BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1905 (PAB1905) DE:Hypothetical protein
         (146 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75111 hypothetical protein PAB1905 - Pyrococcus abyssi (st...   294  3e-79
pir||H71021 hypothetical protein PH1469 - Pyrococcus horikoshii ...   275  2e-73
pir||E70434 conserved hypothetical protein aq_1549 - Aquifex aeo...   100  1e-20
pir||C83564 conserved hypothetical protein PA0653 [imported] - P...    96  2e-19
pir||H81067 conserved hypothetical protein NMB1564 [imported] - ...    95  4e-19
emb|CAC12531.1| (AL445067) conserved hypothetical protein [Therm...    95  4e-19
sp|P24246|YHFA_ECOLI HYPOTHETICAL 14.5 KD PROTEIN IN PRKB-CRP IN...    91  6e-18
emb|CAA61607.1| (X89443) ORF2 [Erwinia chrysanthemi]                   89  2e-17
pir||S19719 14K hypothetical protein (crp reion) - Escherichia c...    86  2e-16
pir||A81800 hypothetical protein NMA1753 [imported] - Neisseria ...    83  1e-15
pir||H72316 conserved hypothetical protein - Thermotoga maritima...    82  4e-15
pir||H75426 conserved hypothetical protein - Deinococcus radiodu...    76  1e-13
pir||G82411 conserved hypothetical protein VCA0838 [imported] - ...    73  1e-12

>pir||H75111 hypothetical protein PAB1905 - Pyrococcus abyssi (strain Orsay)
           >gi|5458120|emb|CAB49609.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 146
           
 Score =  294 bits (745), Expect = 3e-79
 Identities = 146/146 (100%), Positives = 146/146 (100%)

Query: 1   MKIMTIVKGRVRWIEGEQFIGRIEGDQCSVILGEGGISPMKLLLLSVAGCTAYDVVMILE 60
           MKIMTIVKGRVRWIEGEQFIGRIEGDQCSVILGEGGISPMKLLLLSVAGCTAYDVVMILE
Sbjct: 1   MKIMTIVKGRVRWIEGEQFIGRIEGDQCSVILGEGGISPMKLLLLSVAGCTAYDVVMILE 60

Query: 61  KMREPIKGLEVEIEGVRREEHPRIYKEVTIHYRIYGNVDEKKARRAIELSQEKYCSASAH 120
           KMREPIKGLEVEIEGVRREEHPRIYKEVTIHYRIYGNVDEKKARRAIELSQEKYCSASAH
Sbjct: 61  KMREPIKGLEVEIEGVRREEHPRIYKEVTIHYRIYGNVDEKKARRAIELSQEKYCSASAH 120

Query: 121 LKLSGTNVKYTLEIIRDDEPPSKLSK 146
           LKLSGTNVKYTLEIIRDDEPPSKLSK
Sbjct: 121 LKLSGTNVKYTLEIIRDDEPPSKLSK 146


>pir||H71021 hypothetical protein PH1469 - Pyrococcus horikoshii
           >gi|3257893|dbj|BAA30576.1| (AP000006) 148aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 148
           
 Score =  275 bits (695), Expect = 2e-73
 Identities = 131/145 (90%), Positives = 145/145 (99%)

Query: 2   KIMTIVKGRVRWIEGEQFIGRIEGDQCSVILGEGGISPMKLLLLSVAGCTAYDVVMILEK 61
           +I+T+VKG+VRW+EGEQFIGRIEGD+CSVILGEGGISPMKLLLLSVAGCT+YDVVMIL+K
Sbjct: 4   EIVTVVKGKVRWVEGEQFIGRIEGDKCSVILGEGGISPMKLLLLSVAGCTSYDVVMILKK 63

