILQPFYDFLKLM 54
M+ I +LIG +LL V + + ++RK++ +Q R GP I QPF D +KL
Sbjct: 1 MEFILSLIGSLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLF 60
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE P +N++ + +P+ L + + P F L++ + F+ +L +
Sbjct: 61 TKEQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPF-FVKLYSFNLGGLFFLCCTSLGVYT 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+++ SS S Y +G R VA IS E ++ L + + ++ I + F Y+
Sbjct: 120 VMVAGWSSNSNYALLGGLRAVAQTISYEVSLALILLSFIFLIGSYNMIYFF----FYQVY 175
Query: 174 LWELGPMVWVAGVILIYVFMSWLA---SEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+W L +IL + + WL +E F+ E E E+ G V+YS L +I
Sbjct: 176 MWFL--------IILFPMGLVWLTISLAETNRTPFDFAEGESELVSGFNVKYSSGGLALI 227
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
+AE + S++ V+F + + NLL + FI + R R
Sbjct: 228 FMAE-YASILFMSMLFCVIF--------LGCDVFNLLFYMKLTFISFVF--IWIRGTLPR 276
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ + + L W + F + + LL +G I
Sbjct: 277 FRYDKLMYLAW-KCFLSFSLNYLLFFIGFKI 306
>gb|AAF81391.1|AF164590_2 (AF164590) NADH dehydrogenase subunit 1 [Bactrocera oleae]
Length = 343
Score = 73.4 bits (177), Expect = 4e-12
Identities = 66/247 (26%), Positives = 114/247 (45%), Gaps = 23/247 (9%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLM 54
M+ I ++IG ++L V + + ++RK++ +Q R GP I QPF D +KL
Sbjct: 1 MEFILSVIGGLILVICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLF 60
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE P +N++ + +P+ L + P+ F LF+ ++ F+ +L +
Sbjct: 61 TKEQTYPLLSNYISYYFSPIFSLFLSLVAWLCIPL-FVKLFSFNLGLLFFLCCASLGVYT 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+++ SS S Y +G R VA IS E +M L + + ++ I + F Y+
Sbjct: 120 VMVAGWSSNSNYALLGGLRAVAQTISYEVSMALVLLSFVFLIGSYNILDFF----YYQKF 175
Query: 174 LWELGPMVWVAGVILIYVFMSWLA---SEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+W L VIL + + W +E F+ E E E+ G +EYS +I
Sbjct: 176 VWFL--------VILFPMKLVWFCICLAETNRTPFDFAEGESELVSGFNIEYSSGGFALI 227
Query: 231 KLAESIK 237
+AE K
Sbjct: 228 FMAEYAK 234
>gb|AAF81393.1|AF164591_2 (AF164591) NADH dehydrogenase subunit 1 [Drosophila lutescens]
Length = 312
Score = 73.4 bits (177), Expect = 4e-12
Identities = 82/331 (24%), Positives = 145/331 (43%), Gaps = 35/331 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGP------PILQPFYDFLKLM 54
M+ + +LIG +LL V + + ++RK++ +Q R GP I QPF D +KL
Sbjct: 1 MEFVLSLIGSLLLVICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLF 60
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE P +N++ + +P+ L + + P F L++ + F+ +L +
Sbjct: 61 TKEQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPF-FVKLYSFNLGGLFFLCCTSLGVYT 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+++ SS S Y +G R VA IS E ++ L + + ++ I + F Y+
Sbjct: 120 VMVAGWSSNSNYALLGGLRAVAQTISYEVSLALILLSFIFLIGSYNMIYFFH----YQIY 175
Query: 174 LWELGPMVWVAGVILIYVFMSWLA---SEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+W L +IL + + WL +E F+ E E E+ G VEYS +I
Sbjct: 176 MWFL--------IILFPMALVWLTISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALI 227
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
+AE + S++ V+F + + NLL + FI + R R
Sbjct: 228 FMAE-YASILFMSMLFCVIF--------LGCDVFNLLFYVKLTFISFVFIWA--RGTLPR 276
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ + + L W + F + + LL +G I
Sbjct: 277 FRYDKLMYLAW-KCFLSFSLNYLLFFIGFKI 306
>gb|AAF81397.1|AF164593_2 (AF164593) NADH dehydrogenase subunit 1 [Drosophila mimetica]
Length = 312
Score = 73.4 bits (177), Expect = 4e-12
Identities = 82/331 (24%), Positives = 145/331 (43%), Gaps = 35/331 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGP------PILQPFYDFLKLM 54
M+ + +LIG +LL V + + ++RK++ +Q R GP I QPF D +KL
Sbjct: 1 MEFVLSLIGSLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLF 60
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE P +N++ + +P+ L + + P F L++ + F+ +L +
Sbjct: 61 TKEQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPF-FVKLYSFNLGGLFFLCCTSLGVYT 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+++ SS S Y +G R VA IS E ++ L + + ++ I + F Y+
Sbjct: 120 VMVAGWSSNSNYALLGGLRAVAQTISYEVSLALILLSFIFLIGSYNMIYFFH----YQIY 175
Query: 174 LWELGPMVWVAGVILIYVFMSWLA---SEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+W L +IL + + WL +E F+ E E E+ G VEYS +I
Sbjct: 176 MWFL--------IILFPMALVWLTISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALI 227
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
+AE + S++ V+F + + NLL + FI + R R
Sbjct: 228 FMAE-YASILFMSMLFCVIF--------LGCDVFNLLFYVKLTFISFVFIWA--RGTLPR 276
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ + + L W + F + + LL +G I
