BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1894 (cooX-like) DE:CO-induced hydrogenase related, subunit
X
(138 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75114 co-induced hydrogenase related, chain X PAB1894 - Py... 292 1e-78
pir||C71018 probable NADH-plastoquinone oxidoreductase subunit -... 266 8e-71
sp|P26525|NUIC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I... 82 3e-15
pir||T51317 probable CO-induced hydrogenase complex chain CooX [... 81 5e-15
emb|CAB44669.1| (AJ242867) NDH-I protein [Anabaena PCC7120] 81 7e-15
sp|P16432|HYCF_ECOLI FORMATE HYDROGENLYASE SUBUNIT 6 (FHL SUBUNI... 79 2e-14
gi|11467871 subunit I of NADH-plastoquinoneoxidoreductase [Nephr... 79 3e-14
sp|P05312|NUIC_WHEAT NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I... 78 5e-14
emb|CAA09813.1| (AJ011848) ndhI protein [Hordeum vulgare] 77 8e-14
sp|Q00236|NUIC_PLEBO NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I... 77 1e-13
gi|11466756 frxB [Marchantia polymorpha] >gi|120536|sp|P06253|NU... 76 2e-13
gi|11466019 NADH dehydrogenase 18kD subunit [Nicotiana tabacum] ... 75 5e-13
gi|11466442 subunit I of NADH-plastoquinoneoxidoreductase [Mesos... 74 7e-13
gi|11497585 NADH dehydrogenase 18kD subunit [Spinacia oleracea] ... 73 2e-12
gi|7525089 NADH dehydrogenase subunit [Arabidopsis thaliana] >gi... 72 3e-12
gi|11466851 18kDa protein related to a subunit of NADH dehydrogh... 72 3e-12
gi|11467259 NADH dehydrogenase subunit [Zea mays] >gi|1171861|sp... 72 3e-12
pir||G72281 glutamate synthase, beta subunit - Thermotoga mariti... 71 5e-12
emb|CAB67224.1| (AJ271079) NADH-plastoquinone oxidoreductase sub... 71 5e-12
pir||A71019 probable NADH-plastoquinone oxidoreductase subunit -... 71 8e-12
pir||D75114 NADH dehydrogenase I, chain I PAB0496 - Pyrococcus a... 69 3e-11
pir||F70413 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain... 67 9e-11
>pir||H75114 co-induced hydrogenase related, chain X PAB1894 - Pyrococcus abyssi
(strain Orsay) >gi|5458144|emb|CAB49633.1| (AJ248285)
CO-induced hydrogenase related, subunit X [Pyrococcus
abyssi]
Length = 138
Score = 292 bits (739), Expect = 1e-78
Identities = 138/138 (100%), Positives = 138/138 (100%)
Query: 1 MIRLPLLSTVIKNLFKPPATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGV 60
MIRLPLLSTVIKNLFKPPATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGV
Sbjct: 1 MIRLPLLSTVIKNLFKPPATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGV 60
Query: 61 FVYLPEIRKVALWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYDEKFIYVTPEEAQE 120
FVYLPEIRKVALWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYDEKFIYVTPEEAQE
Sbjct: 61 FVYLPEIRKVALWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYDEKFIYVTPEEAQE 120
Query: 121 IKKKLEEKKKAKSKSKAQ 138
IKKKLEEKKKAKSKSKAQ
Sbjct: 121 IKKKLEEKKKAKSKSKAQ 138