Query: 62  MREPIKGLEVEIEGVRREEHPRIYKEVTIHYRIYGNVDEKKARRAIELSQEKYCSASAHL 121
           MREPIKGLEVEIEGVRREEHPRIYKEVTIHY+IYGNV+EKKARRAIELSQEKYCSASAHL
Sbjct: 64  MREPIKGLEVEIEGVRREEHPRIYKEVTIHYKIYGNVNEKKARRAIELSQEKYCSASAHL 123

Query: 122 KLSGTNVKYTLEIIRDDEPPSKLSK 146
           KLSGT+VKYTLE+IRDDEPPS+L+K
Sbjct: 124 KLSGTDVKYTLEVIRDDEPPSQLNK 148


>pir||E70434 conserved hypothetical protein aq_1549 - Aquifex aeolicus
           >gi|2983923|gb|AAC07473.1| (AE000745) hypothetical
           protein [Aquifex aeolicus]
           Length = 132
           
 Score = 99.8 bits (245), Expect = 1e-20
 Identities = 47/105 (44%), Positives = 74/105 (69%), Gaps = 1/105 (0%)

Query: 30  VILGEGGISPMKLLLLSVAGCTAYDVVMILEKMREPIKGLEVEIEGVRREEHPRIYKEVT 89
           +  GE G++PM+LLL+S+  C+  DV  IL+K R+ +K +++ ++G RRE+HP+IY+E+ 
Sbjct: 25  ITAGEKGLNPMELLLVSIGSCSGVDVYHILKKKRQEVKDIKIFLKGKRREKHPKIYEEIE 84

Query: 90  IHYRIYGNVDEKKARRAIELSQEKYCSASAHLKLSGTNVKYTLEI 134
           I Y   G V+EK   +A++LS EKYCS  A +K S TN+K + E+
Sbjct: 85  IKYVAVGKVEEKALEQAVKLSTEKYCSVLAMVKPS-TNLKISWEV 128


>pir||C83564 conserved hypothetical protein PA0653 [imported] - Pseudomonas
           aeruginosa (strain PAO1) >gi|1888564|gb|AAC45224.1|
           (U89892) ORFX [Pseudomonas aeruginosa]
           >gi|9946530|gb|AAG04042.1|AE004500_8 (AE004500)
           conserved hypothetical protein [Pseudomonas aeruginosa]
           Length = 140
           
 Score = 96.0 bits (235), Expect = 2e-19
 Identities = 47/139 (33%), Positives = 82/139 (58%), Gaps = 12/139 (8%)

Query: 7   VKGRVRWIEGEQFIGRIEGDQCSVILGEG---------GISPMKLLLLSVAGCTAYDVVM 57
           +K R++W     F+G  E     V++ +G         G+ PM+++L+ + GCT +DVV 
Sbjct: 1   MKARIQWAGEAMFLG--ESGSGHVVVMDGPPDHGGRNLGVRPMEMVLIGLGGCTNFDVVS 58

Query: 58  ILEKMREPIKGLEVEIEGVRREEHPRIYKEVTIHYRIYG-NVDEKKARRAIELSQEKYCS 116
           IL+K R+P++  E  +E  R +E P+++ ++ +H+ + G  + E + +RA+ELS EKYCS
Sbjct: 59  ILKKARQPVESCEAFLEAERADEEPKVFTKIHVHFVVKGRGLKEAQVKRAVELSAEKYCS 118

Query: 117 ASAHLKLSGTNVKYTLEII 135
           AS  L   G  + +  EI+
Sbjct: 119 ASIMLGRGGVEITHDYEIV 137


>pir||H81067 conserved hypothetical protein NMB1564 [imported] - Neisseria
           meningitidis (group B strain MD58)
           >gi|7226812|gb|AAF41918.1| (AE002507) conserved
           hypothetical protein [Neisseria meningitidis MC58]
           Length = 140
           
 Score = 94.8 bits (232), Expect = 4e-19
 Identities = 49/136 (36%), Positives = 79/136 (58%), Gaps = 9/136 (6%)

