BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1899 (moaa-like) DE:MOLYBDENUM COFACTOR BIOSYNTHESIS MOAA
HOMOLOG.
(1042 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75112 molybdenum cofactor biosynthesis moaa homolog. PAB18... 2149 0.0
pir||E71020 hypothetical protein PH1458 - Pyrococcus horikoshii ... 875 0.0
gi|11499897 conserved hypothetical protein [Archaeoglobus fulgid... 469 e-131
emb|CAC11808.1| (AL445065) conserved hypothetical protein [Therm... 453 e-126
gb|AAK40578.1| Conserved hypothetical protein [Sulfolobus solfat... 398 e-109
pir||G72494 hypothetical protein APE2598 - Aeropyrum pernix (str... 395 e-108
pir||H69210 conserved hypothetical protein MTH831 - Methanobacte... 340 4e-92
sp|Q58036|Y619_METJA HYPOTHETICAL PROTEIN MJ0619 >gi|2128410|pir... 336 9e-91
sp|Q58454|YA54_METJA HYPOTHETICAL PROTEIN MJ1054 >gi|2129344|pir... 152 2e-35
dbj|BAA06142.2| (D29671) DNA-dependent DNA polymerase [Pyrococcu... 116 9e-25
sp|O59610|DPOL_PYRHO DNA POLYMERASE >gi|7446920|pir||C71210 prob... 112 2e-23
pir||B70797 probable transferase - Mycobacterium tuberculosis (s... 104 5e-21
sp|Q51334|DPOL_PYRSD DNA POLYMERASE (DEEP VENT DNA POLYMERASE) [... 95 5e-18
sp|Q58242|Y832_METJA HYPOTHETICAL PROTEIN MJ0832 >gi|2129243|pir... 88 4e-16
emb|CAC18555.1| (AJ245819) DNA polymerase and endonucleases [The... 85 5e-15
pir||B72665 hypothetical protein APE0745 - Aeropyrum pernix (str... 84 7e-15
sp|Q58815|YE20_METJA HYPOTHETICAL PROTEIN MJ1420 >gi|2127939|pir... 77 1e-12
pir||C71110 hypothetical protein PH0650 - Pyrococcus horikoshii ... 77 1e-12
sp|Q58446|RPA2_METJA DNA-DIRECTED RNA POLYMERASE SUBUNIT A" >gi|... 77 1e-12
>pir||H75112 molybdenum cofactor biosynthesis moaa homolog. PAB1899 - Pyrococcus
abyssi (strain Orsay) >gi|5458128|emb|CAB49617.1|
(AJ248285) MOLYBDENUM COFACTOR BIOSYNTHESIS MOAA HOMOLOG.
[Pyrococcus abyssi]
Length = 1042
Score = 2149 bits (5508), Expect = 0.0
Identities = 1042/1042 (100%), Positives = 1042/1042 (100%)
Query: 1 MAETVGEIPSGEKEFEASTKRLREIIEFPELSEDEFHELLKSASRGYGSPLPHRTYSLCP 60
MAETVGEIPSGEKEFEASTKRLREIIEFPELSEDEFHELLKSASRGYGSPLPHRTYSLCP
Sbjct: 1 MAETVGEIPSGEKEFEASTKRLREIIEFPELSEDEFHELLKSASRGYGSPLPHRTYSLCP 60
Query: 61 ETRRVVPAVVWEKDGKVWITKKCPEGMITDLYYEDVELYYRFSRWKFEEKKLFSVNVENT 120
ETRRVVPAVVWEKDGKVWITKKCPEGMITDLYYEDVELYYRFSRWKFEEKKLFSVNVENT
Sbjct: 61 ETRRVVPAVVWEKDGKVWITKKCPEGMITDLYYEDVELYYRFSRWKFEEKKLFSVNVENT 120
Query: 121 GVNCPFDCGLCARHRSHTSLLNIVLTNRCNLNCWYCFPPTEEAVFKFGDKVKIATFEEVA 180
GVNCPFDCGLCARHRSHTSLLNIVLTNRCNLNCWYCFPPTEEAVFKFGDKVKIATFEEVA
Sbjct: 121 GVNCPFDCGLCARHRSHTSLLNIVLTNRCNLNCWYCFPPTEEAVFKFGDKVKIATFEEVA 180
Query: 181 KNFKFEHKVEIDGFKGEYSIPNDLYVLTFNDGKAEWTRVTKFLRRKHEGKIRVIKTKTGR 240
KNFKFEHKVEIDGFKGEYSIPNDLYVLTFNDGKAEWTRVTKFLRRKHEGKIRVIKTKTGR
Sbjct: 181 KNFKFEHKVEIDGFKGEYSIPNDLYVLTFNDGKAEWTRVTKFLRRKHEGKIRVIKTKTGR 240
Query: 241 TIRTTPEHKFFVYKDGELVKKRADELEPGDELVLLWRFESEETLTEINLLEAFKDLPQEE 300
TIRTTPEHKFFVYKDGELVKKRADELEPGDELVLLWRFESEETLTEINLLEAFKDLPQEE
Sbjct: 241 TIRTTPEHKFFVYKDGELVKKRADELEPGDELVLLWRFESEETLTEINLLEAFKDLPQEE 300
Query: 301 KEKVYVRGIKDLDLTPLKEKYGDKVYYWARQDSMPLSVFYELNVDLDKEFRLGRDATTYE 360
KEKVYVRGIKDLDLTPLKEKYGDKVYYWARQDSMPLSVFYELNVDLDKEFRLGRDATTYE
Sbjct: 301 KEKVYVRGIKDLDLTPLKEKYGDKVYYWARQDSMPLSVFYELNVDLDKEFRLGRDATTYE 360
Query: 361 LPSKLKITPSLAKLIGYFVSDGNYSDKDLRITVGHEDVEKEIVNILEELGLPYSFLEWEG 420
LPSKLKITPSLAKLIGYFVSDGNYSDKDLRITVGHEDVEKEIVNILEELGLPYSFLEWEG
Sbjct: 361 LPSKLKITPSLAKLIGYFVSDGNYSDKDLRITVGHEDVEKEIVNILEELGLPYSFLEWEG 420
Query: 421 KTKQIVIGSRLLRLVFKHVFKIPEGAPNKRLPEGFLSFPFEAKVALLSGLFNGDGYVVRG 480
KTKQIVIGSRLLRLVFKHVFKIPEGAPNKRLPEGFLSFPFEAKVALLSGLFNGDGYVVRG
Sbjct: 421 KTKQIVIGSRLLRLVFKHVFKIPEGAPNKRLPEGFLSFPFEAKVALLSGLFNGDGYVVRG 480
Query: 481 EHHLSIGYASTSKGLIRDILYLLASLGIFARVYRVPKEKMKGANHDLYKLYIAGTDLVRL 540
EHHLSIGYASTSKGLIRDILYLLASLGIFARVYRVPKEKMKGANHDLYKLYIAGTDLVRL
Sbjct: 481 EHHLSIGYASTSKGLIRDILYLLASLGIFARVYRVPKEKMKGANHDLYKLYIAGTDLVRL 540
Query: 541 VELLELREGHREKLGEIGNRKPARVKKIADFYIDVVDEVSEEEYSGYVYDLEVENEGHSF 600
VELLELREGHREKLGEIGNRKPARVKKIADFYIDVVDEVSEEEYSGYVYDLEVENEGHSF
Sbjct: 541 VELLELREGHREKLGEIGNRKPARVKKIADFYIDVVDEVSEEEYSGYVYDLEVENEGHSF 600
Query: 601 VAADGILVSNCFFYAREGEPIYEPTLEQIRMMLRNAKKEHPIGANAVQFTGGEPTLRDDL 660
VAADGILVSNCFFYAREGEPIYEPTLEQIRMMLRNAKKEHPIGANAVQFTGGEPTLRDDL
Sbjct: 601 VAADGILVSNCFFYAREGEPIYEPTLEQIRMMLRNAKKEHPIGANAVQFTGGEPTLRDDL 660
Query: 661 IEIIKIAKEEGYDHVQLNTDGIKLAFDPELVKKIRQAGVNTLYLSYDGMTPQTNWKNHWE 720
IEIIKIAKEEGYDHVQLNTDGIKLAFDPELVKKIRQAGVNTLYLSYDGMTPQTNWKNHWE
Sbjct: 661 IEIIKIAKEEGYDHVQLNTDGIKLAFDPELVKKIRQAGVNTLYLSYDGMTPQTNWKNHWE 720
Query: 721 IPLIFENVRKAGGPGIVLVPTLIRNVNDHEAGAIINFGLNHLDIVRGVNFQPISLVGRVP 780
IPLIFENVRKAGGPGIVLVPTLIRNVNDHEAGAIINFGLNHLDIVRGVNFQPISLVGRVP
Sbjct: 721 IPLIFENVRKAGGPGIVLVPTLIRNVNDHEAGAIINFGLNHLDIVRGVNFQPISLVGRVP 780
Query: 781 KKERQRFRITIAGAIKKIEEQTNGVISKDDWYPIPIAGHIARFFEVFTGSKYYMTSHFAC 840
KKERQRFRITIAGAIKKIEEQTNGVISKDDWYPIPIAGHIARFFEVFTGSKYYMTSHFAC
Sbjct: 781 KKERQRFRITIAGAIKKIEEQTNGVISKDDWYPIPIAGHIARFFEVFTGSKYYMTSHFAC 840
Query: 841 GAATYVFLDREEKKVIPIPRFLDVEGFVEFLLEKAEEIEKARFKGLAKLKAIGETVFIKF 900
GAATYVFLDREEKKVIPIPRFLDVEGFVEFLLEKAEEIEKARFKGLAKLKAIGETVFIKF
Sbjct: 841 GAATYVFLDREEKKVIPIPRFLDVEGFVEFLLEKAEEIEKARFKGLAKLKAIGETVFIKF 900
Query: 901 KQFYDEKNAPKGLDVLGLIKNAFVHGNYDALGKFHMNTLFLGMMHFMDEYNYDVERVERC 960
KQFYDEKNAPKGLDVLGLIKNAFVHGNYDALGKFHMNTLFLGMMHFMDEYNYDVERVERC
Sbjct: 901 KQFYDEKNAPKGLDVLGLIKNAFVHGNYDALGKFHMNTLFLGMMHFMDEYNYDVERVERC 960
Query: 961 VIHYAMPDGRIVPFCTFNVIPELYRDKVQRQFSYSWEEWKKLHPDWDYMKDKYVRTKEFV 1020
VIHYAMPDGRIVPFCTFNVIPELYRDKVQRQFSYSWEEWKKLHPDWDYMKDKYVRTKEFV
Sbjct: 961 VIHYAMPDGRIVPFCTFNVIPELYRDKVQRQFSYSWEEWKKLHPDWDYMKDKYVRTKEFV 1020
Query: 1021 EKMKKSELYRKTYIDIVNYFER 1042