Sbjct: 277 FRYDKLMYLAW-KCFLSFSLNYLLFFIGFKI 306
>gb|AAF97804.1|AF281148_8 (AF281148) NADH dehydrogenase I subunit H [Pseudomonas fluorescens]
Length = 331
Score = 73.4 bits (177), Expect = 4e-12
Identities = 77/338 (22%), Positives = 150/338 (43%), Gaps = 40/338 (11%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPILQPF------YDFLKLMSK 56
VI ++ I++ V + L S ++R+L+ Q R GP + PF D +K+ K
Sbjct: 11 VILTVLKAIVILLAVVVAGALLSFVERRLLGWWQDRYGPNRVGPFGMFQIAADMIKMFFK 70
Query: 57 ETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKG---DIIVFIYLLTLADF 112
E P A+ +F APV+ ++ ++ A P+ +P + ++ F + L+ +
Sbjct: 71 EDWTPPFADKVIFTLAPVVAMSALLIAFAIIPI--TPTWGVADLNIGLLFFFAMAGLSVY 128
Query: 113 FLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGV---QKPFSLGSL 169
++ SS + + +G+ R A +S E V G+S +G+ F++ +
Sbjct: 129 PVLFAGWSSNNKFALLGSLRASAQTVSYE---------VFMGLSLMGIVIQAGSFNMRDI 179
Query: 170 YEH---NLWELGPMVWVAGVILIYVFMSWLASEIEVGF---FNIPEAEEEIAEGTLVEYS 223
E+ NLW + P + F ++ + + V F+ PEAE+E+A+G +EY+
Sbjct: 180 VEYQAQNLWFIIPQ--------FFGFCTFFIAGVAVTHRHPFDQPEAEQELADGYHIEYA 231
Query: 224 GRYLGIIKLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTI 283
G G+ + E I + ++L+V + F G I + + F ++L
Sbjct: 232 GMKWGMFFVGEYIGIILISALLVTLFFGGWHGPFDILPQLSFVWFALKTAFFIMLFVLCA 291
Query: 284 FRTVTGRLKITQAVNLLWTRVFAASIVGALLLALGVMI 321
R T R + Q ++ W +++ L+ A V++
Sbjct: 292 PR--TPRPRYDQVMDFSWKFCLPLTLINMLVTAAIVLM 327
>gb|AAF77238.1| (AF200828) NADH dehydrogenase subunit 1 [Drosophila melanogaster]
Length = 312
Score = 73.0 bits (176), Expect = 5e-12
Identities = 82/331 (24%), Positives = 146/331 (43%), Gaps = 35/331 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGP------PILQPFYDFLKLM 54
M+ I +LIG +LL V + + ++RK++ +Q R GP I QPF D +KL
Sbjct: 1 MEFILSLIGSLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLF 60
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE P +N++ + +P+ L + + P F L++ + F+ +L +
Sbjct: 61 TKEQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPF-FVKLYSFNLGGLFFLCCTSLGVYT 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+++ SS S Y +G R VA IS E ++ L + + ++ I + F Y+
Sbjct: 120 VMVAGWSSNSNYALLGGLRAVAQTISYEVSLALILLSFIFLIGSYNMIYFF----FYQVY 175
Query: 174 LWELGPMVWVAGVILIYVFMSWLA---SEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+W L +IL + + W++ +E F+ E E E+ G VEYS +I
Sbjct: 176 MWFL--------IILFPMALVWVSISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALI 227
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
+AE + S++ V+F + + NLL + FI + R R
Sbjct: 228 FMAE-YASILFMSMLFCVIF--------LGCDVFNLLFYMKLTFISFVFIWV--RGTLPR 276
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ + + L W + F + + LL +G I
Sbjct: 277 FRYDKLMYLAW-KCFLSFSLNYLLFFIGFKI 306
>gb|AAF81367.1|AF164578_2 (AF164578) NADH dehydrogenase subunit 1 [Drosophila ananassae]
Length = 314
Score = 73.0 bits (176), Expect = 5e-12
Identities = 69/260 (26%), Positives = 121/260 (46%), Gaps = 24/260 (9%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGP------PILQPFYDFLKLM 54
MK + +LIG +LL V + + ++RK++ +Q R GP I QPF D +KL
Sbjct: 1 MKFVLSLIGSLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLF 60
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE P +N++ + +P+ L + + P F L++ + F+ +L +
Sbjct: 61 TKEQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPF-FVKLYSFNLGGLFFLCCTSLGVYT 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+++ SS S Y +G R VA IS E ++ L + + ++ I + + Y+
Sbjct: 120 VMVAGWSSNSNYALLGGLRAVAQTISYEVSLALILLSFIFLIGSYNMVYFY----YYQIY 175
Query: 174 LWELGPMVWVAGVILIYVFMSWLA---SEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+W L VIL + + WL +E F+ E E E+ G VEYS +I
Sbjct: 176 MWFL--------VILFPMALVWLTISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALI 227
Query: 231 KLAESIKEFIAASLVVAVLF 250
+AE + S++ +V+F
Sbjct: 228 FMAE-YASILFMSMLFSVIF 246
>gb|AAF81399.1|AF164594_2 (AF164594) NADH dehydrogenase subunit 1 [Drosophila ficusphila]
Length = 312
Score = 73.0 bits (176), Expect = 5e-12
Identities = 82/331 (24%), Positives = 145/331 (43%), Gaps = 35/331 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGP------PILQPFYDFLKLM 54
M+ + +LIG +LL V + + ++RK++ +Q R GP I QPF D +KL
Sbjct: 1 MEFVLSLIGSLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLF 60
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE P +N++ + +P+ L + + P F L++ + F+ +L +
Sbjct: 61 TKEQTYPLRSNYLSYYISPIFSLFLSLFVWMCMPF-FVKLYSFNLGGLFFLCCTSLGVYT 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+++ SS S Y +G R VA IS E ++ L + + ++ I + F Y+
Sbjct: 120 VMVAGWSSNSNYALLGGLRAVAQTISYEVSLSLILLSFIFLIGSYNMIYFFH----YQIY 175
