BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1894 (cooX-like) DE:CO-induced hydrogenase related, subunit
X
         (138 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75114 co-induced hydrogenase related, chain X PAB1894 - Py...   292  1e-78
pir||C71018 probable NADH-plastoquinone oxidoreductase subunit -...   266  8e-71
sp|P26525|NUIC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I...    82  3e-15
pir||T51317 probable CO-induced hydrogenase complex chain CooX [...    81  5e-15
emb|CAB44669.1| (AJ242867) NDH-I protein [Anabaena PCC7120]            81  7e-15
sp|P16432|HYCF_ECOLI FORMATE HYDROGENLYASE SUBUNIT 6 (FHL SUBUNI...    79  2e-14
gi|11467871 subunit I of NADH-plastoquinoneoxidoreductase [Nephr...    79  3e-14
sp|P05312|NUIC_WHEAT NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I...    78  5e-14
emb|CAA09813.1| (AJ011848) ndhI protein [Hordeum vulgare]              77  8e-14
sp|Q00236|NUIC_PLEBO NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I...    77  1e-13
gi|11466756 frxB [Marchantia polymorpha] >gi|120536|sp|P06253|NU...    76  2e-13
gi|11466019 NADH dehydrogenase 18kD subunit [Nicotiana tabacum] ...    75  5e-13
gi|11466442 subunit I of NADH-plastoquinoneoxidoreductase [Mesos...    74  7e-13
gi|11497585 NADH dehydrogenase 18kD subunit [Spinacia oleracea] ...    73  2e-12
gi|7525089 NADH dehydrogenase subunit [Arabidopsis thaliana] >gi...    72  3e-12
gi|11466851 18kDa protein related to a subunit of NADH dehydrogh...    72  3e-12
gi|11467259 NADH dehydrogenase subunit [Zea mays] >gi|1171861|sp...    72  3e-12
pir||G72281 glutamate synthase, beta subunit - Thermotoga mariti...    71  5e-12
emb|CAB67224.1| (AJ271079) NADH-plastoquinone oxidoreductase sub...    71  5e-12
pir||A71019 probable NADH-plastoquinone oxidoreductase subunit -...    71  8e-12
pir||D75114 NADH dehydrogenase I, chain I PAB0496 - Pyrococcus a...    69  3e-11
pir||F70413 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain...    67  9e-11

>pir||H75114 co-induced hydrogenase related, chain X PAB1894 - Pyrococcus abyssi
           (strain Orsay) >gi|5458144|emb|CAB49633.1| (AJ248285)
           CO-induced hydrogenase related, subunit X [Pyrococcus
           abyssi]
           Length = 138
           
 Score =  292 bits (739), Expect = 1e-78
 Identities = 138/138 (100%), Positives = 138/138 (100%)

Query: 1   MIRLPLLSTVIKNLFKPPATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGV 60
           MIRLPLLSTVIKNLFKPPATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGV
Sbjct: 1   MIRLPLLSTVIKNLFKPPATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGV 60

Query: 61  FVYLPEIRKVALWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYDEKFIYVTPEEAQE 120
           FVYLPEIRKVALWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYDEKFIYVTPEEAQE
Sbjct: 61  FVYLPEIRKVALWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYDEKFIYVTPEEAQE 120

Query: 121 IKKKLEEKKKAKSKSKAQ 138
           IKKKLEEKKKAKSKSKAQ
Sbjct: 121 IKKKLEEKKKAKSKSKAQ 138


>pir||C71018 probable NADH-plastoquinone oxidoreductase subunit - Pyrococcus
           horikoshii >gi|3257864|dbj|BAA30547.1| (AP000006) 136aa
           long hypothetical NADH-plastoquinone oxidoreductase
           subunit [Pyrococcus horikoshii]
           Length = 136
           
 Score =  266 bits (673), Expect = 8e-71
 Identities = 122/136 (89%), Positives = 130/136 (94%)