>pir||C71018 probable NADH-plastoquinone oxidoreductase subunit - Pyrococcus
horikoshii >gi|3257864|dbj|BAA30547.1| (AP000006) 136aa
long hypothetical NADH-plastoquinone oxidoreductase
subunit [Pyrococcus horikoshii]
Length = 136
Score = 266 bits (673), Expect = 8e-71
Identities = 122/136 (89%), Positives = 130/136 (94%)
Query: 1 MIRLPLLSTVIKNLFKPPATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGV 60
MIRLPLL TVIKNLFK PATNPFPKTEP+PVP+NFRG+IVYNVDKCVGCRMCVTVCPAGV
Sbjct: 1 MIRLPLLPTVIKNLFKSPATNPFPKTEPIPVPDNFRGRIVYNVDKCVGCRMCVTVCPAGV 60
Query: 61 FVYLPEIRKVALWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYDEKFIYVTPEEAQE 120
FVY+PEIRKVALWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYDEKFIYVTP++ +E
Sbjct: 61 FVYIPEIRKVALWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYDEKFIYVTPQDVEE 120
Query: 121 IKKKLEEKKKAKSKSK 136
IKKK EE KKAK KS+
Sbjct: 121 IKKKQEEIKKAKQKSQ 136
>sp|P26525|NUIC_SYNY3 NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I (FRXB PROTEIN)
>gi|65736|pir||FEYBQI NADH dehydrogenase (ubiquinone)
(EC 1.6.5.3) chain ndhI - Synechocystis sp. (strain PCC
6803) >gi|47556|emb|CAA44375.1| (X62517) NDHI
[Synechocystis sp.] >gi|1001394|dbj|BAA10884.1| (D64006)
NADH dehydrogenase subunit NdhI [Synechocystis sp.]
Length = 193
Score = 81.9 bits (199), Expect = 3e-15
Identities = 38/110 (34%), Positives = 62/110 (55%), Gaps = 10/110 (9%)
Query: 7 LSTVIKNLFKPPATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGV------ 60
L+ ++ + P T +P + +P E FRG+I + DKC+ C +CV VCP +
Sbjct: 27 LAVTFDHMSRRPITVQYPYEKLIP-SERFRGRIHFEFDKCIACEVCVRVCPINLPVVDWE 85
Query: 61 ---FVYLPEIRKVALWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYD 107
V E++ ++ G C+FC CV+ CPT L M++E+ LA+YD++D
Sbjct: 86 FNKAVKKKELKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAYDRHD 135
>pir||T51317 probable CO-induced hydrogenase complex chain CooX [imported] -
Rhodospirillum rubrum >gi|1515469|gb|AAC45119.1|
(U65510) CooX [Rhodospirillum rubrum]
Length = 166
Score = 81.1 bits (197), Expect = 5e-15
Identities = 42/107 (39%), Positives = 60/107 (55%), Gaps = 5/107 (4%)
Query: 4 LPLLSTVIKNLFKPPATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGV--F 61
+ LS ++KNL K P+T P P T P P +RGK+ ++ CVGC+MC VCP G F
Sbjct: 1 MAFLSILMKNLLKGPSTEPLP-TADSPTPAAYRGKVTFDETACVGCKMCEHVCPGGAIRF 59
Query: 62 VYLPEIRKVALWTGRCVFCKQCVDVCPTGALQMSDEFLLA--SYDKY 106
PE + +W CV C C C T A+++S+++ L+ DKY
Sbjct: 60 EERPEGLRFMIWHNTCVNCGLCSHYCLTKAIKLSNDWHLSHLQADKY 106
>emb|CAB44669.1| (AJ242867) NDH-I protein [Anabaena PCC7120]
Length = 194
Score = 80.8 bits (196), Expect = 7e-15
Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 10/110 (9%)
Query: 7 LSTVIKNLFKPPATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGVFVYLPE 66
LS ++ + P T +P + +P E FRG+I Y DKC+ C +CV VCP + V E
Sbjct: 26 LSVTFDHMRRRPVTVQYPYEKLIP-GERFRGRIHYEFDKCIACEVCVRVCPINLPVVDWE 84
