BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1906 (PAB1906) DE:Hypothetical protein
(260 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G75111 hypothetical protein PAB1906 - Pyrococcus abyssi (st... 510 e-144
pir||A71022 hypothetical protein PH1470 - Pyrococcus horikoshii ... 457 e-128
gb|AAK42545.1| Conserved hypothetical protein [Sulfolobus solfat... 285 4e-76
sp|Q57662|Y209_METJA HYPOTHETICAL PROTEIN MJ0209 >gi|2128180|pir... 275 3e-73
pir||G69156 conserved hypothetical protein MTH435 - Methanobacte... 263 2e-69
gb|AAG18847.1| (AE004988) Vng0250c [Halobacterium sp. NRC-1] 248 6e-65
pir||E72582 hypothetical protein APE1937 - Aeropyrum pernix (str... 213 2e-54
gi|11498532 conserved hypothetical protein [Archaeoglobus fulgid... 204 8e-52
>pir||G75111 hypothetical protein PAB1906 - Pyrococcus abyssi (strain Orsay)
>gi|5458119|emb|CAB49608.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 260
Score = 510 bits (1299), Expect = e-144
Identities = 260/260 (100%), Positives = 260/260 (100%)
Query: 1 MVKIPKSHPRYWSLLYREKIIEGMERGITAKAGLIAHGRGEAFDYLIGEKTIKPAEEAMR 60
MVKIPKSHPRYWSLLYREKIIEGMERGITAKAGLIAHGRGEAFDYLIGEKTIKPAEEAMR
Sbjct: 1 MVKIPKSHPRYWSLLYREKIIEGMERGITAKAGLIAHGRGEAFDYLIGEKTIKPAEEAMR 60
Query: 61 AAVAKLLLAKHPVLSVNGNVAALVPRETVELAKVLRAKLEVNLFYRTEERVKKIAEVLRE 120
AAVAKLLLAKHPVLSVNGNVAALVPRETVELAKVLRAKLEVNLFYRTEERVKKIAEVLRE
Sbjct: 61 AAVAKLLLAKHPVLSVNGNVAALVPRETVELAKVLRAKLEVNLFYRTEERVKKIAEVLRE 120
Query: 121 AGAEEVLGINPTKRIPGLESERGKVDEEGIWKADVVLVPLEDGDRTEALVRMGKFVITVD 180
AGAEEVLGINPTKRIPGLESERGKVDEEGIWKADVVLVPLEDGDRTEALVRMGKFVITVD
Sbjct: 121 AGAEEVLGINPTKRIPGLESERGKVDEEGIWKADVVLVPLEDGDRTEALVRMGKFVITVD 180
Query: 181 LNPLSRSARMADITIVDNIIRAYPRMIELAKEMRNYPREKLEEIVKNYDNSRILSEVLIH 240
LNPLSRSARMADITIVDNIIRAYPRMIELAKEMRNYPREKLEEIVKNYDNSRILSEVLIH
Sbjct: 181 LNPLSRSARMADITIVDNIIRAYPRMIELAKEMRNYPREKLEEIVKNYDNSRILSEVLIH 240
Query: 241 IKDRLTKLAEEGIWRRERLE 260
IKDRLTKLAEEGIWRRERLE
Sbjct: 241 IKDRLTKLAEEGIWRRERLE 260
>pir||A71022 hypothetical protein PH1470 - Pyrococcus horikoshii
>gi|3257894|dbj|BAA30577.1| (AP000006) 280aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 280
Score = 457 bits (1163), Expect = e-128
Identities = 226/259 (87%), Positives = 248/259 (95%)
Query: 1 MVKIPKSHPRYWSLLYREKIIEGMERGITAKAGLIAHGRGEAFDYLIGEKTIKPAEEAMR 60
MVKIPKSHPRYWSLLYREKII GME GITAKAGLIAHGRGEAFDYLIGE+TI PAEEAM+
Sbjct: 22 MVKIPKSHPRYWSLLYREKIIRGMEEGITAKAGLIAHGRGEAFDYLIGERTIPPAEEAMK 81
Query: 61 AAVAKLLLAKHPVLSVNGNVAALVPRETVELAKVLRAKLEVNLFYRTEERVKKIAEVLRE 120
AVAKLLLA HPV+SVNGNVAALVPRETVELAKV RAKLEVNLFYRTEERVKKIAEVL++