Query: 1   MIRLPLLSTVIKNLFKPPATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGV 60
           MIRLPLL TVIKNLFK PATNPFPKTEP+PVP+NFRG+IVYNVDKCVGCRMCVTVCPAGV
Sbjct: 1   MIRLPLLPTVIKNLFKSPATNPFPKTEPIPVPDNFRGRIVYNVDKCVGCRMCVTVCPAGV 60

Query: 61  FVYLPEIRKVALWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYDEKFIYVTPEEAQE 120
           FVY+PEIRKVALWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYDEKFIYVTP++ +E
Sbjct: 61  FVYIPEIRKVALWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYDEKFIYVTPQDVEE 120

Query: 121 IKKKLEEKKKAKSKSK 136
           IKKK EE KKAK KS+
Sbjct: 121 IKKKQEEIKKAKQKSQ 136


>sp|P26525|NUIC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I (FRXB PROTEIN)
           >gi|65736|pir||FEYBQI NADH dehydrogenase (ubiquinone)
           (EC 1.6.5.3) chain ndhI - Synechocystis sp. (strain PCC
           6803) >gi|47556|emb|CAA44375.1| (X62517) NDHI
           [Synechocystis sp.] >gi|1001394|dbj|BAA10884.1| (D64006)
           NADH dehydrogenase subunit NdhI [Synechocystis sp.]
           Length = 193
           
 Score = 81.9 bits (199), Expect = 3e-15
 Identities = 38/110 (34%), Positives = 62/110 (55%), Gaps = 10/110 (9%)

Query: 7   LSTVIKNLFKPPATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGV------ 60
           L+    ++ + P T  +P  + +P  E FRG+I +  DKC+ C +CV VCP  +      
Sbjct: 27  LAVTFDHMSRRPITVQYPYEKLIP-SERFRGRIHFEFDKCIACEVCVRVCPINLPVVDWE 85

Query: 61  ---FVYLPEIRKVALWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYD 107
               V   E++  ++  G C+FC  CV+ CPT  L M++E+ LA+YD++D
Sbjct: 86  FNKAVKKKELKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAYDRHD 135


>pir||T51317 probable CO-induced hydrogenase complex chain CooX [imported] -
           Rhodospirillum rubrum >gi|1515469|gb|AAC45119.1|
           (U65510) CooX [Rhodospirillum rubrum]
           Length = 166
           
 Score = 81.1 bits (197), Expect = 5e-15
 Identities = 42/107 (39%), Positives = 60/107 (55%), Gaps = 5/107 (4%)

Query: 4   LPLLSTVIKNLFKPPATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGV--F 61
           +  LS ++KNL K P+T P P T   P P  +RGK+ ++   CVGC+MC  VCP G   F
Sbjct: 1   MAFLSILMKNLLKGPSTEPLP-TADSPTPAAYRGKVTFDETACVGCKMCEHVCPGGAIRF 59

Query: 62  VYLPEIRKVALWTGRCVFCKQCVDVCPTGALQMSDEFLLA--SYDKY 106
              PE  +  +W   CV C  C   C T A+++S+++ L+    DKY
Sbjct: 60  EERPEGLRFMIWHNTCVNCGLCSHYCLTKAIKLSNDWHLSHLQADKY 106


>emb|CAB44669.1| (AJ242867) NDH-I protein [Anabaena PCC7120]
           Length = 194
           
 Score = 80.8 bits (196), Expect = 7e-15
 Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 10/110 (9%)

Query: 7   LSTVIKNLFKPPATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGVFVYLPE 66
           LS    ++ + P T  +P  + +P  E FRG+I Y  DKC+ C +CV VCP  + V   E
Sbjct: 26  LSVTFDHMRRRPVTVQYPYEKLIP-GERFRGRIHYEFDKCIACEVCVRVCPINLPVVDWE 84

Query: 67  IRKV---------ALWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYD 107
             K          ++  G C+FC  CV+ CPT  L M++E+ LA+YD+++
Sbjct: 85  FDKATKKKKLNHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELATYDRHE 134