EKMKKSELYRKTYIDIVNYFER
Sbjct: 1021 EKMKKSELYRKTYIDIVNYFER 1042
>pir||E71020 hypothetical protein PH1458 - Pyrococcus horikoshii
>gi|3257882|dbj|BAA30565.1| (AP000006) 587aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 587
Score = 875 bits (2237), Expect = 0.0
Identities = 410/432 (94%), Positives = 427/432 (97%)
Query: 611 CFFYAREGEPIYEPTLEQIRMMLRNAKKEHPIGANAVQFTGGEPTLRDDLIEIIKIAKEE 670
CFFYAREGEPIYEPTLEQIRMMLRNAKKEHPIGANAVQFTGGEPTLRDDLIEIIKIAKEE
Sbjct: 156 CFFYAREGEPIYEPTLEQIRMMLRNAKKEHPIGANAVQFTGGEPTLRDDLIEIIKIAKEE 215
Query: 671 GYDHVQLNTDGIKLAFDPELVKKIRQAGVNTLYLSYDGMTPQTNWKNHWEIPLIFENVRK 730
GYDH+QLNTDGIKLAFDPELVKK+R+AGVNTLYLSYDGMTPQTNWKNHWEIPLIFENVRK
Sbjct: 216 GYDHIQLNTDGIKLAFDPELVKKLREAGVNTLYLSYDGMTPQTNWKNHWEIPLIFENVRK 275
Query: 731 AGGPGIVLVPTLIRNVNDHEAGAIINFGLNHLDIVRGVNFQPISLVGRVPKKERQRFRIT 790
AGGPGIVLVPTLIRN+NDHEAGAIINFGLNHLDIVRGVNFQPISLVGRVP+KERQRFRIT
Sbjct: 276 AGGPGIVLVPTLIRNINDHEAGAIINFGLNHLDIVRGVNFQPISLVGRVPRKERQRFRIT 335
Query: 791 IAGAIKKIEEQTNGVISKDDWYPIPIAGHIARFFEVFTGSKYYMTSHFACGAATYVFLDR 850
IAGAIKKIEEQTNGVI+K+DWYPIPIAGHIARFFE FTG KYYMTSHFACGAATYVFLDR
Sbjct: 336 IAGAIKKIEEQTNGVIAKEDWYPIPIAGHIARFFEAFTGRKYYMTSHFACGAATYVFLDR 395
Query: 851 EEKKVIPIPRFLDVEGFVEFLLEKAEEIEKARFKGLAKLKAIGETVFIKFKQFYDEKNAP 910
EEKKVIPIPRF+DV+GFVEFL+EKAEEIEKARFK LAKLKAIGET+F+KFKQFYDEKNAP
Sbjct: 396 EEKKVIPIPRFIDVDGFVEFLVEKAEEIEKARFKSLAKLKAIGETIFVKFKQFYDEKNAP 455
Query: 911 KGLDVLGLIKNAFVHGNYDALGKFHMNTLFLGMMHFMDEYNYDVERVERCVIHYAMPDGR 970
KGLDVLGLIKNAFVHG YDALGKFHMNTLF+GMMHFMDEYNYDVERVERCVIHYAMPDGR
Sbjct: 456 KGLDVLGLIKNAFVHGTYDALGKFHMNTLFIGMMHFMDEYNYDVERVERCVIHYAMPDGR 515
Query: 971 IVPFCTFNVIPELYRDKVQRQFSYSWEEWKKLHPDWDYMKDKYVRTKEFVEKMKKSELYR 1030
IVPFCTFNVIPE+YRDKVQRQFSYSWEEWKKLHPDWDY KDKY+RTKEFVEKMKKSE+Y+
Sbjct: 516 IVPFCTFNVIPEIYRDKVQRQFSYSWEEWKKLHPDWDYKKDKYIRTKEFVEKMKKSEVYK 575
Query: 1031 KTYIDIVNYFER 1042
KTYIDIVNYFER
Sbjct: 576 KTYIDIVNYFER 587
Score = 319 bits (810), Expect = 8e-86
Identities = 150/210 (71%), Positives = 176/210 (83%), Gaps = 11/210 (5%)
Query: 1 MAETVGEIPSGEKEFEASTKRLREIIEFPELSEDEFHELLKSASRGYGSPLPHRTYSLCP 60
MAET+GE+PSGEKEFEASTK +REIIEFPE++E+EF++LLKSAS+GYGSPLPHRTYSLCP
Sbjct: 1 MAETLGEVPSGEKEFEASTKHVREIIEFPEMTEEEFNKLLKSASKGYGSPLPHRTYSLCP 60
Query: 61 ETRRVVPAVVWEKDGKVWITKKCPEGMITDLYYEDVELYYRFSRWKFEEKKLFSVNVENT 120
E+RRVVPAVVWEKDGKVWITKKCPEGMITDLYYEDVELYYRFS+W+FEEKKLFS NV NT
Sbjct: 61 ESRRVVPAVVWEKDGKVWITKKCPEGMITDLYYEDVELYYRFSKWRFEEKKLFSANVSNT 120
Query: 121 GVNCPFDCGLCARHRSHTSLLNIVLTNRCNLNCWYCFPPTEEAVFKFGDKVKIATFEEV- 179
G+NCPFDCGLC RHRSHTSL+NIVLTNRCNL+CWYCF E G+ + T E++
Sbjct: 121 GINCPFDCGLCPRHRSHTSLINIVLTNRCNLSCWYCFFYARE-----GEPIYEPTLEQIR 175
Query: 180 --AKNFKFEHKVEIDGFK---GEYSIPNDL 204
+N K EH + + + GE ++ +DL
Sbjct: 176 MMLRNAKKEHPIGANAVQFTGGEPTLRDDL 205
>gi|11499897 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7451255|pir||D69539 conserved hypothetical protein
AF2316 - Archaeoglobus fulgidus
>gi|2648203|gb|AAB88940.1| (AE000944) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 518
Score = 469 bits (1194), Expect = e-131
Identities = 226/392 (57%), Positives = 289/392 (73%), Gaps = 9/392 (2%)
Query: 611 CFFYAREGEPIYEPTLEQIRMMLRNAKKEHPIGANAVQFTGGEPTLRDDLIEIIKIAKEE 670
CFFYAR +YEPT+EQIR M+R AK PIG NAVQ TGGEPTLRDDLI+II++ KEE
Sbjct: 117 CFFYARRAGYVYEPTIEQIREMVRKAKNMKPIGCNAVQLTGGEPTLRDDLIDIIRMIKEE 176
Query: 671 GYDHVQLNTDGIKLAFDPELVKKIRQAGVNTLYLSYDGMTPQTNWKNHWEIPLIFENVRK 730
GYDH+QLNT+GI+LA DP+ ++R AGVNT+YLS+DG+ +TN KNH EIP I EN R+
Sbjct: 177 GYDHIQLNTNGIRLAEDPDFALRVRVAGVNTVYLSFDGVDEKTNPKNHHEIPKILENCRR 236
Query: 731 AGGPGIVLVPTLIRNVNDHEAGAIINFGLNHLDIVRGVNFQPISLVGRVPKKERQRFRIT 790
A G+VLVPT+I+ VNDH+ G II F ++DIVRGVNFQP+SLVG +P+KER++FRIT
Sbjct: 237 A-QLGLVLVPTVIKGVNDHQLGDIIRFAAENIDIVRGVNFQPVSLVGSMPRKEREQFRIT 295
Query: 791 IAGAIKKIEEQTNGVISKDDWYPIPIAGHIARFFEVFTGS-KYYMTSHFACGAATYVFLD 849
I IK IEEQTNG I ++D+YP+P I+RF E TG +Y +T+HFACG ATY+F
Sbjct: 296 IPDCIKAIEEQTNGEIGREDFYPVPSVVPISRFVEALTGQPQYELTTHFACGMATYIF-- 353
Query: 850 REEKKVIPIPRFLDVEGFVEFLLEKAEEIEKARFKGLAKLKAIGETVFIKFKQFYDEKNA 909
++ ++IPI RF+DVEG EFL EKAEEI K+R K + +K I I ++F D A
Sbjct: 354 KDNGRLIPITRFVDVEGLFEFLNEKAEEIAKSRMKTIRAIKDI-----IDLRKFVDTSKA 408
Query: 910 PKGLDVLGLIKNAFVHGNYDALGKFHMNTLFLGMMHFMDEYNYDVERVERCVIHYAMPDG 969
PKG ++ ++ + +Y LG+FH+ +LF+GMMHF D YNYD+ RVERC IHY PDG
Sbjct: 409 PKGFNIAKILYEVLIKHDYSTLGEFHVKSLFIGMMHFQDLYNYDIARVERCEIHYGSPDG 468
Query: 970 RIVPFCTFNVIPELYRDKVQRQFSYSWEEWKK 1001
RI+PFCTFNVIPE YRD + ++ EEW+K
Sbjct: 469 RIIPFCTFNVIPERYRDAIHEKYGIPIEEWEK 500
Score = 117 bits (290), Expect = 7e-25
Identities = 59/136 (43%), Positives = 85/136 (62%), Gaps = 4/136 (2%)
Query: 51 LPHRTYSLCPETRRVVPAVVWEKDGKVWITKKCPE-GMITDLYYEDVELYYRFSRWKFEE 109
LP++T SLCPE +++ A V+E++GKV I K C E G D+Y+ D E++ + +R+ +
Sbjct: 13 LPYKTKSLCPECLKILEAEVYEENGKVMIRKVCEEHGEFVDVYWGDAEMFKKAARFAADG 72
Query: 110 KKLFSVNVENTGVNCPFDCGLCARHRSHTSLLNIVLTNRCNLNCWYCFPPTEEAVFKFGD 169
+ + +NT CPF CGLC H+SHT+LLNIVLTNRC+L CWYCF A + +
Sbjct: 73 HGISTPITQNT--TCPFSCGLCNNHKSHTALLNIVLTNRCDLACWYCFFYARRAGYVYEP 130
Query: 170 KV-KIATFEEVAKNFK 184
+ +I AKN K
Sbjct: 131 TIEQIREMVRKAKNMK 146
>emb|CAC11808.1| (AL445065) conserved hypothetical protein [Thermoplasma acidophilum]
Length = 571
Score = 453 bits (1153), Expect = e-126
Identities = 215/423 (50%), Positives = 299/423 (69%), Gaps = 6/423 (1%)
Query: 611 CFFYAREGEPIYEPTLEQIRMMLRNAKKEHPIGANAVQFTGGEPTLRDDLIEIIKIAKEE 670
CFFYA+E EPIYEPT +QIRMMLR K E P+GANAVQ TGGEPT+RDD+I+I++IA+EE
Sbjct: 126 CFFYAKENEPIYEPTQDQIRMMLRRMKNEKPVGANAVQITGGEPTMRDDIIDIVRIAREE 185
Query: 671 GYDHVQLNTDGIKLAFDPELVKKIRQAGVNTLYLSYDGMTPQTNWKNHWEIPLIFENVRK 730
GYDHVQLNT+ ++ AFDP+ V+++R+AG N +Y S+DG TP++N KN WEIP EN +K