Sbjct: 82 VAVAKLLLANHPVISVNGNVAALVPRETVELAKVTRAKLEVNLFYRTEERVKKIAEVLKK 141
Query: 121 AGAEEVLGINPTKRIPGLESERGKVDEEGIWKADVVLVPLEDGDRTEALVRMGKFVITVD 180
GA+EVLG+NPTKRIPGLESERGKV+E+GIWKADVVLVPLEDGDRTEALVRMGKFVITVD
Sbjct: 142 TGAKEVLGLNPTKRIPGLESERGKVEEDGIWKADVVLVPLEDGDRTEALVRMGKFVITVD 201
Query: 181 LNPLSRSARMADITIVDNIIRAYPRMIELAKEMRNYPREKLEEIVKNYDNSRILSEVLIH 240
LNPLSRSARMA++TIVDNIIRAYPRMIELAKEMR+Y RE+LEEIV NYDN++ILSEVL+H
Sbjct: 202 LNPLSRSARMANVTIVDNIIRAYPRMIELAKEMRDYSREELEEIVNNYDNNKILSEVLLH 261
Query: 241 IKDRLTKLAEEGIWRRERL 259
I+ RL +LA+EGIWR+E++
Sbjct: 262 IRRRLEELAKEGIWRKEKI 280
>gb|AAK42545.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 266
Score = 285 bits (721), Expect = 4e-76
Identities = 152/248 (61%), Positives = 191/248 (76%), Gaps = 2/248 (0%)
Query: 4 IPKSHPRYWSLLYREKIIEGMERGITAKAGLIAHGRGEAFDYLIGEKTIKPAEEAMRAAV 63
IP++HPR SLL REK+IE ME+ I GLIAHGRGE FDYLIGEKT AE+A+ AA
Sbjct: 16 IPENHPRRESLLIREKLIEAMEKSILVPQGLIAHGRGECFDYLIGEKTQDFAEKAIEAAA 75
Query: 64 AKLLLAKHPVLSVNGNVAALVPRETVELAKVLRAKLEVNLFYRTEERVKKIAEVLREAGA 123
A LLLAK P +SVNGN+AALVP + LA+ AKLE+NLFYR E R K IAEVL + GA
Sbjct: 76 ATLLLAKTPTISVNGNMAALVPEGLIRLAEESNAKLEINLFYRDERREKAIAEVLYKGGA 135
Query: 124 EEVLGI--NPTKRIPGLESERGKVDEEGIWKADVVLVPLEDGDRTEALVRMGKFVITVDL 181
+EVLG+ + ++ IP L S+R +V +GI+KADVVL+ LEDGDRTEALV+MGK VI +D+
Sbjct: 136 KEVLGVGEDASEVIPELFSQRRRVSPKGIYKADVVLLGLEDGDRTEALVKMGKKVIAIDI 195
Query: 182 NPLSRSARMADITIVDNIIRAYPRMIELAKEMRNYPREKLEEIVKNYDNSRILSEVLIHI 241
NPLSR++R A ITIVDNIIRA PR++E KE+++ +E+LE+IV NYDN IL+E L I
Sbjct: 196 NPLSRTSRTATITIVDNIIRAVPRLVEKVKELKSKSKEELEQIVFNYDNKTILAESLKFI 255
Query: 242 KDRLTKLA 249
+RLT+L+
Sbjct: 256 ANRLTQLS 263
>sp|Q57662|Y209_METJA HYPOTHETICAL PROTEIN MJ0209 >gi|2128180|pir||B64326 hypothetical
protein MJ0209 - Methanococcus jannaschii
>gi|1498984|gb|AAB98192.1| (U67476) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 266
Score = 275 bits (697), Expect = 3e-73
Identities = 148/256 (57%), Positives = 188/256 (72%), Gaps = 8/256 (3%)
Query: 2 VKIPKSHPRYWSLLYREKIIEGMERGITAKAGLIAHGRGEAFDYLIGEKTIKPAEEAMRA 61
++IPK+HPRY SL+ REKIIE +++GI AKAGLIAHGRGE FDYLIGEKT A EA++A
Sbjct: 7 MQIPKTHPRYESLMKREKIIEALDKGILAKAGLIAHGRGETFDYLIGEKTAPIALEAIKA 66
Query: 62 AVAKLLLAKHPVLSVNGNVAALVPRETVELAKVLRAKLEVNLFYRTEERVKKIAEVLR-- 119
A A L+LA++PV+SVNGN AL E VELAK L K+EVNLFYRT+ER I
Sbjct: 67 AAALLILAENPVISVNGNTVALAIDEVVELAKELNGKIEVNLFYRTKERELAIKRAFEEK 126
Query: 120 -----EAGAEEVLGI-NPTKRIPGLESERGKVDEEGIWKADVVLVPLEDGDRTEALVRMG 173
E G ++LGI + K+IP L+S RGKV EEGI+ ADVVLVPLEDGDR EALV MG
