BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1907 (PAB1907) DE:GLYCEROL 1-PHOSPHATE DEHYDROGENASE.
(346 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75111 glycerol 1-phosphate dehydrogenase. PAB1907 - Pyroco... 674 0.0
pir||F71022 probable glycerol 1-phaphate dehydrogenase - Pyrococ... 611 e-174
pir||B69181 conserved hypothetical protein MTH610 - Methanobacte... 358 4e-98
gb|AAK41055.1| Glycerol-1-phosphate dehydrogenase (gldA) [Sulfol... 334 1e-90
emb|CAB57543.1| (Y18930) glycerol 1-phosphate dehydrogenase [Sul... 334 1e-90
pir||H72748 probable glycerol dehydrogenase APE0519 - Aeropyrum ... 322 4e-87
emb|CAC12283.1| (AL445066) glycerol 1-phosphate dehydrogenase re... 275 4e-73
gb|AAG18959.1| (AE004997) Vng0406c [Halobacterium sp. NRC-1] 269 4e-71
sp|Q58122|Y712_METJA HYPOTHETICAL PROTEIN MJ0712 >gi|2128458|pir... 267 1e-70
gi|11499264 sn-glycerol-1-phosphate dehydrogenase (gldA) [Archae... 242 4e-63
pir||T35394 probable glycerol dehydrogenase - Streptomyces coeli... 186 4e-46
emb|CAB75379.1| (AL139298) putative dehydrogenase [Streptomyces ... 178 8e-44
gb|AAC69535.1| (AF057294) Cps23fL [Streptococcus pneumoniae] 154 1e-36
gb|AAC38754.1| (AF030373) putative glycerol-2-phosphate dehydrog... 153 2e-36
emb|CAA61933.1| (X89810) AraM protein [Bacillus subtilis] 147 1e-34
sp|P94527|ARAM_BACSU ARABINOSE OPERON PROTEIN ARAM >gi|7475594|p... 146 3e-34
dbj|BAB05581.1| (AP001513) L-arabinose utilization protein [Baci... 145 1e-33
pir||T35279 probable dehydrogenase - Streptomyces coelicolor (fr... 136 3e-31
pir||C72396 hypothetical protein TM0285 - Thermotoga maritima (s... 118 9e-26
gb|AAF24165.1|AF136281_2 (AF136281) glycerol dehydrogenase [Clos... 83 3e-15
pir||G72378 glycerol dehydrogenase - Thermotoga maritima (strain... 81 2e-14
sp|P45511|GLDA_CITFR GLYCEROL DEHYDROGENASE (GLDH) >gi|493084|gb... 77 2e-13
gb|AAC43051.1| (U00006) glycerol dehydrogenase [Escherichia coli] 72 1e-11
pir||D65201 glycerol dehydrogenase (EC 1.1.1.6) gldA - Escherich... 72 1e-11
sp|P32665|GLDA_ECOLI GLYCEROL DEHYDROGENASE (GLDH) 72 1e-11
>pir||B75111 glycerol 1-phosphate dehydrogenase. PAB1907 - Pyrococcus abyssi
(strain Orsay) >gi|5458114|emb|CAB49603.1| (AJ248285)
GLYCEROL 1-PHOSPHATE DEHYDROGENASE. [Pyrococcus abyssi]
Length = 346
Score = 674 bits (1720), Expect = 0.0
Identities = 346/346 (100%), Positives = 346/346 (100%)
Query: 1 MHLMEFPREVILGKNLVPEVNNVIKRLKLESPGLVVYGPVTKKIAGESVKKAIRDEFDVY 60
MHLMEFPREVILGKNLVPEVNNVIKRLKLESPGLVVYGPVTKKIAGESVKKAIRDEFDVY
Sbjct: 1 MHLMEFPREVILGKNLVPEVNNVIKRLKLESPGLVVYGPVTKKIAGESVKKAIRDEFDVY 60
Query: 61 SITVKKAHIGEVEKVEAKIRDYNIKWAIAVGGGSIIDVTKLASYRSGIPFISFPTTASHD 120
SITVKKAHIGEVEKVEAKIRDYNIKWAIAVGGGSIIDVTKLASYRSGIPFISFPTTASHD
Sbjct: 61 SITVKKAHIGEVEKVEAKIRDYNIKWAIAVGGGSIIDVTKLASYRSGIPFISFPTTASHD 120
Query: 121 GIASANASIRGIEAKTSIKARPPIAVIADIEVIKTAPRRYLAAGVGDVISNITAVRDWKL 180
GIASANASIRGIEAKTSIKARPPIAVIADIEVIKTAPRRYLAAGVGDVISNITAVRDWKL
Sbjct: 121 GIASANASIRGIEAKTSIKARPPIAVIADIEVIKTAPRRYLAAGVGDVISNITAVRDWKL 180
Query: 181 AHKLKGEYFSEYAAALSLMSAKMVIRDAEIIRLGNDEGVRKVIKALISSGVAMSIAGSSR 240
AHKLKGEYFSEYAAALSLMSAKMVIRDAEIIRLGNDEGVRKVIKALISSGVAMSIAGSSR