Query: 12  RWIEGEQFIGRIEGDQCSVILGEG-------GISPMKLLLLSVAGCTAYDVVMILEKMRE 64
           +WI+G  F+G  EG    V+ G         G SP+++LLL VAGC++ DVVMI EK R+
Sbjct: 6   KWIDGMCFVGTTEGGHSVVMEGSAAEGKAKRGPSPLEMLLLGVAGCSSIDVVMIAEKQRQ 65

Query: 65  PIKGLEVEIEGVRREEHPRIYKEVTIHYRIYG-NVDEKKARRAIELSQEKYCSASAHLKL 123
            +      +   R ++ PR++ E+ IH++++G ++ E    RA+++S EKYCSAS  L  
Sbjct: 66  KVTDCRATVTAKRADDAPRVFTEIHIHFKVFGHDLKESAIERAVQMSAEKYCSASIMLG- 124

Query: 124 SGTNVKYTLEIIRDDE 139
               + ++ EI   D+
Sbjct: 125 KAAKITHSFEIAGADK 140


>emb|CAC12531.1| (AL445067) conserved hypothetical protein [Thermoplasma
           acidophilum]
           Length = 166
           
 Score = 94.8 bits (232), Expect = 4e-19
 Identities = 48/97 (49%), Positives = 63/97 (64%)

Query: 38  SPMKLLLLSVAGCTAYDVVMILEKMREPIKGLEVEIEGVRREEHPRIYKEVTIHYRIYGN 97
           +P +LLLL++  CT+ DV+ IL+KMR+       EI G +R+EHPRI K   I Y   GN
Sbjct: 50  APTELLLLAIGSCTSDDVLSILKKMRQEFTSYRCEISGEKRDEHPRILKYAHIKYIFEGN 109

Query: 98  VDEKKARRAIELSQEKYCSASAHLKLSGTNVKYTLEI 134
           VD  KAR+AI LS +KYCS S  ++  G  V Y+LEI
Sbjct: 110 VDADKARKAIHLSLKKYCSVSITVERGGVPVLYSLEI 146


>sp|P24246|YHFA_ECOLI HYPOTHETICAL 14.5 KD PROTEIN IN PRKB-CRP INTERGENIC REGION (F134)
           >gi|7430244|pir||G65129 hypothetical protein b3356 -
           Escherichia coli (strain K-12) >gi|606290|gb|AAA58153.1|
           (U18997) ORF_f134 [Escherichia coli]
           >gi|1789755|gb|AAC76381.1| (AE000411) orf, hypothetical
           protein [Escherichia coli K12]
           Length = 134
           
 Score = 90.9 bits (222), Expect = 6e-18
 Identities = 45/133 (33%), Positives = 81/133 (60%), Gaps = 5/133 (3%)

Query: 7   VKGRVRWIEGEQFIGRIEGDQCSVILGEGGI---SPMKLLLLSVAGCTAYDVVMILEKMR 63
           ++ RV+W+EG  F+G        ++ G  G    SPM+++L++  GC+A DVV IL+K R
Sbjct: 1   MQARVKWVEGLTFLGESASGHQILMDGNSGDKAPSPMEMVLMAAGGCSAIDVVSILQKGR 60

Query: 64  EPIKGLEVEIEGVRREEHPRIYKEVTIHYRIYG-NVDEKKARRAIELSQEKYCSASAHLK 122
           + +   EV++   RREE PR++  + +H+ + G ++ +    RA++LS EKYCS +  L+
Sbjct: 61  QDVVDCEVKLTSERREEAPRLFTHINLHFIVTGRDLKDAAVARAVDLSAEKYCSVALMLE 120

Query: 123 LSGTNVKYTLEII 135
               N+ ++ E++
Sbjct: 121 -KAVNITHSYEVV 132


>emb|CAA61607.1| (X89443) ORF2 [Erwinia chrysanthemi]
           Length = 135
           
 Score = 89.3 bits (218), Expect = 2e-17
 Identities = 48/136 (35%), Positives = 81/136 (59%), Gaps = 5/136 (3%)