Sbjct: 186 GYDHVQLNTNSVRAAFDPDFVRRVREAGSNVIYTSFDGPTPRSNPKNFWEIPAALENYKK 245
Query: 731 AGGPGIVLVPTLIRNVNDHEAGAIINFGLNHLDIVRGVNFQPISLVGRVPKKERQRFRIT 790
A G+VLVPT+I VND G II FGL+++D+VR VNFQP+SLVGR+P + R + RIT
Sbjct: 246 A-PLGVVLVPTVIGGVNDMYLGDIIRFGLSNIDVVRAVNFQPVSLVGRMPDRARAKQRIT 304
Query: 791 IAGAIKKIEEQTNGVISKDDWYPIPIAGHIARFFEVFTGSKYYMTS-HFACGAATYVFLD 849
I GAIKKIE+QT+G+I ++D++ +P ++ F G Y S H+ACG TY+F
Sbjct: 305 IPGAIKKIEQQTDGLIGREDFFTVPSTASVSNFVAALKGRPTYKLSIHYACGMGTYLF-- 362
Query: 850 REEKKVIPIPRFLDVEGFVEFLLEKAEEIEKARFKGLAKLKAIGETVFIKFKQFYDEKNA 909
++++KVIP+ RF+DV+G E++ A+EI + FK L K+++ + ++ K+F D + A
Sbjct: 363 KDDEKVIPVTRFVDVKGMFEYIQNLADEIGDSTFKSLRKVESTAKLLY-NLKKFVDYEKA 421
Query: 910 PKGLDVLGLIKNAFVHGNYDALGKFHMNTLFLGMMHFMDEYNYDVERVERCVIHYAMPDG 969
PK + ++ NAF G+Y L FH ++F+G MHF D Y YDV+RVERC IHYAMPDG
Sbjct: 422 PKDFKLKDMVYNAFTEGDYHGLKAFHYKSMFIGFMHFQDPYTYDVDRVERCDIHYAMPDG 481
Query: 970 RIVPFCTFNVIPELYRDKVQRQFSYSWEEWKKLHPDWDYMKDKYVRTKEFVEKMKKSELY 1029
R++PFC FNVIPELYRD QR++S + +++ K+KY R +K + Y
Sbjct: 482 RVIPFCAFNVIPELYRDSTQRKYSIPAKVYEE-KTGRSLKKEKYFREYSLEDKKRIIAFY 540
Query: 1030 RKT 1032
++
Sbjct: 541 ERS 543
Score = 101 bits (249), Expect = 5e-20
Identities = 48/113 (42%), Positives = 72/113 (63%), Gaps = 10/113 (8%)
Query: 55 TYSLCPET-------RRVVPAVVWEKDGKVWITKKCPE-GMITDLYYEDVELYYRFSRWK 106
T SLCP + +PA+V+E+ G+V + K+CPE G+ + Y+ED E++ +W+
Sbjct: 15 TESLCPGCVDEEKFDQMRIPAIVYEEGGEVKLIKECPEHGVTVEKYWEDYEMFEEAKKWQ 74
Query: 107 FEEKKLFSVNVEN--TGVNCPFDCGLCARHRSHTSLLNIVLTNRCNLNCWYCF 157
K+ + NV + + CP CGLC +H+SHT L NIV+TNRC+L+CWYCF
Sbjct: 75 DPGVKILNPNVAYYASKIVCPTHCGLCVKHKSHTGLGNIVVTNRCDLSCWYCF 127
>gb|AAK40578.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 582
Score = 398 bits (1012), Expect = e-109
Identities = 201/434 (46%), Positives = 283/434 (64%), Gaps = 20/434 (4%)
Query: 611 CFFYAREGEPIYEPTLEQIRMMLRNAKKEHPIGANAVQFTGGEPTLRDDLIEIIKIAKEE 670
CFFYA + +YEPTLEQI+ M+ KK+ +Q TGGEPTLR+D+IEIIK+ +E
Sbjct: 152 CFFYAEKAGYVYEPTLEQIKFMVDQLKKQDI--TLVIQVTGGEPTLREDIIEIIKMLREN 209
Query: 671 GYDHVQLNTDGIKLAF----DPELVKK----IRQAGVNTLYLSYDGMTPQTNWKNHWEIP 722
G H+QLN+ G A DP+ K +R+AGVNT+Y+S+DG T +TN KNHWEIP
Sbjct: 210 GVKHIQLNSWGGTFAKLYLEDPDKAIKYARALREAGVNTVYMSFDGTTRKTNPKNHWEIP 269
Query: 723 LIFENVRKAGGPGIVLVPTLIRNVNDHEAGAIINFGLNHLDIVRGVNFQPISLVGRVPKK 782
E R+AG +VLVPT+I+ VND++ G I+ F ++D+VR VNFQP+SL G + +
Sbjct: 270 YTLEVFRRAGMTSVVLVPTVIKTVNDNDLGNIVKFAAYNMDVVRSVNFQPVSLTGMMKRN 329
Query: 783 ERQRFRITIAGAIKKIEEQTNGVISKDDWYPIPIAGHIARFFEVFTGSKYY-MTSHFACG 841
R +FRITI IK IEEQT+G I+KD WYPI + +R E TG + + M +H +CG
Sbjct: 330 MRAKFRITIPEVIKNIEEQTDGEITKDSWYPIGTSVVFSRLVEALTGKEQFEMANHPSCG 389
Query: 842 AATYVFLD--REEKKVIPIPRFLDVEGFVEFLLEKAEEIEKARFKGLAKLKAIGETVFIK 899
A TYV+++ E IPI +F+D+EG +E+L EK EE+ + A + V
Sbjct: 390 AGTYVYVEWRNHEPHFIPISKFIDLEGLLEYLKEKEEELREG-----ANKVWVASKVLYS 444
Query: 900 FKQFYDEKNAPKGLDVLGLIKNAFVHGNYDALGKFHMNTLFLGMMHFMDEYNYDVERVER 959
++F D++ PK DV ++ N +H NY+ALG++H TLFLG MHFMD YNYDV+RV R
Sbjct: 445 IRKFIDKEQGPKDFDVYKMLYNIIIHHNYEALGEWHYRTLFLGSMHFMDLYNYDVQRVMR 504
Query: 960 CVIHYAMPDGRIVPFCTFNVIPELYRDKVQRQFSYSWEEWKKLHPDWDYMKDKYVRTKEF 1019
C IHY +PDGR++PFCT+NV+ +LYRDKV R++ ++W K H + + + D ++ K
Sbjct: 505 CDIHYVVPDGRVIPFCTYNVLNDLYRDKVLREYQIPLDKWTKEHGE-NSLGDA-IKYKRI 562
Query: 1020 VEKMKKSELYRKTY 1033
++ SE+Y+ TY
Sbjct: 563 ASTLENSEIYKNTY 576
Score = 123 bits (306), Expect = 9e-27
Identities = 59/132 (44%), Positives = 87/132 (65%), Gaps = 15/132 (11%)
Query: 48 GSPLP---------HRTYSLCPETRRVVPAVVWEKDGKVWITKKCPE-GMITDLYYEDVE 97
G PLP T+SLCP R++PA ++EK+GK++I K CPE G DLYY D
Sbjct: 35 GGPLPTLAKDEKLVRVTHSLCPACYRLLPATIFEKEGKLFIRKICPEHGEFEDLYYADSS 94
Query: 98 LYYRFSRWKFEEK--KLFSVNVENTGVNCPFDCGLCARHRSHTSLLNIVLTNRCNLNCWY 155
LYY+F W++E K K+ V++++ CP++CGLC H H++L+N+V+TNRC+L+CWY
Sbjct: 95 LYYKFDYWEYEGKGPKVPYVDLKSP---CPYNCGLCPMHHQHSALVNLVITNRCDLSCWY 151
Query: 156 CFPPTEEAVFKF 167
CF E+A + +
Sbjct: 152 CFFYAEKAGYVY 163
>pir||G72494 hypothetical protein APE2598 - Aeropyrum pernix (strain K1)
>gi|5106304|dbj|BAA81615.1| (AP000064) 610aa long
hypothetical protein [Aeropyrum pernix]
Length = 610
Score = 395 bits (1004), Expect = e-108
Identities = 206/469 (43%), Positives = 307/469 (64%), Gaps = 35/469 (7%)
Query: 595 NEGHSFVAADGILVSN--------CFFYAREGEPIYEPTLEQIRMMLRNAKKEHPIGANA 646
+E HS A I+V+N CFFYA IYEP++EQI+ M+R ++ G++
Sbjct: 137 HENHS--ALVNIVVTNRCDLSCFYCFFYAERAGYIYEPSIEQIKFMVRQVARQRQ-GSDV 193
Query: 647 ---VQFTGGEPTLRDDLIEIIKIAKEEGYDHVQLNTDGIKLAF----DP----ELVKKIR 695
+Q TGGEPT+R+DL++++K +E G ++QLNT+GI +A +P + V+ +R
Sbjct: 194 HVNIQITGGEPTVREDLVDVVKAIREAGAHYIQLNTNGINVARRYLDNPPGAIDYVRSLR 253
Query: 696 QAGVNTLYLSYDGMTPQTNWKNHWEIPLIFENVRKAGGPGIVLVPTLIRNVNDHEAGAII 755
+AGV+ +Y+S+DG+TP+ NWKNH+E P + ++ G +VLVPT+IR +NDHE G II
Sbjct: 254 EAGVSVVYMSFDGVTPKVNWKNHYEAPFALKAFQEGGLDNVVLVPTVIRTINDHEVGDII 313
Query: 756 NFGLNHLDIVRGVNFQPISLVGRVPKKERQRFRITIAGAIKKIEEQTNGVISKDDWYPIP 815
F H+D+VRGVNFQP+SL G + K ER+R RITI IK+IEEQT+G I D WYP+P
Sbjct: 314 RFAGKHIDVVRGVNFQPVSLTGMMRKHERERMRITIPDVIKRIEEQTDGQIPMDAWYPVP 373
Query: 816 IAGHIARFFEVFTGSKY-YMTSHFACGAATYVF-LDREE----KKVIPIPRFLDVEGFVE 869
+ + + TG Y +++H ACG+ATYVF L+R+ ++ +PI +DVEGF+E
Sbjct: 374 VVAKFVKAIDALTGKLYDTLSNHPACGSATYVFALERDRYGVPRRFLPITEVIDVEGFIE 433
Query: 870 FLLEKAEEIEKARFKGLAKLKAIGETVFIKFKQFYDEKNAPKGLDVLGLIKNAFVHGNYD 929
FL E+ ++E + L++LK E V+ + ++F D P+ LD+ LI + F+ NY+
Sbjct: 434 FLDEERIKLEHNSGR-LSRLKVAAEIVW-RARRFVDFDRMPRDLDIYKLIVSIFLRKNYE 491
Query: 930 ALGKFHMNTLFLGMMHFMDEYNYDVERVERCVIHYAMPDGRIVPFCTFNVIPELYRDKVQ 989
A+ FH TLFLGMMHFMD YNYD+ RV RC IHYA+PDGR+VPFC FNV+ ++YRD VQ
Sbjct: 492 AIKTFHKKTLFLGMMHFMDRYNYDITRVRRCNIHYALPDGRLVPFCAFNVLEDIYRDNVQ 551
Query: 990 RQFSYSWEEWKKLHPDWDYMKDKYVRTKEFVEKMKKSELYRKTYIDIVN 1038