Sbjct: 181 AHKLKGEYFSEYAAALSLMSAKMVIRDAEIIRLGNDEGVRKVIKALISSGVAMSIAGSSR 240
Query: 241 PASGAEHLFSHALDLLLDKPALHGEQTGIGTIIMAYLHGINWRKIKETLKTVGAPTSAYE 300
PASGAEHLFSHALDLLLDKPALHGEQTGIGTIIMAYLHGINWRKIKETLKTVGAPTSAYE
Sbjct: 241 PASGAEHLFSHALDLLLDKPALHGEQTGIGTIIMAYLHGINWRKIKETLKTVGAPTSAYE 300
Query: 301 LGIDPEIIIEALTIAHKIRPERYTILGKEGLTREAAEKAAKITGVI 346
LGIDPEIIIEALTIAHKIRPERYTILGKEGLTREAAEKAAKITGVI
Sbjct: 301 LGIDPEIIIEALTIAHKIRPERYTILGKEGLTREAAEKAAKITGVI 346
>pir||F71022 probable glycerol 1-phaphate dehydrogenase - Pyrococcus horikoshii
>gi|3257899|dbj|BAA30582.1| (AP000006) 351aa long
hypothetical glycerol 1-phaphate dehydrogenase
[Pyrococcus horikoshii]
Length = 351
Score = 611 bits (1558), Expect = e-174
Identities = 302/346 (87%), Positives = 332/346 (95%)
Query: 1 MHLMEFPREVILGKNLVPEVNNVIKRLKLESPGLVVYGPVTKKIAGESVKKAIRDEFDVY 60
MHLMEFPREVILGKNL+ E+NNVIKRLKL SPGLVVYGP+TKKIAG +V+K +++EF+VY
Sbjct: 6 MHLMEFPREVILGKNLIQEINNVIKRLKLGSPGLVVYGPITKKIAGSNVEKIVKEEFEVY 65
Query: 61 SITVKKAHIGEVEKVEAKIRDYNIKWAIAVGGGSIIDVTKLASYRSGIPFISFPTTASHD 120
SITVK+AHI EVE+V +KIRD IKWAIAVGGGSIIDVTKLAS++ GIPFISFPTTASHD
Sbjct: 66 SITVKEAHINEVERVISKIRDKGIKWAIAVGGGSIIDVTKLASFKMGIPFISFPTTASHD 125
Query: 121 GIASANASIRGIEAKTSIKARPPIAVIADIEVIKTAPRRYLAAGVGDVISNITAVRDWKL 180
GIASANASI+G+ KTSIKA+PPIAVIADI+VIKTAP+RYLAAGVGD++SNITAVRDWKL
Sbjct: 126 GIASANASIKGLNVKTSIKAKPPIAVIADIDVIKTAPKRYLAAGVGDIVSNITAVRDWKL 185
Query: 181 AHKLKGEYFSEYAAALSLMSAKMVIRDAEIIRLGNDEGVRKVIKALISSGVAMSIAGSSR 240
AHKLKGEYFSEYAA+LSLMSAKMVIRDAEIIRLG DEG+RKV+KALISSGVAMSIAGSSR
Sbjct: 186 AHKLKGEYFSEYAASLSLMSAKMVIRDAEIIRLGQDEGIRKVVKALISSGVAMSIAGSSR 245
Query: 241 PASGAEHLFSHALDLLLDKPALHGEQTGIGTIIMAYLHGINWRKIKETLKTVGAPTSAYE 300
PASGAEHLFSHALD+LLDKPALHGEQTGIGTIIMAYLHGINW+KI++TLK VGAPT+AYE
Sbjct: 246 PASGAEHLFSHALDMLLDKPALHGEQTGIGTIIMAYLHGINWKKIRDTLKIVGAPTTAYE 305
Query: 301 LGIDPEIIIEALTIAHKIRPERYTILGKEGLTREAAEKAAKITGVI 346
LGIDPEIIIEALTIAH IRPERYTILGKEG+TREAAEKAAKITGVI
Sbjct: 306 LGIDPEIIIEALTIAHTIRPERYTILGKEGITREAAEKAAKITGVI 351
>pir||B69181 conserved hypothetical protein MTH610 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|1669356|dbj|BAA13644.1| (D88555) glycerol 1-phaphate
dehydrogenase [Methanobacterium thermoautotrophicum]
>gi|2621690|gb|AAB85116.1| (AE000842) glycerol
1-phosphate dehydrogenase [Methanobacterium
thermoautotrophicum]
Length = 347
Score = 358 bits (910), Expect = 4e-98
Identities = 185/344 (53%), Positives = 246/344 (70%), Gaps = 3/344 (0%)
Query: 4 MEFPREVILGKNLVPEVNNVIKRLKLESPGLVVYGPVTKKIAGESVKKAIRDE-FDVYSI 62
++ PRE+ G ++ + + + L+ E +VV GP T +IAGE+ ++++ E F+V +
Sbjct: 6 IQLPREIYTGPGVIEDTGRICRDLRFEGRAMVVTGPRTLQIAGEAAIESLQAEGFEVDQV 65
Query: 63 TVKKAHIGEVEKVEAKIRDYNIKWAIAVGGGSIIDVTKLASYRSGIPFISFPTTASHDGI 122
TV A + V V+ + ++ + VGGG +IDV K+++ G+ FIS PT ASHDGI
Sbjct: 66 TVDDATMASVRNVQDGLDGVSV--VLGVGGGKVIDVAKMSATLEGLHFISVPTAASHDGI 123
Query: 123 ASANASIRGIEAKTSIKARPPIAVIADIEVIKTAPRRYLAAGVGDVISNITAVRDWKLAH 182
AS ASIR E S++A PI VIAD E+I AP R LA+G D+ISN TA+ DWKLAH
Sbjct: 124 ASPRASIRNGEGTASLEASSPIGVIADTEIISRAPFRLLASGCADIISNYTAIMDWKLAH 183
Query: 183 KLKGEYFSEYAAALSLMSAKMVIRDAEIIRLGNDEGVRKVIKALISSGVAMSIAGSSRPA 242
+L E +SE AAALSLM+AKM+I+ A+ I+ G +E R +K+LISSG+A+SIAGSSRPA