Query: 174 LWELGPMVWVAGVILIYVFMSWLA---SEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+W L +IL + + WL +E F+ E E E+ G VEYS +I
Sbjct: 176 MWFL--------IILFPMALVWLTISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALI 227
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
+AE + S++ V+F + + NLL + FI + R R
Sbjct: 228 FMAE-YASILFMSMLFCVIF--------LGCDVFNLLFYIKLTFISFVFIWA--RGTLPR 276
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ + + L W + F + + LL +G I
Sbjct: 277 FRYDKLMYLAW-KCFLSFSLNYLLFFIGFKI 306
>gb|AAF81401.1|AF164595_2 (AF164595) NADH dehydrogenase subunit 1 [Drosophila eugracilis]
Length = 312
Score = 73.0 bits (176), Expect = 5e-12
Identities = 80/331 (24%), Positives = 147/331 (44%), Gaps = 35/331 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGP------PILQPFYDFLKLM 54
M+ + +LIG +LL V + + ++RK++ +Q R GP I QPF D +KL
Sbjct: 1 MEFVLSLIGSLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLF 60
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE P +N++ + +P+ L + + P F L++ + F+ +L +
Sbjct: 61 TKEQTYPLLSNYLSYYISPIFSLFLSLIVWMCMPF-FVKLYSFNLGGLFFLCCTSLGVYT 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+++ SS S Y +G R VA IS E ++ L + + ++ I +++ Y +
Sbjct: 120 VMIAGWSSNSNYALLGGLRAVAQTISYEVSLALILLSFIFLIGS------YNMIYFYHYQ 173
Query: 174 LWELGPMVWVAGVILIYVFMSWLA---SEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
++ +W +IL + + WL +E F+ E E E+ G VEYS +I
Sbjct: 174 IY-----MWFL-IILFPMALVWLTISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALI 227
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
+AE + S++ V+F + + NLL + FI + R R
Sbjct: 228 FMAE-YASILFMSMLFCVIF--------LGCDVFNLLFYIKLTFISFVFIWA--RGTLPR 276
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ + + L W + F + + LL +G I
Sbjct: 277 FRYDKLMYLAW-KCFLSFSLNYLLFFIGFKI 306
>gb|AAF72120.1|AF216203_12 (AF216203) NADH dehydrogenase subunit 1 [Limulus polyphemus]
Length = 310
Score = 72.6 bits (175), Expect = 6e-12
Identities = 84/326 (25%), Positives = 144/326 (43%), Gaps = 36/326 (11%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLMSK 56
V Y +I LI + V+ ++LL +R ++ +Q R GP +LQPF D + L
Sbjct: 7 VCYVVI-LICVLVGVAFLTLL----ERSILGYIQIRKGPNKVGVMGVLQPFSDAISLFCS 61
Query: 57 ETIIPNTANFMFR-AAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLI 115
E P +NF+F +PV L + L P+ F+ + G ++ F+ + + + ++
Sbjct: 62 EQSYPFLSNFLFYFVSPVFSLCLALCLWLIFPIFFNMVDFELG-LLFFLCVSSFGVYAMM 120
Query: 116 LGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLW 175
SS S Y +GA R VA IS E ++ L + + + +G S G ++ W
Sbjct: 121 GAGWSSNSKYAMLGAYRAVAQTISYEVSLALIILSC---VVLVGGYDLLSFGGA-QNEWW 176
Query: 176 ELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAES 235
MVW + I F S LA E F+ E E E+ G VEYS +I +AE
Sbjct: 177 ----MVWGFFPLAIVWFSSCLA-ETNRSPFDFAEGESELVSGFNVEYSSGGFALIFMAE- 230
Query: 236 IKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQ 295
+ SL+ V+F + G+ G + ++ + +F+ + R R +
Sbjct: 231 YGNILFMSLISVVIF-----LGGLGGMFIGKVVILSILFLWV-------RGTFPRFRYDS 278
Query: 296 AVNLLWTRVFAASIVGALLLALGVMI 321
+ L W+ ++ + LL + G +
Sbjct: 279 LMGLAWS-IYLPLALNYLLFSFGACL 303
>gb|AAF77289.1| (AF200832) NADH dehydrogenase subunit 1 [Drosophila sechellia]
Length = 312
Score = 72.6 bits (175), Expect = 6e-12
Identities = 82/331 (24%), Positives = 145/331 (43%), Gaps = 35/331 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGP------PILQPFYDFLKLM 54
M+ I +LIG +LL V + + ++RK++ +Q R GP I QPF D +KL
Sbjct: 1 MEFILSLIGSLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLF 60
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE P +N++ + +P+ L + + P F L++ + F+ +L +
Sbjct: 61 TKEQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPF-FVKLYSFNLGGLFFLCCTSLGVYT 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+++ SS S Y +G R VA IS E ++ L + + ++ I + + Y+
Sbjct: 120 VMVAGWSSNSNYALLGGLRAVAQTISYEVSLALILLSFIFLIGSYNMIYFY----FYQVY 175
Query: 174 LWELGPMVWVAGVILIYVFMSWLA---SEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+W L +IL + + WL +E F+ E E E+ G VEYS +I
Sbjct: 176 MWFL--------IILFPMALVWLTISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALI 227
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
+AE + S++ V+F + + NLL + FI + R R
Sbjct: 228 FMAE-YASILFMSMLFCVIF--------LGCDVFNLLFYIKLTFISFVF--IWIRGTLPR 276
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ + + L W + F + + LL +G I
Sbjct: 277 FRYDKLMYLAW-KCFLSFSLNYLLFFIGFKI 306
>gb|AAF77303.1| (AF200833) NADH dehydrogenase subunit 1 [Drosophila simulans]
>gi|8573470|gb|AAF77316.1| (AF200834) NADH dehydrogenase
subunit 1 [Drosophila simulans]
