BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1895 (PAB1895) DE:Hypothetical protein
(429 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75114 hypothetical protein PAB1895 - Pyrococcus abyssi (st... 866 0.0
pir||D71018 hypothetical protein PH1441 - Pyrococcus horikoshii ... 721 0.0
pir||F72512 hypothetical protein APE2075 - Aeropyrum pernix (str... 210 2e-53
sp|Q60377|Y066_METJA HYPOTHETICAL PROTEIN MJ0066 >gi|2128107|pir... 96 6e-19
sp|Q58383|Y973_METJA HYPOTHETICAL PROTEIN MJ0973 >gi|2128610|pir... 94 2e-18
pir||B75215 5'-adenylylphosphosulfate reductase related protein ... 89 1e-16
pir||E71451 hypothetical protein PH0268 - Pyrococcus horikoshii ... 87 5e-16
>pir||G75114 hypothetical protein PAB1895 - Pyrococcus abyssi (strain Orsay)
>gi|5458143|emb|CAB49632.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 429
Score = 866 bits (2213), Expect = 0.0
Identities = 429/429 (100%), Positives = 429/429 (100%)
Query: 1 MFNIIVRARKDAKAIQYINERNYGGYLKVSSLGGGRKLSEVEDNLREALSDPYIPIFLFG 60
MFNIIVRARKDAKAIQYINERNYGGYLKVSSLGGGRKLSEVEDNLREALSDPYIPIFLFG
Sbjct: 1 MFNIIVRARKDAKAIQYINERNYGGYLKVSSLGGGRKLSEVEDNLREALSDPYIPIFLFG 60
Query: 61 EKEKELANEVIKEVNKPSFIRILRTKKVRNMRVDELYENIEDIKARFRLGVEWVENLKAY 120
EKEKELANEVIKEVNKPSFIRILRTKKVRNMRVDELYENIEDIKARFRLGVEWVENLKAY
Sbjct: 61 EKEKELANEVIKEVNKPSFIRILRTKKVRNMRVDELYENIEDIKARFRLGVEWVENLKAY 120
Query: 121 KFEPENPIGLEVNPDYDIYFALGEGFRKNMIDLLGIDPGDVALVLRKTMNVEEYYSGPHR 180
KFEPENPIGLEVNPDYDIYFALGEGFRKNMIDLLGIDPGDVALVLRKTMNVEEYYSGPHR
Sbjct: 121 KFEPENPIGLEVNPDYDIYFALGEGFRKNMIDLLGIDPGDVALVLRKTMNVEEYYSGPHR 180
Query: 181 IAEVSKIIGRPTEVKWRIPALEEVSLDKTIKVNMSYLEAFERASLAFLERFQDRNAIVPW 240
IAEVSKIIGRPTEVKWRIPALEEVSLDKTIKVNMSYLEAFERASLAFLERFQDRNAIVPW
Sbjct: 181 IAEVSKIIGRPTEVKWRIPALEEVSLDKTIKVNMSYLEAFERASLAFLERFQDRNAIVPW 240
Query: 241 SGGKDSTAALILARKVFDDVTAVYVKMEYEMPLTDEYVEEVASKLNINLVKVEVPMPIHK 300
SGGKDSTAALILARKVFDDVTAVYVKMEYEMPLTDEYVEEVASKLNINLVKVEVPMPIHK
Sbjct: 241 SGGKDSTAALILARKVFDDVTAVYVKMEYEMPLTDEYVEEVASKLNINLVKVEVPMPIHK 300
Query: 301 YGLPTHSNRWCTRMKVEALYNAIKDIENPVLIVGDRDSESAKRRLKPPVVERETSFGRIL 360
YGLPTHSNRWCTRMKVEALYNAIKDIENPVLIVGDRDSESAKRRLKPPVVERETSFGRIL
Sbjct: 301 YGLPTHSNRWCTRMKVEALYNAIKDIENPVLIVGDRDSESAKRRLKPPVVERETSFGRIL 360