Sbjct: 184 RLLNERYSESAAALSLMTAKMIIKSADAIKEGLEESARLAVKSLISSGIAISIAGSSRPA 243
Query: 243 SGAEHLFSHALDLLLDKPALHGEQTGIGTIIMAYLHGINWRKIKETLKTVGAPTSAYELG 302
SG+EH FSHALD++ KPALHGEQ G+GTI+M +LHG +W+ I++ L + APT+A ELG
Sbjct: 244 SGSEHKFSHALDMIAPKPALHGEQCGVGTIMMMHLHGGDWQFIRDALARINAPTTAAELG 303
Query: 303 IDPEIIIEALTIAHKIRPERYTILGKEGLTREAAEKAAKITGVI 346
IDPE IIEALT+AH IR ERYTILG GLTREAAE+ AKIT VI
Sbjct: 304 IDPEYIIEALTMAHNIRRERYTILGDRGLTREAAERLAKITEVI 347
>gb|AAK41055.1| Glycerol-1-phosphate dehydrogenase (gldA) [Sulfolobus solfataricus]
Length = 351
Score = 334 bits (847), Expect = 1e-90
Identities = 169/347 (48%), Positives = 244/347 (69%), Gaps = 4/347 (1%)
Query: 2 HLMEFPREVILGKNLVPEVNNVIKRLKLESPGLVVYGP-VTKKIAGESVKKAIRD-EFDV 59
H++ PR V +G ++V +++ +L + P L+V G TKKIA + ++ +D +++V
Sbjct: 6 HVISLPRRVFVGHDIVYDISIYFSQLGVTPPFLIVTGTKYTKKIADKVIENLPKDAKYEV 65
Query: 60 YSITVKKAHIGEVEKVEAKIRDYNIKWAIAVGGGSIIDVTKLASYRSGIPFISFPTTASH 119
+ + A + +V VE I+ + + +GGG +IDVTK A++R+ + F+S PT+ SH
Sbjct: 66 --VEIDSATLDDVYMVEEVIKRISPSLLLGIGGGKVIDVTKYAAFRNSLEFVSIPTSPSH 123
Query: 120 DGIASANASIRGIEAKTSIKARPPIAVIADIEVIKTAPRRYLAAGVGDVISNITAVRDWK 179
DGI S ASI+G++ S+KA+ P+A+IADIE++ +PRR + AG+GD I I AVRDWK
Sbjct: 124 DGITSPFASIKGLQKPVSVKAKEPLAIIADIEILSLSPRRLINAGIGDTIGKIIAVRDWK 183
Query: 180 LAHKLKGEYFSEYAAALSLMSAKMVIRDAEIIRLGNDEGVRKVIKALISSGVAMSIAGSS 239
LA KL+GEY+ +Y A+L+LMSAK + +II GVR +++ALISSGVAM +AGS+
Sbjct: 184 LAAKLRGEYYGDYTASLALMSAKHAFQCTKIINKDIKYGVRMLMEALISSGVAMGMAGST 243
Query: 240 RPASGAEHLFSHALDLLLDKPALHGEQTGIGTIIMAYLHGINWRKIKETLKTVGAPTSAY 299
RPASG+EHLF+HA++L+ + LHGE G+GTIIMAYLHGINW+ I+ LK +G P A
Sbjct: 244 RPASGSEHLFAHAVELIHPEGILHGELVGLGTIIMAYLHGINWKIIRNRLKKIGFPVKAK 303
Query: 300 ELGIDPEIIIEALTIAHKIRPERYTILGKEGLTREAAEKAAKITGVI 346
+LG+ E +I+ALTIAH IRPERYTILG GLT +AEK A++T +I
Sbjct: 304 DLGLSDEEVIKALTIAHTIRPERYTILGDRGLTWSSAEKIARVTKII 350
>emb|CAB57543.1| (Y18930) glycerol 1-phosphate dehydrogenase [Sulfolobus
solfataricus]
Length = 351
Score = 334 bits (847), Expect = 1e-90
Identities = 169/347 (48%), Positives = 244/347 (69%), Gaps = 4/347 (1%)
Query: 2 HLMEFPREVILGKNLVPEVNNVIKRLKLESPGLVVYGP-VTKKIAGESVKKAIRD-EFDV 59
H++ PR V +G ++V +++ +L + P L+V G TKKIA + ++ +D +++V
Sbjct: 6 HVISLPRRVFVGHDIVYDISIYFSQLGVTPPFLIVTGTKYTKKIADKVIENLPKDAKYEV 65
Query: 60 YSITVKKAHIGEVEKVEAKIRDYNIKWAIAVGGGSIIDVTKLASYRSGIPFISFPTTASH 119
+ + A + +V VE I+ + + +GGG +IDVTK A++R+ + F+S PT+ SH
Sbjct: 66 --VEIDSATLDDVYMVEEVIKRISPSLLLGIGGGKVIDVTKYAAFRNSLEFVSIPTSPSH 123
Query: 120 DGIASANASIRGIEAKTSIKARPPIAVIADIEVIKTAPRRYLAAGVGDVISNITAVRDWK 179
DGI S ASI+G++ S+KA+ P+A+IADIE++ +PRR + AG+GD I I AVRDWK
Sbjct: 124 DGITSPFASIKGLQKPVSVKAKEPLAIIADIEILSLSPRRLINAGIGDTIGKIIAVRDWK 183
Query: 180 LAHKLKGEYFSEYAAALSLMSAKMVIRDAEIIRLGNDEGVRKVIKALISSGVAMSIAGSS 239
LA KL+GEY+ +Y A+L+LMSAK + +II GVR +++ALISSGVAM +AGS+
Sbjct: 184 LAAKLRGEYYGDYTASLALMSAKHAFQCTKIINKDIKYGVRMLMEALISSGVAMGMAGST 243
Query: 240 RPASGAEHLFSHALDLLLDKPALHGEQTGIGTIIMAYLHGINWRKIKETLKTVGAPTSAY 299
RPASG+EHLF+HA++L+ + LHGE G+GTIIMAYLHGINW+ I+ LK +G P A
Sbjct: 244 RPASGSEHLFAHAVELIHPEGILHGELVGLGTIIMAYLHGINWKIIRNRLKKIGFPVKAK 303
Query: 300 ELGIDPEIIIEALTIAHKIRPERYTILGKEGLTREAAEKAAKITGVI 346