>sp|P16432|HYCF_ECOLI FORMATE HYDROGENLYASE SUBUNIT 6 (FHL SUBUNIT 6) (HYDROGENASE-3
           COMPONENT F) >gi|78776|pir||S08624 hydrogenase (EC
           1.18.99.1) 3 chain 6 - Escherichia coli
           >gi|41685|emb|CAA35551.1| (X17506) hycF [Escherichia
           coli] >gi|882613|gb|AAA69230.1| (U29579) formate
           hydrogenlyase subunit 6 [Escherichia coli]
           >gi|1789075|gb|AAC75762.1| (AE000356) probable
           iron-sulfur protein of hydrogenase 3 (part of FHL
           complex) [Escherichia coli K12]
           >gi|1093499|prf||2104213F hycF gene [Escherichia coli]
           Length = 180
           
 Score = 79.2 bits (192), Expect = 2e-14
 Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 6/104 (5%)

Query: 9   TVIKNLFKP-PATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGVFVYLPEI 67
           T IK + K   AT+ +P  EP+ V +NFRGK   N  +C+GC  CV  CP+       ++
Sbjct: 3   TFIKKVIKTGTATSSYP-LEPIAVDKNFRGKPEQNPQQCIGCAACVNACPSNALTVETDL 61

Query: 68  RKVAL-W---TGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYD 107
               L W    G C+FC +C +VCPT A+++S E+ LA + K D
Sbjct: 62  ATGELAWEFNLGHCIFCGRCEEVCPTAAIKLSQEYELAVWKKED 105


>gi|11467871 subunit I of NADH-plastoquinoneoxidoreductase [Nephroselmis
           olivacea] >gi|5880800|gb|AAD54893.1|AF137379_116
           (AF137379) subunit I of NADH-plastoquinoneoxidoreductase
           [Nephroselmis olivacea]
           Length = 173
           
 Score = 78.8 bits (191), Expect = 3e-14
 Identities = 39/110 (35%), Positives = 63/110 (56%), Gaps = 10/110 (9%)

Query: 13  NLFKPPATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGVFV----YLPEIR 68
           ++ + P T  +P  + +P  E FRG+I +  DKC+ C +CV VCP  + V    Y   ++
Sbjct: 32  HMSRRPITIHYPYEKLIP-SERFRGRIHFEFDKCIACEVCVRVCPINLPVVDWDYQKSVK 90

Query: 69  KVALWT-----GRCVFCKQCVDVCPTGALQMSDEFLLASYDKYDEKFIYV 113
           K  L +     G C+FC  CV+ CPT  L M++E+ L+ YD+++  F +V
Sbjct: 91  KKQLRSYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSVYDRHELNFDHV 140


>sp|P05312|NUIC_WHEAT NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I (FRXB PROTEIN)
           >gi|82627|pir||S00636 iron-sulfur protein frxB - wheat
           chloroplast >gi|12342|emb|CAA29900.1| (X06720) frxB gene
           product (AA 1-176) [Triticum aestivum]
           Length = 176
           
 Score = 78.0 bits (189), Expect = 5e-14
 Identities = 38/108 (35%), Positives = 62/108 (57%), Gaps = 10/108 (9%)

Query: 9   TVIKNLFKPPATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGVFV----YL 64
           T + +  + P T  +P  + +  PE FRG+I +  DKC+ C +CV VCP  + V    + 
Sbjct: 30  TTLSHTNRLPITIHYPYEKSI-TPERFRGRIHFEFDKCIACEVCVGVCPIDLPVVDWRFE 88

Query: 65  PEIRKVALWT-----GRCVFCKQCVDVCPTGALQMSDEFLLASYDKYD 107
            +I+K  L       G C+FC  CV+ CPT  L M++E+ L++YD+++
Sbjct: 89  KDIKKKQLLNYSIDFGVCIFCGNCVEYCPTSCLSMTEEYELSTYDRHE 136


>emb|CAA09813.1| (AJ011848) ndhI protein [Hordeum vulgare]
           Length = 180
           