Query: 361 EVMPLKFWSGAMVQLYILASGIKLHPLYYQGFYRLGCTVCPSLAQWEIDLLEKLNYLPEV 420
EVMPLKFWSGAMVQLYILASGIKLHPLYYQGFYRLGCTVCPSLAQWEIDLLEKLNYLPEV
Sbjct: 361 EVMPLKFWSGAMVQLYILASGIKLHPLYYQGFYRLGCTVCPSLAQWEIDLLEKLNYLPEV 420
Query: 421 MKNRKVSGA 429
MKNRKVSGA
Sbjct: 421 MKNRKVSGA 429
>pir||D71018 hypothetical protein PH1441 - Pyrococcus horikoshii
>gi|3257865|dbj|BAA30548.1| (AP000006) 428aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 428
Score = 721 bits (1840), Expect = 0.0
Identities = 336/425 (79%), Positives = 389/425 (91%), Gaps = 2/425 (0%)
Query: 1 MFNIIVRARKDAKAIQYINERNYGGYLKVSSLGGGRKLSEVEDNLREALSDPYIPIFLFG 60
MFNIIVRARKDAKAIQYINERNYGGYLKVSSLGGGR+ SEV DNL +AL PY+PI LFG
Sbjct: 1 MFNIIVRARKDAKAIQYINERNYGGYLKVSSLGGGRRFSEVRDNLSKALEHPYVPILLFG 60
Query: 61 EKEKELANEVIKEVNKPSFIRILRTKKVRNMRVDELYENIEDIKARFRLGVEWVENLKAY 120
EKEKELA ++ E+ PSF++ILRTKKVRNMRVDELY NIEDIKA+FRLG+ W + KAY
Sbjct: 61 EKEKELAQDISSELPHPSFVKILRTKKVRNMRVDELYNNIEDIKAKFRLGISWKD--KAY 118
Query: 121 KFEPENPIGLEVNPDYDIYFALGEGFRKNMIDLLGIDPGDVALVLRKTMNVEEYYSGPHR 180
PEN +GLE+NPDYDIYFA+GEGFRKNM +LL +DPG+VALVLRKTMN+EEYYSGPH+
Sbjct: 119 ILTPENELGLEINPDYDIYFAIGEGFRKNMKELLDVDPGEVALVLRKTMNIEEYYSGPHK 178
Query: 181 IAEVSKIIGRPTEVKWRIPALEEVSLDKTIKVNMSYLEAFERASLAFLERFQDRNAIVPW 240
IAE+SKIIGRPTEVKWRIP L +VSL++TIK N Y+ AFERAS+AFLE+F+D+ A+VPW
Sbjct: 179 IAEISKIIGRPTEVKWRIPLLSDVSLEETIKRNTEYIRAFERASIAFLEQFKDKTAVVPW 238
Query: 241 SGGKDSTAALILARKVFDDVTAVYVKMEYEMPLTDEYVEEVASKLNINLVKVEVPMPIHK 300
SGGKDSTA LILA KVFD+VTAVYVKMEYEMPLTDEY+E+VA KL I+++KVEVPMP+HK
Sbjct: 239 SGGKDSTATLILASKVFDEVTAVYVKMEYEMPLTDEYIEKVAHKLGIDVIKVEVPMPVHK 298
Query: 301 YGLPTHSNRWCTRMKVEALYNAIKDIENPVLIVGDRDSESAKRRLKPPVVERETSFGRIL 360
YGLPTHSNRWCT+MKV+ALYN+IKD+ +PVLIVGDRDSESAKRRLKPPVVER+T+FG++L
Sbjct: 299 YGLPTHSNRWCTKMKVDALYNSIKDLRDPVLIVGDRDSESAKRRLKPPVVERKTTFGKVL 358
Query: 361 EVMPLKFWSGAMVQLYILASGIKLHPLYYQGFYRLGCTVCPSLAQWEIDLLEKLNYLPEV 420
E+MP+KFWSGAMVQLYIL +GI+LHPLYYQGFYRLGCT+CPSLAQWEIDLL+KLNYLPE+
Sbjct: 359 EIMPIKFWSGAMVQLYILMNGIELHPLYYQGFYRLGCTICPSLAQWEIDLLDKLNYLPEI 418
Query: 421 MKNRK 425
MK +K
Sbjct: 419 MKKKK 423
>pir||F72512 hypothetical protein APE2075 - Aeropyrum pernix (strain K1)
>gi|5105774|dbj|BAA81086.1| (AP000063) 464aa long