+LG+ E +I+ALTIAH IRPERYTILG GLT +AEK A++T +I
Sbjct: 304 DLGLSDEEVIKALTIAHTIRPERYTILGDRGLTWSSAEKIARVTKII 350
>pir||H72748 probable glycerol dehydrogenase APE0519 - Aeropyrum pernix (strain
K1) >gi|5104168|dbj|BAA79484.1| (AP000059) 370aa long
hypothetical glycerol dehydrogenase [Aeropyrum pernix]
Length = 370
Score = 322 bits (816), Expect = 4e-87
Identities = 171/347 (49%), Positives = 235/347 (67%), Gaps = 2/347 (0%)
Query: 2 HLMEFPREVILGKNLVPEVNNVIKRLKLE-SPGLVVYGPVTKKIAGESVKKAIRDE-FDV 59
H ++ PR +++G ++ + + + S LVV GP E ++ ++ E V
Sbjct: 24 HRIDLPRTIVVGGGVLDKAGGYVSGVAQRGSYVLVVSGPTVSSKYFERLRASLEAEGLTV 83
Query: 60 YSITVKKAHIGEVEKVEAKIRDYNIKWAIAVGGGSIIDVTKLASYRSGIPFISFPTTASH 119
++ A + E+V + + I+ +GGG IDV K AS R+G F+S PT ASH
Sbjct: 84 GLKIIRDATVETAEEVAREALESRIEVVAGLGGGKSIDVAKYASKRAGSVFVSIPTVASH 143
Query: 120 DGIASANASIRGIEAKTSIKARPPIAVIADIEVIKTAPRRYLAAGVGDVISNITAVRDWK 179
DGI S +S++G + S A+ P A+I D++VI APRRY AG GD+I TAV DW+
Sbjct: 144 DGITSPFSSLKGFDKPISRPAKAPEAIIIDVDVIAEAPRRYNIAGFGDLIGKYTAVLDWR 203
Query: 180 LAHKLKGEYFSEYAAALSLMSAKMVIRDAEIIRLGNDEGVRKVIKALISSGVAMSIAGSS 239
LAHKL+ EY+ EYAA+L+L+SAK V + AE I LG EG R +++AL+SSGV+M IAGS+
Sbjct: 204 LAHKLRLEYYGEYAASLALLSAKHVSQYAEEIALGTREGYRVLLEALVSSGVSMCIAGST 263
Query: 240 RPASGAEHLFSHALDLLLDKPALHGEQTGIGTIIMAYLHGINWRKIKETLKTVGAPTSAY 299
RPASG+EHLF+HAL ++ LHGE G+GTI+MAYLHG NWR+I+ LKTVGAPT+A
Sbjct: 264 RPASGSEHLFAHALHIVARNKPLHGEAVGVGTIMMAYLHGKNWRRIRGLLKTVGAPTNAK 323
Query: 300 ELGIDPEIIIEALTIAHKIRPERYTILGKEGLTREAAEKAAKITGVI 346
ELG++ + ++EALTIA +IRPERYTILG++GLTREAAE A+ TGVI
Sbjct: 324 ELGVEDDEVVEALTIAARIRPERYTILGEKGLTREAAEALARKTGVI 370
>emb|CAC12283.1| (AL445066) glycerol 1-phosphate dehydrogenase related protein
[Thermoplasma acidophilum]
Length = 352
Score = 275 bits (697), Expect = 4e-73
Identities = 147/344 (42%), Positives = 213/344 (61%), Gaps = 1/344 (0%)
Query: 4 MEFPREVILGKNLVPEVNNVIKRLKLESPGLVVYGPVTKKIAGESVKKAIRDE-FDVYSI 62
M FPR+V +G +++ + +V+ ++V G +T ++AG V + ++V+
Sbjct: 9 MHFPRDVYIGHDVLEHIVDVVGENSRNKNAIIVSGDLTYELAGRKVHDLLSTYGYEVHVF 68
Query: 63 TVKKAHIGEVEKVEAKIRDYNIKWAIAVGGGSIIDVTKLASYRSGIPFISFPTTASHDGI 122
A+ +E++E + D I VGGG+ ID+ K ++ +PF+S PT SHDGI
Sbjct: 69 LAGNANYDTLERIEYESLDIQAGIVIGVGGGAKIDLAKKLAFDRKLPFVSVPTAPSHDGI 128
Query: 123 ASANASIRGIEAKTSIKARPPIAVIADIEVIKTAPRRYLAAGVGDVISNITAVRDWKLAH 182
AS AS+R S + PI VIAD ++ AP RYLAAG DVISN++AV+DWKLAH
Sbjct: 129 ASPRASLRRNGISYSEEGAMPIGVIADTAIMIKAPYRYLAAGAADVISNLSAVKDWKLAH 188
Query: 183 KLKGEYFSEYAAALSLMSAKMVIRDAEIIRLGNDEGVRKVIKALISSGVAMSIAGSSRPA 242
+LKGE FS AAA+S SA+ V+ I+ + V V K +++SG AM+IAG+SRP
Sbjct: 189 RLKGEEFSSSAAAMSEYSAQEVLSQINEIKKYEESSVWLVTKNILASGTAMAIAGNSRPG 248
Query: 243 SGAEHLFSHALDLLLDKPALHGEQTGIGTIIMAYLHGINWRKIKETLKTVGAPTSAYELG 302
SG+EHLF+HAL+ + LHGE +GT+I YLH NW++IKE +G + + G
Sbjct: 249 SGSEHLFAHALEAAGVENMLHGEMCAMGTVISMYLHDENWQQIKEAFDNLGISIRSRDYG 308
Query: 303 IDPEIIIEALTIAHKIRPERYTILGKEGLTREAAEKAAKITGVI 346
I+ EI+I AL AH IRPERYTILG+ ++ +AA KA ++TG+I
Sbjct: 309 IEDEIVINALRTAHAIRPERYTILGESDMSYDAAVKALELTGII 352
>gb|AAG18959.1| (AE004997) Vng0406c [Halobacterium sp. NRC-1]
Length = 352
Score = 269 bits (680), Expect = 4e-71
Identities = 154/349 (44%), Positives = 219/349 (62%), Gaps = 10/349 (2%)