Sbjct: 127 FKDDIETGKIKILGIDDANKQIPNLDSLRGKVSEEGIFTADVVLVPLEDGDRAEALVNMG 186
Query: 174 KFVITVDLNPLSRSARMADITIVDNIIRAYPRMIELAKEMRNYPREKLEEIVKNYDNSRI 233
K VI +DLNPLSR+AR + ITIVD + RA P +I+ KE +N RE+L +IV+++DN +
Sbjct: 187 KKVIAIDLNPLSRTARKSTITIVDELTRAMPLLIKYVKEFKNKDREELLKIVEDFDNKKN 246
Query: 234 LSEVLIHIKDRLTKLA 249
L +++ +I +RL L+
Sbjct: 247 LKDMIDYIAERLKNLS 262
>pir||G69156 conserved hypothetical protein MTH435 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621500|gb|AAB84941.1| (AE000827) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 248
Score = 263 bits (665), Expect = 2e-69
Identities = 134/235 (57%), Positives = 172/235 (73%)
Query: 4 IPKSHPRYWSLLYREKIIEGMERGITAKAGLIAHGRGEAFDYLIGEKTIKPAEEAMRAAV 63
I + HPRY SL+ RE I E +GI A +G+IAHGRGEAFDYL+GE+T +PA +A+RAA
Sbjct: 2 ISRDHPRYHSLIQREMITEAWRKGILADSGMIAHGRGEAFDYLLGERTTEPAAKAIRAAA 61
Query: 64 AKLLLAKHPVLSVNGNVAALVPRETVELAKVLRAKLEVNLFYRTEERVKKIAEVLREAGA 123
A LLLAK+PV+SVNGN AALVP VELA + K+E+NLF+RTE+RV+ I EVL E GA
Sbjct: 62 AALLLAKNPVISVNGNTAALVPGAVVELADAIGGKIEINLFHRTEKRVRLIEEVLLENGA 121
Query: 124 EEVLGINPTKRIPGLESERGKVDEEGIWKADVVLVPLEDGDRTEALVRMGKFVITVDLNP 183
EVLG + I ++S R +GI+ ADVVLVPLEDGDRTE L + GK VIT+DLNP
Sbjct: 122 REVLGTDKLLYIDDIKSPRATASPDGIYSADVVLVPLEDGDRTEILRKSGKTVITIDLNP 181
Query: 184 LSRSARMADITIVDNIIRAYPRMIELAKEMRNYPREKLEEIVKNYDNSRILSEVL 238
LSR++R A I+I DNI+RA P +IE +E+ + R++LE IV+ +DN + E L
Sbjct: 182 LSRTSRKASISITDNIVRAIPALIEAVRELEDLSRDELELIVEEFDNLENIRETL 236
>gb|AAG18847.1| (AE004988) Vng0250c [Halobacterium sp. NRC-1]
Length = 249
Score = 248 bits (626), Expect = 6e-65
Identities = 128/234 (54%), Positives = 164/234 (69%)
Query: 1 MVKIPKSHPRYWSLLYREKIIEGMERGITAKAGLIAHGRGEAFDYLIGEKTIKPAEEAMR 60
M +IP+ HPR+ SL+ R +I +G++ GIT++ GLIA GRGEA+DYL+GE+TI A+ A R
Sbjct: 1 MTEIPEDHPRHDSLVTRHRIEDGVDDGITSRQGLIAQGRGEAYDYLLGEETIPSADAAER 60
Query: 61 AAVAKLLLAKHPVLSVNGNVAALVPRETVELAKVLRAKLEVNLFYRTEERVKKIAEVLRE 120
AA A+LL A HPV+SVNGNVAALVP V LA A L VNLF RTEERV++IA+ LRE
Sbjct: 61 AAAAQLLTADHPVVSVNGNVAALVPDALVALAAATGADLAVNLFNRTEERVERIADHLRE 120
Query: 121 AGAEEVLGINPTKRIPGLESERGKVDEEGIWKADVVLVPLEDGDRTEALVRMGKFVITVD 180
GA VLG RIPGL+ ER VD +GI+ ADVVLVPLEDGDR AL MGK + +D
Sbjct: 121 HGASGVLGTKADARIPGLDHERATVDSDGIYDADVVLVPLEDGDRAAALAEMGKTELVID 180
Query: 181 LNPLSRSARMADITIVDNIIRAYPRMIELAKEMRNYPREKLEEIVKNYDNSRIL 234
LNPLSRSA+ A + I+DN++RA P + A+++ EE ++ +D L
Sbjct: 181 LNPLSRSAQAASVPIIDNVVRAVPNITAHARDLSEAENAAREECIQEFDREAAL 234
>pir||E72582 hypothetical protein APE1937 - Aeropyrum pernix (strain K1)
>gi|5105633|dbj|BAA80946.1| (AP000062) 237aa long
hypothetical protein [Aeropyrum pernix]
