BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1902 (gatB) DE:GLU-TRNA AMIDOTRANSFERASE, SUBUNIT B (GATB)
(633 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75112 glu-tRNA amidotransferase, chain B (gatb) PAB1902 - ... 1238 0.0
sp|O59133|YE64_PYRHO HYPOTHETICAL PROTEIN PH1464 >gi|7519156|pir... 1158 0.0
sp|Q60325|Y019_METJA HYPOTHETICAL PROTEIN MJ0019 >gi|2128085|pir... 665 0.0
sp|O26803|Y707_METTH HYPOTHETICAL PROTEIN MTH707 >gi|7482771|pir... 596 e-169
sp|Q9Y9T6|YZ02_AERPE HYPOTHETICAL PROTEIN APE2202 >gi|7521089|pi... 594 e-169
gb|AAK41212.1| Glutamyl-tRNA -Gln amidotransferase, subunit B (g... 551 e-156
gi|11499035 Glu-tRNA amidotransferase, subunit B (gatB-1) [Archa... 547 e-154
gb|AAG19685.1| (AE005056) Glu-tRNA amidotransferase; GatB1 [Halo... 525 e-148
emb|CAC12100.1| (AL445066) Glu-tRNA amidotransferase, subunit B ... 329 5e-89
sp|Q9X100|GATB_THEMA GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT... 120 5e-26
sp|Q57624|GATB_METJA PROBABLE GLUTAMYL-TRNA(GLN) AMIDOTRANSFERAS... 104 2e-21
sp|Q9Z9X0|GATB_BACHD GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT... 104 2e-21
sp|O27341|GATB_METTH PROBABLE GLUTAMYL-TRNA(GLN) AMIDOTRANSFERAS... 104 4e-21
sp|O66766|GATB_AQUAE GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT... 104 4e-21
sp|Q9ZE11|GATB_RICPR GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT... 99 1e-19
sp|Q9Z9G6|GATB_CHLPN GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT... 96 1e-18
dbj|BAA98214.1| (AP002545) (Pet112) Glu tRNA Gln amidotransferas... 95 3e-18
gb|AAK40575.1| Glutamyl-tRNA -Gln amidotransferase, subunit B (g... 93 1e-17
pir||C69795 glutamyl-tRNA(Gln) amidotransferase (EC 2.6.-.-) cha... 92 2e-17
gb|AAF18137.1|AF205033_3 (AF205033) glutamyl-tRNAGln amidotransf... 92 2e-17
pir||T51583 glutamyl-tRNA (Gln) amidotransferase (EC 2.6.-.-) ch... 90 9e-17
gb|AAB87634.1| (U49788) Bacillus subtilis PET112-like protein 90 9e-17
sp|O30509|GATB_BACSU GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT... 90 9e-17
pir||B81722 glutamyl-tRNA(Gln) amidotransferase chain B TC0272 [... 89 2e-16
sp|P74215|GATB_SYNY3 GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT... 88 3e-16
sp|Q45486|GATB_STASP GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT... 86 1e-15
sp|O84007|GATB_CHLTR GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT... 85 2e-15
pir||A83085 Glu-tRNA(Gln) amidotransferase subunit B PA4484 [imp... 79 1e-13
pir||B64602 PET112-like protein - Helicobacter pylori (strain 26... 78 2e-13
sp|Q9ZLH6|GATB_HELPJ GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT... 78 2e-13
sp|O25372|GATB_HELPY GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT... 78 2e-13
pir||G81325 Glu-tRNAGln amidotransferase chain B Cj1197c [import... 78 3e-13
gi|11499699 Glu-tRNA amidotransferase, subunit B (gatB-2) [Archa... 78 4e-13
gb|AAG18915.1| (AE004994) Glu-tRNA amidotransferase; GatB2 [Halo... 73 7e-12
pir||E81849 Glu-tRNAGln amidotransferase subunit A NMA1570 [impo... 71 5e-11
pir||G81091 Glu-tRNA(Gln) amidotransferase, chain B NMB1358 [imp... 70 8e-11
>pir||D75112 glu-tRNA amidotransferase, chain B (gatb) PAB1902 - Pyrococcus
abyssi (strain Orsay) >gi|5458124|emb|CAB49613.1|
(AJ248285) GLU-TRNA AMIDOTRANSFERASE, SUBUNIT B (GATB)
[Pyrococcus abyssi]
Length = 633
Score = 1238 bits (3168), Expect = 0.0
Identities = 633/633 (100%), Positives = 633/633 (100%)
Query: 1 MMVMTDKFNYEELGLKVGLEIHRQLDTKKLFSPVPSELSDKVEFTFQRRLRPTMSELGEI 60
MMVMTDKFNYEELGLKVGLEIHRQLDTKKLFSPVPSELSDKVEFTFQRRLRPTMSELGEI
Sbjct: 1 MMVMTDKFNYEELGLKVGLEIHRQLDTKKLFSPVPSELSDKVEFTFQRRLRPTMSELGEI 60
Query: 61 DPAALEEFKKGRVYVYEGNYELTDLVYMDEEPPRGPDREALEVALQIAYLLNAKPVDEVY 120
DPAALEEFKKGRVYVYEGNYELTDLVYMDEEPPRGPDREALEVALQIAYLLNAKPVDEVY
Sbjct: 61 DPAALEEFKKGRVYVYEGNYELTDLVYMDEEPPRGPDREALEVALQIAYLLNAKPVDEVY 120
Query: 121 YMRKIVIDGSNVSGFQRTAIIATDGKVETPWGAVGIPTICLEEDAARIIERKDKEVIYRL 180
YMRKIVIDGSNVSGFQRTAIIATDGKVETPWGAVGIPTICLEEDAARIIERKDKEVIYRL
Sbjct: 121 YMRKIVIDGSNVSGFQRTAIIATDGKVETPWGAVGIPTICLEEDAARIIERKDKEVIYRL 180
Query: 181 DRLGIPLIEISTTPDIHHPEQAKVVAKFIGDALRATKKVKRGLGTIRQDLNVSIKGGARI 240
DRLGIPLIEISTTPDIHHPEQAKVVAKFIGDALRATKKVKRGLGTIRQDLNVSIKGGARI
Sbjct: 181 DRLGIPLIEISTTPDIHHPEQAKVVAKFIGDALRATKKVKRGLGTIRQDLNVSIKGGARI 240
Query: 241 EIKGVQELDMIPIIIEREVERQLNLLKIRDELRKRGVKPKDIKEEFYDVTDIFENTKSKI 300
EIKGVQELDMIPIIIEREVERQLNLLKIRDELRKRGVKPKDIKEEFYDVTDIFENTKSKI
Sbjct: 241 EIKGVQELDMIPIIIEREVERQLNLLKIRDELRKRGVKPKDIKEEFYDVTDIFENTKSKI 300
Query: 301 IARVIKKGGKVLAIKLPKFRGLIGREIQPGRRLGTEFADRAKKYVPGIFHIDELPNYGIS 360
IARVIKKGGKVLAIKLPKFRGLIGREIQPGRRLGTEFADRAKKYVPGIFHIDELPNYGIS
Sbjct: 301 IARVIKKGGKVLAIKLPKFRGLIGREIQPGRRLGTEFADRAKKYVPGIFHIDELPNYGIS 360
Query: 361 QEEVNKVIERLNLSEEDAFVLVAAEEEKAKNALREVIKRAREAIEGVPEETRRALPDGNT 420
QEEVNKVIERLNLSEEDAFVLVAAEEEKAKNALREVIKRAREAIEGVPEETRRALPDGNT
Sbjct: 361 QEEVNKVIERLNLSEEDAFVLVAAEEEKAKNALREVIKRAREAIEGVPEETRRALPDGNT 420
Query: 421 EYMRPLPGKARMYPETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLDRSLAQTL 480
EYMRPLPGKARMYPETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLDRSLAQTL
Sbjct: 421 EYMRPLPGKARMYPETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLDRSLAQTL 480
Query: 481 VDDERDELFEELVSMGVKPSLAASILVVVLKGLRKEVPIENVTDEHIREAFQLYLEGKIA 540
VDDERDELFEELVSMGVKPSLAASILVVVLKGLRKEVPIENVTDEHIREAFQLYLEGKIA
Sbjct: 481 VDDERDELFEELVSMGVKPSLAASILVVVLKGLRKEVPIENVTDEHIREAFQLYLEGKIA 540
Query: 541 KEAFEEIFKELARNPSKSAREVAEEKGLTLLSEEEVTRIIEEVIQQNIEVVKAKGMGAMG 600
KEAFEEIFKELARNPSKSAREVAEEKGLTLLSEEEVTRIIEEVIQQNIEVVKAKGMGAMG
Sbjct: 541 KEAFEEIFKELARNPSKSAREVAEEKGLTLLSEEEVTRIIEEVIQQNIEVVKAKGMGAMG 600
Query: 601 LIMGRVMAKVRGKADGKLVSQIVRRKLQEISGG 633
LIMGRVMAKVRGKADGKLVSQIVRRKLQEISGG
Sbjct: 601 LIMGRVMAKVRGKADGKLVSQIVRRKLQEISGG 633
>sp|O59133|YE64_PYRHO HYPOTHETICAL PROTEIN PH1464 >gi|7519156|pir||C71021 hypothetical
protein PH1464 - Pyrococcus horikoshii
>gi|3257888|dbj|BAA30571.1| (AP000006) 635aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 635
Score = 1158 bits (2963), Expect = 0.0
Identities = 573/633 (90%), Positives = 619/633 (97%)
Query: 1 MMVMTDKFNYEELGLKVGLEIHRQLDTKKLFSPVPSELSDKVEFTFQRRLRPTMSELGEI 60
MM M+DKFNYEELGLKVGLEIHRQLDTKKLFSPVP++ SD+V+FTFQRRLRPTMSELGE+
Sbjct: 1 MMQMSDKFNYEELGLKVGLEIHRQLDTKKLFSPVPTKFSDEVDFTFQRRLRPTMSELGEV 60
Query: 61 DPAALEEFKKGRVYVYEGNYELTDLVYMDEEPPRGPDREALEVALQIAYLLNAKPVDEVY 120
DPAALEEFKKGRV++YEGNY+LTDLVYMDEEPPRGPD+EALEVALQIAYLLNAKPVDEVY
Sbjct: 61 DPAALEEFKKGRVFIYEGNYQLTDLVYMDEEPPRGPDKEALEVALQIAYLLNAKPVDEVY 120
Query: 121 YMRKIVIDGSNVSGFQRTAIIATDGKVETPWGAVGIPTICLEEDAARIIERKDKEVIYRL 180
YMRKIVIDGSNVSGFQRTAIIATDGKVETPWG VGIPTICLEEDAARIIERK+KEVIYRL
Sbjct: 121 YMRKIVIDGSNVSGFQRTAIIATDGKVETPWGTVGIPTICLEEDAARIIERKEKEVIYRL 180
Query: 181 DRLGIPLIEISTTPDIHHPEQAKVVAKFIGDALRATKKVKRGLGTIRQDLNVSIKGGARI 240
DRLG+PL+EISTTPDIHHPEQAKVVAKFIGDALRAT+KVKRGLGTIRQDLNVSIKGGARI
Sbjct: 181 DRLGVPLVEISTTPDIHHPEQAKVVAKFIGDALRATRKVKRGLGTIRQDLNVSIKGGARI 240
Query: 241 EIKGVQELDMIPIIIEREVERQLNLLKIRDELRKRGVKPKDIKEEFYDVTDIFENTKSKI 300
EIKGVQELDMIP+IIEREVERQLNLLKIRDEL++RGV+P+DIKEEFYDVTD+F NTKSKI
Sbjct: 241 EIKGVQELDMIPLIIEREVERQLNLLKIRDELQRRGVRPEDIKEEFYDVTDVFTNTKSKI 300