++F+ + K L +KY R + +++++ +S +YR+ Y I++
Sbjct: 552 KRFAKA----KNLRIKGFNPGEKYDR-RRYIKRILESPIYREAYRGIID 595
Score = 108 bits (268), Expect = 3e-22
Identities = 64/173 (36%), Positives = 95/173 (53%), Gaps = 14/173 (8%)
Query: 46 GYGSPLP---------HRTYSLCPETRRVVPAVVWEKDGKVWITKKCPE-GMITDLYYED 95
G G PLP T S+CP R++PAV+ + G+++I KKCPE G I DLYY D
Sbjct: 38 GVGGPLPAVREGERLIRYTGSICPYCLRLLPAVIVARGGRLYIRKKCPEHGEIEDLYYGD 97
Query: 96 VELYYRFSRWKFEEKKLFSVNVENTGVN-CPFDCGLCARHRSHTSLLNIVLTNRCNLNCW 154
Y+R +W+ L T CP+ CGLC+ H +H++L+NIV+TNRC+L+C+
Sbjct: 98 ERFYWRQMKWEETGLGLSGAGPYTTATAPCPYACGLCSLHENHSALVNIVVTNRCDLSCF 157
Query: 155 YCFPPTEEAVFKFGDKVKIATF--EEVAKNFK-FEHKVEIDGFKGEYSIPNDL 204
YCF E A + + ++ F +VA+ + + V I GE ++ DL
Sbjct: 158 YCFFYAERAGYIYEPSIEQIKFMVRQVARQRQGSDVHVNIQITGGEPTVREDL 210
>pir||H69210 conserved hypothetical protein MTH831 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621921|gb|AAB85329.1| (AE000860) molybdenum cofactor
biosynthesis MoaA homolog [Methanobacterium
thermoautotrophicum]
Length = 497
Score = 340 bits (864), Expect = 4e-92
Identities = 179/396 (45%), Positives = 253/396 (63%), Gaps = 15/396 (3%)
Query: 611 CFFYAREGEPIYEPTLEQIRMMLRNAKKEHPIGANAVQFTGGEPTLRDDLIEIIKIAKEE 670
CF A IYEPT E+IR MLRN ++ P+ A+Q+ GGEPT+R D+++++K+A+EE
Sbjct: 110 CFANAAVSNYIYEPTYEEIREMLRNLRRNRPVPTPAIQYAGGEPTVRKDIVDLVKLAREE 169
Query: 671 GYDHVQLNTDGIKLAFDPELVKKIRQAGVNTLYLSYDGMTPQ----TNWKNHWEIPL-IF 725
G+ HVQ+ T+G++LA PEL ++R+AG+NT+YL +DG+T + + KN I L
Sbjct: 170 GFTHVQIATNGVRLARKPELAAELREAGLNTVYLQFDGVTEEPYITSRGKNLLPIKLQAI 229
Query: 726 ENVRKAGGPGIVLVPTLIRNVNDHEAGAIINFGLNHLDIVRGVNFQPISLVGRVPKKERQ 785
EN RK G GIVLVPTL+R +ND++ G II F ++++DI+RGVNFQP+S GR P +
Sbjct: 230 ENCRKV-GLGIVLVPTLVRGLNDNQVGDIIRFAIDNIDIIRGVNFQPVSFAGRTPADRVE 288
Query: 786 RFRITIAGAIKKIEEQTNGVISKDDWYPIPIAGHIARFFEVFTGS-KYYMTSHFACGAAT 844
RITI K +E QT IS DD+YP I+ F G + T H CG AT
Sbjct: 289 EQRITIPDFQKLVEAQTGSEISMDDFYPASSVRPISDFVAAIEGEPQVTFTCHQHCGTAT 348
Query: 845 YVFLDREEKKVIPIPRFLDVEGFVEFLLEKAEEIEKARFKGLAKLKAIGETVFIKFKQFY 904
Y+FL E+ K+IPI RF+DV+ F E L + +EIE+ AK + I + I+ +
Sbjct: 349 YIFL--EDDKIIPITRFIDVDRFFEVLEKGKDEIEEGGI--AAKARVIARSA-IELPKTL 403
Query: 905 DEKNAPKGLDVLGLIKNAFVHGNYDALGKFHMNTLFLGMMHFMDEYNYDVERVERCVIHY 964
D+ AP+ +D+ ++ + F +Y ALG+FH NTL + MHFMD +N+D++RV RCVIHY
Sbjct: 404 DKSEAPESVDIKRILTSIFKERSYTALGEFHYNTLLISCMHFMDPWNFDIDRVRRCVIHY 463
Query: 965 AMPDGRIVPFCTFNVIPELYRDKVQRQFSYSWEEWK 1000
A+PDGRIVPFCT N ++R V+R F+ E K
Sbjct: 464 ALPDGRIVPFCTMN---SIHRADVERHFAKPLNESK 496
Score = 88.9 bits (217), Expect = 3e-16
Identities = 45/105 (42%), Positives = 63/105 (59%), Gaps = 2/105 (1%)
Query: 54 RTYSLCPETRRVVPAVVWEKDGKVWITKKCPE-GMITDLYYEDVELYYRFSRWKFEEKKL 112
+T SLCPE R V A V+E +G+V I K+CPE G ++Y+ + ++Y++ + E + L
Sbjct: 8 KTRSLCPECLRPVDAEVFEDEGRVLIRKECPEHGKFENVYWSNSKIYHKAEEYDEEGEGL 67
Query: 113 FSVNVENTGVNCPFDCGLCARHRSHTSLLNIVLTNRCNLNCWYCF 157
+ + CP DCGLC H SHT L I +TNRCNL C CF
Sbjct: 68 LNPQTDPLK-GCPMDCGLCPEHESHTVLGLIDVTNRCNLKCPICF 111
>sp|Q58036|Y619_METJA HYPOTHETICAL PROTEIN MJ0619 >gi|2128410|pir||C64377 hypothetical
protein MJ0619 - Methanococcus jannaschii
>gi|1591330|gb|AAB98614.1| (U67510) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 506
Score = 336 bits (852), Expect = 9e-91
Identities = 179/401 (44%), Positives = 261/401 (64%), Gaps = 18/401 (4%)
Query: 611 CFFYAREGEPIYEPTLEQIRMMLRNAKKEHPIGANAVQFTGGEPTLRDDLIEIIKIAKEE 670
CF A + +YEP+ E I+ M+ N +KE P A+QF GGEPT+R DL E+IK+A++
Sbjct: 105 CFANANKSGKVYEPSFEDIKRMMENLRKEIP-PTPAIQFAGGEPTVRSDLPELIKLARDM 163
Query: 671 GYDHVQLNTDGIKLAFDPELVKKIRQAGVNTLYLSYDGMTPQ----TNWKNHWEIPL-IF 725
G+ HVQL T+GIKL + +KK+++AG++T+YL +DG++ + KN I +
Sbjct: 164 GFLHVQLATNGIKLK-NINYLKKLKEAGLSTIYLQFDGISEKPYLVARGKNLLPIKQKVI 222
Query: 726 ENVRKAGGPGIVLVPTLIRNVNDHEAGAIINFGLNHLDIVRGVNFQPISLVGRVPKKERQ 785
EN +K G +VLVPTL+R VND+E G II + ++D+VRG+NFQP+S GRV +K
Sbjct: 223 ENCKKVGFDSVVLVPTLVRGVNDNEVGGIIRYAAENVDVVRGINFQPVSFTGRVDEKTLL 282
Query: 786 RFRITIAGAIKKIEEQTNGVISKDDWYPIPIAGHIARFFEVFTGS-KYYMTSHFACGAAT 844
RITI IK +EEQT+G I+++D+YP+P I+ E T K ++SH CG +T
Sbjct: 283 EGRITIPDFIKLVEEQTDGEITEEDFYPVPSVAPISVLVEKLTNDRKPTLSSHQHCGTST 342
Query: 845 YVFLDREEKKVIPIPRFLDVEGFVEFLLEKAEEIEKARFKGLAKLKAIGETVFIKFKQFY 904
YVF+D E+ K+IPI RF+DVEGF+E + EK EEI K++ + +K +GE + +K
Sbjct: 343 YVFVD-EDGKLIPITRFIDVEGFLEIVKEKIEEIGKSK---MHDVKVLGE-IALKLPSLI 397
Query: 905 DEKNAPKGLDVLGLIK--NAFVHGNYDALGKFHMNTLFLGMMHFMDEYNYDVERVERCVI 962
D APK +++ +I + + +Y AL + H + L + MHFMD YN+DV+RV RC I
Sbjct: 398 DLDKAPKSVNIKKIIDLILSVLKSDYSALAELHYHMLMISCMHFMDAYNFDVKRVMRCCI 457
Query: 963 HYAMPDGRIVPFCTFNVIPELYRDKVQRQFSYSWEEWKKLH 1003
HYA PD RI+PFCT+N L+R +V+ +FS EEWK++H
Sbjct: 458 HYATPDDRIIPFCTYNT---LHRQEVEEKFSIPLEEWKRMH 495
Score = 108 bits (266), Expect = 5e-22
Identities = 57/131 (43%), Positives = 79/131 (59%), Gaps = 12/131 (9%)
Query: 54 RTYSLCPETRRVVPAVVWEKDGKVWITKKCPE-GMITDLYYEDVELYYRFSRWKFEEKKL 112
+T SLCP + +PA + E+DGK+ I K CPE G D+Y+ D ELY +F +++F K
Sbjct: 4 KTLSLCPICLKRIPATILEEDGKIIIKKTCPEHGEFKDIYWGDAELYKKFDKYEFIGK-- 61
Query: 113 FSVNVENTGVN--CPFDCGLCARHRSHTSLLNIVLTNRCNLNCWYCFPPTEEAVFKFGDK 170
+ V NT V CP+DCGLC H+S T L NI +TNRCNLNC CF ++ K
Sbjct: 62 --IEVTNTKVKNGCPYDCGLCPNHKSTTILANIDVTNRCNLNCPICFANANKS-----GK 114
Query: 171 VKIATFEEVAK 181
V +FE++ +
Sbjct: 115 VYEPSFEDIKR 125
>sp|Q58454|YA54_METJA HYPOTHETICAL PROTEIN MJ1054 >gi|2129344|pir||E64431 UDPglucose
6-dehydrogenase (EC 1.1.1.22) (intein-containing) -
Methanococcus jannaschii >gi|1591706|gb|AAB99056.1|
(U67548) UDP-glucose dehydrogenase, putative
[Methanococcus jannaschii]
Length = 895
Score = 152 bits (381), Expect = 2e-35
Identities = 130/481 (27%), Positives = 225/481 (46%), Gaps = 49/481 (10%)