Query: 67 IRKV---------ALWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYD 107
K ++ G C+FC CV+ CPT L M++E+ LA+YD+++
Sbjct: 85 FDKATKKKKLNHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELATYDRHE 134
>sp|P16432|HYCF_ECOLI FORMATE HYDROGENLYASE SUBUNIT 6 (FHL SUBUNIT 6) (HYDROGENASE-3
COMPONENT F) >gi|78776|pir||S08624 hydrogenase (EC
1.18.99.1) 3 chain 6 - Escherichia coli
>gi|41685|emb|CAA35551.1| (X17506) hycF [Escherichia
coli] >gi|882613|gb|AAA69230.1| (U29579) formate
hydrogenlyase subunit 6 [Escherichia coli]
>gi|1789075|gb|AAC75762.1| (AE000356) probable
iron-sulfur protein of hydrogenase 3 (part of FHL
complex) [Escherichia coli K12]
>gi|1093499|prf||2104213F hycF gene [Escherichia coli]
Length = 180
Score = 79.2 bits (192), Expect = 2e-14
Identities = 41/104 (39%), Positives = 59/104 (56%), Gaps = 6/104 (5%)
Query: 9 TVIKNLFKP-PATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGVFVYLPEI 67
T IK + K AT+ +P EP+ V +NFRGK N +C+GC CV CP+ ++
Sbjct: 3 TFIKKVIKTGTATSSYP-LEPIAVDKNFRGKPEQNPQQCIGCAACVNACPSNALTVETDL 61
Query: 68 RKVAL-W---TGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYD 107
L W G C+FC +C +VCPT A+++S E+ LA + K D
Sbjct: 62 ATGELAWEFNLGHCIFCGRCEEVCPTAAIKLSQEYELAVWKKED 105
>gi|11467871 subunit I of NADH-plastoquinoneoxidoreductase [Nephroselmis
olivacea] >gi|5880800|gb|AAD54893.1|AF137379_116
(AF137379) subunit I of NADH-plastoquinoneoxidoreductase
[Nephroselmis olivacea]
Length = 173
Score = 78.8 bits (191), Expect = 3e-14
Identities = 39/110 (35%), Positives = 63/110 (56%), Gaps = 10/110 (9%)
Query: 13 NLFKPPATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGVFV----YLPEIR 68
++ + P T +P + +P E FRG+I + DKC+ C +CV VCP + V Y ++
Sbjct: 32 HMSRRPITIHYPYEKLIP-SERFRGRIHFEFDKCIACEVCVRVCPINLPVVDWDYQKSVK 90
Query: 69 KVALWT-----GRCVFCKQCVDVCPTGALQMSDEFLLASYDKYDEKFIYV 113
K L + G C+FC CV+ CPT L M++E+ L+ YD+++ F +V
Sbjct: 91 KKQLRSYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSVYDRHELNFDHV 140
>sp|P05312|NUIC_WHEAT NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I (FRXB PROTEIN)
>gi|82627|pir||S00636 iron-sulfur protein frxB - wheat
chloroplast >gi|12342|emb|CAA29900.1| (X06720) frxB gene
product (AA 1-176) [Triticum aestivum]
Length = 176
Score = 78.0 bits (189), Expect = 5e-14
Identities = 38/108 (35%), Positives = 62/108 (57%), Gaps = 10/108 (9%)
Query: 9 TVIKNLFKPPATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGVFV----YL 64
T + + + P T +P + + PE FRG+I + DKC+ C +CV VCP + V +
Sbjct: 30 TTLSHTNRLPITIHYPYEKSI-TPERFRGRIHFEFDKCIACEVCVGVCPIDLPVVDWRFE 88
Query: 65 PEIRKVALWT-----GRCVFCKQCVDVCPTGALQMSDEFLLASYDKYD 107
+I+K L G C+FC CV+ CPT L M++E+ L++YD+++
Sbjct: 89 KDIKKKQLLNYSIDFGVCIFCGNCVEYCPTSCLSMTEEYELSTYDRHE 136
>emb|CAA09813.1| (AJ011848) ndhI protein [Hordeum vulgare]