Query: 7   VKGRVRWIEGEQFIGRIEGDQCSVILGEGGI---SPMKLLLLSVAGCTAYDVVMILEKMR 63
           ++ RV+W+EG  F+G        ++ G  G    SPM+++L++  GC+A DVV IL+K R
Sbjct: 1   MQARVKWVEGLTFLGESASGHQLLMDGNAGDKAPSPMEMVLMAAGGCSAIDVVSILQKGR 60

Query: 64  EPIKGLEVEIEGVRREEHPRIYKEVTIHYRIYG-NVDEKKARRAIELSQEKYCSASAHLK 122
             +   EV +   RREE PR++  + +H+ + G  +++K   RA+ LS EKYCS +  L+
Sbjct: 61  YDVADCEVRLTSERREEAPRLFTAINLHFIVTGKGLNDKAVERAVSLSAEKYCSVALMLE 120

Query: 123 LSGTNVKYTLEIIRDD 138
            + T + ++ E+I  D
Sbjct: 121 KAVT-ITHSHEVIALD 135


>pir||S19719 14K hypothetical protein (crp reion) - Escherichia coli
           >gi|48975|emb|CAA43921.1| (X61919) no known function
           [Escherichia coli]
           Length = 134
           
 Score = 85.8 bits (209), Expect = 2e-16
 Identities = 43/133 (32%), Positives = 79/133 (59%), Gaps = 5/133 (3%)

Query: 7   VKGRVRWIEGEQFIGRIEGDQCSVILGEGGI---SPMKLLLLSVAGCTAYDVVMILEKMR 63
           ++ RV+W+EG  F+G        ++ G  G    SPM+++L++  GC+A DVV IL+K R
Sbjct: 1   MQARVKWVEGLTFLGESASGHQILMDGNSGDKAPSPMEMVLMAAGGCSAIDVVSILQKGR 60

Query: 64  EPIKGLEVEIEGVRREEHPRIYKEVTIHYRIYG-NVDEKKARRAIELSQEKYCSASAHLK 122
           + +   EV++   RRE   R++  + +H+ + G ++ +    RA++LS EKYCS +  L+
Sbjct: 61  QDVVDCEVKLTSERREADTRLFTHINLHFIVTGRDLKDAAVARAVDLSAEKYCSVALMLE 120

Query: 123 LSGTNVKYTLEII 135
               N+ ++ E++
Sbjct: 121 -KAVNITHSYEVV 132


>pir||A81800 hypothetical protein NMA1753 [imported] - Neisseria meningitidis
           (group A strain Z2491) >gi|7380395|emb|CAB84981.1|
           (AL162757) hypothetical protein [Neisseria meningitidis
           Z2491]
           Length = 116
           
 Score = 83.1 bits (202), Expect = 1e-15
 Identities = 40/105 (38%), Positives = 66/105 (62%), Gaps = 2/105 (1%)

Query: 36  GISPMKLLLLSVAGCTAYDVVMILEKMREPIKGLEVEIEGVRREEHPRIYKEVTIHYRIY 95
           G SP+++LLL VAGC++ DVVMI EK R+ +      +   R ++ PR++ E+ IH++++
Sbjct: 13  GPSPLEMLLLGVAGCSSIDVVMIAEKQRQKVTDCRATVTAKRADDAPRVFTEIHIHFKVF 72

Query: 96  G-NVDEKKARRAIELSQEKYCSASAHLKLSGTNVKYTLEIIRDDE 139
           G ++ E    RA+++S EKYCSAS  L      + ++ EI   D+
Sbjct: 73  GHDLKESAIERAVQMSAEKYCSASIMLG-KAAKITHSFEIAGADK 116


>pir||H72316 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
           >gi|4981456|gb|AAD36000.1|AE001756_3 (AE001756)
           conserved hypothetical protein [Thermotoga maritima]
           Length = 138
           
 Score = 81.5 bits (198), Expect = 4e-15
 Identities = 46/104 (44%), Positives = 65/104 (62%), Gaps = 7/104 (6%)