>gi|8573484|gb|AAF77329.1| (AF200835) NADH dehydrogenase
subunit 1 [Drosophila simulans]
>gi|8573498|gb|AAF77342.1| (AF200836) NADH dehydrogenase
subunit 1 [Drosophila simulans]
>gi|8573512|gb|AAF77355.1| (AF200837) NADH dehydrogenase
subunit 1 [Drosophila simulans]
>gi|8573525|gb|AAF77367.1| (AF200838) NADH dehydrogenase
subunit 1 [Drosophila simulans]
Length = 312
Score = 72.6 bits (175), Expect = 6e-12
Identities = 82/331 (24%), Positives = 145/331 (43%), Gaps = 35/331 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGP------PILQPFYDFLKLM 54
M+ I +LIG +LL V + + ++RK++ +Q R GP I QPF D +KL
Sbjct: 1 MEFILSLIGSLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLF 60
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE P +N++ + +P+ L + + P F L++ + F+ +L +
Sbjct: 61 TKEQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPF-FVKLYSFNLGGLFFLCCTSLGVYT 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+++ SS S Y +G R VA IS E ++ L + + ++ I + + Y+
Sbjct: 120 VMVAGWSSNSNYALLGGLRAVAQTISYEVSLALILLSFIFLIGSYNMIYFY----FYQVY 175
Query: 174 LWELGPMVWVAGVILIYVFMSWLA---SEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+W L +IL + + WL +E F+ E E E+ G VEYS +I
Sbjct: 176 MWFL--------IILFPMALVWLTISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALI 227
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
+AE + S++ V+F + + NLL + FI + R R
Sbjct: 228 FMAE-YASILFMSMLFCVIF--------LGCDVFNLLFYMKLTFISFVFIWA--RGTLPR 276
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ + + L W + F + + LL +G I
Sbjct: 277 FRYDKLMYLAW-KCFLSFSLNYLLFFIGFKI 306
>gb|AAF81377.1|AF164583_2 (AF164583) NADH dehydrogenase subunit 1 [Drosophila kikkawai]
Length = 312
Score = 72.6 bits (175), Expect = 6e-12
Identities = 81/331 (24%), Positives = 147/331 (43%), Gaps = 35/331 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGP------PILQPFYDFLKLM 54
M+ I +LIG +LL V + + ++RK++ +Q R GP I QPF D +KL
Sbjct: 1 MEFILSLIGSLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLF 60
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE P +N++ + +P+ L + + P F L++ + F+ +L +
Sbjct: 61 TKEQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPF-FVKLYSFNLGGLFFLCCTSLGVYT 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+++ SS S Y +G R VA IS E ++ L + + ++ I +++ Y +
Sbjct: 120 VMVAGWSSNSNYALLGGLRAVAQTISYEVSLALILLSFIFLIGS------YNMIYFYYYQ 173
Query: 174 LWELGPMVWVAGVILIYVFMSWLA---SEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
++ +W +IL + + WL +E F+ E E E+ G VEYS +I
Sbjct: 174 IY-----IWFF-IILFPMALVWLTISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALI 227
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
+AE + S++ V+F + + NLL + FI + R R
Sbjct: 228 FMAE-YASILFMSMLFCVIF--------LGCDVFNLLFYVKLTFISFVFIWA--RGTLPR 276
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ + + L W + F + + LL +G I
Sbjct: 277 FRYDKLMYLAW-KCFLSFSLNYLLFFIGFKI 306
>pir||S06059 gene ND1 intron 4 protein 1 - Podospora anserina mitochondrion
Length = 603
Score = 72.2 bits (174), Expect = 8e-12
Identities = 58/200 (29%), Positives = 95/200 (47%), Gaps = 24/200 (12%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLM 54
++V+ L+ +L AYV+I +RK +A MQRR+GP +LQ F D LKL+
Sbjct: 10 IEVVLVLVPALLGIAYVTIA-------ERKTMASMQRRLGPNFVGYYGLLQAFADALKLL 62
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADF- 112
KE + P AN +F PV +T + +LL Y + + P A + Y+L ++
Sbjct: 63 LKEYVAPTQANIILFFLGPV--ITLIFSLLGYAVIPYGPSLAINDFSLGIYYILAVSSLA 120
Query: 113 ---FLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSL 169
L+ G S+ S Y +G+ R A LIS E + + V+ L + S+
Sbjct: 121 TYGILLAGWGSANSKYAFLGSLRSTAQLISYELVLSSAILLVIMLTGSLNL----SVNIE 176
Query: 170 YEHNLWELGPMVWVAGVILI 189
+ +W + P++ V + I
Sbjct: 177 SQRAIWNIFPLLPVFIIFFI 196
>gi|11467921 NADH dehydrogenase subunit 1 [Scenedesmus obliquus]
>gi|7711043|emb|CAB90367.1| (X17375) NADH dehydrogenase
subunit 1 [Scenedesmus obliquus]
Length = 291
Score = 72.2 bits (174), Expect = 8e-12
Identities = 82/304 (26%), Positives = 135/304 (43%), Gaps = 38/304 (12%)
Query: 35 MQRRIGPP------ILQPFYDFLKLMSKETIIPNTANF-MFRAAPVLMLTTVIALLAYTP 87
MQRR GP +LQPF D LKL+ KE I+P++A+ +F AP+ LT + + +A+
Sbjct: 1 MQRRQGPNAWGLFGVLQPFLDGLKLLLKEPILPSSADQPLFLWAPI--LTFLTSQIAWAA 58
Query: 88 MGFSPLFATKGDIIVFIYLL---TLADFFLILGVMSSGSPYGRIGAAREVAMLISREPAM 144
+ S A + + +Y+L +L + ++L S S Y +G R VA +IS E M
Sbjct: 59 LPTSTAGAVRDLNLGTMYVLAVGSLGVYGILLRGWRSNSKYAFLGCCRSVAQMISYELPM 118
Query: 145 MLGVFAVMWGISKL--GVQKPFSLGSLYEHNLWELGPMVWVAGVILIYVFMSWLASEIEV 202
L V + L ++ LW L ++W+ + +E+