Query: 156 CFPPTEEAVFKFGDKVKIATFEEVAKNFKFEHKVEIDGFKGEYSIPNDLYVLTFNDGKAE 215
CF P E G ++ TF+E+ F+ E K +++ +L+F+ K
Sbjct: 261 CFHPDEVLFIDRGRGLECITFKEL---FELEDK-------------DNVKILSFDGEKLS 304
Query: 216 WTRVTKFLRRKHEGKIRVIKTKTGRTIRTTPEHKFFVYKDGELVKKRADELEPGDELVLL 275
++ +R + + ++ GR I+ T +H + +DGEL K +++ GD+++L
Sbjct: 305 LKKLKLASKRYYNDDLITLRFNLGREIKITKDHPVVILEDGELKIKLTSDVKEGDKVILP 364
Query: 276 WRFESEETLTEINLLEAFKDLPQEEKEKVYVRGIKDLDLTPLKEKYGDKVYYWAR----- 330
+ EE EI++LE EK ++ + + + +K +K + +
Sbjct: 365 YGNFGEEREIEIDILEELSKTDLIEKVWIHNKDLATNEFNIIKPYLSNKYPHDVKRNGTI 424
Query: 331 --QDSMPLSVFYELNVDLDKEFRLGRDATTYELPSKLKITPSLAKLIGYFVSDGNYSDKD 388
+D +P+ + ++ F +TT +P K+KI A+LIGY++S+G + KD
Sbjct: 425 RAKDILPIKEILDKYGSKNRLFTAKSKSTT--IPYKIKIDKDFARLIGYYLSEG-WISKD 481
Query: 389 ------------LRITVGHEDVEKEIVNILEELGLPYSFLEWEGKTKQIVIGSRLLRLVF 436
L + E+ ++ NIL +LG+ Y +G + I+I S++L VF
Sbjct: 482 YGRNGVVRKRIGLCFGIHEEEYINDVKNILNKLGIKYIEKIKDG-SHSILISSKILAYVF 540
Query: 437 KHVFKIPEGAPNKRLPEGFLSFPFEAKVALLSGLFNGDGYVVR--GEHHLSIGYASTSKG 494
+++ NK +P + E K L GLF GDG +VR +L+I +A+ SK
Sbjct: 541 ENILNCGINCYNKNIPPQMFNAKEEIKWEFLKGLFRGDGGIVRLNNNKNLNIEFATVSKK 600
Query: 495 LIRDILYLLASLGIFARVYRVPKEKMKGANHDLYKLYIAGTDLVRLV-ELLELREGHREK 553
+ +L LL LGI A V + K + Y + I G + V+ + EL + + +
Sbjct: 601 MAHSLLILLQLLGIVASVKKCYNNK---STTMAYIIRINGLEQVKKIGELFGKKWENYKD 657
Query: 554 LGEIGNR--KPARVKKIADFYIDVVDEVSEEEYSGYVYDLEVENEGHSFVAADGILVSNC 611
+ E R +P KK +F I V E+ +E YSGYVY +E EN + + GIL+ NC
Sbjct: 658 IAESYKRNIEPLGYKKSDNFAILEVKEIIKEHYSGYVYSVETENS--LLITSYGILIHNC 715
Query: 612 F 612
F
Sbjct: 716 F 716
>dbj|BAA06142.2| (D29671) DNA-dependent DNA polymerase [Pyrococcus sp.]
Length = 1671
Score = 116 bits (289), Expect = 9e-25
Identities = 135/534 (25%), Positives = 227/534 (42%), Gaps = 111/534 (20%)
Query: 177 EEVAKNFKFEHKVEIDGFKGEYSIPNDLYVLTFN--DGKAEWTRVTKFLRRKHEGKIRVI 234
EE A K E + E+ G L V +FN KAE RV +R + GK+ I
Sbjct: 881 EENAGKVKREGETEVLEVSG-------LEVPSFNRRTNKAELKRVKALIRHDYSGKVYTI 933
Query: 235 KTKTGRTIRTTPEHKFFVYKDGELVKKRADELEPGDELVLLWRFESEETLTEINLLEAFK 294
+ K+GR I+ T H F ++GELV+ DEL+PGD + + R E E +NL+E
Sbjct: 934 RLKSGRRIKITSGHSLFSVRNGELVEVTGDELKPGDLVAVPRRLELPERNHVLNLVELLL 993
Query: 295 DLPQEEKEKV-----------------------------------YVRGIKDLDLTPLKE 319
P+EE + Y+R ++DL LK
Sbjct: 994 GTPEEETLDIVMTIPVKGKKNFFKGMLRTLRWIFGEEKRPRTARRYLRHLEDLGYVRLK- 1052
Query: 320 KYGDKVYYW----------------ARQDSMPLSVFYELNVDLD----------KEFRLG 353
K G +V W R + E N D KE+++G
Sbjct: 1053 KIGYEVLDWDSLKNYRRLYEALVENVRYNGNKREYLVEFNSIRDAVGIMPLKELKEWKIG 1112
Query: 354 RDATTYELPSKLKITPSLAKLIGYFVSDGNYSDKDLRITVGHE------DVEKEIVNILE 407
+ + +++ SLAKL+GY+VS+G Y+ K G + + E+++ +E
Sbjct: 1113 T-LNGFRMRKLIEVDESLAKLLGYYVSEG-YARKQRNPKNGWSYSVKLYNEDPEVLDDME 1170
Query: 408 ELGLPYSFLEWEGKTKQIVIGSRLLRLVFKHVFKIPEGAPNKRLPEGFLSFPFEAKVALL 467
L + G+ + I ++ L+F+++ + A NKR+PE + P ++A L
Sbjct: 1171 RLASRFFGKVRRGRN-YVEIPKKIGYLLFENMCGVL--AENKRIPEFVFTSPKGVRLAFL 1227
Query: 468 SGLFNGDGYVVRGEHHLSIGYASTSKGLIRDILYLLASLGIFA----------RVY---- 513
G F GDG V + + ++ S+ L ++ LL S+G+ A RVY
Sbjct: 1228 EGYFIGDGDVHPNKR---LRLSTKSELLANQLVLLLNSVGVSAVKLGHDSGVYRVYINEE 1284
Query: 514 ----RVPKEKMKGANHDLYKLYIAGTDLVRLVELLELREGHREKLGEIGNRKPARVKKIA 569
++ K+K +H + K ++ ++ V + K+ E G P + ++++
Sbjct: 1285 LPFVKLDKKKNAYYSHVIPKEVLS--EVFGKVFQKNVSPQTFRKMVEDGRLDPEKAQRLS 1342
Query: 570 -----DFYIDVVDEVSEEEYSGYVYDLEVENEGHSFVAADGILVSNCFFYAREG 618
D +D V+ V E+Y GYVYDL VE + +F+ G++ ++ +Y G
Sbjct: 1343 WLIEGDVVLDRVESVDVEDYDGYVYDLSVE-DNENFLVGFGLVYAHNSYYGYYG 1395
>sp|O59610|DPOL_PYRHO DNA POLYMERASE >gi|7446920|pir||C71210 probable DNA-directed DNA
polymerase - Pyrococcus horikoshii
>gi|3258391|dbj|BAA31074.1| (AP000007) 1235aa long
hypothetical DNA-directed DNA polymerase [Pyrococcus
horikoshii]
Length = 1235
Score = 112 bits (277), Expect = 2e-23
Identities = 142/545 (26%), Positives = 228/545 (41%), Gaps = 127/545 (23%)
Query: 133 RHRSHTSLLNIVLTNRCNLNCWYCFPPTEEAVF-KFGDKVKIATFEEVAKNFKFEHKVEI 191
R R+ L N +L + W E+ F K GD + EE A+ K + + EI
Sbjct: 483 RQRAIKILANSILPDE-----WLPIVENEKVRFVKIGDFID-REIEENAERVKRDGETEI 536
Query: 192 DGFKGEYSIPNDLYVLTFN--DGKAEWTRVTKFLRRKHEGKIRVIKTKTGRTIRTTPEHK 249
K DL L+FN K+E +V +R ++ GK+ IK K+GR I+ T H
Sbjct: 537 LEVK-------DLKALSFNRETKKSELKKVKALIRHRYSGKVYSIKLKSGRRIKITSGHS 589
Query: 250 FFVYKDGELVKKRADELEPGDELVLLWRFESEETLTEINLLEAFKDLPQEEKEKVY---- 305
F K+G+LVK R DEL+PGD +V+ R + E+ +NL+E LP+EE +
Sbjct: 590 LFSVKNGKLVKVRGDELKPGDLVVVPGRLKLPESKQVLNLVELLLKLPEEETSNIVMMIP 649
Query: 306 VRGIKDLDLTPLKEKY-----GDKVYYWARQ--------------------DSMPLSVFY 340
V+G K+ LK Y G++ R D L +
Sbjct: 650 VKGRKNFFKGMLKTLYWIFGEGERPRTAGRYLKHLERLGYVKLKRRGCEVLDWESLKRYR 709
Query: 341 ELNVDLDKEFRLGRDATTYELP-SKLKITPSLAKL---------------IGYFVSDGNY 384
+L L K + ++ Y + + L+ SL + IG F+ +
Sbjct: 710 KLYETLIKNLKYNGNSRAYMVEFNSLRDVVSLMPIEELKEWIIGEPRGPKIGTFIDVDDS 769
Query: 385 SDKDLRITVGHEDVEKEIV-------NILEELGLPYSFLEWEGKTKQ----IVIGSRLLR 433
K L + DVEK+ V N+LE++ L GK ++ I + ++
Sbjct: 770 FAKLLGYYISSGDVEKDRVKFHSKDQNVLEDIAKLAEKL--FGKVRRGRGYIEVSGKISH 827
Query: 434 LVFKHVFKIPEGAPNKRLPEGFLSFPFEAKVALLSGLFNGDGYVVRGEHHLSIGYASTSK 493
+F+ + A KR+PE + P + KVA L GL NG+ + +++ S+
Sbjct: 828 AIFRVL------AEGKRIPEFIFTSPMDIKVAFLKGL-NGNAE--------ELTFSTKSE 872
Query: 494 GLIRDILYLLASLGIFARVYRVPKEKMKGANHDLYKLYIAGTDLVRLVELLELREGHREK 553
L+ ++ LL S+G V + E KG +Y++YI
Sbjct: 873 LLVNQLILLLNSIG----VSDIKIEHEKG----VYRVYI--------------------- 903
Query: 554 LGEIGNRKPARVKKIADFYIDVVDEVSEEEYSGYVYDLEVENEGHSFVAADGILVSNCFF 613
N+K + D +D V+ + E+Y GYVYDL VE + +F+ G+L ++ +
Sbjct: 904 -----NKKES---SNGDIVLDSVESIEVEKYEGYVYDLSVE-DNENFLVGFGLLYAHNSY 954
Query: 614 YAREG 618