 Score = 77.3 bits (187), Expect = 8e-14
 Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 10/108 (9%)

Query: 9   TVIKNLFKPPATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGVFV----YL 64
           T + +  + P T  +P  + +  PE FRG+I +  DKC+ C +CV VCP  + V    + 
Sbjct: 28  TTLSHTNRLPITIHYPYEKSI-TPERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWRFE 86

Query: 65  PEIRKVALWT-----GRCVFCKQCVDVCPTGALQMSDEFLLASYDKYD 107
            +I++  L       G C+FC  CV+ CPT  L M++E+ L++YD+++
Sbjct: 87  KDIKRKQLLNYSIDFGVCIFCGNCVEYCPTSCLSMTEEYELSTYDRHE 134


>sp|Q00236|NUIC_PLEBO NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I (FRXB PROTEIN)
           >gi|541327|pir||JQ2136 ferredoxin 2[4Fe-4S] B -
           Plectonema boryanum >gi|216819|dbj|BAA00815.1| (D01014)
           NADH-ubiquinone oxidoreductase 23 kDa subunit homolog
           [Plectonema boryanum]
           Length = 194
           
 Score = 76.9 bits (186), Expect = 1e-13
 Identities = 38/110 (34%), Positives = 61/110 (54%), Gaps = 10/110 (9%)

Query: 7   LSTVIKNLFKPPATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGVFVYLPE 66
           LS    ++ + P T  +P  E + + E FRG+I +  DKC+ C +CV VCP  + V   E
Sbjct: 26  LSVTFDHMRRRPITVQYPY-EKLILSERFRGRIHFEFDKCIACEVCVRVCPINLPVVDWE 84

Query: 67  IRK---------VALWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYD 107
             K          ++  G C+FC  CV+ CPT  L M++E+ L++YD+++
Sbjct: 85  FNKETKKKKLNHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHE 134


>gi|11466756 frxB [Marchantia polymorpha] >gi|120536|sp|P06253|NUIC_MARPO
           NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I (FRXB
           PROTEIN) >gi|65734|pir||FELVB ferredoxin 2[4Fe-4S] frxB
           - liverwort (Marchantia polymorpha) chloroplast
           >gi|11727|emb|CAA28138.1| (X04465) frxB [Marchantia
           polymorpha]
           Length = 183
           
 Score = 76.1 bits (184), Expect = 2e-13
 Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 10/99 (10%)

Query: 18  PATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGVFVYLPEIRKV------- 70
           P T  +P  + +P  E FRG+I +  DKC+ C +CV VCP  + V   E++K        
Sbjct: 37  PTTIQYPYEKLIP-SERFRGRIHFEFDKCIACEVCVRVCPINLPVVDWELKKTIKKKQLK 95

Query: 71  --ALWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYD 107
             ++  G C+FC  CV+ CPT  L M++E+ L++Y++++
Sbjct: 96  NYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYNRHE 134


>gi|11466019 NADH dehydrogenase 18kD subunit [Nicotiana tabacum]
           >gi|120539|sp|P06252|NUIC_TOBAC NADH-PLASTOQUINONE
           OXIDOREDUCTASE SUBUNIT I (FRXB PROTEIN)
           >gi|65733|pir||FENTB ferredoxin 2[4Fe-4S] frxB - common
           tobacco chloroplast >gi|100289|pir||S11956 iron-sulfur
           protein frxB - tobacco chloroplast
           >gi|1223671|emb|CAA77397.1| (Z00044) NADH dehydrogenase
           18kD subunit [Nicotiana tabacum]
           >gi|225259|prf||1211235CU ORF 167 [Nicotiana tabacum]
           Length = 167
           
 Score = 74.5 bits (180), Expect = 5e-13
 Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 10/99 (10%)

Query: 18  PATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGVFVY----LPEIRKVALW 73
           P T  +P  E +   E FRG+I +  DKC+ C +CV VCP  + V       +IRK  L 
Sbjct: 37  PVTIQYPY-EKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDIRKKRLL 95