Query: 301 IARVIKKGGKVLAIKLPKFRGLIGREIQPGRRLGTEFADRAKKYVPGIFHIDELPNYGIS 360
IAR IKKGGKVLAIKLPKFRGLIGREIQPGRRLGTEFADRA+KYVPGIFHIDELPNYGI+
Sbjct: 301 IARAIKKGGKVLAIKLPKFRGLIGREIQPGRRLGTEFADRARKYVPGIFHIDELPNYGIT 360
Query: 361 QEEVNKVIERLNLSEEDAFVLVAAEEEKAKNALREVIKRAREAIEGVPEETRRALPDGNT 420
QEEVN+VI+RL L EEDAFVLVAAEEE+AKNALREVIKRA+EAI GVPEETRRALPDGNT
Sbjct: 361 QEEVNEVIKRLGLGEEDAFVLVAAEEERAKNALREVIKRAKEAIIGVPEETRRALPDGNT 420
Query: 421 EYMRPLPGKARMYPETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLDRSLAQTL 480
EYMRPLPGKARMYPETDIPP+RIPD+LK+KIKENLPELPQ KVE+YV+EYKLDRSLAQTL
Sbjct: 421 EYMRPLPGKARMYPETDIPPIRIPDELKRKIKENLPELPQVKVEKYVREYKLDRSLAQTL 480
Query: 481 VDDERDELFEELVSMGVKPSLAASILVVVLKGLRKEVPIENVTDEHIREAFQLYLEGKIA 540
VDDERDELFEELV MGVKPSLAASILVVVLKGLRKEVPIEN++DEHI+EAF LYLEGKIA
Sbjct: 481 VDDERDELFEELVQMGVKPSLAASILVVVLKGLRKEVPIENISDEHIKEAFSLYLEGKIA 540
Query: 541 KEAFEEIFKELARNPSKSAREVAEEKGLTLLSEEEVTRIIEEVIQQNIEVVKAKGMGAMG 600
KEAFEEIFKE+ARNP+K+AR++AEEKGLTLLSE+EV +II+EVI+QNIEVVK KGMGAMG
Sbjct: 541 KEAFEEIFKEIARNPNKTARQIAEEKGLTLLSEDEVRKIIDEVIEQNIEVVKNKGMGAMG 600
Query: 601 LIMGRVMAKVRGKADGKLVSQIVRRKLQEISGG 633
LIMGRVMAKVRGKADGKLVSQIV+++LQEI GG
Sbjct: 601 LIMGRVMAKVRGKADGKLVSQIVKKRLQEIVGG 633
>sp|Q60325|Y019_METJA HYPOTHETICAL PROTEIN MJ0019 >gi|2128085|pir||C64302 hypothetical
protein MJ0019 - Methanococcus jannaschii
>gi|1498777|gb|AAB97995.1| (U67460) Glu-tRNA
amidotransferase (gatB) [Methanococcus jannaschii]
Length = 630
Score = 665 bits (1697), Expect = 0.0
Identities = 358/632 (56%), Positives = 457/632 (71%), Gaps = 11/632 (1%)
Query: 7 KFNYEELGLKVGLEIHRQLDTK-KLFSPVPSEL-SDKVEFTFQRRLRPTMSELGEIDPAA 64
+ NYE++GLKVGLEIH+QL+TK KLF P+ L D+ + R LRP++SE+GE+D AA
Sbjct: 2 EINYEKVGLKVGLEIHQQLNTKRKLFCHCPTILRDDEPDGEIVRVLRPSLSEMGEVDRAA 61
Query: 65 LEEFKKGRVYVYEGNYELTDLVYMDEEPPRGPDREALEVALQIAYLLNAKPVDEVYYMRK 124
L E +KG+ ++Y+ + T LV +DEEPP P EAL +AL++A L+N VD Y MRK
Sbjct: 62 LIEARKGKKFIYQFYNDTTCLVELDEEPPHPPSEEALRIALEVALLMNMNVVDVAYTMRK 121
Query: 125 IVIDGSNVSGFQRTAIIATDGKVETPWGAVGIPTICLEEDAARIIERKDKEVIYRLDRLG 184
IVIDGSN SGFQRT +A DG +ET G VGI ++CLEEDAAR IE + V+Y LDRLG
Sbjct: 122 IVIDGSNTSGFQRTIFLARDGYIETSEGKVGITSLCLEEDAARKIEDRGDAVVYNLDRLG 181
Query: 185 IPLIEISTTPDIHHPEQAKVVAKFIGDALRATKKVKRGLGTIRQDLNVSIKGGARIEIKG 244
IPL+EIST PDI P+ AK A+ IG+ LRAT KVKRGLGTIRQD+N+SIK GARIE+KG
Sbjct: 182 IPLVEISTAPDIKTPKMAKEAARRIGEILRATGKVKRGLGTIRQDINISIKDGARIEVKG 241
Query: 245 VQELDMIPIIIEREVERQLNLLKIRDELRKRGVKPKDIKEEFYDVTDIFENTKSKIIARV 304
VQ+LD+I ++E EV RQLNLLKIRDELR+R ++ E+ +DVT+IF++ KSKII
Sbjct: 242 VQDLDLIEKVVENEVIRQLNLLKIRDELRERNA---EVVEKIFDVTEIFKDCKSKIIQNA 298
Query: 305 I-KKGGKVLAIKLPKFRGLIGREIQPGRRLGTEFADRAKKY--VPGIFHIDELPNYGISQ 361
+ KK GKV A+ L F GL+G+EIQPGRRLGTEF+DRAK V G+FH DELP YGI++
Sbjct: 299 LKKKNGKVKAVLLKGFAGLVGKEIQPGRRLGTEFSDRAKVIAGVGGLFHTDELPKYGITE 358
Query: 362 EEVNKVIERLNLSEEDAFVLVAAEEEKAKNALREVIKRAREAIEGVPEETRRALPDGNTE 421
EEV K+ E +N E DA ++VA EE K AL VI+RA+EA+ GVPEETRRAL DGNT
Sbjct: 359 EEVKKLKEFVNAEENDAVIIVADEESKVDRALEAVIERAKEALIGVPEETRRALEDGNTA 418
Query: 422 YMRPLPGKARMYPETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLDRSLAQTLV 481
Y+RPLPG ARMYPETDIPP+ I + ++I+ NLPELP+ K ER+ KEYKL+ LA+ +V
Sbjct: 419 YLRPLPGAARMYPETDIPPIIIKKEFIEEIRANLPELPEEKFERFKKEYKLNDELAKKMV 478
Query: 482 DDERDELFEELVS--MGVKPSLAASILVVVLKGLRKE-VPIENVTDEHIREAFQLYLEGK 538
+LFE+L VKP L A+ L LK +++E I+ + D H+ E F+ EGK
Sbjct: 479 LSYYVDLFEDLCKKFKNVKPVLIATTLEGTLKEIKREGYDIDKLEDRHLEETFKALSEGK 538
Query: 539 IAKEAFEEIFKELARNPSKSAREVAEEKGLTLLSEEEVTRIIEEVIQQNIEVVKAKGMGA 598
IAKE E+ K P KS E+ E KGL LS+EEV +IIE +I++++ VVK KG A
Sbjct: 539 IAKEGIVEVLKGFCEFPDKSIDEILEIKGLKGLSKEEVEKIIEGIIKEHLNVVKEKGEKA 598
Query: 599 MGLIMGRVMAKVRGKADGKLVSQIVRRKLQEI 630
G +MGR MAK+RGKADGKLV+ I+R+KL+EI
Sbjct: 599 YGFLMGRCMAKLRGKADGKLVNDILRKKLKEI 630
>sp|O26803|Y707_METTH HYPOTHETICAL PROTEIN MTH707 >gi|7482771|pir||D69194 PET112-like
protein - Methanobacterium thermoautotrophicum (strain
Delta H) >gi|2621793|gb|AAB85212.1| (AE000849)
PET112-like protein [Methanobacterium
thermoautotrophicum]
Length = 619
Score = 596 bits (1521), Expect = e-169
Identities = 324/625 (51%), Positives = 444/625 (70%), Gaps = 13/625 (2%)
Query: 9 NYEELGLKVGLEIHRQLDTK-KLFSPVPSELSD-KVEFTFQRRLRPTMSELGEIDPAALE 66
++E++GLK+GLEIH+QLDT+ KLF P +EL+D + + R LRPT SELG+ D AA E
Sbjct: 2 DWEKVGLKMGLEIHQQLDTESKLFCPCRTELTDSEPDHDIVRNLRPTQSELGKFDRAAFE 61
Query: 67 EFKKGRVYVYEGNYELTDLVYMDEEPPRGPDREALEVALQIAYLLNAKPVDEVYYMRKIV 126
E + + YE +E T LV DEEPP + EALE+A+ IA LLN + VDE + MRK V
Sbjct: 62 EAMRKLHFHYENYHEETCLVEADEEPPHPLNPEALEIAVTIALLLNMRVVDEFHTMRKQV 121
Query: 127 IDGSNVSGFQRTAIIATDGKVETPWGAVGIPTICLEEDAARIIERKDKEVIYRLDRLGIP 186
IDGSN GFQRT ++ATDG +ETP G V I +CLEEDAAR I V++RLDRLGIP
Sbjct: 122 IDGSNTGGFQRTGLVATDGHLETPQGTVKIENLCLEEDAARRIRETGDGVVFRLDRLGIP 181
Query: 187 LIEISTTPDIHHPEQAKVVAKFIGDALRATKKVKRGLGTIRQDLNVSIKGGARIEIKGVQ 246
L+EI+T P + P+Q + VA IG LR+T+ VKRGLGTIRQDLN+SI+ GAR+E+KGVQ
Sbjct: 182 LVEITTDPSMSDPQQLREVAYQIGQILRSTR-VKRGLGTIRQDLNISIRDGARVEVKGVQ 240
Query: 247 ELDMIPIIIEREVERQLNLLKIRDELRKRGVKPKDIKEEFYDVTDIFENTKSKIIARVIK 306
+LD+IP I+EREV+RQL+L++IRD L++RG ++++ +DV+++F +T+S R+I
Sbjct: 241 DLDLIPEIVEREVKRQLSLVEIRDTLQERGAV---VEDKIFDVSEVFADTES----RIIS 293
Query: 307 KGGKVLAIKLPKFRGLIGREIQPGRRLGTEFADRAKKY-VPGIFHIDELPNYGISQEEVN 365
VLA+KL F GLIG EIQPGRRLGTE AD AKK V GIFH DELP YGI++EEV
Sbjct: 294 SAESVLAVKLRGFDGLIGVEIQPGRRLGTEMADYAKKRGVSGIFHTDELPAYGITEEEVR 353
Query: 366 KVIERLNLSEEDAFVLVAAEEEKAKNALREVIKRAREAIEGVPEETRRALPDGNTEYMRP 425
+ + + S+ DA V+VA E A+NALREVI+RA AI+GVPEETR+ALPDGNT+Y+RP
Sbjct: 354 GLRDAVGASQGDAVVMVAHERVTAENALREVIRRAEMAIQGVPEETRKALPDGNTQYLRP 413
Query: 426 LPGKARMYPETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLDRSLAQTLVDDER 485
LP +RMY ETDIP RI DDL + I+ NLPELP K ER +++Y L LA LV
Sbjct: 414 LPTSSRMYLETDIPLFRIEDDLLEGIRRNLPELPSEKKERIMRDYGLSEDLASQLVKRNL 473
Query: 486 DELFEELVSMGVKPSLAASILVVVLKGLRKE-VPIENVTDEHIREAFQLYLEGKIAKEAF 544
+ FE L V ++ AS+L L+ LR+E ++ + + +R+A +L GKI+K+A
Sbjct: 474 VDEFEALTEFRVDTTVIASLLAYTLRELRREGHDVDGLGLDELRDAIKLLEVGKISKDAL 533
Query: 545 EEIFKELARNPSKSAREVAEEKGLTLLSEEEVTRIIEEVIQQNIEVVKAKGMGAMGLIMG 604
+I +A + +A + A + L LL+E+E+ II+E+++ N++++ +GMGAMG +MG
Sbjct: 534 RDIVACMA-DEGLAAEDAARKLNLLLLAEDEIESIIQEIVEGNLDMISERGMGAMGPLMG 592
Query: 605 RVMAKVRGKADGKLVSQIVRRKLQE 629
+ M ++RG+ADGK+V++I+R K+QE
Sbjct: 593 QAMGRLRGRADGKVVNRILREKIQE 617
>sp|Q9Y9T6|YZ02_AERPE HYPOTHETICAL PROTEIN APE2202 >gi|7521089|pir||F72528 probable
Glu-tRNA amidotransferase, subunit B APE2202 - Aeropyrum
pernix (strain K1) >gi|5105902|dbj|BAA81214.1|
(AP000063) 642aa long hypothetical Glu-tRNA
amidotransferase, subunit B [Aeropyrum pernix]
Length = 642
Score = 594 bits (1516), Expect = e-169
Identities = 326/633 (51%), Positives = 429/633 (67%), Gaps = 9/633 (1%)
Query: 7 KFNYEELGLKVGLEIHRQLDTK-KLFSPVPSELSDKVEFTFQRRLRPTMSELGEIDPAAL 65
+ +Y +GLKVGLEIH+QLDT+ KLF P+EL ++ F R+LRPT SELG++DPAAL
Sbjct: 3 RIDYRSIGLKVGLEIHQQLDTREKLFCSCPAELGEEEHDEFVRQLRPTRSELGDVDPAAL 62
Query: 66 EEFKKGRVYVYEGNYELTDLVYMDEEPPRGPDREALEVALQIAYLLNAKPVDEVYYMRKI 125
E++KGR+Y+Y+ + LV DEEPP +REA+ VA+ +A L + VDEV+ MRK