Sbjct: 119 GLIVLCACMIANSLNWSALVESQQNGIFLLPLWPLA-LIWIICCL----------AELNR 167
Query: 203 GFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEFIAASLVVAVLFPWQVGIP----- 257
F++PEAE E+ G VEY+ + + E + I + V +LF P
Sbjct: 168 APFDLPEAEAELVAGYNVEYASMGFALFFIRE-YRSMIMMATVTRLLFLGGTAAPMNLFF 226
Query: 258 --GIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQAVNLLWTRVFAASIVGALLL 315
+ G L T+ VFI + V T+ R K + ++L W R+ ++ G +
Sbjct: 227 LNWLPGSFWLRLKATSVVFIYIWVRATL-----PRYKYSDLMDLGWKRLLPLTLAGFVAN 281
Query: 316 ALGV 319
A+ V
Sbjct: 282 AVVV 285
>gb|AAF78602.1|AF260826_1 (AF260826) NADH subunit 1 [Cochliomyia hominivorax]
Length = 312
Score = 72.2 bits (174), Expect = 8e-12
Identities = 68/257 (26%), Positives = 120/257 (46%), Gaps = 18/257 (7%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLM 54
M+ + +I +LL +V + + ++RK++ +Q R GP I QPF D +KL
Sbjct: 1 MENLLFIISSLLLIIFVLVSVAFLTLLERKVLGYIQIRKGPNKVGIAGIPQPFCDAIKLF 60
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE P +N++ + +P+ L + + PM F LF+ ++ F+ +L +
Sbjct: 61 TKEQTYPLLSNYISYYFSPIFSLFLSLLVWMCMPM-FVKLFSFNLGLLFFLCCTSLGVYT 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+++ SS S Y +G R VA IS E ++ L + + ++ I + + Y+
Sbjct: 120 VMIAGWSSNSNYALLGGLRAVAQTISYEVSLALVLLSFIFLIGGYNMLMFYK----YQMF 175
Query: 174 LWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLA 233
+W L M +A V+ S +E F+ E E E+ G VEYS +I LA
Sbjct: 176 IWFLFIMFPMA-----LVWFSISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALIFLA 230
Query: 234 ESIKEFIAASLVVAVLF 250
E + S++ V+F
Sbjct: 231 E-YASILFMSMLFCVMF 246
>gb|AAF81371.1|AF164580_2 (AF164580) NADH dehydrogenase subunit 1 [Drosophila auraria]
Length = 312
Score = 72.2 bits (174), Expect = 8e-12
Identities = 81/331 (24%), Positives = 147/331 (43%), Gaps = 35/331 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGP------PILQPFYDFLKLM 54
M+ I +LIG +LL V + + ++RK++ +Q R GP I QPF D +KL
Sbjct: 1 MEFILSLIGSLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLF 60
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE P +N++ + +P+ L + + P F L++ + F+ +L +
Sbjct: 61 TKEQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPF-FVKLYSFNLGGLFFLCCTSLGVYT 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+++ SS S Y +G R VA IS E ++ L + + ++ I +++ Y +
Sbjct: 120 VMVAGWSSNSNYALLGGLRAVAQTISYEVSLALIMLSFIFLIGS------YNMIYFYYYQ 173
Query: 174 LWELGPMVWVAGVILIYVFMSWLA---SEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
++ +W +IL + + WL +E F+ E E E+ G VEYS +I
Sbjct: 174 IY-----IWFF-IILFPMALVWLTISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALI 227
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
+AE + S++ V+F + + NLL + FI + R R
Sbjct: 228 FMAE-YASILFMSMLFCVIF--------LGCDVFNLLFYIKLTFISFVFIWA--RGTLPR 276
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ + + L W + F + + LL +G I
Sbjct: 277 FRYDKLMYLAW-KCFLSFSLNYLLFFIGFKI 306
>gb|AAF81373.1|AF164581_2 (AF164581) NADH dehydrogenase subunit 1 [Drosophila serrata]
Length = 312
Score = 72.2 bits (174), Expect = 8e-12
Identities = 82/331 (24%), Positives = 143/331 (42%), Gaps = 35/331 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGP------PILQPFYDFLKLM 54
M+ I +LIG +LL V + + ++RK++ +Q R GP I QPF D +KL
Sbjct: 1 MEFILSLIGSLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLF 60
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE P +N++ + +P+ L + + P F L++ + F+ +L +
Sbjct: 61 TKEQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPF-FVKLYSFNLGGLFFLCCTSLGVYT 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+++ SS S Y +G R VA IS E ++ L + + + F +GS
Sbjct: 120 VMVAGWSSNSNYALLGGLRAVAQTISYEVSLALIMLSFI-----------FLIGSYNMIY 168
Query: 174 LWELGPMVWVAGVILIYVFMSWLA---SEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+ +W +IL + + WL +E F+ E E E+ G VEYS +I
Sbjct: 169 FYYYQVYIWFF-IILFPMALVWLTISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALI 227
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
+AE + S++ V+F + + NLL + FI + R R
Sbjct: 228 FMAE-YASILFMSMLFCVIF--------LGCDVFNLLFYVKLTFISFVFIWA--RGTLPR 276
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ + + L W + F + + LL +G I
Sbjct: 277 FRYDKLMYLAW-KCFLSFSLNYLLFFIGFKI 306
>gb|AAF81375.1|AF164582_2 (AF164582) NADH dehydrogenase subunit 1 [Drosophila tsacasi]
Length = 312
Score = 72.2 bits (174), Expect = 8e-12
Identities = 81/331 (24%), Positives = 147/331 (43%), Gaps = 35/331 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGP------PILQPFYDFLKLM 54
M+ I +LIG +LL V + + ++RK++ +Q R GP I QPF D +KL
Sbjct: 1 MEFILSLIGSLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLF 60