Length = 180
Score = 77.3 bits (187), Expect = 8e-14
Identities = 37/108 (34%), Positives = 62/108 (57%), Gaps = 10/108 (9%)
Query: 9 TVIKNLFKPPATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGVFV----YL 64
T + + + P T +P + + PE FRG+I + DKC+ C +CV VCP + V +
Sbjct: 28 TTLSHTNRLPITIHYPYEKSI-TPERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWRFE 86
Query: 65 PEIRKVALWT-----GRCVFCKQCVDVCPTGALQMSDEFLLASYDKYD 107
+I++ L G C+FC CV+ CPT L M++E+ L++YD+++
Sbjct: 87 KDIKRKQLLNYSIDFGVCIFCGNCVEYCPTSCLSMTEEYELSTYDRHE 134
>sp|Q00236|NUIC_PLEBO NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I (FRXB PROTEIN)
>gi|541327|pir||JQ2136 ferredoxin 2[4Fe-4S] B -
Plectonema boryanum >gi|216819|dbj|BAA00815.1| (D01014)
NADH-ubiquinone oxidoreductase 23 kDa subunit homolog
[Plectonema boryanum]
Length = 194
Score = 76.9 bits (186), Expect = 1e-13
Identities = 38/110 (34%), Positives = 61/110 (54%), Gaps = 10/110 (9%)
Query: 7 LSTVIKNLFKPPATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGVFVYLPE 66
LS ++ + P T +P E + + E FRG+I + DKC+ C +CV VCP + V E
Sbjct: 26 LSVTFDHMRRRPITVQYPY-EKLILSERFRGRIHFEFDKCIACEVCVRVCPINLPVVDWE 84
Query: 67 IRK---------VALWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYD 107
K ++ G C+FC CV+ CPT L M++E+ L++YD+++
Sbjct: 85 FNKETKKKKLNHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHE 134
>gi|11466756 frxB [Marchantia polymorpha] >gi|120536|sp|P06253|NUIC_MARPO
NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I (FRXB
PROTEIN) >gi|65734|pir||FELVB ferredoxin 2[4Fe-4S] frxB
- liverwort (Marchantia polymorpha) chloroplast
>gi|11727|emb|CAA28138.1| (X04465) frxB [Marchantia
polymorpha]
Length = 183
Score = 76.1 bits (184), Expect = 2e-13
Identities = 35/99 (35%), Positives = 58/99 (58%), Gaps = 10/99 (10%)
Query: 18 PATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGVFVYLPEIRKV------- 70
P T +P + +P E FRG+I + DKC+ C +CV VCP + V E++K
Sbjct: 37 PTTIQYPYEKLIP-SERFRGRIHFEFDKCIACEVCVRVCPINLPVVDWELKKTIKKKQLK 95
Query: 71 --ALWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYD 107
++ G C+FC CV+ CPT L M++E+ L++Y++++
Sbjct: 96 NYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYNRHE 134
>gi|11466019 NADH dehydrogenase 18kD subunit [Nicotiana tabacum]
>gi|120539|sp|P06252|NUIC_TOBAC NADH-PLASTOQUINONE
OXIDOREDUCTASE SUBUNIT I (FRXB PROTEIN)
>gi|65733|pir||FENTB ferredoxin 2[4Fe-4S] frxB - common
tobacco chloroplast >gi|100289|pir||S11956 iron-sulfur
protein frxB - tobacco chloroplast
>gi|1223671|emb|CAA77397.1| (Z00044) NADH dehydrogenase
18kD subunit [Nicotiana tabacum]
>gi|225259|prf||1211235CU ORF 167 [Nicotiana tabacum]
Length = 167
Score = 74.5 bits (180), Expect = 5e-13
Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 10/99 (10%)
Query: 18 PATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGVFVY----LPEIRKVALW 73