Query: 74  T-----GRCVFCKQCVDVCPTGALQMSDEFLLASYDKYD 107
                 G C+FC  CV+ CPT  L M++E+ L++YD+++
Sbjct: 96  NYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHE 134


>gi|11466442 subunit I of NADH-plastoquinoneoxidoreductase [Mesostigma viride]
           >gi|7259585|gb|AAF43886.1|AF166114_98 (AF166114) subunit
           I of NADH-plastoquinoneoxidoreductase [Mesostigma
           viride]
           Length = 176
           
 Score = 74.1 bits (179), Expect = 7e-13
 Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 10/97 (10%)

Query: 20  TNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGVFV----YLPEIRKVALWT- 74
           T  +P  + +P  E FRG+I +  DKC+ C +CV VCP  + V    +  E +K  L T 
Sbjct: 39  TIQYPYEKLIP-SERFRGRIHFEFDKCIACEVCVRVCPINLPVVNWEFQKEKKKKQLQTY 97

Query: 75  ----GRCVFCKQCVDVCPTGALQMSDEFLLASYDKYD 107
               G C+FC  CV+ CPT  L M++E+ L+ YD+++
Sbjct: 98  SIDFGVCIFCGNCVEYCPTNCLSMTEEYELSVYDRHE 134


>gi|11497585 NADH dehydrogenase 18kD subunit [Spinacia oleracea]
           >gi|7636166|emb|CAB88788.1| (AJ400848) NADH
           dehydrogenase 18kD subunit [Spinacia oleracea]
           Length = 170
           
 Score = 73.0 bits (176), Expect = 2e-12
 Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 10/99 (10%)

Query: 18  PATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGVFVY----LPEIRKVALW 73
           P T  +P  E +   E FRG+I +  DKC+ C +CV  CP  + V       +IRK  L 
Sbjct: 37  PVTIQYPY-EKLITSERFRGRIHFEFDKCIACEVCVRACPIDLPVVDWKLETDIRKKRLL 95

Query: 74  T-----GRCVFCKQCVDVCPTGALQMSDEFLLASYDKYD 107
                 G C+FC  CV+ CPT  L M++E+ L++YD+++
Sbjct: 96  NYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHE 134


>gi|7525089 NADH dehydrogenase subunit [Arabidopsis thaliana]
           >gi|6685681|sp|P56755|NUIC_ARATH NADH-PLASTOQUINONE
           OXIDOREDUCTASE SUBUNIT I >gi|5881750|dbj|BAA84441.1|
           (AP000423) NADH dehydrogenase subunit [Arabidopsis
           thaliana]
           Length = 172
           
 Score = 72.2 bits (174), Expect = 3e-12
 Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 10/99 (10%)

Query: 18  PATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGVFVY----LPEIRKVALW 73
           P T  +P  E +   E FRG+I +  DKC+ C +CV VCP  + V        IRK  L 
Sbjct: 37  PVTIQYPY-EKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETNIRKKRLL 95

Query: 74  T-----GRCVFCKQCVDVCPTGALQMSDEFLLASYDKYD 107
                 G C+FC  CV+ CPT  L M++E+  ++YD+++
Sbjct: 96  NYSIDFGICIFCGNCVEYCPTNCLSMTEEYEFSTYDRHE 134


>gi|11466851 18kDa protein related to a subunit of NADH dehydroghenase [Oryza
           sativa] >gi|120537|sp|P12099|NUIC_ORYSA
           NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I (FRXB
           PROTEIN) >gi|65735|pir||FERZB ferredoxin 2[4Fe-4S] frxB
           - rice chloroplast >gi|12054|emb|CAA33909.1| (X15901)
           18kDa protein related to a subunit of NADH
           dehydroghenase [Oryza sativa] >gi|226675|prf||1603356DC
           NADH dehydrogenase-like 18kD protein [Oryza sativa]
           Length = 178
           