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE P +N++ + +P+ L + + P F L++ + F+ +L +
Sbjct: 61 TKEQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPF-FVKLYSFNLGGLFFLCCTSLGVYT 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+++ SS S Y +G R VA IS E ++ L + + ++ I +++ Y +
Sbjct: 120 VMVAGWSSNSNYALLGGLRAVAQTISYEVSLALIMLSFIFLIGS------YNMIYFYYYQ 173
Query: 174 LWELGPMVWVAGVILIYVFMSWLA---SEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
++ +W +IL + + WL +E F+ E E E+ G VEYS +I
Sbjct: 174 IY-----IWFF-IILFPMALVWLTISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALI 227
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
+AE + S++ V+F + + NLL + FI + R R
Sbjct: 228 FMAE-YASILFMSMLFCVIF--------LGCDVFNLLFYIKLTFISFVFIWA--RGTLPR 276
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ + + L W + F + + LL +G I
Sbjct: 277 FRYDKLMYLAW-KCFLSFSLNYLLFFIGFKI 306
>gb|AAF81383.1|AF164586_2 (AF164586) NADH dehydrogenase subunit 1 [Drosophila teissieri]
Length = 324
Score = 72.2 bits (174), Expect = 8e-12
Identities = 82/331 (24%), Positives = 145/331 (43%), Gaps = 35/331 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGP------PILQPFYDFLKLM 54
M+ I +LIG +LL V + + ++RK++ +Q R GP I QPF D +KL
Sbjct: 1 MEFILSLIGSLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLF 60
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE P +N++ + +P+ L + + P F L++ + F+ +L +
Sbjct: 61 TKEQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPF-FVKLYSFNLGGLFFLCCTSLGVYT 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+++ SS S Y +G R VA IS E ++ L + + ++ I + F Y+
Sbjct: 120 VMVAGWSSNSNYALLGGLRAVAQTISYEVSLALIMLSFIFLIGSYNMIYFF----YYQIY 175
Query: 174 LWELGPMVWVAGVILIYVFMSWLA---SEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+W L +IL + + WL +E F+ E E E+ G V+YS +I
Sbjct: 176 MWFL--------IILFPMSLVWLTISLAETNRTPFDFAEGESELVSGFNVKYSSGGFALI 227
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
+AE + S++ V+F + + NLL + FI + R R
Sbjct: 228 FMAE-YASILFMSMLFCVIF--------LGCDVFNLLFYVKLTFISFVFIWA--RGTLPR 276
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ + + L W + F + + LL +G I
Sbjct: 277 FRYDKLMYLAW-KCFLSFSLNYLLFFIGFKI 306
>gb|AAF61232.1|AF234900_1 (AF234900) NADH dehydrogenase I [Haemulon plumieri]
Length = 324
Score = 71.8 bits (173), Expect = 1e-11
Identities = 91/333 (27%), Positives = 146/333 (43%), Gaps = 36/333 (10%)
Query: 3 VIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSK 56
VI I + L V + + ++RK++ MQ R GP + LQP D +KL K
Sbjct: 5 VIVHTINTLTLIVPVLLAVAFLTLLERKVLGYMQLRKGPNVVGPYGLLQPIADGVKLFIK 64
Query: 57 ETIIP-NTANFMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFFLI 115
E + P N++ +F AP+L L+ + L A P+ + + G I+FI L+ + I
Sbjct: 65 EPVRPSNSSPLLFLLAPMLALSLALTLWAPMPLPYPMVDLNLG--ILFILALSSLTVYSI 122
Query: 116 LGV-MSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGV---QKPFSLGSLY- 170
G +S Y IG R VA +IS E + G+ KLG F+L +L
Sbjct: 123 PGSGWASNFKYAFIGQLRAVAQIISYEVGL---------GLIKLGAIIFTGGFTLQTLNV 173
Query: 171 -EHNLWELGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGI 229
+ ++W + P +A + + +E F++ E E E+ G VEY+G +
Sbjct: 174 AQESVWLILPAWPLAAMWYVST-----VAETNRAPFDLTEGESELVSGFNVEYAGGPFAL 228
Query: 230 IKLAESIKEFIAASLVVAVLFPWQVGIPGI-QGYIVNLLIHTAKVFIVLLVAKTIFRTVT 288
LAE + + + A LF P + +NL+I A +L VA R
Sbjct: 229 FFLAE-YANILLMNTLSATLFMGASHAPLYPELTAINLMIKAA----LLSVAFLWVRASY 283
Query: 289 GRLKITQAVNLLWTRVFAASIVGALLLALGVMI 321
R + Q ++L+W + F + L+ L V I
Sbjct: 284 PRFRYDQLMHLIW-KAFLPLTLALLVWHLAVPI 315
>gb|AAF81389.1|AF164589_2 (AF164589) NADH dehydrogenase subunit 1 [Drosophila sechellia]
Length = 312
Score = 71.8 bits (173), Expect = 1e-11
Identities = 81/331 (24%), Positives = 145/331 (43%), Gaps = 35/331 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGP------PILQPFYDFLKLM 54
M+ I +LIG +LL V + + ++RK++ +Q R GP I QPF D +KL
Sbjct: 1 MEFILSLIGSLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLF 60
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE P +N++ + +P+ L + + P F L++ + F+ +L +
Sbjct: 61 TKEQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPF-FVKLYSFNLGGLFFLCCTSLGVYT 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+++ SS S Y +G R VA IS E ++ L + + ++ I + + Y+
Sbjct: 120 VMVAGWSSNSNYALLGGLRAVAQTISYEVSLALILLSFIFLIGSYNMIYFY----FYQFY 175
Query: 174 LWELGPMVWVAGVILIYVFMSWLA---SEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+W L +IL + + WL +E F+ E E E+ G V+YS +I
Sbjct: 176 MWFL--------IILFPMALVWLTISLAETNRTPFDFAEGESELVSGFNVKYSSGGFALI 227
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
+AE + S++ V+F + + NLL + FI + R R