P T +P E + E FRG+I + DKC+ C +CV VCP + V +IRK L
Sbjct: 37 PVTIQYPY-EKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETDIRKKRLL 95
Query: 74 T-----GRCVFCKQCVDVCPTGALQMSDEFLLASYDKYD 107
G C+FC CV+ CPT L M++E+ L++YD+++
Sbjct: 96 NYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHE 134
>gi|11466442 subunit I of NADH-plastoquinoneoxidoreductase [Mesostigma viride]
>gi|7259585|gb|AAF43886.1|AF166114_98 (AF166114) subunit
I of NADH-plastoquinoneoxidoreductase [Mesostigma
viride]
Length = 176
Score = 74.1 bits (179), Expect = 7e-13
Identities = 37/97 (38%), Positives = 56/97 (57%), Gaps = 10/97 (10%)
Query: 20 TNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGVFV----YLPEIRKVALWT- 74
T +P + +P E FRG+I + DKC+ C +CV VCP + V + E +K L T
Sbjct: 39 TIQYPYEKLIP-SERFRGRIHFEFDKCIACEVCVRVCPINLPVVNWEFQKEKKKKQLQTY 97
Query: 75 ----GRCVFCKQCVDVCPTGALQMSDEFLLASYDKYD 107
G C+FC CV+ CPT L M++E+ L+ YD+++
Sbjct: 98 SIDFGVCIFCGNCVEYCPTNCLSMTEEYELSVYDRHE 134
>gi|11497585 NADH dehydrogenase 18kD subunit [Spinacia oleracea]
>gi|7636166|emb|CAB88788.1| (AJ400848) NADH
dehydrogenase 18kD subunit [Spinacia oleracea]
Length = 170
Score = 73.0 bits (176), Expect = 2e-12
Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 10/99 (10%)
Query: 18 PATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGVFVY----LPEIRKVALW 73
P T +P E + E FRG+I + DKC+ C +CV CP + V +IRK L
Sbjct: 37 PVTIQYPY-EKLITSERFRGRIHFEFDKCIACEVCVRACPIDLPVVDWKLETDIRKKRLL 95
Query: 74 T-----GRCVFCKQCVDVCPTGALQMSDEFLLASYDKYD 107
G C+FC CV+ CPT L M++E+ L++YD+++
Sbjct: 96 NYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHE 134
>gi|7525089 NADH dehydrogenase subunit [Arabidopsis thaliana]
>gi|6685681|sp|P56755|NUIC_ARATH NADH-PLASTOQUINONE
OXIDOREDUCTASE SUBUNIT I >gi|5881750|dbj|BAA84441.1|
(AP000423) NADH dehydrogenase subunit [Arabidopsis
thaliana]
Length = 172
Score = 72.2 bits (174), Expect = 3e-12
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 10/99 (10%)
Query: 18 PATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGVFVY----LPEIRKVALW 73
P T +P E + E FRG+I + DKC+ C +CV VCP + V IRK L
Sbjct: 37 PVTIQYPY-EKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETNIRKKRLL 95
Query: 74 T-----GRCVFCKQCVDVCPTGALQMSDEFLLASYDKYD 107
G C+FC CV+ CPT L M++E+ ++YD+++
Sbjct: 96 NYSIDFGICIFCGNCVEYCPTNCLSMTEEYEFSTYDRHE 134
>gi|11466851 18kDa protein related to a subunit of NADH dehydroghenase [Oryza
sativa] >gi|120537|sp|P12099|NUIC_ORYSA
NADH-PLASTOQUINONE OXIDOREDUCTASE SUBUNIT I (FRXB
PROTEIN) >gi|65735|pir||FERZB ferredoxin 2[4Fe-4S] frxB
- rice chloroplast >gi|12054|emb|CAA33909.1| (X15901)
18kDa protein related to a subunit of NADH
dehydroghenase [Oryza sativa] >gi|226675|prf||1603356DC
NADH dehydrogenase-like 18kD protein [Oryza sativa]
Length = 178
Score = 72.2 bits (174), Expect = 3e-12
Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 10/99 (10%)
Query: 18 PATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGV----FVYLPEIRKVALW 73
P T +P + + E FRG+I + DKC+ C +CV VCP + + + +I++ L
Sbjct: 35 PITIHYPYEKSI-TSERFRGRIHFEFDKCIACEVCVRVCPIDLPLVDWRFEKDIKRKQLL 93
Query: 74 T-----GRCVFCKQCVDVCPTGALQMSDEFLLASYDKYD 107
G C+FC CV+ CPT L M++E+ L++YD+++
Sbjct: 94 NYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHE 132
>gi|11467259 NADH dehydrogenase subunit [Zea mays]
>gi|1171861|sp|P46722|NUIC_MAIZE NADH-PLASTOQUINONE
OXIDOREDUCTASE SUBUNIT I (FRXB PROTEIN)
>gi|1363565|pir||S58619 ferredoxin 2[4Fe-4S] ndhI -
maize chloroplast >gi|902288|emb|CAA60352.1| (X86563)
NADH dehydrogenase subunit [Zea mays]
Length = 180
Score = 72.2 bits (174), Expect = 3e-12
Identities = 34/99 (34%), Positives = 57/99 (57%), Gaps = 10/99 (10%)
Query: 18 PATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGV----FVYLPEIRKVALW 73
P T +P + + E FRG+I + DKC+ C +CV VCP + + + +I++ L
Sbjct: 37 PITIHYPYEKSI-TSERFRGRIHFEFDKCIACEVCVRVCPIDLPLVDWRFEKDIKRKQLL 95
Query: 74 T-----GRCVFCKQCVDVCPTGALQMSDEFLLASYDKYD 107
G C+FC CV+ CPT L M++E+ L++YD+++
Sbjct: 96 NYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHE 134
>pir||G72281 glutamate synthase, beta subunit - Thermotoga maritima (strain
MSB8) >gi|4981770|gb|AAD36292.1|AE001778_13 (AE001778)
glutamate synthase, beta subunit [Thermotoga maritima]
Length = 618
Score = 71.4 bits (172), Expect = 5e-12
Identities = 44/130 (33%), Positives = 65/130 (49%), Gaps = 12/130 (9%)
Query: 12 KNLFKPPATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCP--AGVFVYLPEI-- 67
K L + P T P E +RG V + KC+GC C +CP A V +P++
Sbjct: 22 KFLVRKPVTIEVPNKIRREASERYRGFHVNDWGKCIGCGTCAKICPTDAITMVEVPDLTQ 81
Query: 68 ------RKVALWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYDEKFIYVTPEEAQEI 121
++ + GRC FC CVD+C TG+L+M+ E++ S D E FI++ ++
Sbjct: 82 EDGKLPQRPVIDYGRCSFCALCVDICTTGSLKMTREYIHISED--PEDFIFMPTDKGLNA 139
Query: 122 KKKLEEKKKA 131
KK L E KA
Sbjct: 140 KKGLYEFGKA 149
>emb|CAB67224.1| (AJ271079) NADH-plastoquinone oxidoreductase subunit I [Oenothera
elata subsp. hookeri]
Length = 165
Score = 71.4 bits (172), Expect = 5e-12
Identities = 37/99 (37%), Positives = 54/99 (54%), Gaps = 10/99 (10%)
Query: 18 PATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGVFVY----LPEIRKVALW 73
P T +P E + E FRG+I + DKC+ C +CV VCP + V +RK L
Sbjct: 37 PVTIQYPY-EKLITSERFRGRIHFEFDKCIACEVCVRVCPIDLPVVDWKLETGVRKKRLL 95
Query: 74 T-----GRCVFCKQCVDVCPTGALQMSDEFLLASYDKYD 107
G C+FC CV+ CPT L M++E+ L+ YD+++
Sbjct: 96 NYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSIYDRHE 134
>pir||A71019 probable NADH-plastoquinone oxidoreductase subunit - Pyrococcus
horikoshii >gi|3257870|dbj|BAA30553.1| (AP000006) 206aa
long hypothetical NADH-plastoquinone oxidoreductase
subunit [Pyrococcus horikoshii]