Y G
Sbjct: 955 YGYYG 959
>pir||B70797 probable transferase - Mycobacterium tuberculosis (strain H37RV)
>gi|2960153|emb|CAA18051.1| (AL022121) hypothetical
protein Rv3729 [Mycobacterium tuberculosis]
Length = 776
Score = 104 bits (257), Expect = 5e-21
Identities = 89/359 (24%), Positives = 163/359 (44%), Gaps = 47/359 (13%)
Query: 647 VQFTGGEPTLRDDLIEIIKIAKEEGYDHVQLNTDGIKLAFDPELVKKI----RQAGVNTL 702
V F+GGEPT+ L+E + A+ V +NT+GI+LA D V ++ R +
Sbjct: 142 VMFSGGEPTIHKQLLEFVDAAQARPVKTVIINTNGIRLASDRRFVDQLATRNRPGHPVHI 201
Query: 703 YLSYDGMTPQTNWK----NHWEIPLIFENVRKAGGPGIVLVPTLIRNVNDHEAGAIINFG 758
YL +DG+ T+ + + ++ + A G + LV + R +N+HE GA+I G
Sbjct: 202 YLQFDGLDEATHRRIRGHDLRDVKQRALDNCAAAGLTVSLVAAVERGLNEHELGAVIRHG 261
Query: 759 LNHLDIVRGVNFQPISLVGRVPKKERQRFRITIAGAIKKIEEQTNGVISKDDWYPIPIAG 818
+ V+ V FQP++ GR + + R+T + I I Q D++P+P
Sbjct: 262 MAQPG-VQPVVFQPVTHAGRHVQFD-PLTRLTNSDIIACITAQLPEWFRPGDFFPVPCC- 318
Query: 819 HIARFFEVFTGSKYYMTSHFACGAATYVFLDREEKKVIPIPRFLDVEGFVEFLLEKA--E 876
+C + TY+ D E V+PIPR L+VE +++++ + +
Sbjct: 319 ------------------FPSCRSITYLLTDGEH--VVPIPRLLNVEDYLDYVSNRVIPD 358
Query: 877 EIEKARFKGLAKLKAI--GETVFIKFKQFYDEKNAPKGLDVLGLIKNAFVHGNYDALGKF 934
+ + L A+ +T+ + ++ N +G + +AL
Sbjct: 359 LAIREALENLWSASAVPGTDTMTAQLQRATAALNCAEGCGI----------NLPEALTHL 408
Query: 935 HMNTLFLGMMHFMDEYNYDVERVERCVIHYAMPDGRIVPFCTFNVIPELYRDKVQRQFS 993
+ + F D Y +V+++ +C + PDGR++PFC +N + YR++V+ Q +
Sbjct: 409 TDRVFAIVIQDFQDPYTLNVKQLMKCCVQQITPDGRLIPFCAYNSVG--YREQVREQLT 465
>sp|Q51334|DPOL_PYRSD DNA POLYMERASE (DEEP VENT DNA POLYMERASE) [CONTAINS: PI-PSP I
ENDONUCLEASE] >gi|2129416|pir||S68593 DNA-directed DNA
polymerase (EC 2.7.7.7) Vent, intein containing precursor
- Pyrococcus sp >gi|825735|gb|AAA67130.1| (U00707) Deep
Vent DNA polymerase and PI-PspI precursor [Pyrococcus
sp.]
Length = 1312
Score = 94.8 bits (232), Expect = 5e-18
Identities = 115/492 (23%), Positives = 206/492 (41%), Gaps = 94/492 (19%)
Query: 213 KAEWTRVTKFLRRKHEGKIRVIKTKTGRTIRTTPEHKFFVYKDGELVKKRADELEPGDEL 272
KA V +R ++ G + I +GR I T H FVY++G+LV+ ++++ GD L
Sbjct: 553 KARVMAVKAVIRHRYSGNVYRIVLNSGRKITITEGHSLFVYRNGDLVEATGEDVKIGDLL 612
Query: 273 VLLWRFESEETLTEINLLEAFKDLPQEEKEKV---------------------------- 304
+ E +N++E +L EE E +
Sbjct: 613 AVPRSVNLPEKRERLNIVELLLNLSPEETEDIILTIPVKGRKNFFKGMLRTLRWIFGEEK 672
Query: 305 -------YVRGIKDLDLTPLK------------EKYG---DKVYYWARQDSMPLSVFYEL 342
Y+R +++L L+ EKY +K+ R + E
Sbjct: 673 RVRTASRYLRHLENLGYIRLRKIGYDIIDKEGLEKYRTLYEKLVDVVRYNGNKREYLVEF 732
Query: 343 NVDLD----------KEFRLGRDATTYELPSKLKITPSLAKLIGYFVSDGNY-----SDK 387
N D KE+R+G + + + + I AKL+GY+VS+G+
Sbjct: 733 NAVRDVISLMPEEELKEWRIGT-RNGFRMGTFVDIDEDFAKLLGYYVSEGSARKWKNQTG 791
Query: 388 DLRITVGHEDVEKEIVNILEELGLPYSFLEWEGKTKQIVIGSRLLRLVFKHVFKIPEGAP 447
TV + E+++ +E L + GK + I ++ ++F+ + A
Sbjct: 792 GWSYTVRLYNENDEVLDDMEHLAKKFFGKVKRGKN-YVEIPKKMAYIIFESLCGTL--AE 848
Query: 448 NKRLPEGFLSFPFEAKVALLSGLFNGDGYVVRGEHHLSIGYASTSKGLIRDILYLLASLG 507
NKR+PE + + A L G F GDG V + + ++ S+ L+ ++ LL SLG
Sbjct: 849 NKRVPEVIFTSSKGVRWAFLEGYFIGDGDVHPSKR---VRLSTKSELLVNGLVLLLNSLG 905
Query: 508 IFA-------RVYRV-PKEKMKGANH----DLYKLYIAGTDLVRLV--ELLELREGHRE- 552
+ A VYRV E++K + ++Y +I D+++ ++ + +++
Sbjct: 906 VSAIKLGYDSGVYRVYVNEELKFTEYRKKKNVYHSHIVPKDILKETFGKVFQKNISYKKF 965
Query: 553 ----KLGEIGNRKPARVKKI--ADFYIDVVDEVSEEEYSGYVYDLEVENEGHSFVAADGI 606
+ G++ K R++ + D +D V E+ E Y GYVYDL V+ E +F+A G
Sbjct: 966 RELVENGKLDREKAKRIEWLLNGDIVLDRVVEIKREYYDGYVYDLSVD-EDENFLAGFGF 1024
Query: 607 LVSNCFFYAREG 618
L ++ +Y G
Sbjct: 1025 LYAHNSYYGYYG 1036
>sp|Q58242|Y832_METJA HYPOTHETICAL PROTEIN MJ0832 >gi|2129243|pir||H64403
ribonucleoside-triphosphate reductase (EC 1.17.4.2),
anaerobic (intein-containing) - Methanococcus jannaschii
>gi|1591520|gb|AAB98834.1| (U67527) anaerobic
ribonucleoside-triphosphate reductase (nrdD)
[Methanococcus jannaschii]
Length = 1750
Score = 88.2 bits (215), Expect = 4e-16
Identities = 110/455 (24%), Positives = 215/455 (47%), Gaps = 52/455 (11%)
Query: 159 PTEEAVFKFGDK----VKIATFEEVAKNFKFEHKVEIDGFKGEYSIPND-LYVLTFN-DG 212
P +E + F + VKI F E N + + E I ++ +Y +F+ DG
Sbjct: 1061 PYDEKILIFENNEYKLVKIGEFVEKYLNRYKDRAITYGDNNIEVYIKDENIYAPSFDKDG 1120
Query: 213 KAEWTRVTKFLRRKHEGK-IRVIKTKTGRTIRTTPEHKFFVYKDG-ELVKKRADELEPGD 270
K +T +R H GK I I+ ++G+ +R T +H F D ++V+ +A +L+ GD
Sbjct: 1121 KIVLKPITHAIR--HRGKEIYEIELESGKKVRVTGDHSVFTINDNLDVVEVKASDLKVGD 1178
Query: 271 ELVLLWRFESEETLTEINLLEAFKDLPQEEKEKVYVRGIKDL------DLTPLKEKYGDK 324
++ + + + I+ + + + K+K YV+ IKD LKE Y +
Sbjct: 1179 FII------TPKIIPSISKDKIYLSEIVKNKDKYYVK-IKDHIKFIEEHEEILKESYKEY 1231
Query: 325 VYYWA-------RQDSMPLSVFYELNVDLDKEFRLGRDATTYELPSKLKITPSLAKLIGY 377
W ++++ L + +L VD +K ++ Y + +K+K+ LIG
Sbjct: 1232 KTKWKDLKPVLKKKNAFRLDLIEDL-VDKEKIEKISYGHANY-INNKIKLDEKFGYLIGA 1289
Query: 378 FVSDGNYSDKDLRITVGHEDVEKEIVNILEE-LGLPYSFLEWEGKTKQ----IVIG-SRL 431
F+S+G+++DK + I+ +++ + +V I+EE LG ++ +G ++ VIG ++
Sbjct: 1290 FLSEGHWNDKCVEISSTNKEFIENLVEIIEEILGKDAYYITVKGDKRRYKDLYVIGLNKT 1349
Query: 432 LRLVFKHVFKIPEGAPNKRLPEGFLSFPFEAKVALLSGLFNGDG--YVVRGEHHLSIGYA 489
+ ++F+ + + + + NK +P LS K L+ G +GDG YV + SI
Sbjct: 1350 VAMIFESL-GLNKLSSNKEIPSILLSNETFLK-GLIKGYIDGDGSIYVDESKRDYSIRLY 1407
Query: 490 STSKGLIRDILYLLASLGIFARVYRVPKEKMKGANHDLYKLYIAGTDLVRLVELLELREG 549
+TS+ L + L LGI R+ K K+ D Y + I G + + + +E++
Sbjct: 1408 TTSETLRDTLCLALKILGINYRLSIDKKSKVNENWRDCYVIKITGKENIEKLLDVEIKNN 1467
Query: 550 HREKLGEIGNRKPARVKKIADFYIDVVDEVSEEEY 584
+ + + KIA+ + +++++ S+ E+
Sbjct: 1468 GGKDV----------IPKIAEKFKEIINQYSQREW 1492
Score = 83.1 bits (202), Expect = 1e-14
Identities = 88/348 (25%), Positives = 147/348 (41%), Gaps = 84/348 (24%)
Query: 338 VFYELNVDLDKEFRLG--------RDATTY-----ELPSKLKITPSLAKLIGYFVSDGNY 384