hypothetical protein [Aeropyrum pernix]
Length = 464
Score = 210 bits (530), Expect = 2e-53
Identities = 152/445 (34%), Positives = 227/445 (50%), Gaps = 31/445 (6%)
Query: 1 MFNIIVRARKDAKAIQYINERNYGGY-LKVSSLGGGRKLSEVEDNLREALSDPYIPIFLF 59
M ++ R+RKDAKA + E+ GG+ ++V SLGG R + E LREA +FL
Sbjct: 1 MLRVVARSRKDAKAAKAAVEKFMGGWGIEVESLGGPRGGALEEAILREARP---FTVFLL 57
Query: 60 GEKEKELANEVIKEVNKPSF--IRILRTKKVRNMRVDELYENIEDIKARFRLGVEWVENL 117
G ++ + + + P F + +++ +VRN+RV+ +Y + +AR RL W +
Sbjct: 58 GREDLDPNSMGGLQDALPPFSEVAVVKGSRVRNVRVEAIYSALNSARARIRLRTHWSGST 117
Query: 118 KAYKFEPENPI--GLEVNPDYDIYFALGEGFRKNMIDLLGI----DPGDVALVLRKTMNV 171
P + L +P D +F G G + +LG+ G AL+ +
Sbjct: 118 FILSRRPGSVEVEDLPYSPQGDSFFVYGRGSK-----VLGLFMQRSIGGAALLFKMYGGK 172
Query: 172 EEYYSGPHRIAEVSKIIGRPTEVK--WRIPALEEVSLDKTIKVNMSYLEAFERASLAFLE 229
YSGP + E+ +P +R V ++ ++ N S L E+ S L
Sbjct: 173 HLVYSGPRPLGELVIDNSKPLPQGRLYRRVKPVRVDVESLVEANRSILRVLEQHSAEVLR 232
Query: 230 RFQDR--NAIVPWSGGKDSTAALILARKVF--DDVTAVYVKMEYEMPLTDEYVEEVASKL 285
+ IVPWSGGKDSTAAL+LA + F D V AVYV + EYVE+VAS L
Sbjct: 233 MVGEDVDTVIVPWSGGKDSTAALLLAVEAFGRDAVKAVYVDTGIDFIENAEYVEKVASTL 292
Query: 286 NINLV----KVEVPMPIHKYGLPTHSNRWCTRMKVEALYNAIKDIEN--PVLIVGDRDSE 339
++LV V+ + I +P RWCT K+EAL A + + V++ GDRD E
Sbjct: 293 GVDLVYARADVDEGLLIEGMPMPDPEYRWCTGRKLEALRQAFRTVSRGKTVVVTGDRDGE 352
Query: 340 SAKRRLKPPVVERETSFGRILEVMPLKFWSGAMVQLYILASGIKLHPLYYQGFYRLGCTV 399
S KR +PP+ E + V PLK WSG VQLYIL+ GI L+PLY GFYR+GC +
Sbjct: 353 SEKRGKRPPLRYDEKLGYPV--VSPLKLWSGGHVQLYILSKGIPLNPLYEAGFYRIGCYL 410
Query: 400 CPSLAQWEIDLLEKLNYLPEVMKNR 424
C +L WEI+++++ + +++ R
Sbjct: 411 CFALRSWEIEVMKRGGIIERILRER 435
>sp|Q60377|Y066_METJA HYPOTHETICAL PROTEIN MJ0066 >gi|2128107|pir||B64308 hypothetical
protein MJ0066 - Methanococcus jannaschii
>gi|1590856|gb|AAB98046.1| (U67464) sulfate adenylate
transferase, subunit 2 (cysD) [Methanococcus jannaschii]
Length = 480
Score = 96.3 bits (236), Expect = 6e-19
Identities = 63/221 (28%), Positives = 113/221 (50%), Gaps = 11/221 (4%)
Query: 203 EVSLDKTIKVNMSYLEAFERASLAFLERFQDR---NAIVPWSGGKDSTAALILARKVFD- 258
E + D ++ N ++ +ER ++ F++ ++ +V +SGGKDS LIL K
Sbjct: 222 EEAFDLMVRANEGVIDNYERNAIGFIKNTYEKIKKPVMVAFSGGKDSLVTLILTLKALGK 281