 Score = 72.2 bits (174), Expect = 3e-12
 Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 10/99 (10%)

Query: 18  PATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGV----FVYLPEIRKVALW 73
           P T  +P  + +   E FRG+I +  DKC+ C +CV VCP  +    + +  +I++  L 
Sbjct: 35  PITIHYPYEKSI-TSERFRGRIHFEFDKCIACEVCVRVCPIDLPLVDWRFEKDIKRKQLL 93

Query: 74  T-----GRCVFCKQCVDVCPTGALQMSDEFLLASYDKYD 107
                 G C+FC  CV+ CPT  L M++E+ L++YD+++
Sbjct: 94  NYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHE 132


>gi|11467259 NADH dehydrogenase subunit [Zea mays]
           >gi|1171861|sp|P46722|NUIC_MAIZE NADH-PLASTOQUINONE
           OXIDOREDUCTASE SUBUNIT I (FRXB PROTEIN)
           >gi|1363565|pir||S58619 ferredoxin 2[4Fe-4S] ndhI -
           maize chloroplast >gi|902288|emb|CAA60352.1| (X86563)
           NADH dehydrogenase subunit [Zea mays]
           Length = 180
           
 Score = 72.2 bits (174), Expect = 3e-12
 Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 10/99 (10%)

Query: 18  PATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGV----FVYLPEIRKVALW 73
           P T  +P  + +   E FRG+I +  DKC+ C +CV VCP  +    + +  +I++  L 
Sbjct: 37  PITIHYPYEKSI-TSERFRGRIHFEFDKCIACEVCVRVCPIDLPLVDWRFEKDIKRKQLL 95

Query: 74  T-----GRCVFCKQCVDVCPTGALQMSDEFLLASYDKYD 107
                 G C+FC  CV+ CPT  L M++E+ L++YD+++
Sbjct: 96  NYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHE 134


>pir||G72281 glutamate synthase, beta subunit - Thermotoga maritima  (strain
           MSB8) >gi|4981770|gb|AAD36292.1|AE001778_13 (AE001778)
           glutamate synthase, beta subunit [Thermotoga maritima]
           Length = 618
           
 Score = 71.4 bits (172), Expect = 5e-12
 Identities = 44/130 (33%), Positives = 65/130 (49%), Gaps = 12/130 (9%)

Query: 12  KNLFKPPATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCP--AGVFVYLPEI-- 67
           K L + P T   P        E +RG  V +  KC+GC  C  +CP  A   V +P++  
Sbjct: 22  KFLVRKPVTIEVPNKIRREASERYRGFHVNDWGKCIGCGTCAKICPTDAITMVEVPDLTQ 81

Query: 68  ------RKVALWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYDEKFIYVTPEEAQEI 121
                 ++  +  GRC FC  CVD+C TG+L+M+ E++  S D   E FI++  ++    
Sbjct: 82  EDGKLPQRPVIDYGRCSFCALCVDICTTGSLKMTREYIHISED--PEDFIFMPTDKGLNA 139

Query: 122 KKKLEEKKKA 131
           KK L E  KA
Sbjct: 140 KKGLYEFGKA 149


>emb|CAB67224.1| (AJ271079) NADH-plastoquinone oxidoreductase subunit I [Oenothera
           elata subsp. hookeri]
           Length = 165
           
 Score = 71.4 bits (172), Expect = 5e-12
 Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 10/99 (10%)

Query: 18  PATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGVFVY----LPEIRKVALW 73
           P T  +P  E +   E FRG+I +  DKC+ C +CV VCP  + V        +RK  L 
Sbjct: 37  PVTIQYPY-EKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETGVRKKRLL 95

Query: 74  T-----GRCVFCKQCVDVCPTGALQMSDEFLLASYDKYD 107
                 G C+FC  CV+ CPT  L M++E+ L+ YD+++
Sbjct: 96  NYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSIYDRHE 134