+ N D E+R+G R + Y ++P KLKIT L + +G FV++G+Y
Sbjct: 458 IIRNFNNPYDVEYRIGDYIETNYQRTDSKYNSRQNDIPEKLKITKELCQFLGLFVAEGSY 517
Query: 385 SDKDLRITVGHEDVEKEIVN-ILEELGLPYSFLEWEGKTKQIVIGSRLLRLVFKHVFKIP 443
+ IT +D+ K I + E++ + +E + + R + +H I
Sbjct: 518 ITNGISITTKDDDIAKFIERFVKEQINENIAVKRYEDSVR--FVNKGFYRFLKEH---IN 572
Query: 444 EGAPNKRLPEGFLSFPFEAKVALLSGLFNGDGYVVRGEHHLSIGYASTSKGLIRDILYLL 503
A NK PE L E K+A L GL +GDGYV + + +TS+ L+ + LL
Sbjct: 573 GKAINKNSPEFILKGDKEMKLAFLGGLISGDGYVSKDGR---VQIYTTSEQLLGQLHLLL 629
Query: 504 ASLGIFARVYRVPKEKMKGANHDL--------YKLYIA------------------GTDL 537
+ LG+ +Y + K K +G ++ YKLY+ +
Sbjct: 630 SDLGM---IYSITKIKEEGEKIEIKRNEIVRNYKLYVIEIAKNCTEDLKPYVIPKYKKER 686
Query: 538 VRLVELLELREGHR---EKLGEIGNRKPAR--------------------------VKKI 568
++ +L +R E L +I ++KP ++I
Sbjct: 687 IKPANYDQLPYDYRIIKEHLRKITDKKPYNDYAWKSNNRKLKLNTLEKIEQLNPHLREEI 746
Query: 569 ADFYIDV---VDEVSEEEYSGYVYDLEVENEGHSFVAADGILVSNCFF 613
F +++ + E+ E +Y+GYVYDL VE + +F+ A GIL N F
Sbjct: 747 NKFKLNIPFEIKEIKEIDYNGYVYDLSVE-DNENFITATGILCHNTIF 793
>emb|CAC18555.1| (AJ245819) DNA polymerase and endonucleases [Thermococcus
hydrothermalis]
Length = 1668
Score = 84.7 bits (206), Expect = 5e-15
Identities = 122/493 (24%), Positives = 195/493 (38%), Gaps = 96/493 (19%)
Query: 213 KAEWTRVTKFLRRKHEGKIRVIKTKTGRTIRTTPEHKFFVYKDGELVKKRADELEPGDEL 272
KA V +R ++ G + I +GR I T H F Y DGEL + E++ GD L
Sbjct: 519 KARVMPVKAVIRHRYSGDVYEIVLGSGRRITVTEGHSLFAYGDGELREVTGGEIKAGDLL 578
Query: 273 V------------------LLWRFESEETLTEI-------------NLLEAFKDLPQEEK 301
LL R EET I +L + + EEK
Sbjct: 579 AVPRRVNLPEKKERLNLVELLRRLPEEETGDIILTIPVKGRKNFFKGMLRTLRWISGEEK 638
Query: 302 E----KVYVRGIKDLDLTPLKE---------------KYGDKVYYWARQDSMPLSVFYEL 342
+ Y+ ++ L LK+ K +++ R + E
Sbjct: 639 RPRTARRYLEHLEGLGYVRLKKIGYEVTDREGLERYRKLYERLVEAVRYNGNKREYLVEF 698
Query: 343 NVDLD-------KEFR--LGRDATTYELPSKLKITPSLAKLIGYFVSDGNY-----SDKD 388
N D +E R L + + ++I AKL+GY+VS+GN
Sbjct: 699 NAVRDVIALMPEEELRDWLVGTRNGFRMRPFVEIEEDFAKLLGYYVSEGNARKWRNQKNG 758
Query: 389 LRITVGHEDVEKEIVNILEELGLPYSFLEWEGKTKQIVIGSRLLRLVFKHVFKIPEGAPN 448
TV + + +++ +E L + GK I I ++ ++F+++ A N
Sbjct: 759 WSYTVKLYNENQRVLDDMESLAERFFGRVKRGKN-YIEIPRKMAYIIFENLCGTL--AEN 815
Query: 449 KRLPEGFLSFPFEAKVALLSGLFNGDGYVVRGEHHLSIGYASTSKGLIRDILYLLASLGI 508
KR+PE + P + A + G F GDG V + + ++ S+ L+ ++ LL SLG+
Sbjct: 816 KRVPEAIFTSPESVRWAFIEGYFIGDGDVHPSKR---VRLSTKSELLVNGLVLLLNSLGV 872
Query: 509 FA-------RVYRV-----------PKEKMKGANHDLYKLYIA---GTDLVRLVELLELR 547
A VYRV K+K +H + K + G R V + R
Sbjct: 873 SAIKIRHDSGVYRVYVNEELPFTDYRKKKNAYYSHVIPKEILEETFGKVFQRSVSYEKFR 932
Query: 548 EGHREKLGEIGNRKPARVKKI--ADFYIDVVDEVSEEEYSGYVYDLEVENEGHSFVAADG 605
E K ++ K R++ + D +D V EV + Y GYVYDL VE E +F+A G
Sbjct: 933 E--LVKSEKLDGEKAKRIEWLLNGDVVLDKVLEVKKRPYEGYVYDLSVE-EDENFLAGFG 989
Query: 606 ILVSNCFFYAREG 618
+L ++ +Y G
Sbjct: 990 LLYAHNSYYGYYG 1002
Score = 72.6 bits (175), Expect = 2e-11
Identities = 69/255 (27%), Positives = 114/255 (44%), Gaps = 16/255 (6%)
Query: 367 ITPSLAKLIGYFVSDGNYSDKD--------LRITVGHEDVEKEIVNILEELGLPYSFLEW 418
I L +LIG V DGN+ + L + + E++E++I+ L+ G+ ++ +
Sbjct: 1184 IAVKLWELIGLLVGDGNWGGQSNWAKYNVGLSLGLDKEEIEEKILKPLKNTGIISNYYDK 1243
Query: 419 EGKTKQIVIGSRLLRLVFKHVFKIPEGAPNKRLPEGFLSFPFEAKVALLSGLFNGDGYVV 478
K ++ L R + ++ FK G+ KR+PE + P E A L GLF+ DG V
Sbjct: 1244 SKKGDVSILSKWLARFMVRY-FKDESGS--KRIPEFMFNLPREYIEAFLRGLFSADGTVS 1300
Query: 479 RGEHHLSIGYASTSKGLIRDILYLLASLGIFARVY-RVPKEKMKGANHDLYKLYIAGTDL 537
+ + S + L + LL +G+ ++ + G + +++ D
Sbjct: 1301 LRKGVPEVRLTSVNPELSSSVRKLLWLVGVSNSMFVETNPNRYLGKESGTHSVHVRIKDK 1360
Query: 538 VRLVELLE-LREGHREKLGE-IGNRKPARVKKIADFYIDVVDEVSEEEYSGYVYDLEVEN 595
R E + L + KL E +G + DF + +V E Y GYVYD+EVE
Sbjct: 1361 HRFAERIGFLLDRKATKLSENLGGHTSKKRAYKYDFDLVYPKKVEEIAYDGYVYDIEVEG 1420
Query: 596 EGHSFVAADGILVSN 610
F A+GILV N
Sbjct: 1421 THRFF--ANGILVHN 1433
>pir||B72665 hypothetical protein APE0745 - Aeropyrum pernix (strain K1)
>gi|5104407|dbj|BAA79722.1| (AP000060) 726aa long
hypothetical protein [Aeropyrum pernix]
Length = 726
Score = 84.3 bits (205), Expect = 7e-15
Identities = 116/497 (23%), Positives = 193/497 (38%), Gaps = 69/497 (13%)
Query: 158 PPTEEAVFKFGDKVKIATFEEVAKNF-KFEHKVEIDGFKGEYSIPNDLYVLTFNDGKAEW 216
PP E V + GD+V++ + E +F + E ++I G G Y++ D L K W
Sbjct: 178 PPWEPIVVRRGDEVRVTSIGEFVDSFLEGEGGLDIGGL-GYYTLSLDTRTL-----KPVW 231
Query: 217 TRVTKFLRRKHEGKIRVIKTKTGRTIRTTPEHKFF-VYKDGELVKKRADELEPGDELVLL 275
R+ ++ + G++ +K GR+I T H + + + G L + +L PGD LV
Sbjct: 232 RRIRGVIKHRIRGRLLRVKASKGRSIDLTGSHSIYRISRGGGLEVVGSSDLRPGDSLVTP 291
Query: 276 WRFESEETLTEINLLEAFKDLPQEEKEKVYVRGIKD-------------------LDLTP 316
E E+ + + A ++L E ++V G+ + L
Sbjct: 292 ASVELPESAP--SSINAARELWSRGVEGIFVVGLPGEAAGYRGVERSRGYDGGHAIPLET 349
Query: 317 LKEKYGDKVYYWARQDSMPLSVFYELNVDLDKEFRLGRDATTYELPSKLKITPSLAKLIG 376
L E+YGD V W+ L+V A + +P+ + + L+G
Sbjct: 350 LVERYGDSV--WSLVSGAKLAVSRGA-------------AGDHPVPATIPLDTGFYLLLG 394
Query: 377 YFVSDGNYSDKDLRITV----GHEDVEKEIVNILEELGLPYSFLEWEG-KTKQIVIGSRL 431
+ VS G+ + +TV G E ++V + G + ++ I SR+
Sbjct: 395 FIVSAGSVDVEGGHVTVTLGPGREGYVGDVVEAVNSTAPGAGVRISSGARGMEVTIRSRV 454
Query: 432 LRLVFKHVFKIPEGAPNKRLPEGFLSFPFEAKVALLSGLFNGDGYVVRGEHHLSIGYAST 491
L + VF G PN+ +P P K L GL+ G G R S+ YA+
Sbjct: 455 LSELLARVFGAGPG-PNRDIPSIVFRAPKPMKRVFLKGLYAGGGVFDRSSG--SLIYATD 511
Query: 492 SKGLIRDILYLLASLGIFARVYRVPK--------------EKMKGANHDLYKL-YIAGTD 536
S+ L+ + LL ++G A YR+ ++ L L + G +
Sbjct: 512 SRSLLNGLALLLLNVG--AGGYRIDSGDSGRALALIVENAGRLDAIGEVLEHLGFHGGRE 569
Query: 537 LVRLVELLELREGHREKLGEIGNRKPARVKKIADFYIDVVDEVSEEEYSGYVYDLEVENE 596
V+ V LE + ++PA V E + +VYDL VE +
Sbjct: 570 AVQGVGALERATAGLAGQATVAVQRPATRGGPGVDVAGVTGLEHLEASTEFVYDLSVEGD 629