Sbjct: 63 FEWRKGRLYIYQAPLNHSCLVEADEEPPHPINREAVAVAVAVAKALGSAIVDEVHVMRKT 122
Query: 126 VIDGSNVSGFQRTAIIATDGKVETPWGAVGIPTICLEEDAARIIERKDKEVIYRLDRLGI 185
VIDGSN SGFQRTAI+A G + V I TI +EEDAAR + K + V+YRLDRLGI
Sbjct: 123 VIDGSNTSGFQRTAIVALGGSIRVGSKEVPIETIVIEEDAARKVGEKGRYVVYRLDRLGI 182
Query: 186 PLIEISTTPDIHHPEQAKVVAKFIGDALRATKKVKRGLGTIRQDLNVSIKGGARIEIKGV 245
PLIEI+T P I P +A+ VA IG LR T KVKRGLGTIRQDLNVSI+GGA+ EIKGV
Sbjct: 183 PLIEIATAPVIESPGEAREVALAIGTMLRLTGKVKRGLGTIRQDLNVSIRGGAKTEIKGV 242
Query: 246 QELDMIPIIIEREVERQLNLLKIRDELRKRGVKPKDIKE-EFYDVTDIFENTKSKIIARV 304
Q L++IP +IE EV RQL+LL+IRD LR+RGV ++++ E DV+ + +KS++I +V
Sbjct: 243 QRLELIPRVIEYEVLRQLSLLRIRDMLRERGVSREELENVEPVDVSSLLAGSKSRVIKKV 302
Query: 305 IKKGGKVLAIKLPKFRGLIGREIQPGRRLGTEFADRAKKY--VPGIFHIDELPNYGISQE 362
+ GGKV+A+KLP+ +G+IG EI PGRR GTE AD A+ + V GI H DELP YGI+ +
Sbjct: 303 LSSGGKVIAVKLPRMKGIIGMEIMPGRRFGTELADYARFWGGVGGIIHSDELPGYGITGD 362
Query: 363 EVNKVIERLNLSE-EDAFVLVAAEEEKAKNALREVIKRAREAIEGVPEETRRALPDGNTE 421
EV K+ E + DAF LVA + A A R V++R A+EGVPEETR AL DG T
Sbjct: 363 EVEKIYEAVGGDPGVDAFALVADKPSNALRAARAVLERVAAALEGVPEETRAALEDGTTR 422
Query: 422 YMRPLPGKARMYPETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLDRSLAQTLV 481
Y+RP PG ARMYPETDIPPLRI +++ + +PE P+ R KEY L LA ++
Sbjct: 423 YLRPRPGSARMYPETDIPPLRIDENILSMAEPLVPEPPEVVAMRLKKEYGLSDQLAWEVI 482
Query: 482 DDERDELFEELVSM---GVKPSLAASILVVVLKGLRKE-VPIENVTDEHIREAFQLYLEG 537
DER L L+ ++PS A VVVL+GL E V + V D + + + +G
Sbjct: 483 RDERYRLIVSLLEKYRGTLEPSYVAGFFVVVLRGLEGEGVEVWKVDDAILEKILDMVAQG 542
Query: 538 KIAKEAFEEIFKELARNPSKSAREVAEEKGLTLLSEEEVTRIIEEVIQQNIEVVKAKGMG 597
+IA+EA E+ K LA NP + E E+ GL LS EEV RI++E++ E + +G
Sbjct: 543 EIAREAAAELVKYLANNPGSTVEEAVEKLGLRRLSREEVERIVDEIVGGLREEILKRGEK 602
Query: 598 AMGLIMGRVMAKVRGKADGKLVSQIVRRKLQEI 630
A+GL+MGR MAK+RG+ADG+LVS+IV RK++EI
Sbjct: 603 AVGLVMGRAMAKLRGRADGRLVSEIVSRKIREI 635
>gb|AAK41212.1| Glutamyl-tRNA -Gln amidotransferase, subunit B (gatB-2) [Sulfolobus
solfataricus]
Length = 633
Score = 551 bits (1405), Expect = e-156
Identities = 308/634 (48%), Positives = 426/634 (66%), Gaps = 15/634 (2%)
Query: 7 KFNYEELGLKVGLEIHRQLDTK-KLFSPVPSELSDKVEFTFQRRLRPTMSELGEIDPAAL 65
+ NYEELGLKVGLEIH+QL+T KLF + L ++ + T +R LRP +SELGE+D AAL
Sbjct: 3 ELNYEELGLKVGLEIHQQLNTPHKLFCNCSTNLEEEYKLTLERYLRPALSELGEVDVAAL 62
Query: 66 EEFKKGRVYVYEGNYELTDLVYMDEEPPRGPDREALEVALQIAYLLNAKPVDEVYYMRKI 125
E+KKG+ YVY + LV DEEPP + EAL++AL IA LN+ VDE+Y MRKI
Sbjct: 63 FEWKKGKKYVYRIPITTSCLVEADEEPPHAINEEALKIALAIAMALNSNIVDEIYVMRKI 122
Query: 126 VIDGSNVSGFQRTAIIATDGKVETPWGAVGIPTICLEEDAARIIERKDKEVIYRLDRLGI 185
VIDGSN +GFQRTAIIA G ++ V I +I +EEDAAR I+ +V Y LDRLGI
Sbjct: 123 VIDGSNTTGFQRTAIIALGGMLKDE--EVSIQSIAVEEDAARKIDEGTDQVTYSLDRLGI 180
Query: 186 PLIEISTTPDIHHPEQAKVVAKFIGDALRATKKVKRGLGTIRQDLNVSIKGGARIEIKGV 245
PLIEIST PDI PEQA+ VA IG LR T KVKRG+GTIRQDLN+SIKGG +IEIKGV
Sbjct: 181 PLIEISTGPDIRSPEQAERVALKIGQLLRMTGKVKRGIGTIRQDLNISIKGGTKIEIKGV 240
Query: 246 QELDMIPIIIEREVERQLNLLKIRDELRKRGVKPKDIKEEFY--DVTDIFENTKSKIIAR 303
Q+L++IP I+ E RQ NLLKI++EL +RG+ + + F DVT++F+NT SKII
Sbjct: 241 QKLELIPDIVRYEAIRQFNLLKIKEELYRRGLTKELVLSNFVVKDVTELFKNTNSKIIKN 300
Query: 304 VIKKGGKVLAIKLPKFRGLIGREIQP-GRRLGTEFAD--RAKKYVPGIFHIDELPNYGIS 360
I+KGG V I+ K +G++G E+ P RR GTE AD RA + G+FH DELPNYGI+
Sbjct: 301 GIEKGGLVYGIRAYKLKGVLGWELIPKKRRFGTEIADYVRALAGLGGLFHSDELPNYGIT 360
Query: 361 QEEVNKVIERLNLSEEDAFVLVAAEEEKAKNALREVIKRAREAIEGVPEETRRALPDGNT 420
+EE+NKV E LN + EDA +L+ E E+ A+ + R A +G+P+ETR AL DG T
Sbjct: 361 EEEINKVREALNATTEDALILIVGERERLDKAVEVIKDRILLAFDGIPKETRGALDDGTT 420
Query: 421 EYMRPLPGKARMYPETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLDRSLAQTL 480
+++RP PG ARMYPETDIPP RI + L + K+ +PE P++K++RY+ L LA+ +
Sbjct: 421 KFLRPQPGSARMYPETDIPPRRIDEKLLEDAKKLVPESPESKMKRYI-VLGLSEELAKEI 479
Query: 481 VDDERDELFEELV---SMGVKPSLAASILVVVLKGLR-KEVPIENVTDEHIREAFQLYLE 536
+ D R +LFEELV S V P + AS + LK ++ K I + +E I E + E
Sbjct: 480 IRDPRLDLFEELVNKYSPRVPPVVIASTITNTLKYVKSKGGDISKINEEDIEELIKSIYE 539
Query: 537 GKIAKEAFEEIFKELARNPSKSAREVAEEKGLTLLSEEEVTRIIEEVIQQNIEVVKAKGM 596
+I+K++ EI E + + +++ + +L EE+ +II+++I N++ ++ +
Sbjct: 540 SRISKDSISEILVEYTTSKNVELKDIIRK--YEVLPIEELEKIIDDIINSNLDEIRKRKD 597
Query: 597 GAMGLIMGRVMAKVRGKADGKLVSQIVRRKLQEI 630
A+ LIM +VM+KV+G+ADGK+V +++R +L+ +
Sbjct: 598 KAVNLIMSKVMSKVKGRADGKIVLELIRSRLKNV 631
>gi|11499035 Glu-tRNA amidotransferase, subunit B (gatB-1) [Archaeoglobus
fulgidus] >gi|7674429|sp|O28832|YE40_ARCFU HYPOTHETICAL
PROTEIN AF1440 >gi|7483307|pir||G69429 Glu-tRNA
amidotransferase, subunit B (gatB-1) homolog -
Archaeoglobus fulgidus >gi|2649130|gb|AAB89807.1|
(AE001004) Glu-tRNA amidotransferase, subunit B (gatB-1)
[Archaeoglobus fulgidus]
Length = 613
Score = 547 bits (1394), Expect = e-154
Identities = 306/626 (48%), Positives = 427/626 (67%), Gaps = 26/626 (4%)
Query: 9 NYEELGLKVGLEIHRQLDTK-KLFSPVPSELSDKVE---FTFQRRLRPTMSELGEIDPAA 64
+Y++LGLKVG+EIH+QLDTK KLF P+ L+ +VE F F R LR SE+GE D AA
Sbjct: 3 DYKKLGLKVGIEIHQQLDTKHKLFCLCPT-LTREVEESNFEFFRYLRLKRSEIGEEDRAA 61
Query: 65 LEEFKKGRVYVYEGNYELTDLVYMDEEPPRGPDREALEVALQIAYLLNAKPVDEVYYMRK 124
EE ++ R ++Y+ Y+ T LV DEEPPR +REAL +A+Q+A +LN + VDEV+ MRK
Sbjct: 62 KEEVERSRRFIYK-YYDTTCLVEADEEPPREVNREALLIAIQVAKMLNMEVVDEVHVMRK 120
Query: 125 IVIDGSNVSGFQRTAIIATDGKVETPWGAVGIPTICLEEDAARIIERKDKEVIYRLDRLG 184
IVIDGSN +GFQRTA++A G +E VG+ T+CLEE+A R +E + +Y LDRLG
Sbjct: 121 IVIDGSNTTGFQRTALVAFGGFLEVDGKRVGVATLCLEEEACRKVEDGEGYAVYSLDRLG 180
Query: 185 IPLIEISTTPDIHHPEQAKVVAKFIGDALRATKKVKRGLGTIRQDLNVSIKGGARIEIKG 244
IPL+EI T PDI PE AK VA +G LR+T KVKRGLGTIRQD+N+SI+ GAR+EIKG
Sbjct: 181 IPLVEIGTEPDIDSPEMAKKVAARLGMILRSTGKVKRGLGTIRQDVNISIRDGARVEIKG 240
Query: 245 VQELDMIPIIIEREVERQLNLLKIRDELRKRGVKPKDIKEEFYDVTDIFENTKSKIIARV 304
VQELD++ I+E EV RQ+NLLKIR+EL++RG + ++E+ +DVTD+F NTKSKII
Sbjct: 241 VQELDILDKIVEYEVLRQVNLLKIREELKQRGAR---VEEKVFDVTDVFSNTKSKII--- 294
Query: 305 IKKGGKVLAIKLPKFRGLIGREIQPGRRLGTEFADRAKKY-VPGIFHIDELPNYGISQEE 363
+ V AI L F G++GREIQPGRRLGTEFAD AK Y + G+FH DELP YGIS+EE
Sbjct: 295 --RNKTVKAILLRGFGGIVGREIQPGRRLGTEFADIAKTYGLGGVFHTDELPAYGISEEE 352
Query: 364 VNKVIERLNLSEEDAFVLVAAEEEKAKNALREVIKRAREAIEGVPEETRRALPDGNTEYM 423
V+++ + + + DA V+ A + + + ALR +I+RA+ + GVPEETR+A DG T Y+
Sbjct: 353 VSRLRDAVGAEDGDAVVMAAGDAVRVERALRRIIERAKHCLVGVPEETRKANEDGTTSYL 412
Query: 424 RPLPGKARMYPETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLDRSLAQTLVDD 483
RPLPG ARMYPETD+PP+ + +++ + +PEL + + RY E L + LA + D
Sbjct: 413 RPLPGAARMYPETDVPPVVVTEEM---LNVEIPELIEERARRY--EKLLPKDLAWEIADS 467
Query: 484 ERDELFEELVSMGVKPSLAASILVVVLKGLRKE-VPIENVTDEHIREAFQLYLEGKIAKE 542
+FEE S ++P++ A +L + LR+E V IE + + H R + L G IAKE
Sbjct: 468 PYYRVFEE-YSEKLQPTVVARVLYLAPAALRREGVEIERLEERHYRLVLDMVLRGDIAKE 526
Query: 543 AFEEIFKELARNPSKSAREVAEEKGLTLLSEEEVTRIIEEVIQQNIEVVKAKGMGAMGLI 602
EE K L +NP SA ++ E+ G + E++ I ++I++ +++ +G GA +
Sbjct: 527 GAEEALKLLCQNPEMSAGQLKEKIG----AAEDIDGFIAKLIEEKADLIAERGEGAFKPL 582
Query: 603 MGRVMAKVRGKADGKLVSQIVRRKLQ 628
MG VM + RGK DGK+V++ +++ L+
Sbjct: 583 MGLVMKEFRGKVDGKVVAEKLKKALK 608
>gb|AAG19685.1| (AE005056) Glu-tRNA amidotransferase; GatB1 [Halobacterium sp.
