BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1905 (PAB1905) DE:Hypothetical protein
(146 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75111 hypothetical protein PAB1905 - Pyrococcus abyssi (st... 294 3e-79
pir||H71021 hypothetical protein PH1469 - Pyrococcus horikoshii ... 275 2e-73
pir||E70434 conserved hypothetical protein aq_1549 - Aquifex aeo... 100 1e-20
pir||C83564 conserved hypothetical protein PA0653 [imported] - P... 96 2e-19
pir||H81067 conserved hypothetical protein NMB1564 [imported] - ... 95 4e-19
emb|CAC12531.1| (AL445067) conserved hypothetical protein [Therm... 95 4e-19
sp|P24246|YHFA_ECOLI HYPOTHETICAL 14.5 KD PROTEIN IN PRKB-CRP IN... 91 6e-18
emb|CAA61607.1| (X89443) ORF2 [Erwinia chrysanthemi] 89 2e-17
pir||S19719 14K hypothetical protein (crp reion) - Escherichia c... 86 2e-16
pir||A81800 hypothetical protein NMA1753 [imported] - Neisseria ... 83 1e-15
pir||H72316 conserved hypothetical protein - Thermotoga maritima... 82 4e-15
pir||H75426 conserved hypothetical protein - Deinococcus radiodu... 76 1e-13
pir||G82411 conserved hypothetical protein VCA0838 [imported] - ... 73 1e-12
>pir||H75111 hypothetical protein PAB1905 - Pyrococcus abyssi (strain Orsay)
>gi|5458120|emb|CAB49609.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 146
Score = 294 bits (745), Expect = 3e-79
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MKIMTIVKGRVRWIEGEQFIGRIEGDQCSVILGEGGISPMKLLLLSVAGCTAYDVVMILE 60
MKIMTIVKGRVRWIEGEQFIGRIEGDQCSVILGEGGISPMKLLLLSVAGCTAYDVVMILE
Sbjct: 1 MKIMTIVKGRVRWIEGEQFIGRIEGDQCSVILGEGGISPMKLLLLSVAGCTAYDVVMILE 60
Query: 61 KMREPIKGLEVEIEGVRREEHPRIYKEVTIHYRIYGNVDEKKARRAIELSQEKYCSASAH 120
KMREPIKGLEVEIEGVRREEHPRIYKEVTIHYRIYGNVDEKKARRAIELSQEKYCSASAH
Sbjct: 61 KMREPIKGLEVEIEGVRREEHPRIYKEVTIHYRIYGNVDEKKARRAIELSQEKYCSASAH 120
Query: 121 LKLSGTNVKYTLEIIRDDEPPSKLSK 146
LKLSGTNVKYTLEIIRDDEPPSKLSK
Sbjct: 121 LKLSGTNVKYTLEIIRDDEPPSKLSK 146
>pir||H71021 hypothetical protein PH1469 - Pyrococcus horikoshii
>gi|3257893|dbj|BAA30576.1| (AP000006) 148aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 148
Score = 275 bits (695), Expect = 2e-73
Identities = 131/145 (90%), Positives = 145/145 (99%)
Query: 2 KIMTIVKGRVRWIEGEQFIGRIEGDQCSVILGEGGISPMKLLLLSVAGCTAYDVVMILEK 61
+I+T+VKG+VRW+EGEQFIGRIEGD+CSVILGEGGISPMKLLLLSVAGCT+YDVVMIL+K
Sbjct: 4 EIVTVVKGKVRWVEGEQFIGRIEGDKCSVILGEGGISPMKLLLLSVAGCTSYDVVMILKK 63
Query: 62 MREPIKGLEVEIEGVRREEHPRIYKEVTIHYRIYGNVDEKKARRAIELSQEKYCSASAHL 121
MREPIKGLEVEIEGVRREEHPRIYKEVTIHY+IYGNV+EKKARRAIELSQEKYCSASAHL
Sbjct: 64 MREPIKGLEVEIEGVRREEHPRIYKEVTIHYKIYGNVNEKKARRAIELSQEKYCSASAHL 123
Query: 122 KLSGTNVKYTLEIIRDDEPPSKLSK 146
KLSGT+VKYTLE+IRDDEPPS+L+K
Sbjct: 124 KLSGTDVKYTLEVIRDDEPPSQLNK 148
>pir||E70434 conserved hypothetical protein aq_1549 - Aquifex aeolicus
>gi|2983923|gb|AAC07473.1| (AE000745) hypothetical
