BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1900 (PAB1900) DE:Hypothetical protein
(394 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F75112 hypothetical protein PAB1900 - Pyrococcus abyssi (st... 811 0.0
pir||A71021 hypothetical protein PH1462 - Pyrococcus horikoshii ... 681 0.0
pir||H72393 hypothetical protein TM0307 - Thermotoga maritima (s... 136 4e-31
>pir||F75112 hypothetical protein PAB1900 - Pyrococcus abyssi (strain Orsay)
>gi|5458126|emb|CAB49615.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 394
Score = 811 bits (2072), Expect = 0.0
Identities = 394/394 (100%), Positives = 394/394 (100%)
Query: 1 MVTYFLKEANVPILLYADGDPNWAGATCVTSVGASLWETSINEHAIRHVRVIGDLELVKS 60
MVTYFLKEANVPILLYADGDPNWAGATCVTSVGASLWETSINEHAIRHVRVIGDLELVKS
Sbjct: 1 MVTYFLKEANVPILLYADGDPNWAGATCVTSVGASLWETSINEHAIRHVRVIGDLELVKS 60
Query: 61 WVRAVEAVDKLSKGSILLLGGTYTLGMEHLMDDIPKLKKFVGDFIMLDQYAIIKEGEEVE 120
WVRAVEAVDKLSKGSILLLGGTYTLGMEHLMDDIPKLKKFVGDFIMLDQYAIIKEGEEVE
Sbjct: 61 WVRAVEAVDKLSKGSILLLGGTYTLGMEHLMDDIPKLKKFVGDFIMLDQYAIIKEGEEVE 120
Query: 121 DGDVERFYEWLLSKAKVKFDGKMLTPEVLKRQIRLYLGAKRIWDKRREEIIGLSVKCQPE 180
DGDVERFYEWLLSKAKVKFDGKMLTPEVLKRQIRLYLGAKRIWDKRREEIIGLSVKCQPE
Sbjct: 121 DGDVERFYEWLLSKAKVKFDGKMLTPEVLKRQIRLYLGAKRIWDKRREEIIGLSVKCQPE 180
Query: 181 LSEIYGVTACTIPAFFPFNRDAFGDKPIVPATCEGDIKGTITSALLYYISNKPPLFGDIK 240
LSEIYGVTACTIPAFFPFNRDAFGDKPIVPATCEGDIKGTITSALLYYISNKPPLFGDIK
Sbjct: 181 LSEIYGVTACTIPAFFPFNRDAFGDKPIVPATCEGDIKGTITSALLYYISNKPPLFGDIK 240
Query: 241 YVDDDIVIIANCGASSLYYARMSDDPEENLKATTIQGQCQGKSGGAFTYRTPPGEFTVAR 300
YVDDDIVIIANCGASSLYYARMSDDPEENLKATTIQGQCQGKSGGAFTYRTPPGEFTVAR
Sbjct: 241 YVDDDIVIIANCGASSLYYARMSDDPEENLKATTIQGQCQGKSGGAFTYRTPPGEFTVAR 300
Query: 301 MIRKGGKYYLLYFFAEGVEITKDIEEKLKWGKQWPHTAIRNPLDRQDFINVMGANHLSLV 360
MIRKGGKYYLLYFFAEGVEITKDIEEKLKWGKQWPHTAIRNPLDRQDFINVMGANHLSLV
Sbjct: 301 MIRKGGKYYLLYFFAEGVEITKDIEEKLKWGKQWPHTAIRNPLDRQDFINVMGANHLSLV 360
Query: 361 PGDYTQELKFVAKVWGIKAVDLNDLLEVKEFLAE 394
PGDYTQELKFVAKVWGIKAVDLNDLLEVKEFLAE
Sbjct: 361 PGDYTQELKFVAKVWGIKAVDLNDLLEVKEFLAE 394
>pir||A71021 hypothetical protein PH1462 - Pyrococcus horikoshii
>gi|3257886|dbj|BAA30569.1| (AP000006) 483aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 483
Score = 681 bits (1738), Expect = 0.0
Identities = 313/392 (79%), Positives = 358/392 (90%)
Query: 1 MVTYFLKEANVPILLYADGDPNWAGATCVTSVGASLWETSINEHAIRHVRVIGDLELVKS 60
+VTYF++EA VPILLY DGDPNWAGATCVTSVGASLWETS+NE+A RH RVI D+ELVKS
Sbjct: 90 LVTYFIREAEVPILLYTDGDPNWAGATCVTSVGASLWETSVNEYAKRHCRVIDDIELVKS 149
Query: 61 WVRAVEAVDKLSKGSILLLGGTYTLGMEHLMDDIPKLKKFVGDFIMLDQYAIIKEGEEVE 120
W+RA EAV LS+GS+LL GGTYTLGMEHLMDD+P LK FVGDFIMLDQY IIKEGE V
Sbjct: 150 WIRASEAVKVLSEGSLLLFGGTYTLGMEHLMDDLPGLKSFVGDFIMLDQYTIIKEGESVN 209
Query: 121 DGDVERFYEWLLSKAKVKFDGKMLTPEVLKRQIRLYLGAKRIWDKRREEIIGLSVKCQPE 180
+ V FYEWL+ VKFDGKMLTPEVL++QIRLYLGAK+I + R+E IIG+S+KCQPE
Sbjct: 210 EEQVNEFYEWLIKNTNVKFDGKMLTPEVLRKQIRLYLGAKKILESRKENIIGVSIKCQPE 269
Query: 181 LSEIYGVTACTIPAFFPFNRDAFGDKPIVPATCEGDIKGTITSALLYYISNKPPLFGDIK 240