Query: 259 DVTAVYVKMEYEMPLTDEYVEEVASKLNINLVKVEVPM---PIHKYGLPTHSNRWCTRM- 314
D+ V++ E T + VE+V I ++++ + +YG+P RWC+ +
Sbjct: 282 DIDVVFIDTGLEFEETLKNVEDVERHYGIKIIRLRGENFWEKVKEYGIPARDYRWCSEIC 341
Query: 315 KVEALYNAIKD-IENPVL-IVGDRDSESAKRRLKPPVVERETSFGRILEVMPLKFWSGAM 372
K+E L I++ E+ VL VG R ES R K + R T + + +P+ WS
Sbjct: 342 KLEPLKKFIEENYEDDVLSFVGIRKYESFNRATKKRI-HRNTYIKKQINALPIFHWSSLH 400
Query: 373 VQLYILASGIKLHPLYYQGFYRLGCTVCPSLAQWEIDLLEK 413
V +Y+L + LY +GF R+GC +CP++ E++ +++
Sbjct: 401 VWIYLLREKAPYNKLYEKGFDRIGCFMCPAMEMGEMNKIKR 441
>sp|Q58383|Y973_METJA HYPOTHETICAL PROTEIN MJ0973 >gi|2128610|pir||E64421 hypothetical
protein MJ0973 - Methanococcus jannaschii
>gi|1591636|gb|AAB98978.1| (U67540) 3-phosphoadenosine
5-phosphosulfate sulfotransferase (cysH) [Methanococcus
jannaschii]
Length = 411
Score = 94.4 bits (231), Expect = 2e-18
Identities = 62/220 (28%), Positives = 116/220 (52%), Gaps = 13/220 (5%)
Query: 206 LDKTIKVNMSYLEAFERASLAFLERF----QDRNAIV--PWSGGKDSTAALILARKVFDD 259
++ ++ N +E E+ SL+ ++++ +++N + +SGGKDS+ + +LA KV DD
Sbjct: 145 IEDYLRKNKDRIEKLEKKSLSIIKKYYEMCKNKNYAINTSFSGGKDSSVSTLLANKVIDD 204
Query: 260 VTAVYVKMEYEMPLTDEYVEEVASKLNINLVKVEVP---MPIHKYGLPTHSNRWCTRM-K 315
+ +++ E T ++V++ A K ++NLV ++ + K G+PT RWC + K
Sbjct: 205 LEVIFIDTGLEFKDTIDFVKKFAKKYDLNLVVLKGKNFWEYLEKEGIPTKDYRWCNSVCK 264
Query: 316 VEALYNAIKDIENPVLIVGDRDSESAKRRLKPPVVERETSF-GRILEVMPLKFWSGAMVQ 374
+E L +K + I G R ES R + ER++ F + + P+ W G V
Sbjct: 265 LEPLKEYLKKYKRVYTIDGSRRYESFTR--EKLTYERKSGFIENQINIFPILDWRGTDVW 322
Query: 375 LYILASGIKLHPLYYQGFYRLGCTVCPSLAQWEIDLLEKL 414
+I + + + LY +GF R+GC +CP+ E +++L
Sbjct: 323 SWIYLNDVIYNELYDKGFERIGCYMCPAALNAEFLRVKEL 362
>pir||B75215 5'-adenylylphosphosulfate reductase related protein PAB0168 -
Pyrococcus abyssi (strain Orsay)
>gi|5457678|emb|CAB49169.1| (AJ248283)
5'-ADENYLYLPHOSPHOSULFATE REDUCTASE related protein
[Pyrococcus abyssi]
Length = 632
Score = 88.5 bits (216), Expect = 1e-16
Identities = 67/225 (29%), Positives = 110/225 (48%), Gaps = 14/225 (6%)
Query: 202 EEVSLDKTIKVNMSYLEAFERASLAFLERFQDRNAI---VPWSGGKDSTAALILARKVFD 258
++ ++ I+ N LE + + F+ + ++ + V +SGGKDS A L LA + FD
Sbjct: 219 KKAKIEDVIRANSQALEEKVKEAKEFMRKTAEKFKLPVSVAFSGGKDSLAVLGLALEEFD 278