>pir||A71019 probable NADH-plastoquinone oxidoreductase subunit - Pyrococcus
           horikoshii >gi|3257870|dbj|BAA30553.1| (AP000006) 206aa
           long hypothetical NADH-plastoquinone oxidoreductase
           subunit [Pyrococcus horikoshii]
           Length = 206
           
 Score = 70.6 bits (170), Expect = 8e-12
 Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 13/124 (10%)

Query: 11  IKNLFKPPATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGVFVY------- 63
           +K LFK P T   P  +  P P+ +RG    +  KC+GC  C  +CPA            
Sbjct: 27  LKYLFKKPVTIKIPDEKIEPAPK-YRGFHTLDWKKCIGCNFCGQICPARAIEMTWIEVNG 85

Query: 64  -LPEIRKVALWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYDE----KFIYVTPEEA 118
            L +     +  GRC FC+ CVDVCPTGAL   + ++L +  K +E     ++ + P++ 
Sbjct: 86  KLEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGKEEELQLFDWVPLPPDKF 145

Query: 119 QEIK 122
           +E++
Sbjct: 146 KELQ 149


>pir||D75114 NADH dehydrogenase I, chain I PAB0496 - Pyrococcus abyssi  (strain
           Orsay) >gi|5458140|emb|CAB49629.1| (AJ248285) NADH
           dehydrogenase I, SUBUNIT I [Pyrococcus abyssi]
           Length = 214
           
 Score = 68.7 bits (165), Expect = 3e-11
 Identities = 39/131 (29%), Positives = 67/131 (50%), Gaps = 17/131 (12%)

Query: 11  IKNLFKPPATN--PFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGVFVY----- 63
           +K LFK P T   P+ K +P P    +RG    +  KC+GC  C  +CPA          
Sbjct: 27  LKYLFKKPVTIKIPYEKIDPAP---KYRGFHTLDWKKCIGCNFCGQICPARAIEMTWIEV 83

Query: 64  ---LPEIRKVALWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYDE----KFIYVTPE 116
              + +     +  GRC FC+ CVDVCPTGAL   + ++L +    +E     ++ + P+
Sbjct: 84  DGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEELQLFDWVPLPPD 143

Query: 117 EAQEIKKKLEE 127
           + +E++++ ++
Sbjct: 144 KFRELQEEYKD 154


>pir||F70413 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoI1 -
           Aquifex aeolicus >gi|2983739|gb|AAC07300.1| (AE000734)
           NADH dehydrogenase I chain I [Aquifex aeolicus]
           Length = 201
           
 Score = 67.1 bits (161), Expect = 9e-11
 Identities = 44/133 (33%), Positives = 58/133 (43%), Gaps = 32/133 (24%)

Query: 7   LSTVIKNLFKPPATNPFPKTEPVPVPENFRGKIVYNV----------------------D 44
           LS  +KNL + P T  +PK +  P P+ FRG   + V                       
Sbjct: 27  LSVTLKNLLRRPITTEYPKEKLTP-PKRFRGAHGHYVWDGTEPDSLKAIEKFMSYEKAKS 85

Query: 45  KCVGCRMCVTVCPAGVF-----VYLPEIRKVALWTG----RCVFCKQCVDVCPTGALQMS 95
           +CV C MC T CP         V LP  +K  +        C+FC  CVD CP G L M+
Sbjct: 86  RCVACYMCQTACPMPTLFRIEAVQLPNGKKKVVRFDMNLLNCLFCGLCVDACPVGCLTMT 145

Query: 96  DEFLLASYDKYDE 108
           D F LA+Y + +E
Sbjct: 146 DIFELANYSRRNE 158


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.138    0.431 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55440766
Number of Sequences: 2977
Number of extensions: 2417358
Number of successful extensions: 16317
Number of sequences better than 1.0e-10: 22
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 16246
Number of HSP's gapped (non-prelim): 24
length of query: 138
length of database: 189,106,746
effective HSP length: 49
effective length of query: 89
effective length of database: 159,780,883
effective search space: 14220498587
effective search space used: 14220498587
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 161 (67.1 bits)