Query: 4 MEFPREVILGKNLVPEVNNVIKRLKLESPGLVVYGPVTKKIAGESVK---KAIRDEFDVY 60
+ PR V++G ++ + V++ L LVV P K +A E+V +A+ D+ V
Sbjct: 8 IRLPRNVVVGHGVLDDAVEVVRDTHLTGRPLVVTSPTPKTVAAENVVAQFEAVGDDPAV- 66
Query: 61 SITVKKAHIGEVEKVEAKIRDYNIKWAIAVGGGSIIDVTKLASYRSGIPFISFPTTASHD 120
+ V++A VE+V + + + + VGGG ID+ KLAS + F+S PT ASHD
Sbjct: 67 -VVVEEATFNSVERVLGEAEAVDPGYLVGVGGGKAIDIAKLASDHLNVGFVSVPTAASHD 125
Query: 121 GIASANASIRGIEAKTSIKARPPIAVIADIEVIKTAPRRYLAAGVGDVISNITAVRDWKL 180
GI S S+ + + S+ A PP+AVIAD VI AP AG D+ISN TAV+DW+L
Sbjct: 126 GIVSGRGSVPEGDTRHSVSAAPPLAVIADTGVIADAPWELTTAGCADIISNYTAVKDWRL 185
Query: 181 AHKLKGEYFSEYAAALSLMSAKMVIRDAEIIRLGNDEGVRKVIKALISSGVAMSIAGSSR 240
A++L+ +SEYA ALS M+A+M++ +A I+ +E V+KAL+SSGVAMSIA SSR
Sbjct: 186 ANRLQHVPYSEYAGALSQMTAEMLVDNAANIKPELEESAWVVVKALVSSGVAMSIADSSR 245
Query: 241 PASGAEHLFSHALDLLLDKPALHGEQTGIGTIIMAYLHG---INWRKIKETLKTVGAPTS 297
PASG+EHLFSH LD + ALHG Q G+G+I+ YLH W +++ L ++ APT+
Sbjct: 246 PASGSEHLFSHQLDRIAPGKALHGHQVGVGSILAEYLHSGQEGQWMAVRDALASLDAPTT 305
Query: 298 AYELGIDPEIIIEALTIAHKIRPERYTILGKEGLTREAAEKAAKITGVI 346
A ELG+ + ++ ALT AH+IR +RYTILG G++ AA +AA TGVI
Sbjct: 306 ADELGVADDEVLAALTSAHEIR-DRYTILG-GGISEVAAREAASRTGVI 352
>sp|Q58122|Y712_METJA HYPOTHETICAL PROTEIN MJ0712 >gi|2128458|pir||H64388 hypothetical
protein MJ0712 - Methanococcus jannaschii
>gi|1591429|gb|AAB98707.1| (U67518) glycerol
dehydrogenase (gldA) [Methanococcus jannaschii]
Length = 335
Score = 267 bits (676), Expect = 1e-70
Identities = 167/355 (47%), Positives = 228/355 (64%), Gaps = 40/355 (11%)
Query: 7 PREVILGKNLVPEVNNVIKRLKLESPGLVVYGPVTKKIAGESVKKAIRDEFDVYSITVKK 66
PR I+ + ++ ++K+L L++P + I G++ KK R +D+
Sbjct: 6 PRYTIIEDGAINKIEEILKKLNLKNPLV---------ITGKNTKKYCRFFYDI------- 49
Query: 67 AHIGEV-EKVEAKIRDYNI-KWAIAVGGGSIIDVTKLASYRSGIPFISFPTTASHDGIAS 124
+ E+ +E +++ Y I +GGG ID K +Y+ GIPFIS PTTAS+DGIAS
Sbjct: 50 VYYDEILNNLEIELKKYTAYDCVIGIGGGRSIDTGKYLAYKLGIPFISVPTTASNDGIAS 109
Query: 125 ANASIRGIEAKTSIKARPPIAVIADIEVIKTAPRRYLAAGVGDVISNITAVRDWKLAHKL 184
SIR + S PIA+IAD E+IK +PRR L+AG+GD++SNITAV DWKLA+K
Sbjct: 110 PIVSIR----QPSFMVDAPIAIIADTEIIKKSPRRLLSAGMGDIVSNITAVLDWKLAYKE 165
Query: 185 KGEYFSEYAAALSLMSAKMVIRDAEIIRLGNDEGVRKVIKALISSGVAMSIAGSSRPASG 244
KGE +SE +A S AK +I + ++ E K++KAL+ SG+A++IA SSRPASG
Sbjct: 166 KGEKYSESSAIFSKTIAKELI--SYVLNSDLSEYHNKLVKALVGSGIAIAIANSSRPASG 223
Query: 245 AEHLFSHALDLL-----LDKPALHGEQTGIGTIIMAYLH--------GINWRKIKETLKT 291
+EHLFSHALD L L+ +LHGEQ GIGTI+M+YLH G++ KIK +LK
Sbjct: 224 SEHLFSHALDKLKEEYNLNINSLHGEQCGIGTIMMSYLHEKENKKLSGLH-EKIKMSLKK 282
Query: 292 VGAPTSAYELGIDPEIIIEALTIAHKIRPERYTILGKEGLTREAAEKAAKITGVI 346
V APT+A ELG D +IIIEALT+AHKIR R+TIL ++GL+RE A K A+ TGVI
Sbjct: 283 VDAPTTAKELGFDEDIIIEALTMAHKIR-NRWTIL-RDGLSREEARKLAEETGVI 335
>gi|11499264 sn-glycerol-1-phosphate dehydrogenase (gldA) [Archaeoglobus
fulgidus] >gi|7450317|pir||A69459
sn-glycerol-1-phosphate dehydrogenase (gldA) homolog -
Archaeoglobus fulgidus >gi|2648883|gb|AAB89576.1|
(AE000988) sn-glycerol-1-phosphate dehydrogenase (gldA)
[Archaeoglobus fulgidus]
Length = 351
Score = 242 bits (612), Expect = 4e-63
Identities = 141/349 (40%), Positives = 214/349 (60%), Gaps = 11/349 (3%)