protein [Aquifex aeolicus]
Length = 132
Score = 99.8 bits (245), Expect = 1e-20
Identities = 47/105 (44%), Positives = 74/105 (69%), Gaps = 1/105 (0%)
Query: 30 VILGEGGISPMKLLLLSVAGCTAYDVVMILEKMREPIKGLEVEIEGVRREEHPRIYKEVT 89
+ GE G++PM+LLL+S+ C+ DV IL+K R+ +K +++ ++G RRE+HP+IY+E+
Sbjct: 25 ITAGEKGLNPMELLLVSIGSCSGVDVYHILKKKRQEVKDIKIFLKGKRREKHPKIYEEIE 84
Query: 90 IHYRIYGNVDEKKARRAIELSQEKYCSASAHLKLSGTNVKYTLEI 134
I Y G V+EK +A++LS EKYCS A +K S TN+K + E+
Sbjct: 85 IKYVAVGKVEEKALEQAVKLSTEKYCSVLAMVKPS-TNLKISWEV 128
>pir||C83564 conserved hypothetical protein PA0653 [imported] - Pseudomonas
aeruginosa (strain PAO1) >gi|1888564|gb|AAC45224.1|
(U89892) ORFX [Pseudomonas aeruginosa]
>gi|9946530|gb|AAG04042.1|AE004500_8 (AE004500)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 140
Score = 96.0 bits (235), Expect = 2e-19
Identities = 47/139 (33%), Positives = 82/139 (58%), Gaps = 12/139 (8%)
Query: 7 VKGRVRWIEGEQFIGRIEGDQCSVILGEG---------GISPMKLLLLSVAGCTAYDVVM 57
+K R++W F+G E V++ +G G+ PM+++L+ + GCT +DVV
Sbjct: 1 MKARIQWAGEAMFLG--ESGSGHVVVMDGPPDHGGRNLGVRPMEMVLIGLGGCTNFDVVS 58
Query: 58 ILEKMREPIKGLEVEIEGVRREEHPRIYKEVTIHYRIYG-NVDEKKARRAIELSQEKYCS 116
IL+K R+P++ E +E R +E P+++ ++ +H+ + G + E + +RA+ELS EKYCS
Sbjct: 59 ILKKARQPVESCEAFLEAERADEEPKVFTKIHVHFVVKGRGLKEAQVKRAVELSAEKYCS 118
Query: 117 ASAHLKLSGTNVKYTLEII 135
AS L G + + EI+
Sbjct: 119 ASIMLGRGGVEITHDYEIV 137
>pir||H81067 conserved hypothetical protein NMB1564 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7226812|gb|AAF41918.1| (AE002507) conserved
hypothetical protein [Neisseria meningitidis MC58]
Length = 140
Score = 94.8 bits (232), Expect = 4e-19
Identities = 49/136 (36%), Positives = 79/136 (58%), Gaps = 9/136 (6%)
Query: 12 RWIEGEQFIGRIEGDQCSVILGEG-------GISPMKLLLLSVAGCTAYDVVMILEKMRE 64
+WI+G F+G EG V+ G G SP+++LLL VAGC++ DVVMI EK R+
Sbjct: 6 KWIDGMCFVGTTEGGHSVVMEGSAAEGKAKRGPSPLEMLLLGVAGCSSIDVVMIAEKQRQ 65
Query: 65 PIKGLEVEIEGVRREEHPRIYKEVTIHYRIYG-NVDEKKARRAIELSQEKYCSASAHLKL 123
+ + R ++ PR++ E+ IH++++G ++ E RA+++S EKYCSAS L
Sbjct: 66 KVTDCRATVTAKRADDAPRVFTEIHIHFKVFGHDLKESAIERAVQMSAEKYCSASIMLG- 124
Query: 124 SGTNVKYTLEIIRDDE 139
+ ++ EI D+
Sbjct: 125 KAAKITHSFEIAGADK 140
>emb|CAC12531.1| (AL445067) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 166
Score = 94.8 bits (232), Expect = 4e-19
Identities = 48/97 (49%), Positives = 63/97 (64%)
Query: 38 SPMKLLLLSVAGCTAYDVVMILEKMREPIKGLEVEIEGVRREEHPRIYKEVTIHYRIYGN 97
+P +LLLL++ CT+ DV+ IL+KMR+ EI G +R+EHPRI K I Y GN
Sbjct: 50 APTELLLLAIGSCTSDDVLSILKKMRQEFTSYRCEISGEKRDEHPRILKYAHIKYIFEGN 109
Query: 98 VDEKKARRAIELSQEKYCSASAHLKLSGTNVKYTLEI 134
VD KAR+AI LS +KYCS S ++ G V Y+LEI
Sbjct: 110 VDADKARKAIHLSLKKYCSVSITVERGGVPVLYSLEI 146
>sp|P24246|YHFA_ECOLI HYPOTHETICAL 14.5 KD PROTEIN IN PRKB-CRP INTERGENIC REGION (F134)