Sbjct: 228 FMAE-YASILFMSMLFCVIF--------LGCDVFNLLFYIKLTFISFVF--IWIRGTLPR 276
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ + + L W + F + + LL +G I
Sbjct: 277 FRYDKLMYLAW-KCFLSFSLNYLLFFIGFKI 306
>gb|AAF81369.1|AF164579_2 (AF164579) NADH dehydrogenase subunit 1 [Drosophila malerkotliana]
Length = 314
Score = 71.4 bits (172), Expect = 1e-11
Identities = 81/331 (24%), Positives = 145/331 (43%), Gaps = 35/331 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGP------PILQPFYDFLKLM 54
M+ I +LIG +LL V + + ++RK++ +Q R GP I QPF D +KL
Sbjct: 1 MEFILSLIGSLLLIICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLF 60
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE P +N++ + +P+ L + + P F L++ + F+ +L +
Sbjct: 61 TKEQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPF-FVKLYSFNLGGLFFLCCTSLGVYT 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+++ SS S Y +G R VA IS E ++ L + + ++ I + + Y+
Sbjct: 120 VMVAGWSSNSNYALLGGLRAVAQTISYEVSLALILLSFIFLIGSYNMIYFY----YYQIY 175
Query: 174 LWELGPMVWVAGVILIYVFMSWLA---SEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+W L +IL + + WL +E F+ E E E+ G VEYS +I
Sbjct: 176 MWFL--------IILFPMALVWLTISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALI 227
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
+AE + S++ +V+F + + NL + FI + R R
Sbjct: 228 FMAE-YASILFMSMLFSVIF--------LGCDVFNLFFYVKLTFISFVFIWA--RGTLPR 276
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ + + L W + F + + LL +G I
Sbjct: 277 FRYDKLMYLAW-KCFLSFSLNYLLFFIGFKI 306
>gb|AAF81395.1|AF164592_2 (AF164592) NADH dehydrogenase subunit 1 [Drosophila takahashii]
Length = 312
Score = 71.4 bits (172), Expect = 1e-11
Identities = 81/331 (24%), Positives = 144/331 (43%), Gaps = 35/331 (10%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGP------PILQPFYDFLKLM 54
M+ + +LIG +LL V + + ++RK++ +Q R GP I QPF D +KL
Sbjct: 1 MEFVLSLIGSLLLVICVLVSVAFLTLLERKVLGYIQIRKGPNKVGLMGIPQPFCDAIKLF 60
Query: 55 SKETIIPNTANFM-FRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF 113
+KE P +N++ + +P+ L + + P F L++ + F+ +L +
Sbjct: 61 TKEQTYPLLSNYLSYYISPIFSLFLSLFVWMCMPF-FVKLYSFNLGGLFFLCCTSLGVYT 119
Query: 114 LILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHN 173
+++ S S Y +G R VA IS E ++ L + + ++ I + F Y+
Sbjct: 120 VMVAGWSCNSNYALLGGLRAVAQTISYEVSLALILLSFIFLIGSYNMIYFFH----YQIY 175
Query: 174 LWELGPMVWVAGVILIYVFMSWLA---SEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGII 230
+W L +IL + + WL +E F+ E E E+ G VEYS +I
Sbjct: 176 MWFL--------IILFPMALVWLTISLAETNRTPFDFAEGESELVSGFNVEYSSGGFALI 227
Query: 231 KLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
+AE + S++ V+F + + NLL + FI + R R
Sbjct: 228 FMAE-YASILFMSMLFCVIF--------LGCDVFNLLFYVKLTFISFVFIWA--RGTLPR 276
Query: 291 LKITQAVNLLWTRVFAASIVGALLLALGVMI 321
+ + + L W + F + + LL +G I
Sbjct: 277 FRYDKLMYLAW-KCFLSFSLNYLLFFIGFKI 306
>sp|P29920|NQO8_PARDE NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 8 (NADH DEHYDROGENASE 1, CHAIN
8) (NDH-1, CHAIN 8) >gi|477934|pir||C45456 NADH
dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 1 -
Paracoccus denitrificans >gi|150608|gb|AAA25592.1|
(L02354) NADH dehydrogenase [Paracoccus denitrificans]
Length = 345
Score = 71.0 bits (171), Expect = 2e-11
Identities = 73/318 (22%), Positives = 142/318 (43%), Gaps = 23/318 (7%)
Query: 11 ILLYAYVSIISLLFSGIDRKLVARMQRRIGPPI------LQPFYDFLKLMSKETIIPNTA 64
++ + S+I +++ DRK+ A +Q R GP + LQ F D LK + KE +IP A
Sbjct: 22 VIAFVMGSLIFMVYG--DRKIWAAVQMRRGPNVVGPWGLLQTFADALKYIVKEIVIPAGA 79
Query: 65 N-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDIIVFIYLLTLADFF-LILGVMSSG 122
+ F++ AP L + + P + A I+FI+ + + + +I+G +S
Sbjct: 80 DKFVYFLAPFLSMMLALFAFVVIPFDEGWVMANINVGILFIFAASSLEVYGVIMGGWASN 139
Query: 123 SPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWELGPM-- 180
S Y + + R A +IS E ++ L + ++ + +L ++ E + + G +
Sbjct: 140 SKYPFLASLRSAAQMISYEVSLGLIIIGIIISTGSM------NLTAIVEAHGGDYGLLNW 193
Query: 181 VWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESIKEFI 240
W+ + ++ +F +E F++ EAE E+ G + EYS + E I ++
Sbjct: 194 YWLPHLPMVVLFFVSALAECNRPPFDLVEAESELVAGFMTEYSSTPYLLFMAGEYIAMYL 253
Query: 241 AASLVVAVLF-PWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGRLKITQAVNL 299
+L+ + F W +P I ++I F + + K I R + Q + +
Sbjct: 254 MCALLSLLFFGGWLSPVPFIADGWWWMVIKMWFWFYMFAMVKAI----VPRYRYDQLMRI 309
Query: 300 LWTRVFAASIVGALLLAL 317
W S+ +L+A+
Sbjct: 310 GWKVFLPLSLGWVVLVAI 327
>emb|CAC08255.1| (AL392146) NADH dehydrogenase subunit [Streptomyces coelicolor]
Length = 322
Score = 70.6 bits (170), Expect = 2e-11