Query: 4 MEFPREVILGKNLVPEVNNVIKRLKLESPGLVVYGPVTKKIAGESVKKAIRDEFDVYSIT 63
++ P V +G+N++ ++ V++ L L++ V K + ++K+ ++D F+ +
Sbjct: 6 VDLPYHVYIGENVISKLPKVLRSLDANY-FLLLTDEVVKNLVVVNLKETLKD-FEYDMML 63
Query: 64 VKKAHIGEVEKVEAK--IRDYNIKWAIAVGGGSIIDVTKLASYRSGIPFISFPTTASHDG 121
V+ A + E K+ + DY+ + VGGG ++DV+K+ S IS PTTASHDG
Sbjct: 64 VESAKMEEARKIVLRGGFADYDA--VVGVGGGKVLDVSKVVSSELNASMISVPTTASHDG 121
Query: 122 IASANASIRGIEAKTSIKARPPIAVIADIEVIKTAPRRYLAAGVGDVISNITAVRDWKLA 181
IAS AS + SI PP AVIAD+ +IK P R L +G GD++SNI++V+DW+LA
Sbjct: 122 IASPVASFKENGKPISISTNPPSAVIADLNIIKNCPIRLLRSGYGDLVSNISSVKDWQLA 181
Query: 182 HKLKGEYFSEYAAALSLMSAKMVIRDAEIIRLGNDEGVRKVIKALISSGVAMSIAGSSRP 241
L GE ++E AA++++M A++++ A+ + L + +++ LI SGVA++ GSSRP
Sbjct: 182 RDLVGEDYNEVAASIAVMPAQLMVSKADELDLTLPPHLLMLLRGLIMSGVAIAFVGSSRP 241
Query: 242 ASGAEHLFSHALDLLLDKPALHGEQTGIGTIIMAYLHGI-----NWRKIKETLKTVGAPT 296
ASGAEH FSHALD L HGEQ +GTIIM YLH +W +IK +L+ V APT
Sbjct: 242 ASGAEHKFSHALDYLGYGNGTHGEQVALGTIIMEYLHEKYYGRGDWEQIKMSLEKVHAPT 301
Query: 297 SAYELGIDPEIIIEALTIAHKIRPERYTILGKEGLTREAAEKAAKITGV 345
+A E+G+ E +IEAL +A K+R +R+TIL T+E E + TGV
Sbjct: 302 TAKEIGLTREQVIEALMLATKLRKKRFTILEAVKPTKEEFELVVEKTGV 350
>pir||T35394 probable glycerol dehydrogenase - Streptomyces coelicolor
>gi|4539158|emb|CAB39687.1| (AL049485) putative glycerol
dehydrogenase [Streptomyces coelicolor A3(2)]
Length = 340
Score = 186 bits (467), Expect = 4e-46
Identities = 97/250 (38%), Positives = 152/250 (60%), Gaps = 5/250 (2%)
Query: 88 IAVGGGSIIDVTKLASYRSGIPFISFPTTASHDGIASANASIRGIEAKTSIKARPPIAVI 147
+ +GGG IID K A+ R G+P ++ PT +HDG+ S A++ + S PIAV+
Sbjct: 78 VGLGGGKIIDCAKFAAARIGLPLVAVPTNLAHDGLCSPVATLDNDAGRGSYGVPNPIAVV 137
Query: 148 ADIEVIKTAPRRYLAAGVGDVISNITAVRDWKLAHKLKGEYFSEYAAALSLMSAKMVIRD 207
D++VI+ AP R++ AG+GD +SN++A+ DW+LA+++KGE AAA++ + + V+R
Sbjct: 138 IDLDVIRAAPARFVRAGIGDAVSNVSAIADWELANRVKGEKIDGLAAAMARQAGEAVLRH 197
Query: 208 AEIIRLGNDEGVRKVIKALISSGVAMSIAGSSRPASGAEHLFSHALDLLL-DKPALHGEQ 266
+G+++ ++ + +AL+ SG+AMS++G SRP+SGA H +HA DLL ++ A HGEQ
Sbjct: 198 PG--GIGDNDFLQVLAEALVLSGIAMSVSGDSRPSSGACHEINHAFDLLFPERAAAHGEQ 255
Query: 267 TGIGTIIMAYLHGINWR--KIKETLKTVGAPTSAYELGIDPEIIIEALTIAHKIRPERYT 324
G+G YL G + + L+ G P E+G PE A+ A + RP RYT
Sbjct: 256 CGLGAAFAMYLRGAHEESANMARVLRRHGLPVLPEEIGFTPEEFFRAVEFAPQTRPGRYT 315
Query: 325 ILGKEGLTRE 334
IL LT +
Sbjct: 316 ILEHLDLTTD 325
>emb|CAB75379.1| (AL139298) putative dehydrogenase [Streptomyces coelicolor A3(2)]
Length = 340
Score = 178 bits (447), Expect = 8e-44
Identities = 102/255 (40%), Positives = 148/255 (58%), Gaps = 5/255 (1%)
Query: 88 IAVGGGSIIDVTKLASYRSGIPFISFPTTASHDGIASANASIRGIEAKTSIKARPPIAVI 147
+ +GGG +ID K A+ R G+P ++ T SHDGI S + + + S PIA++
Sbjct: 78 VGLGGGKVIDCAKFAAARVGLPMVAVATNLSHDGICSPVSILDNDAGRGSYGVPTPIALV 137
Query: 148 ADIEVIKTAPRRYLAAGVGDVISNITAVRDWKLAHKLKGEYFSEYAAALSLMSAKMVIRD 207
D+ VI+ AP R++ +G+GD +SN++AV DW+LAH++ GE AAAL+ + + V+R
Sbjct: 138 VDLAVIREAPIRFVRSGIGDAVSNVSAVADWELAHRVNGEKVDGLAAALARQAGEAVLRH 197
Query: 208 AEIIRLGNDEGVRKVIKALISSGVAMSIAGSSRPASGAEHLFSHALDLLLD-KPALHGEQ 266
G+D + + + L+ SG+AM+IAG +RP+SGA H SHALDLL + A HGEQ
Sbjct: 198 PG--GCGDDGFLTVLTEGLVLSGIAMTIAGHTRPSSGACHEISHALDLLHPRRAASHGEQ 255