>gi|7430244|pir||G65129 hypothetical protein b3356 -
Escherichia coli (strain K-12) >gi|606290|gb|AAA58153.1|
(U18997) ORF_f134 [Escherichia coli]
>gi|1789755|gb|AAC76381.1| (AE000411) orf, hypothetical
protein [Escherichia coli K12]
Length = 134
Score = 90.9 bits (222), Expect = 6e-18
Identities = 45/133 (33%), Positives = 81/133 (60%), Gaps = 5/133 (3%)
Query: 7 VKGRVRWIEGEQFIGRIEGDQCSVILGEGGI---SPMKLLLLSVAGCTAYDVVMILEKMR 63
++ RV+W+EG F+G ++ G G SPM+++L++ GC+A DVV IL+K R
Sbjct: 1 MQARVKWVEGLTFLGESASGHQILMDGNSGDKAPSPMEMVLMAAGGCSAIDVVSILQKGR 60
Query: 64 EPIKGLEVEIEGVRREEHPRIYKEVTIHYRIYG-NVDEKKARRAIELSQEKYCSASAHLK 122
+ + EV++ RREE PR++ + +H+ + G ++ + RA++LS EKYCS + L+
Sbjct: 61 QDVVDCEVKLTSERREEAPRLFTHINLHFIVTGRDLKDAAVARAVDLSAEKYCSVALMLE 120
Query: 123 LSGTNVKYTLEII 135
N+ ++ E++
Sbjct: 121 -KAVNITHSYEVV 132
>emb|CAA61607.1| (X89443) ORF2 [Erwinia chrysanthemi]
Length = 135
Score = 89.3 bits (218), Expect = 2e-17
Identities = 48/136 (35%), Positives = 81/136 (59%), Gaps = 5/136 (3%)
Query: 7 VKGRVRWIEGEQFIGRIEGDQCSVILGEGGI---SPMKLLLLSVAGCTAYDVVMILEKMR 63
++ RV+W+EG F+G ++ G G SPM+++L++ GC+A DVV IL+K R
Sbjct: 1 MQARVKWVEGLTFLGESASGHQLLMDGNAGDKAPSPMEMVLMAAGGCSAIDVVSILQKGR 60
Query: 64 EPIKGLEVEIEGVRREEHPRIYKEVTIHYRIYG-NVDEKKARRAIELSQEKYCSASAHLK 122
+ EV + RREE PR++ + +H+ + G +++K RA+ LS EKYCS + L+
Sbjct: 61 YDVADCEVRLTSERREEAPRLFTAINLHFIVTGKGLNDKAVERAVSLSAEKYCSVALMLE 120
Query: 123 LSGTNVKYTLEIIRDD 138
+ T + ++ E+I D
Sbjct: 121 KAVT-ITHSHEVIALD 135
>pir||S19719 14K hypothetical protein (crp reion) - Escherichia coli
>gi|48975|emb|CAA43921.1| (X61919) no known function
[Escherichia coli]
Length = 134
Score = 85.8 bits (209), Expect = 2e-16
Identities = 43/133 (32%), Positives = 79/133 (59%), Gaps = 5/133 (3%)
Query: 7 VKGRVRWIEGEQFIGRIEGDQCSVILGEGGI---SPMKLLLLSVAGCTAYDVVMILEKMR 63
++ RV+W+EG F+G ++ G G SPM+++L++ GC+A DVV IL+K R
Sbjct: 1 MQARVKWVEGLTFLGESASGHQILMDGNSGDKAPSPMEMVLMAAGGCSAIDVVSILQKGR 60
Query: 64 EPIKGLEVEIEGVRREEHPRIYKEVTIHYRIYG-NVDEKKARRAIELSQEKYCSASAHLK 122
+ + EV++ RRE R++ + +H+ + G ++ + RA++LS EKYCS + L+
Sbjct: 61 QDVVDCEVKLTSERREADTRLFTHINLHFIVTGRDLKDAAVARAVDLSAEKYCSVALMLE 120
Query: 123 LSGTNVKYTLEII 135
N+ ++ E++
Sbjct: 121 -KAVNITHSYEVV 132
>pir||A81800 hypothetical protein NMA1753 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7380395|emb|CAB84981.1|
(AL162757) hypothetical protein [Neisseria meningitidis
Z2491]
Length = 116
Score = 83.1 bits (202), Expect = 1e-15
Identities = 40/105 (38%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Query: 36 GISPMKLLLLSVAGCTAYDVVMILEKMREPIKGLEVEIEGVRREEHPRIYKEVTIHYRIY 95
G SP+++LLL VAGC++ DVVMI EK R+ + + R ++ PR++ E+ IH++++
Sbjct: 13 GPSPLEMLLLGVAGCSSIDVVMIAEKQRQKVTDCRATVTAKRADDAPRVFTEIHIHFKVF 72
Query: 96 G-NVDEKKARRAIELSQEKYCSASAHLKLSGTNVKYTLEIIRDDE 139
G ++ E RA+++S EKYCSAS L + ++ EI D+