NRC-1]
Length = 622
Score = 525 bits (1337), Expect = e-148
Identities = 299/633 (47%), Positives = 401/633 (63%), Gaps = 21/633 (3%)
Query: 7 KFNYEELGLKVGLEIHRQLDTK-KLFSPVPSELSDKVEF--TFQRRLRPTMSELGEIDPA 63
+F+Y+ELGL GLEIH+QLDT KLF P+ + E TF R L PT SELGEID A
Sbjct: 3 EFDYDELGLVAGLEIHQQLDTATKLFCACPTTRREPAEADRTFTRYLHPTRSELGEIDEA 62
Query: 64 ALEEFKKGRVYVYEGNYELTDLVYMDEEPPRGPDREALEVALQIAYLLNAKPVDEVYYMR 123
ALEE + R + Y Y+ T LV D+EPP D +AL AL+I +LL VD + MR
Sbjct: 63 ALEESRVEREFEYLA-YDTTCLVEEDDEPPHRLDEDALAAALEIGHLLGMDAVDRAHVMR 121
Query: 124 KIVIDGSNVSGFQRTAIIATDGKVETPWGAVGIPTICLEEDAARIIERKDKEVIYRLDRL 183
K+VIDGSN GFQR+ ++A G ++T G VGI + LEE++A+ IE ++ V+Y LDRL
Sbjct: 122 KVVIDGSNTGGFQRSTMVAEGGAIDTSEGPVGIEDLMLEEESAQRIEDREDGVLYSLDRL 181
Query: 184 GIPLIEISTTPDIHHPEQAKVVAKFIGDALRATKKVKRGLGTIRQDLNVSIKGGARIEIK 243
GIPL+EI T PDI P QA+ A+ IG LR+T KVKRGLGTIRQD+NVSI GAR+E+K
Sbjct: 182 GIPLVEIGTKPDISSPAQAREAAERIGMLLRSTGKVKRGLGTIRQDVNVSIADGARVEMK 241
Query: 244 GVQELDMIPIIIEREVERQLNLLKIRDELRKRGV---KPKDIKEEFYDVTDIFENTKSKI 300
GVQ LD I ++ EV RQ+ LL I DEL R KP+ DVTD+F +T+S +
Sbjct: 242 GVQSLDDIDDLVREEVRRQVELLDIVDELDARDAAVGKPR-------DVTDVFADTESGV 294
Query: 301 IARVIKKGGKVLAIKLPKFRGLIGREIQPGRRLGTEFADRAKKY-VPGIFHIDELPNYGI 359
I + GG+V A+ L F GL+GRE+Q RRLGTEF+D A ++ GIFH DELP YG+
Sbjct: 295 IRGALDDGGEVHAVPLHGFDGLVGRELQADRRLGTEFSDHATRHGAGGIFHTDELPAYGV 354
Query: 360 SQEEVNKVIERLNLSEEDAFVLVAAEEEKAKNALREVIKRAREAIEGVPEETRRALPDGN 419
+ EV + + + E+DA +VA + E A +++ V +RA A+ GVPEETR A DG
Sbjct: 355 TAAEVAALRDAVGAGEDDAVAIVADDPETAAQSIQAVAERAETAMAGVPEETRGANDDGT 414
Query: 420 TEYMRPLPGKARMYPETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLDRSLAQT 479
++Y+RPLPG ARMYPETD+PP+ PD + PEL KVERY ++ LD LA+
Sbjct: 415 SKYLRPLPGAARMYPETDVPPVD-PDPSAVE----TPELLTEKVERYQADFDLDAGLAEQ 469
Query: 480 LVDDERDELFEELVSMGVKPSLAASILVVVLKGLRK-EVPIENVTDEHIREAFQLYLEGK 538
+ R +LFE+ V GV +LAA L + LR+ +VP+ +TD H R L +G
Sbjct: 470 VAYGRRWQLFEQQVEAGVDATLAAQTLESTVTELRRDDVPVGRLTDAHFRGVLGLVADGD 529
Query: 539 IAKEAFEEIFKELARNPSKSAREVAEEKGLTLLSEEEVTRIIEEVIQQNIEVVKAKGMGA 598
+A+E E+ LA P +AEE GL +E+EV + V+++N + V A+GMGA
Sbjct: 530 LAQEGVPELLAALAEQPGSDPAVLAEELGLGSAAEDEVREAVVGVVERNSDQVAAEGMGA 589
Query: 599 MGLIMGRVMAKVRGKADGKLVSQIVRRKLQEIS 631
+MG M +RGKADG LVS+++R ++Q+ S
Sbjct: 590 FSALMGECMGALRGKADGDLVSEVLREEIQQRS 622
>emb|CAC12100.1| (AL445066) Glu-tRNA amidotransferase, subunit B related protein
[Thermoplasma acidophilum]
Length = 603
Score = 329 bits (835), Expect = 5e-89
Identities = 215/576 (37%), Positives = 305/576 (52%), Gaps = 25/576 (4%)
Query: 16 KVGLEIHRQLDTKKLFSPVPSELSDKVEFTFQRRLRPTMSELGEIDPAALEEFKKGRVYV 75
K+GLE+H QL+T KLF P E S F R+L + SELG ID AA E + R +
Sbjct: 4 KIGLEVHFQLNTGKLFCRCPVEQSSGELMRFSRKLHISASELGNIDAAASYESMRSRSF- 62
Query: 76 YEGNYELTD---LVYMDEEPPRGPDREALEVALQIAYLLNAKPVDEVYYMRKIVIDGSNV 132
Y +TD LV MDEEPP+ PD A+ A+ ++ LN VD + YMRKIVIDGSN
Sbjct: 63 ---QYVVTDNSCLVEMDEEPPKTPDERAIATAISVSKALNCDIVDHITYMRKIVIDGSNT 119
Query: 133 SGFQRTAIIATDGKVETPWGAVGIPTICLEEDAARIIERKDKEVIYRLDRLGIPLIEIST 192
+GFQRTAI+ +G +ET G V I T+CLEEDAAR IE V+Y LDRLGIPLIEIST
Sbjct: 120 TGFQRTAIVGINGHIETSKGPVRISTVCLEEDAARKIEEIGNTVVYSLDRLGIPLIEIST 179
Query: 193 TPDIHHPEQAKVVAKFIGDALRATKKVKRGLGTIRQDLNVSIKGGARIEIKGVQELDMIP 252
PDI + A VA+ IG + +T + + +RQD+N S+ G R+EIKGV +L I
Sbjct: 180 EPDIVDEDHAVEVARSIGYIVISTGNARHAVDAVRQDVNFSM-GYGRVEIKGVSKLTQIR 238
Query: 253 IIIEREVERQLNLLKIRDELRKRGVKPKDIKEEFYDVTDIFENTKSKIIARVIKKGGKVL 312
+I E ERQ NL D ++ RG + + DV+D+F TKSKII I+ GG
Sbjct: 239 DVIRYEKERQENLRAAVDLIKSRGGLDR-VSFNLKDVSDLFAGTKSKIIRSGIESGGVYA 297
Query: 313 AIKLPKFRGLIGREIQPGRRLGTEFADRAKKY-VPGIFHIDELPNYGISQEEVNKVIERL 371
I + + G R+G E AD + Y + G+ H DELP YG++Q+EV + L
Sbjct: 298 GI----LKNMAGTLKNGKLRMGKEIADLVRSYGIKGVMHSDELPGYGLTQDEVEALYRYL 353
Query: 372 NLSEEDAFVLVAAEEEKAKNALREVIKRAREAIEGVPEETRRALPDGNTEYMRPLPGKAR 431
+ DA +L+A + + K + R ++ I ETR + T ++RP+PGK R
Sbjct: 354 GKGDNDAVLLIAINQSRVKMIENSIFDRIQKIISMDLSETRGPAGE-ETVFLRPMPGKDR 412
Query: 432 MYPETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLDRSLAQTLVDDERDELFEE 491
MYPETDIP +++ L + P V+ V Y + + A+ + + + F
Sbjct: 413 MYPETDIPVIKVDSKLMEMSSSIKPRTYAEVVQDLVDRYGISKQNAEYIASEMVVDAFRN 472
Query: 492 LVSMGVKPSLAASILVVVLKGLR---KEVPIENVTDEHIREAFQLYLEGKIAKEAFEEIF 548
+ V+ AA IL ++ L K++ + E R + L+ + + A E ++
Sbjct: 473 IAEF-VEAREAARILTQIVPDLERRTKKIIDHDRIIELCRRSKDLHFDRYQLEMALEILY 531
Query: 549 KELARNPSKSAREVAEEKGLTLLSEEEVTRIIEEVI 584
+ V + L LS EE+ II E++
Sbjct: 532 ER------DDVASVLGDSRLKELSREEIKSIIREIL 561
>sp|Q9X100|GATB_THEMA GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT B (GLU-ADT SUBUNIT B)
>gi|7444853|pir||H72274 glutamyl tRNA-Gln
amidotransferase, subunit B - Thermotoga maritima
(strain MSB8) >gi|4981830|gb|AAD36348.1|AE001782_9
(AE001782) glutamyl tRNA-Gln amidotransferase, subunit B
[Thermotoga maritima]
Length = 482
Score = 120 bits (298), Expect = 5e-26
Identities = 97/312 (31%), Positives = 160/312 (51%), Gaps = 27/312 (8%)
Query: 331 RRLGTEFADRAKKYVPGIFHIDELPNYGISQEEVNKVIERLNLSEEDAFVLVAAEEEKAK 390
R LG D K G D N + E + R+ + ++F V E+A
Sbjct: 182 RYLGVSTGDMEK----GALRCDA--NISVVDTETGRQSNRVEVKNMNSFRFV----ERAL 231
Query: 391 NALREVIKRAREAIEGVPEETRRALPDGNTEYMRPLPGKA-----RMYPETDIPPLRIPD 445
E I +A E E V ETR D T+ + GK R +PE DIPP+ + D
Sbjct: 232 EYEFERIVKAMERGEDVERETRGW--DMATKITVSMRGKEEESDYRYFPEPDIPPVVLSD 289
Query: 446 DLKKKIKENLPELPQAKVERYVKEYKLDRSLAQTLVDD-ERDELFEELVSMGVKP-SLAA 503
+ +++K+ LPELP K ER+++EY L A+ L E E FEE V + +P L+
Sbjct: 290 EYLEEVKKELPELPDEKAERFMREYGLPEYDAKVLTSSKELAEFFEECVKVVNRPKDLSN 349
Query: 504 SILVVVLKGLRK---EVPIENVTDEHIREAFQLYLEGKIAKEAFEEIFKELARNPSKSAR 560
I+ VL+ L + E+ +T +H + F+L EGKI+ + +EIF E+ K
Sbjct: 350 WIMTEVLRELNERNIEITESKLTPQHFADLFKLMDEGKISIKIAKEIFPEVFET-GKMPS 408
Query: 561 EVAEEKGLTLLSEEE-VTRIIEEVIQQNIEVVKAKGMG---AMGLIMGRVMAKVRGKADG 616
++ EEKGLT +++E+ + ++++ ++QN + V+ G A G +G VM + +GKA+
Sbjct: 409 QIVEEKGLTQINDEKLIEELVKKAMEQNPKAVQDYKSGKKKAAGFFVGYVMRETKGKANP 468
Query: 617 KLVSQIVRRKLQ 628
+L ++I+++ L+
Sbjct: 469 ELTNRIIQKLLE 480
>sp|Q57624|GATB_METJA PROBABLE GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT B (GLU-ADT
SUBUNIT B) >gi|2129180|pir||A64320 PET112 homolog -
Methanococcus jannaschii >gi|1590917|gb|AAB98144.1|
(U67473) Glu-tRNA amidotransferase (gatB) [Methanococcus
jannaschii]
Length = 472
Score = 104 bits (258), Expect = 2e-21
Identities = 84/253 (33%), Positives = 133/253 (52%), Gaps = 21/253 (8%)
Query: 394 REVIKRAREAIEGVPEETRRALPDGN-TEYMRPLPGKA--RMYPETDIPPLRIPDDLKKK 450
+ +IKR E V ETR L T+ MR R P+ DI P+ I + K+
Sbjct: 224 KNIIKRGGE----VKRETRAFLESQMITKAMRSKETAEDYRYIPDPDIQPIVISEKWVKE 279
Query: 451 IKENLPELPQAKVERYVKEYKLDRSLAQTLVDD-ERDELFEELV-SMGVKPSLAASILVV 508
I+E +PE P AK +R+V+EY +D A+ LV D + E+FEE+V S+GV +
Sbjct: 280 IEEKMPETPLAKKKRFVEEYGIDEEDAKVLVSDLDMAEMFEEVVKSLGVNKENVDLAVTW 339
Query: 509 VLKGLRKEVPI-------ENVTDEHIREAFQLYLEGKIAKEAFEEIFKELARNPSKS-AR 560
+ LR+ + V EHI E +L EG I+++ +EI L N K +
Sbjct: 340 IRNELRRSLQYHKVDLYESGVKAEHIVELIKLIKEGVISQKIAKEIVDLLVINRGKKMPK 399
Query: 561 EVAEEKGLTLLSEEE-VTRIIEEVIQQNIEVVKAKGMG---AMGLIMGRVMAKVRGKADG 616
E+ EE GLT++ +E+ + + +EE I+ N + V+ G A+ +MG+VM RG+AD
Sbjct: 400 ELVEELGLTVIRDEDALVKAVEEAIKNNPKAVEDYLNGKKEALNFLMGQVMRLTRGRADP 459
Query: 617 KLVSQIVRRKLQE 629
K V ++++ +L +
Sbjct: 460 KRVIELLKERLDK 472
>sp|Q9Z9X0|GATB_BACHD GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT B (GLU-ADT SUBUNIT B)
>gi|11278497|pir||T44293 hypothetical protein yerN
[imported] - Bacillus halodurans
>gi|4512347|dbj|BAA75312.1| (AB011836) similar to
B.subtilis yerN gene(87% identity) [Bacillus halodurans]
>gi|10173281|dbj|BAB04386.1| (AP001509) glutamyl-tRNA
(Gln) amidotransferase subunit B [Bacillus halodurans]
Length = 476
Score = 104 bits (258), Expect = 2e-21
Identities = 78/285 (27%), Positives = 146/285 (50%), Gaps = 24/285 (8%)
Query: 359 ISQEEVNKVIERLNLSEEDAFVLVAAEEEKAKNAL-----REVIKRAREAIEGVPEETRR 413
+ QEE E NL+ + FV E E+ + A E+++ R E +
Sbjct: 201 VGQEEFGTKTELKNLNSFN-FVRKGLEYEEKRQAQVLLSGGEILQETRRYDEAANKTVLM 259
Query: 414 ALPDGNTEYMRPLPGKARMYPETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLD 473
+ +G+ +Y R +PE D+ L I D+ K +I+ +PELP A+ +RYV+E L
Sbjct: 260 RVKEGSDDY--------RYFPEPDLVALHIDDEWKARIRSEIPELPDARKKRYVEELGLP 311
Query: 474 RSLAQTL-VDDERDELFEELVSMGVKPSLAASILVVVLKGL----RKEVPIENVTDEHIR 528
A L + E + FEE ++ G P LA++ L+ + G +KE+ +T + +
Sbjct: 312 AYDAMVLTLTKEMSDFFEETIAKGADPKLASNWLMGEVSGYLNAEQKELDEVALTPDGLA 371
Query: 529 EAFQLYLEGKIAKEAFEEIFKELARNPSKSAREVAEEKGLTLLSEE-EVTRIIEEVI--- 584
+ QL +G I+ + +++FK+L E+ + KGL +S+E E+ + + EV+
Sbjct: 372 KMIQLIEKGTISSKIAKKVFKDLIEK-GGDPEEIVKAKGLVQISDEGELRKYVVEVLDNN 430
Query: 585 QQNIEVVKAKGMGAMGLIMGRVMAKVRGKADGKLVSQIVRRKLQE 629
QQ+I+ K A+G ++G++M +GKA+ +V++++ ++ +
Sbjct: 431 QQSIDDFKNGKDRAIGFLVGQIMKATKGKANPPMVNKLLLEEINK 475
>sp|O27341|GATB_METTH PROBABLE GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT B (GLU-ADT
SUBUNIT B) >gi|7444848|pir||D69037 PET112-like protein -
Methanobacterium thermoautotrophicum (strain Delta H)