Length = 237
Score = 213 bits (536), Expect = 2e-54
Identities = 120/232 (51%), Positives = 150/232 (63%), Gaps = 3/232 (1%)
Query: 25 ERGITAKAGLIAHGRGEAFDYLIGEKTIKPAEEAMRAAVAKLLLAKHPVLSVNGNVAALV 84
E+G+ GLIAHGRGE FDYL+GEK+ A EA R A A LLL+K PV+SVNGN AAL
Sbjct: 3 EKGVVVPQGLIAHGRGECFDYLLGEKSHDFALEAERVAAAYLLLSKRPVISVNGNYAALA 62
Query: 85 PRETVELAKVL--RAKLEVNLFYRTEERVKKIAEVLREAGAEEVLGINPTK-RIPGLESE 141
E L++ L RA +EVN+FYRTEERV++I EVL AG + +L + K R+PGLES
Sbjct: 63 AGEIARLSEALGGRAVVEVNIFYRTEERVRRIHEVLASAGVKGLLPPDCEKTRVPGLESP 122
Query: 142 RGKVDEEGIWKADVVLVPLEDGDRTEALVRMGKFVITVDLNPLSRSARMADITIVDNIIR 201
RG V EGI AD VL+ +EDGDRTEALV+ GK V +DLNP SR+A+ A +TIVD +R
Sbjct: 123 RGIVCVEGIASADFVLLAIEDGDRTEALVKWGKRVAAIDLNPFSRTAQKASVTIVDEAVR 182
Query: 202 AYPRMIELAKEMRNYPREKLEEIVKNYDNSRILSEVLIHIKDRLTKLAEEGI 253
A + E+ E+L IV Y N LS I DRL+ A+ G+
Sbjct: 183 ATRNITRFVDELSGASEEELRSIVAGYSNRETLSRAFKAILDRLSSAADSGV 234
>gi|11498532 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7429651|pir||G69365 conserved hypothetical protein
AF0927 - Archaeoglobus fulgidus
>gi|2649675|gb|AAB90316.1| (AE001040) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 188
Score = 204 bits (514), Expect = 8e-52
Identities = 107/186 (57%), Positives = 140/186 (74%), Gaps = 2/186 (1%)
Query: 66 LLLAKHPVLSVNGNVAALVPRETVELAKVLRAKLEVNLFYRTEERVKKIAEVLREAGAEE 125
+LLAKHPV+SVNGN A LVP ET +LA+++ AK+E+N+F+ + ERV+KI L + G E
Sbjct: 1 MLLAKHPVISVNGNTAVLVPEETRKLAELVNAKVEINVFHHSPERVEKIKRYLEKHGIEV 60
Query: 126 VLGINPTKRIPGLESERGKVDEEGIWKADVVLVPLEDGDRTEALVRMGKFVITVDLNPLS 185
+ + + GLES R VD GI ADVVLVPLEDGDR E L R GK VI +DLNPLS
Sbjct: 61 LAAGDAV--LEGLESARRIVDSRGILIADVVLVPLEDGDRCEILKRHGKKVIAIDLNPLS 118
Query: 186 RSARMADITIVDNIIRAYPRMIELAKEMRNYPREKLEEIVKNYDNSRILSEVLIHIKDRL 245
R+ARMADITIVDNIIRA+P+M+E+A+EMR + RE+L+E+V+NYDNS++L+E + I L
Sbjct: 119 RTARMADITIVDNIIRAFPKMVEMAEEMRKWERERLKEVVENYDNSKVLAEAVEGIIQYL 178
Query: 246 TKLAEE 251
K+ E
Sbjct: 179 QKVKGE 184
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.137 0.380
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87916609
Number of Sequences: 2977
Number of extensions: 3436453
Number of successful extensions: 10988
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10975
Number of HSP's gapped (non-prelim): 8
length of query: 260
length of database: 189,106,746
effective HSP length: 58
effective length of query: 202
effective length of database: 154,394,500
effective search space: 31187689000
effective search space used: 31187689000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)