LSE+YGVTACTIPA FPF++DAFG KP++P TCEGDIKGTITSALLYY+S KPPLFGDIK
Sbjct: 270 LSEVYGVTACTIPALFPFDQDAFGKKPVIPTTCEGDIKGTITSALLYYLSGKPPLFGDIK 329
Query: 241 YVDDDIVIIANCGASSLYYARMSDDPEENLKATTIQGQCQGKSGGAFTYRTPPGEFTVAR 300
Y+DDDIVIIANCGASSLYYA++S+DP ENL++ TIQGQCQGKSGGAFTYRTPPGEFTVAR
Sbjct: 330 YIDDDIVIIANCGASSLYYAKLSEDPYENLRSVTIQGQCQGKSGGAFTYRTPPGEFTVAR 389
Query: 301 MIRKGGKYYLLYFFAEGVEITKDIEEKLKWGKQWPHTAIRNPLDRQDFINVMGANHLSLV 360
+IR+ GKYYLLYFFAEGVEI+++IE KLKWGKQWPHTAIRNPLD+Q+FINVMGANHLSL+
Sbjct: 390 LIRRDGKYYLLYFFAEGVEISEEIENKLKWGKQWPHTAIRNPLDKQEFINVMGANHLSLI 449
Query: 361 PGDYTQELKFVAKVWGIKAVDLNDLLEVKEFL 392
PGDYTQEL+FVAK+WGI+ V+LNDLL+VK+FL
Sbjct: 450 PGDYTQELEFVAKIWGIEGVNLNDLLDVKKFL 481
>pir||H72393 hypothetical protein TM0307 - Thermotoga maritima (strain MSB8)
>gi|4980807|gb|AAD35395.1|AE001712_8 (AE001712) L-fucose
isomerase, putative [Thermotoga maritima]
Length = 473
Score = 136 bits (339), Expect = 4e-31
Identities = 111/389 (28%), Positives = 187/389 (47%), Gaps = 25/389 (6%)
Query: 7 KEANVPILLYADGDPNWAGATCVTSVGASLWETSINEHAIRHVRVIGD------LELVKS 60
K A P LL+++ +P + G + S +L + +H R+ G+ L V +
Sbjct: 92 KFAPGPFLLFSNINPQYPGMVAMLSAAGAL-----EQDGTKHYRMWGNIKDEKVLRKVMA 146
Query: 61 WVRAVEAVDKLSKGSILLLGGTYTLGMEHLMDDIPKLKKFVG-DFIMLDQYAIIKEGEEV 119
++RA KL + GG ++GM + ++ K G D +DQ+ I++ + +
Sbjct: 147 FIRAGSTYKKLRGQRYGVFGGR-SMGMYTAVPNVDLWNKIFGVDVEHIDQFEIVRRSQLI 205
Query: 120 EDGDVERFYEWLLSKAK-VKFDGKMLTPEVLKRQIRLYLGAKRIWDKRREEIIGLSVKCQ 178
D + W+ KAK V +DGK LTPE L+ QI+ Y + I ++ + +G +K Q
Sbjct: 206 PDERARKGRLWIEEKAKAVHYDGKYLTPEKLELQIKSYHAVREIVEEMELDFVG--IKGQ 263
Query: 179 PELSEIYGVTACTIPAFFPFNRDAFGD-KPIVPATCEGDIKGTITSALLYYISNKPPLFG 237
EL+E + VT F D G+ +PIV AT E D G +T + I+ P LF
Sbjct: 264 LELTEHF-VTMDVTETFLNDPYDWEGEHEPIVCAT-EADSDGALTMQIFKLIAKTPVLFA 321
Query: 238 DIK-YVDD-DIVIIANCGASSLYYARMSDDPEENLKATTIQGQCQ--GKSGGAFTYRTPP 293
D++ YV++ D++ + N G + Y+A S DP+EN+K Q G A + P
Sbjct: 322 DVRHYVEEYDVLDLCNSGNHATYFAARSFDPDENMKKVEFYPQTFYFPAGGAAVKHIAAP 381
Query: 294 GEFTVARMIRKGGKYYLLYFFAEGVEITKDIEEKLKWGKQ--WPHTAIRNPLDRQDFINV 351
G+ T+ R+ R+ G+Y E V+ ++ ++ Q WPH ++ +F+
Sbjct: 382 GKVTLGRLTREDGRYRFTVVPGEFVDFGEEKNYEIADSIQNNWPHAFLKMETPIDEFLAK 441
Query: 352 MGANHLSLVPGDYTQELKFVAKVWGIKAV 380
+NH+ V GDY +E+K ++ I V
Sbjct: 442 YSSNHIHGVYGDYVEEIKTFCEIASIDFV 470
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.140 0.425
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157517708
Number of Sequences: 2977
Number of extensions: 6760202
Number of successful extensions: 13893
Number of sequences better than 1.0e-10: 3
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 13886
Number of HSP's gapped (non-prelim): 3
length of query: 394
length of database: 189,106,746
effective HSP length: 53
effective length of query: 341
effective length of database: 157,386,935
effective search space: 53668944835
effective search space used: 53668944835
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 166 (69.1 bits)