>gi|2622387|gb|AAB85762.1| (AE000893) PET112-like
protein [Methanobacterium thermoautotrophicum]
Length = 449
Score = 104 bits (256), Expect = 4e-21
Identities = 108/393 (27%), Positives = 182/393 (45%), Gaps = 74/393 (18%)
Query: 15 LKVGLEIHRQLDTK-KLFSPVPSELSDKVEFTFQRRLRPTMSELGEIDPAALEEFKKGRV 73
+K GLEIH QLDT+ KLF P++ + T I P L +
Sbjct: 1 MKCGLEIHVQLDTRSKLFCRCPTDYQEAPPNT-------------NICPVCLNQ------ 41
Query: 74 YVYEGNYELTDLVYMDEEPPRGPDREALEVALQIAYLLNAKPVDEV-YYMRKIVIDGSNV 132
P P+R ALE AL+IA +L+ + E+ Y+MRK
Sbjct: 42 ---------------PGAKPYPPNRSALEGALKIALMLDCRINPEITYFMRKHYNYPDLP 86
Query: 133 SGFQRTAI-IATDGKVETPWGAVGIPTICLEEDAARIIERKDKEVIYRLDRLGIPLIEIS 191
SG+QRT+I + +G++ V I + +EED + K + +R GIPLIEI
Sbjct: 87 SGYQRTSIPVGLEGELN----GVRIREVHIEEDPGQY---KPDQGTVDFNRSGIPLIEIV 139
Query: 192 TTPDIHHPEQAKVVAKFIGDALRATKK--VKRGLGTIRQDLNVSIKGGARIEIKGVQELD 249
T PD+ PE+A+ F+ + +R + RG GT+R D+N+S++GG R+EIK + +
Sbjct: 140 TEPDMTSPEEAR---NFLRELIRVLEYSGCARGEGTMRADVNISLEGGKRVEIKNINSIK 196
Query: 250 MIPIIIEREVERQLNLLKIRDELRKRGVKPKDIKEEFYDVTDIFENTKSKIIARVIKKGG 309
++ E+ RQ NLL KRGV ++K+E T F ++ ++ +K+
Sbjct: 197 GAYKALKFEMIRQKNLL-------KRGV---EVKQE----TRAFLESQMITVSMRLKE-- 240
Query: 310 KVLAIKLPKFRGLIGREIQPGRRLGTEFADRAKKYVPGIFHIDE---LPNYGISQEEVNK 366
+ +R + ++ P + E + ++ +P H+ + YG+ +E+
Sbjct: 241 -----EAEDYRYIPDPDLPP-MKFTDEVVEGLRERIPEAPHLKVKRFMEEYGLREEDARV 294
Query: 367 VIERLNLSEEDAFVLVAAEEEKAKNALREVIKR 399
+ L L++ V + + E A +R+ +KR
Sbjct: 295 LTSELELADAFEEVAGSIDPEFAALWMRDELKR 327
Score = 92.4 bits (226), Expect = 1e-17
Identities = 76/278 (27%), Positives = 139/278 (49%), Gaps = 23/278 (8%)
Query: 363 EVNKVIERLNLSE-EDAFVLVAAEEEKAKNALREVIKRAREAIEGVPEETRRALPDGNTE 421
E K +E N++ + A+ + E + KN L+ ++ V +ETR L
Sbjct: 182 EGGKRVEIKNINSIKGAYKALKFEMIRQKNLLKRGVE--------VKQETRAFLESQMIT 233
Query: 422 YMRPLPGKARMY---PETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLDRSLAQ 478
L +A Y P+ D+PP++ D++ + ++E +PE P KV+R+++EY L A+
Sbjct: 234 VSMRLKEEAEDYRYIPDPDLPPMKFTDEVVEGLRERIPEAPHLKVKRFMEEYGLREEDAR 293
Query: 479 TLVDD-ERDELFEELVSMGVKPSLAASILVVVLKGL----RKEVPIENVTDEHIREAFQL 533
L + E + FEE V+ + P AA + LK + + +T I E +
Sbjct: 294 VLTSELELADAFEE-VAGSIDPEFAALWMRDELKRVLYYNKISFAESMITPGDIIELLAM 352
Query: 534 YLEGKIAKEAFEEIFKELARNPSKSAREVAEEKGLT-LLSEEEVTRIIEEVIQQN---IE 589
+ +I +A ++I +E+ N K RE+A E GL ++ E EV R +E+ I++N +E
Sbjct: 353 IRKKEITSKAAKKIIEEMPLN-KKGPREIATEMGLIGIIDESEVIRAVEQAIRENPGAVE 411
Query: 590 VVKAKGMGAMGLIMGRVMAKVRGKADGKLVSQIVRRKL 627
A A+ ++G+VM RGKA+ + ++++ ++
Sbjct: 412 DYHAGKEAAINFLVGQVMRMTRGKAEPERTVELIKERI 449
>sp|O66766|GATB_AQUAE GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT B (GLU-ADT SUBUNIT B)
>gi|7444847|pir||B70342 glutamyl-tRNA (Gln)
amidotransferase subunit B - Aquifex aeolicus
>gi|2983123|gb|AAC06727.1| (AE000691) glutamyl-tRNA
(Gln) amidotransferase subunit B [Aquifex aeolicus]
Length = 478
Score = 104 bits (256), Expect = 4e-21
Identities = 75/256 (29%), Positives = 139/256 (54%), Gaps = 16/256 (6%)
Query: 390 KNALREVIKRAREAIEG---VPEETRRALPDGNTEYMRPLPGKA---RMYPETDIPPLRI 443
+ AL I+R +E V +ETR P Y +A R +P+ D+ PL++
Sbjct: 224 QKALEYEIERQINVVEEGGEVVQETRTFDPQTGKTYPMRTKEEAEDYRYFPDPDLVPLKV 283
Query: 444 PDDLKKKIKENLPELPQAKVERYVKEYKLDRSLAQTLVD-DERDELFEELVSMGVKPSLA 502
+ ++IK+N+PELP + ER +KEY L A LV+ E + FEE V +P
Sbjct: 284 KKEWIEEIKKNMPELPDQRFERLIKEYGLSEYEAGILVNHKEVGDFFEEAVRHFKEPKGI 343
Query: 503 ASILVVVLKGLRKE--VPIEN--VTDEHIREAFQLYLEGKIAKEAFEEIFKELARNPSKS 558
+ L+ L GL ++ + IE V EH+ E +L E I+ + +E+ KE+ K+
Sbjct: 344 VNWLINDLLGLLRDKGISIEESPVKPEHLAELVKLIKEKVISTKIGKEVIKEMVET-GKT 402
Query: 559 AREVAEEKGLTLLSEE-EVTRIIEEVIQQN---IEVVKAKGMGAMGLIMGRVMAKVRGKA 614
++ EEKGL +++E ++ +++++ +++ +E +K +G +G+VM + RGKA
Sbjct: 403 PSQIVEEKGLKQITDENQIKELVKKIFEKHPKEVERLKQGEEKLIGFFVGQVMRETRGKA 462
Query: 615 DGKLVSQIVRRKLQEI 630
+ ++V++++R ++E+
Sbjct: 463 NPQVVNKVIRELVKEV 478
>sp|Q9ZE11|GATB_RICPR GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT B (GLU-ADT SUBUNIT B)
>gi|7444844|pir||D71725 glutamyl-tRNA amidotransferase
chain B (gatB) RP151 - Rickettsia prowazekii
>gi|3860718|emb|CAA14619.1| (AJ235270) GLUTAMYL-tRNA
AMIDOTRANSFERASE SUBUNIT B (gatB) [Rickettsia
prowazekii]
Length = 483
Score = 99.1 bits (243), Expect = 1e-19
Identities = 84/268 (31%), Positives = 135/268 (50%), Gaps = 32/268 (11%)
Query: 386 EEKAKNALREVIKRAR----------EAIEGVPEETRRALPDG-NTEYMRPLPGKA---R 431
E K N++R +IK E+ E + +ETR D T+ MR L +A R
Sbjct: 220 EIKNINSIRNIIKAIEFEAKRQVDLLESGETIIQETRLFNVDSCETKTMR-LKEEALDYR 278
Query: 432 MYPETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLDRSLAQTLVDDERDELFEE 491
+P+ D+ PL IPD+L ++K +LPELP K+E+Y+K++ L + A +V DE + E
Sbjct: 279 YFPDPDLLPLIIPDELINELKASLPELPDQKIEKYIKKFGLSQYDAGIIVSDEAVAEYFE 338
Query: 492 LVSMGVKPSLAASILVVVLKGLRKEVPIE----NVTDEHIREAFQLY----LEGKIAKEA 543
+ P + + L+ L G + I +T + +L + GKIAK
Sbjct: 339 KAANECNPKMLTNWLITELFGQLNKASIGIRECKITPSDFAKLIKLIEHDTISGKIAKTV 398
Query: 544 FEEIFKELARNPSKSAREVAEEKGLTLLSEEEV-TRIIEEVIQQNIEVVKAKGMG---AM 599
FE +F E + P K + EEK L +S+ ++ +I+EVI +N + VK G
Sbjct: 399 FEIMF-ETGKAPDK----IVEEKRLVQISDNKILNTVIDEVIAENSKSVKCYKSGKDKLF 453
Query: 600 GLIMGRVMAKVRGKADGKLVSQIVRRKL 627
G +G+VM K KA+ LV+++++ KL
Sbjct: 454 GFFVGQVMKKTECKANPTLVNKLLKDKL 481
>sp|Q9Z9G6|GATB_CHLPN GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT B (GLU-ADT SUBUNIT B)
>gi|7444854|pir||A72131 glutamyl-tRNA(Gln)
amidotransferase chain B CP0771 [imported] -
Chlamydophila pneumoniae (strains CWL029 and AR39)
>gi|4376259|gb|AAD18162.1| (AE001585) (Pet112) Glu tRNA
Gln Amidotransferase (B Subunit) [Chlamydophila
pneumoniae CWL029] >gi|7189686|gb|AAF38571.1| (AE002237)
glutamyl-tRNA(Gln) amidotransferase subunit B
[Chlamydophila pneumoniae AR39]
Length = 488
Score = 95.6 bits (234), Expect = 1e-18
Identities = 75/280 (26%), Positives = 133/280 (46%), Gaps = 14/280 (5%)
Query: 363 EVNKVIERLNLSEEDAFVLVAAEEEKAKNALREVIKRAREAIEGVPEETRRALPDGNTEY 422
E+ +E N++ AF+ A E EK + + + ++ +P T R P+
Sbjct: 209 ELRNKVEIKNMNSF-AFMAQALEAEKQRQIDEYLNQPNKDPKLVIPAATYRWDPEKKKTV 267
Query: 423 MRPLPGKARMY---PETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLDRSLAQT 479
+ L A Y PE D+P L++ + ++I++ LPELP K RY++EY L +A
Sbjct: 268 LMRLKESAEDYKYFPEPDLPTLQLTESYIERIRKTLPELPYDKYHRYIQEYGLSEDIASI 327
Query: 480 LVDDERDELFEELVSMGVKPSLAASILVVV-----LKGLRKEVPIENVTDEHIREAFQLY 534
L+ D+ F E+ K + S V V K L ++P + E + +
Sbjct: 328 LISDKNIATFFEVACKDCKNFRSLSNWVTVEFGGRCKTLGVKLPSSGIFPEGVAQLVNAI 387
Query: 535 LEGKIAKEAFEEIFKELARNPSKSAREVAEEKG--LTLLSEEEVTRIIEEVIQQNIEVV- 591
+G I + +EI + +P K+ E+ +EK L + E E+ +II EV+ N E +
Sbjct: 388 DQGVITGKIAKEIADLMMESPGKNPEEILKEKPELLPMSDEGELQKIIAEVVLANPESIV 447
Query: 592 --KAKGMGAMGLIMGRVMAKVRGKADGKLVSQIVRRKLQE 629
K A+G ++G++M + GKA K V++++ +L +
Sbjct: 448 DYKNGKTKALGFLVGQIMKRTAGKAPPKRVNELLLLELDK 487
>dbj|BAA98214.1| (AP002545) (Pet112) Glu tRNA Gln amidotransferase (B subunit)
[Chlamydophila pneumoniae J138]
Length = 488
Score = 94.8 bits (232), Expect = 3e-18
Identities = 75/280 (26%), Positives = 133/280 (46%), Gaps = 14/280 (5%)
Query: 363 EVNKVIERLNLSEEDAFVLVAAEEEKAKNALREVIKRAREAIEGVPEETRRALPDGNTEY 422
E+ +E N++ AF+ A E EK + + + ++ +P T R P+
Sbjct: 209 ELRNKVEIKNMNSF-AFMAQALEAEKQRQIDEYLNQPNKDPKLVIPAATYRWDPEKKKTV 267
Query: 423 MRPLPGKARMY---PETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLDRSLAQT 479
+ L A Y PE D+P L++ + ++I++ LPELP K RY++EY L +A
Sbjct: 268 LMRLKESAEDYKYFPEPDLPTLQLTESYIERIRKTLPELPYDKYHRYIQEYGLSEDIASI 327
Query: 480 LVDDERDELFEELVSMGVKPSLAASILVVV-----LKGLRKEVPIENVTDEHIREAFQLY 534
L+ D+ F E+ K + S V V K L ++P + E + +
Sbjct: 328 LISDKNIATFFEVACKDCKNFRSLSNWVSVEFGGRCKTLGVKLPSSGIFPEGVAQLVNAI 387
Query: 535 LEGKIAKEAFEEIFKELARNPSKSAREVAEEKG--LTLLSEEEVTRIIEEVIQQNIEVV- 591
+G I + +EI + +P K+ E+ +EK L + E E+ +II EV+ N E +
Sbjct: 388 DQGVITGKIAKEIADLMMESPGKNPEEILKEKPELLPMSDEGELQKIIAEVVLANPESIV 447
Query: 592 --KAKGMGAMGLIMGRVMAKVRGKADGKLVSQIVRRKLQE 629
K A+G ++G++M + GKA K V++++ +L +
Sbjct: 448 DYKNGKTKALGFLVGQIMKRTAGKAPPKRVNELLLLELDK 487
>gb|AAK40575.1| Glutamyl-tRNA -Gln amidotransferase, subunit B (gatB-1) [Sulfolobus
solfataricus]
Length = 458
Score = 92.8 bits (227), Expect = 1e-17
Identities = 70/246 (28%), Positives = 126/246 (50%), Gaps = 14/246 (5%)
Query: 395 EVIKRAREAIEGVPEETRRALPDGNTEYMRPLPGKA-----RMYPETDIPPLRIPDDLKK 449
E+ ++ ++G+ E D PL K R +P+ D+PP I +L +
Sbjct: 211 EIARQRASILQGIKIERETRHWDNERRVTVPLRTKETEEDYRYFPDPDLPPYSITPELIE 270
Query: 450 KIKENLPELPQAKVERYVKEYKLDRSLAQTLVDDER-DELFEELVSMGVKPSLAASILV- 507
K K +PELP + ER+VK+Y + AQ LV+++ +LFEE+ + + A++L+
Sbjct: 271 KFKREMPELPDQRAERFVKQYNVTPYQAQVLVNEKALADLFEEITNNYKNYAKVANLLIN 330
Query: 508 VVLKGLRKE---VPIENVTDEHIREAFQLYLEGKIAKEAFEEIFKELARNPSKSAREVAE 564
++ L + V HI E F+ G I+ + +E+ E+ K+ ++ +
Sbjct: 331 DYMRWLNENNITVTQSKAKANHIIELFEYLDSGLISIKIVKELLPEMILT-GKTPGQLIK 389
Query: 565 EKGLTLLSEEE-VTRIIEEVIQQNIEVV-KAK-GMGAMGLIMGRVMAKVRGKADGKLVSQ 621
EKG+T + +E + RII+EV+ + E V KAK + ++G VM K +AD ++ +
Sbjct: 390 EKGMTNIKDENYLERIIDEVLNEEKEAVEKAKRDPKVVNYLVGMVMKKTGKRADPQMTVE 449
Query: 622 IVRRKL 627
I+++KL