Identities = 83/327 (25%), Positives = 140/327 (42%), Gaps = 40/327 (12%)
Query: 10 LILLYAYVSIISLLFSGIDRKLVARMQRRIGPPILQPFY-------DFLKLMSKETIIPN 62
L++++ L+ + K++A MQ R+GP F+ D +K KE ++P
Sbjct: 11 LLVVFVVFLTFPLIVGQTEHKVMAHMQGRLGPMYAGGFHGWAQLVADGVKFAQKEDVVPA 70
Query: 63 TANF-MFRAAPVLMLTTVIALLAYTPMGFSPLFATKGDII---VFIYLLTLADFFL--IL 116
A+ +F+ AP + L + +L P+G P G ++ VF L + L ++
Sbjct: 71 DADRRIFQLAPAVALLPYLLVLLAIPVG--PGEGAVGQVVDAGVFFVLAVMGVGVLGSLM 128
Query: 117 GVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYEHNLWE 176
SS + + +G R A L++ E M+L +V + + +G L W
Sbjct: 129 AGWSSANKFSLLGGLRTAAQLLAYELPMLLTAASVAMAAGTVSL-----VGILDAFEWWW 183
Query: 177 LGPMVWVAGVILIYVFMSWLASEIEVGFFNIPEAEEEIAEGTLVEYSGRYLGIIKLAESI 236
L P V ++ F++ LA E++ F++P A+ EI G EY+G + LAE
Sbjct: 184 L-PWQIVGAIVF---FVAGLA-ELQRPPFDMPVADSEIIFGAYTEYTGLRFALFLLAEYA 238
Query: 237 KEFIAASLVVAVLF------PWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVTGR 290
+ L VLF PW G G+ G++ LL F+V+ + R R
Sbjct: 239 GIVVLCGL-TTVLFLGGWHGPW--GADGL-GWVWTLLKAAVLAFVVIWL-----RVTYPR 289
Query: 291 LKITQAVNLLWTRVFAASIVGALLLAL 317
L+ Q L WT + S+ L +
Sbjct: 290 LREDQLQKLSWTLLVPLSLAQIALTGI 316
>emb|CAA96367.1| (Z71695) NADH dehydrogenase subunit 1 [Euhadra herklotsi]
Length = 296
Score = 70.2 bits (169), Expect = 3e-11
Identities = 81/321 (25%), Positives = 145/321 (44%), Gaps = 49/321 (15%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLM 54
MK+I ++ +L A+++++ +RK+++ +Q R GP + QPF D LKL
Sbjct: 1 MKLIMTMLCALLGVAFLTLL-------ERKILSYIQNRKGPNKVGLGGLFQPFADALKLF 53
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTP--MGFSPLFATKGDIIVFIYLLTLAD 111
KE+I P+++N +++ P+L L + + P ++ +F +++++ + +
Sbjct: 54 MKESITPHSSNKYLYFVFPLLGLGLGLYVWGLLPSYYSYNMIFM---PLLLYLCISAMNV 110
Query: 112 FFLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKPFSLGSLYE 171
+ LI +S S Y +GA R A IS E ++ VF +++ + L F S Y
Sbjct: 111 YILIGAGWASNSIYAFLGAMRASAQTISYEVSL---VFLLLFPMMLLPSFDFFQALSSY- 166
Query: 172 HNLWELGPMVWVAGVILIYVFMSWLAS---EIEVGFFNIPEAEEEIAEGTLVEYSGRYLG 228
P+V+ ++ + M WL S E F+ E E E+ G VEY G
Sbjct: 167 -------PVVF----LVAFSVMLWLVSVLAETNRAPFDFAEGESELVSGFNVEYGGASFA 215
Query: 229 IIKLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIFRTVT 288
++ L E + S++ +V F P L A +F+V+ R V
Sbjct: 216 LLFLGE-YTVILFTSVLTSVCFL----SPRYMALYAGLSFLVAVMFLVV-------RGVY 263
Query: 289 GRLKITQAVNLLWTRVFAASI 309
RL+ + ++L W V SI
Sbjct: 264 PRLRYDKLMDLCWKSVLPLSI 284
>sp|Q60010|NUOH_SALTY NADH DEHYDROGENASE I CHAIN H (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN
H) (NUO8) >gi|897636|gb|AAC37140.1| (L42521) NADH
dehydrogenase subunit [Salmonella typhimurium]
Length = 325
Score = 69.5 bits (167), Expect = 5e-11
Identities = 73/336 (21%), Positives = 146/336 (42%), Gaps = 39/336 (11%)
Query: 1 MKVIYALIGLILLYAYVSIISLLFSGIDRKLVARMQRRIGPP------ILQPFYDFLKLM 54
++++ +++ +++ V S +R+L+ Q R GP LQ D +K+
Sbjct: 9 IEILLSILKAVVILLVVVTCGAFMSFGERRLLGLFQNRYGPNRVGWGGSLQLVADMIKMF 68
Query: 55 SKETIIPNTAN-FMFRAAPVLMLTTVIALLAYTPMGFSPLFATKG-DIIVFIYLLTLADF 112
KE IP ++ +F AP++ T+++ A P+ + + A I F+ + LA +
Sbjct: 69 FKEDWIPKFSDRVIFTLAPMIAFTSLLLSFAIVPVSPNWVVADLNIGIWFFLMMAGLAVY 128
Query: 113 FLILGVMSSGSPYGRIGAAREVAMLISREPAMMLGVFAVMWGISKLGVQKP---FSLGSL 169
++ SS + Y +GA R A +S E V G+S +GV F++ +
Sbjct: 129 AVLFAGWSSNNKYSLLGAMRASAQTVSYE---------VFLGLSLMGVVAQAGSFNMTDI 179
Query: 170 YEH--NLWELGPMVWVAGVILIYVFMSWLASEIEVGF---FNIPEAEEEIAEGTLVEYSG 224
+ +LW + P + F+++ + + V F+ PE E+E+A+G +EYSG
Sbjct: 180 VNNQAHLWNVIPQ--------FFGFVTFAIAGVAVCHRHPFDHPETEQELADGYHIEYSG 231
Query: 225 RYLGIIKLAESIKEFIAASLVVAVLFPWQVGIPGIQGYIVNLLIHTAKVFIVLLVAKTIF 284
G+ + E I ++L+V + F G G + + A ++ +
Sbjct: 232 MKFGLFFVGEYIGIVTVSALMVTLFF------GGWHGPFLPPFVWFALKTAFFMMMFILI 285
Query: 285 RTVTGRLKITQAVNLLWTRVFAASIVGALLLALGVM 320
R R + Q ++ W +++ L+ A ++
Sbjct: 286 RASLPRPRYDQVMSFGWKVCLPLTLINLLVTAAVIL 321
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.330 0.145 0.426
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107097680
Number of Sequences: 2977
Number of extensions: 4301766
Number of successful extensions: 16285
Number of sequences better than 1.0e-10: 332
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 330
Number of HSP's that attempted gapping in prelim test: 15482
Number of HSP's gapped (non-prelim): 413
length of query: 321
length of database: 189,106,746
effective HSP length: 52
effective length of query: 269
effective length of database: 157,985,422
effective search space: 42498078518
effective search space used: 42498078518
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 165 (68.7 bits)