Query: 597 GHSFVAADGILVSNCFF 613
+ F ILV N F
Sbjct: 630 ENFFAGLGWILVHNSAF 646
>sp|Q58815|YE20_METJA HYPOTHETICAL PROTEIN MJ1420 >gi|2127939|pir||C64477
glutamine--fructose-6-phosphate transaminase
(isomerizing) (EC 2.6.1.16) (intein-containing) -
Methanococcus jannaschii >gi|1592069|gb|AAB99430.1|
(U67582) glucosamine--fructose-6-phosphate
aminotransferase (isomerizing) (glmS) [Methanococcus
jannaschii]
Length = 1102
Score = 76.9 bits (186), Expect = 1e-12
Identities = 108/419 (25%), Positives = 184/419 (43%), Gaps = 65/419 (15%)
Query: 170 KVKIATFEEVAKNFKFEHKVEIDGFKG-EYSIPNDLYVL--------------------T 208
K + EEVAK +F ++IDG G + + D YV+
Sbjct: 48 KKNVGKVEEVAKKERF---LDIDGNIGIGHCLHPDTYVILPDGRMKKISEIDEDEVLSVN 104
Query: 209 FNDGKAEWTRVTKFLRRKHEGKIRVIKTKTGRT-IRTTPEHKFFVYKDGELVKKRADELE 267
F D K ++ KF KH+ + K KT + + TT EHK FV ++G++V+K +L
Sbjct: 105 FEDLKLYNKKIKKF---KHKAPKILYKIKTAFSELITTGEHKLFVVENGKIVEKCVKDLN 161
Query: 268 PGDELV-----LLWRFESEETLTEINLLEAFKDLPQEEKEKV-YVRGIKDLDLTPLKEKY 321
G EL+ L + F ++ + +K L + + K+ VR L +++
Sbjct: 162 -GSELIGVVRKLNYSFNDNVEFKDVYVERHYK-LDETIRNKLRKVREKLGLTRKDVEKLC 219
Query: 322 GDKVYYWARQDSMPLSVFYELNV-------DLDKEFRLGRDATTYELPSKLKITPS--LA 372
G K Y + ++ L E + ++ E + RD Y P K TP+ L
Sbjct: 220 GVKEIYIVKIETGKLESIEEERLKKLCSLYGINFEEIIYRDNLHYTNPVKFPKTPTPELM 279
Query: 373 KLIGYFVSDGNY-SDKDLRITVGHEDVEKEIVNILEEL-GLPYSFLEWEGKTKQIVIGSR 430
++IGY + DG++ S++ LR+ ++V +E + + + L + + +G + I S+
Sbjct: 280 QIIGYIIGDGHFPSNRMLRLKDERKEVLEEYNQLFKTVFNLEGNIKKGDGNYYILEINSK 339
Query: 431 LLRLVFKHVFKIPE---GAPNKRLPEGFLSFPFEAKVALLSGLFNGDGYVVRGEHHLSIG 487
L F+ IPE N+R PE + + L G+F+ +GY +R E IG
Sbjct: 340 YLIDWFRE--NIPELFNKTGNERTPEFVFRLNNDLVASYLRGIFDAEGY-IRAEAK-QIG 395
Query: 488 YASTSKGLIRDILYLLASLGIFARVYRVPKEKMKGAN-----------HDLYKLYIAGT 535
TSK I++I +LL GI A ++ +++ N +L+K YI T
Sbjct: 396 IGMTSKCFIKEIQFLLLRFGILASYSKIKRKEENWNNTHKLLISDKKSFELFKKYIGFT 454
>pir||C71110 hypothetical protein PH0650 - Pyrococcus horikoshii
>gi|3257058|dbj|BAA29741.1| (AP000003) 1136aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 1136
Score = 76.9 bits (186), Expect = 1e-12
Identities = 87/365 (23%), Positives = 152/365 (40%), Gaps = 56/365 (15%)
Query: 224 RRKHEG-KIRVIKTKTGRTIRTTPEHKFFVYKDGELVKKRADELEPGDELVLLWRFESEE 282
RR EG K+ IKT+TG + T H F + +G++V+K A L+ GD + ++
Sbjct: 523 RRVREGEKLIRIKTRTGNEVILTRSHPLFAFSNGDVVRKEAGNLKVGDRVAVMMNPPKPP 582
Query: 283 TLTEINLLEAFKDLPQEEKEKVYVRGIKDLDLTPLKEKYGDKVYYWARQDSMPLSVFYEL 342
+ L + + + V K + P K +K Y +S P+ + E+
Sbjct: 583 QTKAVVDLSIYAKI----SDYYLVPNGKGMIKVPNKGLPPEKAQYLVSVNSHPVKLVREV 638
Query: 343 NVDLDKEFRLGRDATTYELPSKLKITPSLAKLIGYFVSDGNYSDKDLRITVGHEDVEKEI 402
+ KL + GY S+G Y + T ED +
Sbjct: 639 D-------------------EKLSYLAGVILGDGYISSNGYY----ISATFDDEDYMEAF 675
Query: 403 VNILEELGLPY-SFLEWEGKTKQIVIGSRLLRLVFKHVFKIPEGAPNK-RLPEGFLSFPF 460
V+++ + Y ++ GK + +GS++ + +F IP+G + +P+ LS
Sbjct: 676 VSVISDFIPNYIPNVKENGKYMVVTVGSKIFAEMLSRIFGIPKGRKLEWDVPDIVLSND- 734
Query: 461 EAKVALLSGLFNGDGYVVRGEHHLSIGYASTSKGLIRDILYLLASLGIFARVYRVPKEKM 520
+ ++GLF+ DGYV SI + S+ + R I Y L LGI + V RV +
Sbjct: 735 DLMRYFIAGLFDADGYVDEN----SIILVTKSENVARKIWYALQRLGIISTVSRVKNKGF 790
Query: 521 KGANHDLYKLYIAGTD----------------LVRLVELLELREGHREKLGEIGNRKPAR 564
K +++++ I+G D +L+E+L+ ++ HR G R P
Sbjct: 791 K--EGEIFRVIISGVDDLAKFARSIPLHHSRKRAKLMEVLKTKKTHR---GRRAYRVPIS 845
Query: 565 VKKIA 569
+ IA
Sbjct: 846 AEMIA 850
>sp|Q58446|RPA2_METJA DNA-DIRECTED RNA POLYMERASE SUBUNIT A" >gi|2127865|pir||B64430
DNA-directed RNA polymerase (EC 2.7.7.6) subunit A''
(intein-containing) - Methanococcus jannaschii
>gi|1591697|gb|AAB99047.1| (U67547) DNA-directed RNA
polymerase, subunit A'' (rpoA2) [Methanococcus
jannaschii]
Length = 859
Score = 76.9 bits (186), Expect = 1e-12
Identities = 88/363 (24%), Positives = 148/363 (40%), Gaps = 68/363 (18%)
Query: 158 PPTEEAVFKFGDKVKIATF----EEVAKNFKFEHKVEIDGFKGEYSIPNDLYVLTFN-DG 212
P E+ + K G+ +K +E+ + F FE K+ G +P D+Y L+ + D
Sbjct: 78 PYEEKIIIKEGEFIKPVEIGKLVDEMIERFGFE-KI---GNSEVCDLPIDIYALSLDQDE 133
Query: 213 KAEWTRVTKFLRRKHEGKIRVIKTKTGRTIRTTPEHKFFVYKDGELVKKRADELEPGDEL 272
K W R+ +R KH GK+ IKTK+GR I TP H F + KD +++ + EL+ GD +
Sbjct: 134 KVHWKRIISCIRHKHNGKLIKIKTKSGREITATPYHSFVIRKDNKIIPVKGSELKIGDRI 193
Query: 273 VLLWRFESEETLTEINLLEAFKDLPQEEKEKVYVRGIKDLDLTPLKEKYGDKVYYWARQD 332
++ + + IN+ + YV G +D + K K+
Sbjct: 194 PVVKHIPA-NCVEAINISD-------------YVSGNYVVD--NINNKIAPKI------- 230
Query: 333 SMPLSVFYELNVDLDKEFRLGRDATTYELPSKLKITPSLAKLIGYFVSDGNYSDKDLRIT 392
+P+ +K+ IG ++++G+ + + I+
Sbjct: 231 ------------------------NGKSIPNNIKLDYDFGYFIGIYLAEGSVTKYFVSIS 266
Query: 393 VGHEDVEKEIVNILEELGLPYSFLEWE-----GKTKQIVIGSRLLRLVFKHVFKIPEGAP 447
E + +I ++LGL Y E++ ++ I I S L + + +
Sbjct: 267 NVDELILNKIRAFADKLGLNYG--EYDNNNGFAESHDIRIYSSTLA---EFLSNFGTSSN 321
Query: 448 NKRLPEGFLSFPFEAKVALLSGLFNGDGYVVRGEHHLSIGYASTSKGLIRDILYLLASLG 507
K++ E E L+ G F+GDG V I S SK LI I LLA
Sbjct: 322 TKKIAEFVFGANKEFVRGLIRGYFDGDGNV--NADRKVIRVTSNSKELIDGIAILLARFN 379
Query: 508 IFA 510
IF+
Sbjct: 380 IFS 382
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.141 0.422
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 418879563
Number of Sequences: 2977
Number of extensions: 19690237
Number of successful extensions: 47695
Number of sequences better than 1.0e-10: 19
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 47589
Number of HSP's gapped (non-prelim): 48
length of query: 1042
length of database: 189,106,746
effective HSP length: 56
effective length of query: 986
effective length of database: 155,591,474
effective search space: 153413193364
effective search space used: 153413193364
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 170 (70.6 bits)