Sbjct: 450 IIKKKL 455
>pir||C69795 glutamyl-tRNA(Gln) amidotransferase (EC 2.6.-.-) chain B
[validated] - Bacillus subtilis
>gi|2632983|emb|CAB12489.1| (Z99107) similar to
pet112-like protein [Bacillus subtilis]
Length = 417
Score = 92.1 bits (225), Expect = 2e-17
Identities = 82/283 (28%), Positives = 145/283 (50%), Gaps = 20/283 (7%)
Query: 359 ISQEEVNKVIERLNLSEEDAFVLVAAEEEKAKNALREVIKRAREAIEGVPEETRRA-LPD 417
I QEE E NL+ AFV E E+ + +E + + I+ +ETRR
Sbjct: 142 IGQEEFGTKTELKNLNSF-AFVQKGLEHEEKR---QEQVLLSGGVIQ---QETRRYDEAT 194
Query: 418 GNTEYMRPLPGKA--RMYPETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLDRS 475
T MR G R +PE D+ L I D+ K+++K ++PELP + +RY++E L
Sbjct: 195 KKTILMRVKEGSDDYRYFPEPDLVELYIDDEWKERVKASIPELPDERRKRYIEELGLPAY 254
Query: 476 LAQTL-VDDERDELFEELVSMGVKPSLAASILV----VVLKGLRKEVPIENVTDEHIREA 530
A L + E + FEE V G + A++ L+ L +KE+ +T E +
Sbjct: 255 DAMVLTLTKEMADFFEETVQKGAEAKQASNWLMGEVSAYLNAEQKELADVALTPEGLAGM 314
Query: 531 FQLYLEGKIAKEAFEEIFKELARNPSKSAREVAEEKGLTLLSEEEV-TRIIEEVIQ---Q 586
+L +G I+ + +++FKEL A ++ +EKGL +S+E V +++ E + Q
Sbjct: 315 IKLIEKGTISSKIAKKVFKELIEK-GGDAEKIVKEKGLVQISDEGVLLKLVTEALDNNPQ 373
Query: 587 NIEVVKAKGMGAMGLIMGRVMAKVRGKADGKLVSQIVRRKLQE 629
+IE K A+G ++G++M +G+A+ +V++I+ ++++
Sbjct: 374 SIEDFKNGKDRAIGFLVGQIMKASKGQANPPMVNKILLEEIKK 416
>gb|AAF18137.1|AF205033_3 (AF205033) glutamyl-tRNAGln amidotransferase subunit B
[Staphylococcus aureus]
Length = 475
Score = 91.7 bits (224), Expect = 2e-17
Identities = 68/246 (27%), Positives = 130/246 (52%), Gaps = 15/246 (6%)
Query: 398 KRAREAIEG--VPEETRRALPD-GNTEYMRPLPGKA--RMYPETDIPPLRIPDDLKKKIK 452
++ E + G + +ETRR G T MR G R +PE DI PL I D K++++
Sbjct: 230 RQEEELLSGGEIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAWKERVR 289
Query: 453 ENLPELPQAKVERYVKEYKLDRSLAQTL-VDDERDELFEELVSMGVKPSLAASILVVVLK 511
+ +PELP + +YV E L A L + E + FE + G L ++ L+ +
Sbjct: 290 QTIPELPDERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADVKLTSNWLMGGVN 349
Query: 512 GLRKEVPIE----NVTDEHIREAFQLYLEGKIAKEAFEEIFKELARNPSKSAREVAEEKG 567
+ +E +T E++ +L +G ++ + +++F ELA +A+++ E+ G
Sbjct: 350 EYLNKNQVELLDTKLTPENLAGMIKLIEDGTMSSKIAKKVFPELAAK-GGNAKQIMEDNG 408
Query: 568 LTLLSEE-EVTRIIEEVIQQNIEVVK--AKGMG-AMGLIMGRVMAKVRGKADGKLVSQIV 623
L +S+E + + + E + N + V+ G G AMG ++G++M +G+A+ +LV+Q++
Sbjct: 409 LVQISDEATLLKFVNEALDNNEQSVEDYKNGKGKAMGFLVGQIMKASKGQANPQLVNQLL 468
Query: 624 RRKLQE 629
+++L +
Sbjct: 469 KQELDK 474
>pir||T51583 glutamyl-tRNA (Gln) amidotransferase (EC 2.6.-.-) chain B
[validated] - Bacillus subtilis
>gi|2589196|gb|AAB83965.1| (AF008553) Glu-tRNAGln
amidotransferase subunit B [Bacillus subtilis]
Length = 476
Score = 89.7 bits (219), Expect = 9e-17
Identities = 76/287 (26%), Positives = 142/287 (48%), Gaps = 28/287 (9%)
Query: 359 ISQEEVNKVIERLNLSEEDAFVLVAAEEEKAKNALREVI-------KRAREAIEGVPEET 411
I QEE E NL+ AFV E E+ + +V+ + R E +
Sbjct: 201 IGQEEFGTKTELKNLNSF-AFVQKGLEHEEKRQ--EQVLLSGFFIQQETRRYDEATKKTI 257
Query: 412 RRALPDGNTEYMRPLPGKARMYPETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYK 471
+ +G+ +Y R +PE D+ L I D+ K+++K ++PELP + +RY++E
Sbjct: 258 LMRVKEGSDDY--------RYFPEPDLVELYIDDEWKERVKASIPELPDERRKRYIEELG 309
Query: 472 LDRSLAQTL-VDDERDELFEELVSMGVKPSLAASILV----VVLKGLRKEVPIENVTDEH 526
A L + E + FEE V G + A++ L+ L +KE+ +T E
Sbjct: 310 FAAYDAMVLTLTKEMADFFEETVQKGAEAKQASNWLMGEVSAYLNAEQKELADVALTPEG 369
Query: 527 IREAFQLYLEGKIAKEAFEEIFKELARNPSKSAREVAEEKGLTLLSEEEV-TRIIEEVIQ 585
+ +L +G I+ + +++FKEL A ++ +EKGL +S+E V +++ E +
Sbjct: 370 LAGMIKLIEKGTISSKIAKKVFKELIEK-GGDAEKIVKEKGLVQISDEGVLLKLVTEALD 428
Query: 586 ---QNIEVVKAKGMGAMGLIMGRVMAKVRGKADGKLVSQIVRRKLQE 629
Q+IE K A+G ++G++M +G+A+ +V++I+ ++++
Sbjct: 429 NNPQSIEDFKNGKDRAIGFLVGQIMKASKGQANPPMVNKILLEEIKK 475
>gb|AAB87634.1| (U49788) Bacillus subtilis PET112-like protein
Length = 476
Score = 89.7 bits (219), Expect = 9e-17
Identities = 76/287 (26%), Positives = 142/287 (48%), Gaps = 28/287 (9%)
Query: 359 ISQEEVNKVIERLNLSEEDAFVLVAAEEEKAKNALREVI-------KRAREAIEGVPEET 411
I QEE E NL+ AFV E E+ + +V+ + R E +
Sbjct: 201 IGQEEFGTKTELKNLNSF-AFVQKGLEHEEKRQ--EQVLLSGFFIQQETRRYDEATKKTI 257
Query: 412 RRALPDGNTEYMRPLPGKARMYPETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYK 471
+ +G+ +Y R +PE D+ L I D+ K+++K ++PELP + +RY++E
Sbjct: 258 LMRVKEGSDDY--------RYFPEPDLVELYIDDEWKERVKASIPELPDERRKRYIEELG 309
Query: 472 LDRSLAQTL-VDDERDELFEELVSMGVKPSLAASILV----VVLKGLRKEVPIENVTDEH 526
A L + E + FEE V G + A++ L+ L +KE+ +T E
Sbjct: 310 FAAYDAMVLTLTKEMADFFEETVQKGAEAKQASNWLMGEVSAYLNAEQKELADVALTPEG 369
Query: 527 IREAFQLYLEGKIAKEAFEEIFKELARNPSKSAREVAEEKGLTLLSEEEV-TRIIEEVIQ 585
+ +L +G I+ + +++FKEL A ++ +EKGL +S+E V +++ E +
Sbjct: 370 LAGMIKLIEKGTISSKIAKKVFKELIEK-GGDAEKIVKEKGLVQISDEGVLLKLVTEALD 428
Query: 586 ---QNIEVVKAKGMGAMGLIMGRVMAKVRGKADGKLVSQIVRRKLQE 629
Q+IE K A+G ++G++M +G+A+ +V++I+ ++++
Sbjct: 429 NNPQSIEDFKNGKDRAIGFLVGQIMKASKGQANPPMVNKILLEEIKK 475
>sp|O30509|GATB_BACSU GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT B (GLU-ADT SUBUNIT B)
Length = 476
Score = 89.7 bits (219), Expect = 9e-17
Identities = 76/287 (26%), Positives = 142/287 (48%), Gaps = 28/287 (9%)
Query: 359 ISQEEVNKVIERLNLSEEDAFVLVAAEEEKAKNALREVI-------KRAREAIEGVPEET 411
I QEE E NL+ AFV E E+ + +V+ + R E +
Sbjct: 201 IGQEEFGTKTELKNLNSF-AFVQKGLEHEEKRQ--EQVLLSGFFIQQETRRYDEATKKTI 257
Query: 412 RRALPDGNTEYMRPLPGKARMYPETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYK 471
+ +G+ +Y R +PE D+ L I D+ K+++K ++PELP + +RY++E
Sbjct: 258 LMRVKEGSDDY--------RYFPEPDLVELYIDDEWKERVKASIPELPDERRKRYIEELG 309
Query: 472 LDRSLAQTL-VDDERDELFEELVSMGVKPSLAASILV----VVLKGLRKEVPIENVTDEH 526
A L + E + FEE V G + A++ L+ L +KE+ +T E
Sbjct: 310 FAAYDAMVLTLTKEMADFFEETVQKGAEAKQASNWLMGEVSAYLNAEQKELADVALTPEG 369
Query: 527 IREAFQLYLEGKIAKEAFEEIFKELARNPSKSAREVAEEKGLTLLSEEEV-TRIIEEVIQ 585
+ +L +G I+ + +++FKEL A ++ +EKGL +S+E V +++ E +
Sbjct: 370 LAGMIKLIEKGTISSKIAKKVFKELIEK-GGDAEKIVKEKGLVQISDEGVLLKLVTEALD 428
Query: 586 ---QNIEVVKAKGMGAMGLIMGRVMAKVRGKADGKLVSQIVRRKLQE 629
Q+IE K A+G ++G++M +G+A+ +V++I+ ++++
Sbjct: 429 NNPQSIEDFKNGKDRAIGFLVGQIMKASKGQANPPMVNKILLEEIKK 475
Score = 73.4 bits (177), Expect = 7e-12
Identities = 99/407 (24%), Positives = 160/407 (38%), Gaps = 95/407 (23%)
Query: 17 VGLEIHRQLDTK-KLFSPVPSELSDKVEFTFQRRLRPTMSELGEIDPAALEEFKKGRVYV 75
+GLE+H +L TK K+FS P+ F + + ++ +LG P L K
Sbjct: 7 IGLEVHVELKTKSKIFSSSPTP------FGAEANTQTSVIDLGY--PGVLPVLNK----- 53
Query: 76 YEGNYELTDLVYMDEEPPRGPDREALEVALQIAYLLNAKPVDEVYYMRKIVIDGSNVSGF 135
EA+E A++ A LN + + + RK N +
Sbjct: 54 -----------------------EAVEFAMKAAMALNCEIATDTKFDRKNYFYPDNPKAY 90
Query: 136 QRTAI---IATDGKVETPWGA----VGIPTICLEEDAARIIERKDKEVIYRLDRLGIPLI 188
Q + I +G +E G +GI + LEEDA ++ D + +R G PL+
Sbjct: 91 QISQFDKPIGENGWIEIEVGGKTKRIGITRLHLEEDAGKLTHTGDGYSLVDFNRQGTPLV 150
Query: 189 EISTTPDIHHPEQAKVVAKFIGDALRAT--KKVKRGLGTIRQDLNVSIKG------GARI 240
EI + PDI PE+A + + ++ T K G++R D N+S++ G +
Sbjct: 151 EIVSEPDIRTPEEAYAYLEKLKSIIQYTGVSDCKMEEGSLRCDANISLRPIGQEEFGTKT 210
Query: 241 EIKGVQELDMIPIIIEREVERQLNLLK----IRDELRKRGVKPKDIKEEFYDVTDIFENT 296
E+K + + +E E +RQ +L I+ E R+ YD E T
Sbjct: 211 ELKNLNSFAFVQKGLEHEEKRQEQVLLSGFFIQQETRR------------YD-----EAT 253
Query: 297 KSKIIARVIKKGGKVLAIKLPKFRGLIGREIQPGRRLGTEFADRAKKYVPGIFHIDELPN 356
K I+ RV + P L + E+ +R K +P ELP+
Sbjct: 254 KKTILMRVKEGSDDYRYFPEPDLVELY---------IDDEWKERVKASIP------ELPD 298
Query: 357 YGISQEEVNKVIERLNLSEEDAFVLVAAEEEKAKNALREVIKRAREA 403
E + IE L + DA VL +E + E +++ EA
Sbjct: 299 -----ERRKRYIEELGFAAYDAMVLTLTKE--MADFFEETVQKGAEA 338
>pir||B81722 glutamyl-tRNA(Gln) amidotransferase chain B TC0272 [imported] -
Chlamydia muridarum (strain Nigg)
>gi|7190312|gb|AAF39140.1| (AE002294) glutamyl-tRNA(Gln)
amidotransferase subunit B [Chlamydia muridarum]
Length = 488
Score = 88.5 bits (216), Expect = 2e-16
Identities = 75/286 (26%), Positives = 128/286 (44%), Gaps = 21/286 (7%)
Query: 360 SQEEVNKV-IERLNLSEEDAFVLVAAEEEKAKNALREVIKRAREAIEGVPEETRRALPDG 418
S+E NKV I+ +N F+ A E EK + + + + VP T R P+
Sbjct: 207 SKELRNKVEIKNMN---SFTFMAQALEAEKHRQIEEYLSHPNEDPKKVVPAATYRWDPEK 263
Query: 419 NTEYMRPLPGKARMYP---ETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLDRS 475
+ L +A Y E D+P L+I + ++++ LPELP +K RY+ ++ L
Sbjct: 264 KKTVLMRLKERAEDYMYFVEPDLPVLQITESYIDEVRQTLPELPHSKYMRYITDFDLAED 323
Query: 476 LAQTLVDDERDELFEELVSMGVKPSLAASILVVV-----LKGLRKEVPIENVTDEHIREA 530
LA LV D F E +M K A S + V K K +P + E + +
Sbjct: 324 LAMILVSDRHTAHFFETATMSCKNYRALSNWITVEFAGRCKATGKTLPFTGILPEWVAQL 383
Query: 531 FQL----YLEGKIAKEAFEEIFKELARNPSKSAREVAEEKGLTLLSEEEVTRIIEEVIQQ 586
+ GKIAKE +++ +P R L + + + I++EV+ Q
Sbjct: 384 VNFIDRGVITGKIAKEIADKMVSSFGESPEDILRR--HPSLLPMTDDHALRAIVKEVVAQ 441
Query: 587 N---IEVVKAKGMGAMGLIMGRVMAKVRGKADGKLVSQIVRRKLQE 629
N +E K A+G ++G++M + GKA K V++++ +++
Sbjct: 442 NAASVEDYKNGKAKALGFLVGQIMKRTEGKAPPKRVNELLLAAMRD 487
>sp|P74215|GATB_SYNY3 GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT B (GLU-ADT SUBUNIT B)
>gi|7429249|pir||S75850 pet112 protein - Synechocystis
sp. (strain PCC 6803) >gi|1653395|dbj|BAA18309.1|
(D90913) PET112 [Synechocystis sp.]