Query: 267 TGIGTIIMAYLHGINWRKI--KETLKTVGAPTSAYELGIDPEIIIEALTIAHKIRPERYT 324
GIG YL G + +TL+ G P A E+G E + A+ A + RP RYT
Sbjct: 256 VGIGAAFATYLRGDREGALLMADTLRRHGLPVVAREIGFGDEEFVRAVGFAPQTRPGRYT 315
Query: 325 ILGKEGLTREAAEKA 339
IL LT A +A
Sbjct: 316 ILEHLDLTPARAGEA 330
>gb|AAC69535.1| (AF057294) Cps23fL [Streptococcus pneumoniae]
Length = 342
Score = 154 bits (386), Expect = 1e-36
Identities = 101/331 (30%), Positives = 168/331 (50%), Gaps = 3/331 (0%)
Query: 12 LGKNLVPEVNNVIKRLKLESPGLVVYGPVTKKIAGESVKKAIRDEFDVYSITVKKAHIGE 71
+G + +++ + + + L PV + G V+ I + V + I
Sbjct: 8 IGSGAIHQISATLSQNSISGKILYCADPVVDDLYGSIVRSQIEEIGRVKEESCNYNTIAY 67
Query: 72 VEKVEAKIRDYNIKWAIAVGGGSIIDVTKLASYRSGIPFISFPTTASHDGIASANASI-R 130
+ + +I + +GGG ++DV K AS+ S P++S PTTA++DGIAS A + R
Sbjct: 68 AMNIAERAIATDIDCIVGMGGGRVLDVCKYASFISKRPYLSIPTTAANDGIASPVAVLKR 127
Query: 131 GIEAKTSIKARPPIAVIADIEVIKTAPRRYLAAGVGDVISNITAVRDWKLAHKLKGEYFS 190
+ S+ A P + DI+VI + P + + AG+GD ISN TA++DW+LA + +
Sbjct: 128 QDDRPKSLGAAIPSMTLIDIDVIASGPIQNIKAGIGDTISNYTALKDWELAVERGKDEMH 187
Query: 191 EYAAALSLMSAKMVIRDAEIIRLGNDEGVRKVIKALISSGVAMSIAGSSRPASGAEHLFS 250
+A +S S +++ + + ++ +L+ SG+AM AGSSRP SG+EHLFS
Sbjct: 188 GFAYLMSQNSLDALMKTK--YNSITPDFIEVLVNSLVLSGIAMDFAGSSRPVSGSEHLFS 245
Query: 251 HALDLLLDKPALHGEQTGIGTIIMAYLHGINWRKIKETLKTVGAPTSAYELGIDPEIIIE 310
HALD LHG Q +GT+ + L + + + L+ + LGID E+ I
Sbjct: 246 HALDYYGSTRNLHGIQVALGTVAVLKLIENSVDTVVDYLQRFEVHINPKLLGIDEELFIY 305
Query: 311 ALTIAHKIRPERYTILGKEGLTREAAEKAAK 341
+ A K+R RYT L + L+ + ++ K
Sbjct: 306 CMQHATKMRSNRYTYLHEVDLSTDRLKQIYK 336
>gb|AAC38754.1| (AF030373) putative glycerol-2-phosphate dehydrogenase
[Streptococcus pneumoniae]
Length = 335
Score = 153 bits (384), Expect = 2e-36
Identities = 100/324 (30%), Positives = 165/324 (50%), Gaps = 3/324 (0%)
Query: 12 LGKNLVPEVNNVIKRLKLESPGLVVYGPVTKKIAGESVKKAIRDEFDVYSITVKKAHIGE 71
+G + +++ + + + L PV + G V+ I++ V + I
Sbjct: 8 IGSGAIHQISATLSQNSISGKILYCADPVVDDLYGSIVRSQIKEIGRVKEESCNYNTIAY 67
Query: 72 VEKVEAKIRDYNIKWAIAVGGGSIIDVTKLASYRSGIPFISFPTTASHDGIASANASI-R 130
+ + +I + +GGG ++DV K AS+ S P++S PTTA++DGIAS A + R
Sbjct: 68 AMNIAERAIATDIDCIVGMGGGRVLDVCKYASFISKRPYLSIPTTAANDGIASPVAVLKR 127
Query: 131 GIEAKTSIKARPPIAVIADIEVIKTAPRRYLAAGVGDVISNITAVRDWKLAHKLKGEYFS 190
+ S+ A P + DI+VI + P + + AG+GD ISN TA++DW+LA + +
Sbjct: 128 QDDRPKSLGAAIPSMTLIDIDVIASGPIQNIKAGIGDTISNYTALKDWELAVERGKDEMH 187
Query: 191 EYAAALSLMSAKMVIRDAEIIRLGNDEGVRKVIKALISSGVAMSIAGSSRPASGAEHLFS 250
+A +S S +++ + + ++ L+ SG+AM AGSSRP SG+EHLFS
Sbjct: 188 GFAYLMSQNSLDALMKTK--YNSITPDFIEVLVNPLVLSGIAMDFAGSSRPVSGSEHLFS 245
Query: 251 HALDLLLDKPALHGEQTGIGTIIMAYLHGINWRKIKETLKTVGAPTSAYELGIDPEIIIE 310
HALD LHG Q +GT+ + L + + + L+ + LGID E+ I
Sbjct: 246 HALDYYGSTRNLHGIQVALGTVAVLKLIENSVDTVVDYLQRFEVHINPKLLGIDEELFIY 305
Query: 311 ALTIAHKIRPERYTILGKEGLTRE 334
+ A K+R RYT L + L+ +
Sbjct: 306 CMQHATKMRSNRYTYLHEVDLSTD 329
>emb|CAA61933.1| (X89810) AraM protein [Bacillus subtilis]
Length = 394
Score = 147 bits (368), Expect = 1e-34
Identities = 99/348 (28%), Positives = 172/348 (48%), Gaps = 38/348 (10%)
Query: 9 EVILGKNLVPEVNNVIKRLKLESPGLVVYGPVTKKIAGESVKKAIRDE-FDVYSITVKKA 67
E++LGK + + +KR K ++V T +IAG ++ + E F + + +