Query: 39  PMKLLLLSVAGCTAYDVVMILEKMR--EPIKGLEVEIEGVRREEHPRIYKEVTIHY--RI 94
           P++L+L  + GCT  DVV IL KM+  + +K   +EIE  R EEHPRI+ +V + Y  + 
Sbjct: 38  PLELVLTGLMGCTGMDVVSILRKMKVIDQMKDFRIEIEYERTEEHPRIFTKVHLKYIFKF 97

Query: 95  YGNVDEKKARRAIELSQEKYCSASAHLKLSGTNVKYTLEIIRDD 138
            G   + K  +A++LSQEKYCS SA LK S    K T EI+ ++
Sbjct: 98  DGEPPKDKVEKAVQLSQEKYCSVSAILKCSS---KVTYEIVYEN 138


>pir||H75426 conserved hypothetical protein - Deinococcus radiodurans  (strain
           R1) >gi|6458917|gb|AAF10749.1|AE001967_2 (AE001967)
           conserved hypothetical protein [Deinococcus radiodurans]
           Length = 140
           
 Score = 76.5 bits (185), Expect = 1e-13
 Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 4/115 (3%)

Query: 11  VRWIEGEQFIGRIEGDQCSVILGEG---GISPMKLLLLSVAGCTAYDVVMILEKMREPIK 67
           V W+  ++++G  E     +I       G+SPM+ LL ++A CTAYDVV I++K R P+ 
Sbjct: 9   VTWLGEQRYLGVSESGHQLLIDNSPVKVGVSPMEALLGALATCTAYDVVEIMKKRRTPLA 68

Query: 68  GLEVEIEGVRREEHPRIYKEVTIHYRIYG-NVDEKKARRAIELSQEKYCSASAHL 121
              +E+EG R +  P+ Y  +T+ +   G  V  +   +A  LS EKYCS +A L
Sbjct: 69  SYRIEVEGERADTDPKRYTRITVRHIAAGEGVTAEALSKAAHLSHEKYCSVAASL 123


>pir||G82411 conserved hypothetical protein VCA0838 [imported] - Vibrio cholerae
           (group O1 strain N16961) >gi|9658267|gb|AAF96736.1|
           (AE004411) conserved hypothetical protein [Vibrio
           cholerae]
           Length = 134
           
 Score = 73.4 bits (177), Expect = 1e-12
 Identities = 41/132 (31%), Positives = 74/132 (56%), Gaps = 5/132 (3%)

Query: 7   VKGRVRWIEGEQFIGRIEGDQCSVILGEGGIS---PMKLLLLSVAGCTAYDVVMILEKMR 63
           ++ +V+W+E  +FIG        V+ G GG S   PM+++L++  GC++ DVV  ++K  
Sbjct: 1   MQAQVKWVEDFRFIGLSNSGHSIVMDGNGGASAPSPMEMVLMAAGGCSSVDVVDGMKKAG 60

Query: 64  EPIKGLEVEIEGVRREEHPRIYKEVTIHYRIYG-NVDEKKARRAIELSQEKYCSASAHLK 122
           + I G   ++   RR+  P+++ +V IH+ + G ++D++   R    S EKYCS    L 
Sbjct: 61  QKIHGCTAQLSAERRDTAPKLFTQVNIHFVVSGEDLDQEIVARVTADSLEKYCSVCLMLG 120

Query: 123 LSGTNVKYTLEI 134
             G  + ++ EI
Sbjct: 121 -KGVEMTHSWEI 131


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.138    0.393 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52829977
Number of Sequences: 2977
Number of extensions: 1934192
Number of successful extensions: 4885
Number of sequences better than 1.0e-10: 13
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4867
Number of HSP's gapped (non-prelim): 13
length of query: 146
length of database: 189,106,746
effective HSP length: 54
effective length of query: 92
effective length of database: 156,788,448
effective search space: 14424537216
effective search space used: 14424537216
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)