Length = 519
Score = 88.2 bits (215), Expect = 3e-16
Identities = 78/284 (27%), Positives = 133/284 (46%), Gaps = 22/284 (7%)
Query: 359 ISQEEVNKVIERLNLSEEDAFV-LVAAEEEKAKNAL---REVIKRAREAIEGVPEETRRA 414
+ Q+E +E N++ A + E E+ A+ E+ + R EG
Sbjct: 244 VGQKEFGTKVEIKNMNSFSAIQKAIEYEIERQIKAIADGEEIYQETRLWEEGSQRTISMR 303
Query: 415 LPDGNTEYMRPLPGKARMYPETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLDR 474
+G+++Y R +PE D+PPL + + K+ LPELP AK RY ++ L
Sbjct: 304 KKEGSSDY--------RYFPEPDLPPLEVSEQQKQTWFATLPELPSAKRARYEQKLGLSA 355
Query: 475 SLAQTLVDDERDEL-FEELVSMGVKPSLAAS----ILVVVLKGLRKEVPIENVTDEHIRE 529
A+ L +D L FEE V+ G P A+ + L R + + + E
Sbjct: 356 YDARVLTEDRDVALYFEEAVNAGADPKAVANWVTQDIAAYLNNNRLTISGLALKPSALAE 415
Query: 530 AFQLYLEGKIAKEAFEEIFKELARNPSKSAREVAEEKGLTLLSE-EEVTRIIEEVIQQNI 588
L +G I+ + ++I EL S +++ E +GL +S+ +E+T II+ VI +
Sbjct: 416 LIDLITKGTISGKIAKDILPELLEK-GGSPQKIIEARGLVQISDPDELTAIIQAVIADHP 474
Query: 589 EVVK--AKGMGAM-GLIMGRVMAKVRGKADGKLVSQIVRRKLQE 629
+ ++ G G M G +G+VM + GKAD KL +Q++ + L +
Sbjct: 475 KELEKFRSGKGNMQGFFVGQVMKRTGGKADPKLTNQLIGKLLAQ 518
>sp|Q45486|GATB_STASP GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT B (GLU-ADT SUBUNIT B)
>gi|1354211|gb|AAB61381.1| (U49790) PET112-like protein
[Bacillus subtilis]
Length = 475
Score = 85.8 bits (209), Expect = 1e-15
Identities = 65/244 (26%), Positives = 127/244 (51%), Gaps = 15/244 (6%)
Query: 398 KRAREAIEG--VPEETRRALPD-GNTEYMRPLPGKA--RMYPETDIPPLRIPDDLKKKIK 452
++ E + G + +ETRR G T MR G R + E DI PL + +D K +++
Sbjct: 230 RQEEELLNGGEIGQETRRFDESTGKTILMRVKEGSDDYRYFLEPDIVPLYVDEDWKARVR 289
Query: 453 ENLPELPQAKVERYVKEYKLDRSLAQTL-VDDERDELFEELVSMGVKPSLAASILV---- 507
E +PELP + +YV + L A L + E + FE + G L ++ L+
Sbjct: 290 ETIPELPDERKAKYVNDLGLPEYDAHVLTLTKEMSDFFEGAIDHGADVKLTSNWLMGGVN 349
Query: 508 VVLKGLRKEVPIENVTDEHIREAFQLYLEGKIAKEAFEEIFKELARNPSKSAREVAEEKG 567
L + E+ +T E++ +L +G ++ + +++F ELA N A+++ E+KG
Sbjct: 350 EYLNKNQVELKDTQLTPENLAGMIKLIEDGTMSSKIAKKVFPELAEN-GGDAKQIMEDKG 408
Query: 568 LTLLSEE-EVTRIIEEVIQQNIEVVK--AKGMG-AMGLIMGRVMAKVRGKADGKLVSQIV 623
L +S+E + + + + + N + ++ G G AMG ++G++M +G+A+ + V+ ++
Sbjct: 409 LVQISDEATLLKFVTDALDNNPQSIEDYKNGKGKAMGFLVGQIMKASKGQANPQKVNSLL 468
Query: 624 RRKL 627
+++L
Sbjct: 469 KQEL 472
>sp|O84007|GATB_CHLTR GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT B (GLU-ADT SUBUNIT B)
>gi|7444855|pir||G71568 probable (pet112) glu-tRNA gln
amidotransferase (b chain) - Chlamydia trachomatis
(serotype D, strain UW3/Cx) >gi|3328392|gb|AAC67594.1|
(AE001275) (Pet112) Glu-tRNA Gln Amidotransferase (B
Subunit) [Chlamydia trachomatis]
Length = 488
Score = 85.4 bits (208), Expect = 2e-15
Identities = 76/290 (26%), Positives = 129/290 (44%), Gaps = 27/290 (9%)
Query: 360 SQEEVNKV-IERLNLSEEDAFVLVAAEEEKAKNALREVIKRAREAIEGVPEETRRALPDG 418
S+E NKV I+ +N F+ A E EK + + + + VP T R P+
Sbjct: 207 SRELRNKVEIKNMN---SFTFMAQALEAEKRRQIEEYLSYPNEDPKKVVPAATYRWDPEK 263
Query: 419 NTEYMRPLPGKARMYP---ETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLDRS 475
+ L +A Y E D+P L+I + ++++ LPELP +K RY+ ++ +
Sbjct: 264 KKTVLMRLKERAEDYMYFVEPDLPVLQITETYIDEVRQTLPELPHSKYMRYITDFDIAED 323
Query: 476 LAQTLVDDERDELFEELVSMGVKPSLAASILVVV-----LKGLRKEVPIENVTDEHIREA 530
LA LV D F E +M K A S + V K K +P + E + +
Sbjct: 324 LAMILVGDRHTAHFFETATMSCKNYRALSNWITVEFAGRCKARGKTLPFTGILPEWVAQL 383
Query: 531 FQL----YLEGKIAKEAFEEIFKELARNPSKSAREVAEEKGLTLLSEEEVTRIIEEVIQQ 586
+ GKIAKE + + +P R L + + + I++EV+ Q
Sbjct: 384 VNFIDRGVITGKIAKEIADRMVSSFGESPEDILRR--HPSLLPMTDDHALRAIVKEVVAQ 441
Query: 587 NIEVV------KAKGMGAMGLIMGRVMAKVRGKADGKLVSQIVRRKLQEI 630
N V KAK A+G ++G++M + GKA K V++++ ++++
Sbjct: 442 NTASVADYKNGKAK---ALGFLVGQIMKRTEGKAPPKRVNELLLAAMRDM 488
>pir||A83085 Glu-tRNA(Gln) amidotransferase subunit B PA4484 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9950722|gb|AAG07872.1|AE004862_6 (AE004862)
Glu-tRNA(Gln) amidotransferase subunit B [Pseudomonas
aeruginosa]
Length = 481
Score = 79.2 bits (192), Expect = 1e-13
Identities = 77/264 (29%), Positives = 127/264 (47%), Gaps = 32/264 (12%)
Query: 390 KNALREVIKRAREAIEG---VPEETRRALPDGNTEYMRPLPGKA-----RMYPETDIPPL 441
+ A+ I+R E IE V +ETR L D N + R + GK R +P D+ P+
Sbjct: 224 EKAINHEIQRQIELIEDGGKVVQETR--LYDPNKDETRSMRGKEEANDYRYFPCPDLLPV 281
Query: 442 RIPDDLKKKIKENLPELPQAKVERYVKEYKLDRSLAQTL-VDDERDELFEELVSMGVKPS 500
I + K++E LPELP K ER+ +Y L A L E + FE++ +
Sbjct: 282 VIEPEYLAKLREQLPELPVQKRERFESQYGLSAYDASVLSASREMADYFEKVQGICGDAK 341
Query: 501 LAASILVVVLKGLRK----EVPIENVTDEH----IREAFQLYLEGKIAKEAFEEIFKELA 552
LAA+ ++V L L E+ V+ E I + GK+AK FE +
Sbjct: 342 LAANWVMVELGSLLNKDGLEIEQSPVSAEQLGGMILRIKDNTISGKLAKMVFEAM----- 396
Query: 553 RNPSKSAREVAEEKGLTLLSEE-EVTRIIEEVIQQNIEVV-------KAKGMGAMGLIMG 604
N SA ++ E KGL +++ + ++++EV+ N E V +AK G +G
Sbjct: 397 ANGEGSADQIIEAKGLKQVTDSGAIEKMLDEVLAANAEQVEQYRAADEAKRGKMFGFFVG 456
Query: 605 RVMAKVRGKADGKLVSQIVRRKLQ 628
+ M +GKA+ + V++++++KL+
Sbjct: 457 QAMKASKGKANPQQVNELLKKKLE 480
>pir||B64602 PET112-like protein - Helicobacter pylori (strain 26695)
>gi|2313783|gb|AAD07723.1| (AE000579) Glu-tRNA(Gln)
amidotransferase, subunit B (gatB) [Helicobacter pylori
26695]
Length = 475
Score = 78.4 bits (190), Expect = 2e-13
Identities = 75/282 (26%), Positives = 134/282 (46%), Gaps = 12/282 (4%)
Query: 356 NYGISQEEVNKVIERLNLSEEDAFVLVAAEEEKAKNALREVIKRAREAIEGVPEETRRAL 415
N I + K+ R+ + ++F +A E + R E V E
Sbjct: 195 NVSIRPKGDEKLYTRVEIKNLNSFRFIAKAIEYEIERQSAAWENGRYNEEVVQETRLFDT 254
Query: 416 PDGNTEYMRPLPGKA--RMYPETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLD 473
G T MR A R + + D+ P+ I + L K+ ++ + ELP AK RY+K++ L
Sbjct: 255 HKGITLSMRNKEESADYRYFKDPDLYPVFIDEKLLKEAQK-INELPSAKKIRYMKDFNLK 313
Query: 474 RSLAQTLVDDE-RDELFEELVSMGVKPSLAASILVVVLKG-LRKEVPIENV-TDEHIREA 530
A LV D + FE ++ +GVK + + L V L G L+ E+ +EN H+ A
Sbjct: 314 EDDANLLVSDPLLAQYFESMLHLGVKAKTSVTWLCVELLGRLKAEITLENCGVSTHMLGA 373
Query: 531 FQLYL-EGKIAKEAFEEIFKELARNPSKSAREVAEEKGLTLLSE-EEVTRIIEEVIQQNI 588
+ EGKI+ ++ +++ +L + E+ GL+ +++ E + ++IEEV++ N
Sbjct: 374 LAKRIDEGKISGKSAKDVLDKLLEEQGGDVDALIEQMGLSQVNDTEAIVKVIEEVLKNNA 433
Query: 589 EVVKAKGMG---AMGLIMGRVMAKVRGKADGKLVSQIVRRKL 627
+ V G G +G+ M ++G A+ +V+ I++ KL
Sbjct: 434 DKVLEYKSGKDKLFGFFVGQAMKNLKG-ANPSVVNAILKEKL 474
>sp|Q9ZLH6|GATB_HELPJ GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT B (GLU-ADT SUBUNIT B)
>gi|7444845|pir||A71911 glu-tRNA amidotransferase, chain
B - Helicobacter pylori (strain J99)
>gi|4155155|gb|AAD06184.1| (AE001492) GLU-TRNA
AMIDOTRANSFERASE, SUBUNIT B [Helicobacter pylori J99]
Length = 474
Score = 78.4 bits (190), Expect = 2e-13
Identities = 75/282 (26%), Positives = 134/282 (46%), Gaps = 12/282 (4%)
Query: 356 NYGISQEEVNKVIERLNLSEEDAFVLVAAEEEKAKNALREVIKRAREAIEGVPEETRRAL 415
N I + K+ R+ + ++F +A E + R E V E
Sbjct: 194 NVSIRPKGDEKLYTRVEIKNLNSFRFIAKAIEYEIERQSVAWENGRYNEEVVQETRLFDT 253
Query: 416 PDGNTEYMRPLPGKA--RMYPETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLD 473
G T MR A R + + D+ P+ I + L K+ ++ + ELP AK RY+K++ L
Sbjct: 254 AKGITLSMRNKEESADYRYFKDPDLYPVFIDEKLLKEAQK-INELPGAKKIRYMKDFNLK 312
Query: 474 RSLAQTLVDDE-RDELFEELVSMGVKPSLAASILVVVLKG-LRKEVPIEN--VTDEHIRE 529
A LV D E FE ++++GVK + + L V L G L+ EV +EN ++ +
Sbjct: 313 EDDANLLVSDPLLAEYFESMLNLGVKAKTSVTWLCVELLGRLKAEVTLENCGISAHALGA 372
Query: 530 AFQLYLEGKIAKEAFEEIFKELARNPSKSAREVAEEKGLTLLSE-EEVTRIIEEVIQQNI 588
+ EGKI+ ++ +++ L + E+ GL+ +++ E + ++IEEV++ N
Sbjct: 373 LAKRIDEGKISGKSAKDVLDRLLEEQGGDVDTLIEQMGLSQVNDTEAIVKVIEEVLKNNA 432
Query: 589 EVVKAKGMG---AMGLIMGRVMAKVRGKADGKLVSQIVRRKL 627
+ V G G +G+ M ++G A+ +V+ I++ KL
Sbjct: 433 DKVLEYKSGKDKLFGFFVGQAMKNLKG-ANPSVVNAILKEKL 473
>sp|O25372|GATB_HELPY GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT B (GLU-ADT SUBUNIT B)