Length = 206
Score = 70.6 bits (170), Expect = 8e-12
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 13/124 (10%)
Query: 11 IKNLFKPPATNPFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGVFVY------- 63
+K LFK P T P + P P+ +RG + KC+GC C +CPA
Sbjct: 27 LKYLFKKPVTIKIPDEKIEPAPK-YRGFHTLDWKKCIGCNFCGQICPARAIEMTWIEVNG 85
Query: 64 -LPEIRKVALWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYDE----KFIYVTPEEA 118
L + + GRC FC+ CVDVCPTGAL + ++L + K +E ++ + P++
Sbjct: 86 KLEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGKEEELQLFDWVPLPPDKF 145
Query: 119 QEIK 122
+E++
Sbjct: 146 KELQ 149
>pir||D75114 NADH dehydrogenase I, chain I PAB0496 - Pyrococcus abyssi (strain
Orsay) >gi|5458140|emb|CAB49629.1| (AJ248285) NADH
dehydrogenase I, SUBUNIT I [Pyrococcus abyssi]
Length = 214
Score = 68.7 bits (165), Expect = 3e-11
Identities = 39/131 (29%), Positives = 67/131 (50%), Gaps = 17/131 (12%)
Query: 11 IKNLFKPPATN--PFPKTEPVPVPENFRGKIVYNVDKCVGCRMCVTVCPAGVFVY----- 63
+K LFK P T P+ K +P P +RG + KC+GC C +CPA
Sbjct: 27 LKYLFKKPVTIKIPYEKIDPAP---KYRGFHTLDWKKCIGCNFCGQICPARAIEMTWIEV 83
Query: 64 ---LPEIRKVALWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYDE----KFIYVTPE 116
+ + + GRC FC+ CVDVCPTGAL + ++L + +E ++ + P+
Sbjct: 84 DGKMEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEEELQLFDWVPLPPD 143
Query: 117 EAQEIKKKLEE 127
+ +E++++ ++
Sbjct: 144 KFRELQEEYKD 154
>pir||F70413 NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) I chain nuoI1 -
Aquifex aeolicus >gi|2983739|gb|AAC07300.1| (AE000734)
NADH dehydrogenase I chain I [Aquifex aeolicus]
Length = 201
Score = 67.1 bits (161), Expect = 9e-11
Identities = 44/133 (33%), Positives = 58/133 (43%), Gaps = 32/133 (24%)
Query: 7 LSTVIKNLFKPPATNPFPKTEPVPVPENFRGKIVYNV----------------------D 44
LS +KNL + P T +PK + P P+ FRG + V
Sbjct: 27 LSVTLKNLLRRPITTEYPKEKLTP-PKRFRGAHGHYVWDGTEPDSLKAIEKFMSYEKAKS 85
Query: 45 KCVGCRMCVTVCPAGVF-----VYLPEIRKVALWTG----RCVFCKQCVDVCPTGALQMS 95
+CV C MC T CP V LP +K + C+FC CVD CP G L M+
Sbjct: 86 RCVACYMCQTACPMPTLFRIEAVQLPNGKKKVVRFDMNLLNCLFCGLCVDACPVGCLTMT 145
Query: 96 DEFLLASYDKYDE 108
D F LA+Y + +E
Sbjct: 146 DIFELANYSRRNE 158
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.138 0.431
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55440766
Number of Sequences: 2977
Number of extensions: 2417358
Number of successful extensions: 16317
Number of sequences better than 1.0e-10: 22
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 16246
Number of HSP's gapped (non-prelim): 24
length of query: 138
length of database: 189,106,746
effective HSP length: 49
effective length of query: 89
effective length of database: 159,780,883
effective search space: 14220498587
effective search space used: 14220498587
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 161 (67.1 bits)