Query: 259 DVTAVYVKMEYEMPLTDEYVEEVASKLNINLVKVEVP-------MPIHKYGLPTHSNRWC 311
+ T + E P T EYVE + +L V+ V ++ + P RWC
Sbjct: 279 EFTVFFNNTGIEFPETVEYVESLRKELEPKGVRFIVADAGDAFWRAVNIFSPPGMDYRWC 338
Query: 312 TRM-KVEALYNAIKDI--ENPVLIVGDRDSESAKRRLKPPVVERETSFGRILEVMPLKFW 368
++ K+ + AIK + ++ VG R ES KR K V R + + P+ W
Sbjct: 339 CKVTKLGPITLAIKRHFPQGVLMFVGQRKFESFKR-YKQGRVWRNSWVPNEIGAAPIFHW 397
Query: 369 SGAMVQLYILASGIKLHPLYYQGFYRLGCTVCPSLAQWEIDLLEK 413
+ V LYI + ++ +PLY +G R+GC +CPS + EI+ L+K
Sbjct: 398 TALEVWLYIFSRKLRYNPLYERGIDRIGCFLCPSQSLAEIERLKK 442
>pir||E71451 hypothetical protein PH0268 - Pyrococcus horikoshii
>gi|3256657|dbj|BAA29340.1| (AP000001) 630aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 630
Score = 86.6 bits (211), Expect = 5e-16
Identities = 70/222 (31%), Positives = 110/222 (49%), Gaps = 12/222 (5%)
Query: 203 EVSLDKTIKVNMSYLEAFERASLAFLERFQDRNAI---VPWSGGKDSTAALILARKVFDD 259
+ ++ IK N + LE R + F+ ++ + V +SGGKDS A L LA + F++
Sbjct: 220 KATIKDVIKANSAELEKKVREARNFMRSVAEKFKLPVAVAFSGGKDSLAVLGLAMEEFNN 279
Query: 260 VTAVYVKMEYEMPLTDEYVEEVASKL-NINLVKVEVP----MPIHKYGLPTHSNRWCTRM 314
T + E P T EYV ++ K N+N + + I+ + P RWC ++
Sbjct: 280 FTVFFNNTGIEFPETVEYVMKLREKYKNLNFIIADAGDAFWRAINIFSPPGMDYRWCCKV 339
Query: 315 -KVEALYNAI-KDIENPVLI-VGDRDSESAKRRLKPPVVERETSFGRILEVMPLKFWSGA 371
K+ + AI K N VL+ VG R ES KR K V + + P+ W+
Sbjct: 340 TKLGPITLAIRKHFPNGVLMFVGQRKFESFKR-YKQGRVWKNKWVPNEIGAAPIFHWTAL 398
Query: 372 MVQLYILASGIKLHPLYYQGFYRLGCTVCPSLAQWEIDLLEK 413
V LYI + G++ +PLY +G R+GC +CPS + EI L++
Sbjct: 399 EVWLYIFSRGLEYNPLYEKGIDRIGCFLCPSQSLAEIQRLKE 440
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.139 0.404
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159510486
Number of Sequences: 2977
Number of extensions: 6927147
Number of successful extensions: 21195
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 21176
Number of HSP's gapped (non-prelim): 8
length of query: 429
length of database: 189,106,746
effective HSP length: 56
effective length of query: 373
effective length of database: 155,591,474
effective search space: 58035619802
effective search space used: 58035619802
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)