Length = 474
Score = 78.4 bits (190), Expect = 2e-13
Identities = 75/282 (26%), Positives = 134/282 (46%), Gaps = 12/282 (4%)
Query: 356 NYGISQEEVNKVIERLNLSEEDAFVLVAAEEEKAKNALREVIKRAREAIEGVPEETRRAL 415
N I + K+ R+ + ++F +A E + R E V E
Sbjct: 194 NVSIRPKGDEKLYTRVEIKNLNSFRFIAKAIEYEIERQSAAWENGRYNEEVVQETRLFDT 253
Query: 416 PDGNTEYMRPLPGKA--RMYPETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLD 473
G T MR A R + + D+ P+ I + L K+ ++ + ELP AK RY+K++ L
Sbjct: 254 HKGITLSMRNKEESADYRYFKDPDLYPVFIDEKLLKEAQK-INELPSAKKIRYMKDFNLK 312
Query: 474 RSLAQTLVDDE-RDELFEELVSMGVKPSLAASILVVVLKG-LRKEVPIENV-TDEHIREA 530
A LV D + FE ++ +GVK + + L V L G L+ E+ +EN H+ A
Sbjct: 313 EDDANLLVSDPLLAQYFESMLHLGVKAKTSVTWLCVELLGRLKAEITLENCGVSTHMLGA 372
Query: 531 FQLYL-EGKIAKEAFEEIFKELARNPSKSAREVAEEKGLTLLSE-EEVTRIIEEVIQQNI 588
+ EGKI+ ++ +++ +L + E+ GL+ +++ E + ++IEEV++ N
Sbjct: 373 LAKRIDEGKISGKSAKDVLDKLLEEQGGDVDALIEQMGLSQVNDTEAIVKVIEEVLKNNA 432
Query: 589 EVVKAKGMG---AMGLIMGRVMAKVRGKADGKLVSQIVRRKL 627
+ V G G +G+ M ++G A+ +V+ I++ KL
Sbjct: 433 DKVLEYKSGKDKLFGFFVGQAMKNLKG-ANPSVVNAILKEKL 473
>pir||G81325 Glu-tRNAGln amidotransferase chain B Cj1197c [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968630|emb|CAB73451.1| (AL139077) Glu-tRNAGln
amidotransferase subunit B [Campylobacter jejuni]
Length = 472
Score = 78.0 bits (189), Expect = 3e-13
Identities = 77/300 (25%), Positives = 136/300 (44%), Gaps = 33/300 (11%)
Query: 347 GIFHIDELPNYGISQEEVNKVIERLNLSEEDAFVLVAAEEEKAKNALREVIKRAREAIEG 406
G F D N I + K+ R+ + ++F + + A+ +KR EA E
Sbjct: 186 GSFRCDA--NVSIRPKGDTKLYTRVEIKNLNSFRFI-------QKAIEYEVKRQSEAWED 236
Query: 407 ------VPEETRRALPDGNTEYMRPLPGKA-----RMYPETDIPPLRIPDDLKKKIKENL 455
V +ETR L D R + GK R +P+ D+ P+ + D+ + +
Sbjct: 237 GTYEQEVVQETR--LFDTTNLVTRSMRGKEEAAEYRYFPDPDLLPVLLKDEF---LDIKI 291
Query: 456 PELPQAKVERYVKEYKLDRSLAQTLVDD-ERDELFEELVSMGVKPSLAASILVVVLKGLR 514
PELP K R++ + + S A+ L+ E FE L+S + P L + L L GL
Sbjct: 292 PELPDEKKVRFIDKLGIKESDAEVLISSLEMSRFFESLISQNLNPKLCVNWLNTELMGLL 351
Query: 515 K-EVPIEN--VTDEHIREAFQLYLEGKIAKEAFEEIFKELARNPSKSAREVAEEKGLTLL 571
K E+ IEN V + + + +G I+ +A +++ + N S E E+ GL +
Sbjct: 352 KGELTIENSPVDAQKLGVLIKRIEDGTISAKAAKDVLAFVFENTSVEIDEAIEKLGLKQV 411
Query: 572 SEEE-VTRIIEEVIQQNIEVVKAKGMG---AMGLIMGRVMAKVRGKADGKLVSQIVRRKL 627
S++ + +IE+++ N + V G G +G+ M + +G + V++I++ KL
Sbjct: 412 SDDSAIEAVIEQILNANADKVAEYKSGKDKLFGFFVGQTMKEGKGAFNPAKVNEILKTKL 471
>gi|11499699 Glu-tRNA amidotransferase, subunit B (gatB-2) [Archaeoglobus
fulgidus] >gi|7674033|sp|O28164|GATB_ARCFU PROBABLE
GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT B (GLU-ADT
SUBUNIT B) >gi|7444850|pir||D69514 Glu-tRNA
amidotransferase, subunit B (gatB-2) homolog -
Archaeoglobus fulgidus >gi|2648412|gb|AAB89135.1|
(AE000958) Glu-tRNA amidotransferase, subunit B (gatB-2)
[Archaeoglobus fulgidus]
Length = 492
Score = 77.6 bits (188), Expect = 4e-13
Identities = 59/212 (27%), Positives = 113/212 (52%), Gaps = 23/212 (10%)
Query: 431 RMYPETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLDRSLAQTLV-DDERDELF 489
R +PE D+ P+ + +++ ++++ LPE+P+ K ER ++Y + + A+ L+ D + + F
Sbjct: 288 RYFPEPDLVPV-LTEEIVREVEGTLPEMPEEKRERLKRQYGIGDNFAKVLILDVKMADYF 346
Query: 490 EELVSMGVKPSLAASILVVVLKGLRKEVPIENVTDEHIREAFQLYLEGKIAK--EAFEEI 547
EE+ + V P LAAS +V VL+G N D + ++++ + AK + FEE
Sbjct: 347 EEVAKL-VDPKLAASWIVDVLRGEL------NYRDWSFAKCWEVFKPEEFAKLLKYFEED 399
Query: 548 ------FKELARNPSKSARE---VAEEKGLTLLSEEEVTRIIEEVIQQNIEVVKAKGMG- 597
E+ R E + ++KGL + +EE+ + +E I++N + V+ G
Sbjct: 400 RITEKGVVEVIRTKLDEGGEIDAIIQKKGLFAIPKEEIIKFCKEAIEENPKAVEDYLSGK 459
Query: 598 --AMGLIMGRVMAKVRGKADGKLVSQIVRRKL 627
A+ ++G+VM K RG+AD ++++ L
Sbjct: 460 RQALNFLVGQVMKKTRGRADPADTAKLIEEML 491
>gb|AAG18915.1| (AE004994) Glu-tRNA amidotransferase; GatB2 [Halobacterium sp.
NRC-1]
Length = 495
Score = 73.4 bits (177), Expect = 7e-12
Identities = 78/276 (28%), Positives = 126/276 (45%), Gaps = 20/276 (7%)
Query: 367 VIERLNLSEEDAFVLVAAEEEKAKNALREVIKRAREAIE---GVPEETRR-ALPDGNTEY 422
V+E N +E V + A+ AL R R +E V +ETR G T
Sbjct: 226 VLEAANRTE----VKNISSHRAAQKALAYETTRQRNQLERGMAVAQETRHWDEARGVTVS 281
Query: 423 MRPLPGKA--RMYPETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLDRSLAQTL 480
MR + R + E DIPPL + D K +I +PELP A+ ER+ EY + A L
Sbjct: 282 MRSKEEEKDYRYFREADIPPLEV-SDWKDEIP--IPELPDARRERFRTEYGVGDETASKL 338
Query: 481 VDDER-DELFEELVSMGVKPSLAASILVVVLKGLR-KEVPIENVTD--EHIREAFQLYLE 536
+ +LFEEL A + VL L +++ +++V D + +L E
Sbjct: 339 TSRKAVADLFEELADEYDAALAATWVADNVLGELNYRDLSLDDVADRDDEFERLVELVAE 398
Query: 537 GKIAKEAFEEIFKELARNPSKSAREVAEEKGLTLLSEEEVTRIIEEVIQQNIEVVKAKGM 596
+I + EE+ + ++ E+ + +GL S + V + E I +N + V
Sbjct: 399 DEITAKNAEEVVLRTMLDEDRAPDEIVDAEGLGKTSGDAVADAVAEAIAENPDAVADYHD 458
Query: 597 G---AMGLIMGRVMAKVRGKADGKLVSQIVRRKLQE 629
G A+ ++G+VMAK G AD V++++R +L +
Sbjct: 459 GEGDALNFLVGQVMAKTGGSADPGQVNELLRDELAQ 494
>pir||E81849 Glu-tRNAGln amidotransferase subunit A NMA1570 [imported] -
Neisseria meningitidis (group A strain Z2491)
>gi|7380211|emb|CAB84797.1| (AL162756) Glu-tRNAGln
amidotransferase subunit A [Neisseria meningitidis
Z2491]
Length = 476
Score = 70.6 bits (170), Expect = 5e-11
Identities = 57/210 (27%), Positives = 100/210 (47%), Gaps = 17/210 (8%)
Query: 431 RMYPETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLDRSLAQTLVDDE-RDELF 489
R +P+ D+ P+ I DD +K K +PELP+ R+V +Y + A+ L + F
Sbjct: 270 RYFPDPDLLPVIISDDRLQKAKAEMPELPKEMAARFVADYGVSDYDARLLTASRVQAAYF 329
Query: 490 EELVSMGVKPSLAAS----ILVVVLKGLRKEVPIENVTDEHIREAFQLYLEG----KIAK 541
EE + L A+ L L E+ +T + +G K+AK
Sbjct: 330 EEAAKESGQGKLTANWMNGELAATLNKEGMELADSPITAPRLAALVGKIADGTLSSKLAK 389
Query: 542 EAFEEIFKELARNPSKSAREVAEEKGLTLLSEE-EVTRIIEEVIQQN---IEVVKAKGMG 597
+AFE ++ E P S E+ E+ GL +++ + +++EV+ N +E K+
Sbjct: 390 KAFEAMWAE----PEASIAEIIEKHGLQQMTDTGAIEAMVDEVLANNAKAVEQFKSGNEK 445
Query: 598 AMGLIMGRVMAKVRGKADGKLVSQIVRRKL 627
A+ I+G+VM +GKA+ V ++++ KL
Sbjct: 446 ALNAIVGQVMKASKGKANPAQVQELIKAKL 475
>pir||G81091 Glu-tRNA(Gln) amidotransferase, chain B NMB1358 [imported] -
Neisseria meningitidis (group B strain MD58)
>gi|7226603|gb|AAF41732.1| (AE002484) Glu-tRNA(Gln)
amidotransferase, subunit B [Neisseria meningitidis
MC58]
Length = 476
Score = 69.9 bits (168), Expect = 8e-11
Identities = 56/210 (26%), Positives = 100/210 (46%), Gaps = 17/210 (8%)
Query: 431 RMYPETDIPPLRIPDDLKKKIKENLPELPQAKVERYVKEYKLDRSLAQTLVDDE-RDELF 489
R +P+ D+ P+ I D +K K +PELP+ R+V +Y + A+ L + F
Sbjct: 270 RYFPDPDLLPVIISDAQMQKAKAEMPELPKEMAARFVADYGVSEYDARLLTASRAQAAYF 329
Query: 490 EELVSMGVKPSLAAS----ILVVVLKGLRKEVPIENVTDEHIREAFQLYLEG----KIAK 541
EE + L A+ L L E+ +T + +G K+AK
Sbjct: 330 EEAAKESGQGKLTANWMNGELAAALNKEGMELADSPITAPRLAALVGKIADGTLSSKLAK 389
Query: 542 EAFEEIFKELARNPSKSAREVAEEKGLTLLSEE-EVTRIIEEVIQQN---IEVVKAKGMG 597
+AFE ++ E P + E+ E+ GL +++ E+ +++EV+ N +E K+
Sbjct: 390 KAFEAMWAE----PEATIAEIIEKHGLQQMTDTGEIEAMVDEVLANNAKAVEQFKSGNEK 445
Query: 598 AMGLIMGRVMAKVRGKADGKLVSQIVRRKL 627
A+ I+G+VM +GKA+ V ++++ KL
Sbjct: 446 ALNAIVGQVMKASKGKANPAQVQELIKAKL 475
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.138 0.377
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 223105059
Number of Sequences: 2977
Number of extensions: 9930539
Number of successful extensions: 38390
Number of sequences better than 1.0e-10: 36
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 38201
Number of HSP's gapped (non-prelim): 84
length of query: 633
length of database: 189,106,746
effective HSP length: 61
effective length of query: 572
effective length of database: 152,599,039
effective search space: 87286650308
effective search space used: 87286650308
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 168 (69.9 bits)