Sbjct: 73 GHDLKESAIERAVQMSAEKYCSASIMLG-KAAKITHSFEIAGADK 116
>pir||H72316 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981456|gb|AAD36000.1|AE001756_3 (AE001756)
conserved hypothetical protein [Thermotoga maritima]
Length = 138
Score = 81.5 bits (198), Expect = 4e-15
Identities = 46/104 (44%), Positives = 65/104 (62%), Gaps = 7/104 (6%)
Query: 39 PMKLLLLSVAGCTAYDVVMILEKMR--EPIKGLEVEIEGVRREEHPRIYKEVTIHY--RI 94
P++L+L + GCT DVV IL KM+ + +K +EIE R EEHPRI+ +V + Y +
Sbjct: 38 PLELVLTGLMGCTGMDVVSILRKMKVIDQMKDFRIEIEYERTEEHPRIFTKVHLKYIFKF 97
Query: 95 YGNVDEKKARRAIELSQEKYCSASAHLKLSGTNVKYTLEIIRDD 138
G + K +A++LSQEKYCS SA LK S K T EI+ ++
Sbjct: 98 DGEPPKDKVEKAVQLSQEKYCSVSAILKCSS---KVTYEIVYEN 138
>pir||H75426 conserved hypothetical protein - Deinococcus radiodurans (strain
R1) >gi|6458917|gb|AAF10749.1|AE001967_2 (AE001967)
conserved hypothetical protein [Deinococcus radiodurans]
Length = 140
Score = 76.5 bits (185), Expect = 1e-13
Identities = 42/115 (36%), Positives = 65/115 (56%), Gaps = 4/115 (3%)
Query: 11 VRWIEGEQFIGRIEGDQCSVILGEG---GISPMKLLLLSVAGCTAYDVVMILEKMREPIK 67
V W+ ++++G E +I G+SPM+ LL ++A CTAYDVV I++K R P+
Sbjct: 9 VTWLGEQRYLGVSESGHQLLIDNSPVKVGVSPMEALLGALATCTAYDVVEIMKKRRTPLA 68
Query: 68 GLEVEIEGVRREEHPRIYKEVTIHYRIYG-NVDEKKARRAIELSQEKYCSASAHL 121
+E+EG R + P+ Y +T+ + G V + +A LS EKYCS +A L
Sbjct: 69 SYRIEVEGERADTDPKRYTRITVRHIAAGEGVTAEALSKAAHLSHEKYCSVAASL 123
>pir||G82411 conserved hypothetical protein VCA0838 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9658267|gb|AAF96736.1|
(AE004411) conserved hypothetical protein [Vibrio
cholerae]
Length = 134
Score = 73.4 bits (177), Expect = 1e-12
Identities = 41/132 (31%), Positives = 74/132 (56%), Gaps = 5/132 (3%)
Query: 7 VKGRVRWIEGEQFIGRIEGDQCSVILGEGGIS---PMKLLLLSVAGCTAYDVVMILEKMR 63
++ +V+W+E +FIG V+ G GG S PM+++L++ GC++ DVV ++K
Sbjct: 1 MQAQVKWVEDFRFIGLSNSGHSIVMDGNGGASAPSPMEMVLMAAGGCSSVDVVDGMKKAG 60
Query: 64 EPIKGLEVEIEGVRREEHPRIYKEVTIHYRIYG-NVDEKKARRAIELSQEKYCSASAHLK 122
+ I G ++ RR+ P+++ +V IH+ + G ++D++ R S EKYCS L
Sbjct: 61 QKIHGCTAQLSAERRDTAPKLFTQVNIHFVVSGEDLDQEIVARVTADSLEKYCSVCLMLG 120
Query: 123 LSGTNVKYTLEI 134
G + ++ EI
Sbjct: 121 -KGVEMTHSWEI 131
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.138 0.393
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52829977
Number of Sequences: 2977
Number of extensions: 1934192
Number of successful extensions: 4885
Number of sequences better than 1.0e-10: 13
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4867
Number of HSP's gapped (non-prelim): 13
length of query: 146
length of database: 189,106,746
effective HSP length: 54
effective length of query: 92
effective length of database: 156,788,448
effective search space: 14424537216
effective search space used: 14424537216
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)