Sbjct: 26 EIVLGKQAADSLLDYVKR-KNNQHIVLVCDANTHRIAGIDLENRLNQEGFQAECLIIPEN 84
Query: 68 HIGEVEKVEAKIRDYNIKWA------IAVGGGSIIDVTKLASYRSGIPFISFPTTASHDG 121
G+V E + I IAVG G+I D+ + A+++ +PFIS+PT S DG
Sbjct: 85 EAGDVTADERSLIHVLIHTKQPTDVMIAVGSGTIHDIVRFAAFQRDLPFISYPTAPSVDG 144
Query: 122 IASANASIRGIEAKTSIKARPPIAVIADIEVIKTAPRRYLAAGVGDVISNITAVRDWKLA 181
SA A I KT+I+ + P A+ AD++++K AP+ +AAG GD++ IT++ DW+++
Sbjct: 145 FTSAGAPIILYGTKTTIQTKAPSALFADLDLLKAAPQSMVAAGFGDMLGKITSLADWEIS 204
Query: 182 HKLKGEYFSEYAAALSLMSAKMVIRDAEIIRLGNDEGVRKVIKALISSGVAMSIAGSSRP 241
L GE +S A + + I E I + + G+R ++++L+ SG+ M SRP
Sbjct: 205 RHLAGEPYSPAGAKIVQEALAACIEHTEDIAMKTETGIRVLMESLLVSGLVMLALDHSRP 264
Query: 242 ASGAEHLFSHALDL-LLDKPA---LHGEQTGIGTIIMAYLH-------GIN--------- 281
ASG EH SH +++ L++K LHG + G +++ + G+N
Sbjct: 265 ASGGEHHISHWIEMELMEKKRPQILHGAKVGCAAVLLTDTYRKLAQDDGLNEFSPSRREA 324
Query: 282 ----------WRKIKETLKTVGAPTSAYELGIDPEIIIEALTIAHKIR 319
+ + L++ G P E+G+ + + A AH +R
Sbjct: 325 IQSAYQTLPRGEVLADWLRSAGGPADFDEIGVGQDSVKNAFRHAHTLR 372
>sp|P94527|ARAM_BACSU ARABINOSE OPERON PROTEIN ARAM >gi|7475594|pir||H69587 L-arabinose
operon araM - Bacillus subtilis
>gi|1770018|emb|CAA99591.1| (Z75208) hypothetical
protein [Bacillus subtilis] >gi|2635341|emb|CAB14836.1|
(Z99118) alternate gene name: yseB~L-arabinose operon
[Bacillus subtilis]
Length = 394
Score = 146 bits (366), Expect = 3e-34
Identities = 99/348 (28%), Positives = 172/348 (48%), Gaps = 38/348 (10%)
Query: 9 EVILGKNLVPEVNNVIKRLKLESPGLVVYGPVTKKIAGESVKKAIRDE-FDVYSITVKKA 67
E++LGK + + +KR K ++V T +IAG ++ + E F + + +
Sbjct: 26 EIVLGKQAADSLLDYVKR-KNNQHIVLVCDANTHRIAGIDLENRLNQEGFQAECLIIPEN 84
Query: 68 HIGEVEKVEAKIRDYNIKWA------IAVGGGSIIDVTKLASYRSGIPFISFPTTASHDG 121
G+V E + I IAVG G+I D+ + A+++ +PFIS+PT S DG
Sbjct: 85 EAGDVTADERSLIHVLIHTKQPTDVMIAVGSGTIHDIVRFAAFQRDLPFISYPTAPSVDG 144
Query: 122 IASANASIRGIEAKTSIKARPPIAVIADIEVIKTAPRRYLAAGVGDVISNITAVRDWKLA 181
SA A I KT+I+ + P A+ AD++++K AP+ +AAG GD++ IT++ DW+++
Sbjct: 145 FTSAGAPIILYGTKTTIQTKAPSALFADLDLLKAAPQSMVAAGFGDMLGKITSLADWEIS 204
Query: 182 HKLKGEYFSEYAAALSLMSAKMVIRDAEIIRLGNDEGVRKVIKALISSGVAMSIAGSSRP 241
L GE +S A + + I E I + + G+R ++++L+ SG+ M SRP
Sbjct: 205 RHLAGEPYSPAGAKIVQEALAACIEHTEDIAMKTETGIRVLMESLLVSGLVMLALDHSRP 264
Query: 242 ASGAEHLFSHALDL-LLDKPA---LHGEQTGIGTIIMAYLH-------GIN--------- 281
ASG EH SH +++ L++K LHG + G +++ + G+N
Sbjct: 265 ASGGEHHISHWIEMELMEKKRPQILHGAKVGCAAVLLTDTYRKLAQDDGLNEFSPSRREA 324
Query: 282 ----------WRKIKETLKTVGAPTSAYELGIDPEIIIEALTIAHKIR 319
+ + L++ G P E+G+ + + A AH +R
Sbjct: 325 IQSAYQTLPRGEVLADWLRSAGGPAYFDEIGVGQDSVKNAFRHAHTLR 372
>dbj|BAB05581.1| (AP001513) L-arabinose utilization protein [Bacillus halodurans]
Length = 399
Score = 145 bits (361), Expect = 1e-33
Identities = 87/254 (34%), Positives = 139/254 (54%), Gaps = 8/254 (3%)
Query: 46 GESVKKAIRDEFDVYSITVKKAHIGEVEKVEAKIRDYNIKWAIAVGGGSIIDVTKLASYR 105
G V+ I E ++ + +G++ AK D +AVG G+I D+T++ASY+
Sbjct: 75 GIDVENCILKEQGALTLLADEHGLGQLVIGAAKETDV----FLAVGAGTIHDLTRIASYK 130
Query: 106 SGIPFISFPTTASHDGIASANASIRGIEAKTSIKARPPIAVIADIEVIKTAPRRYLAAGV 165
G PFI+ PT S DG S A + K + + + PIA+ AD++ + APR +AAG
Sbjct: 131 FGKPFIAIPTAPSVDGFTSMGAPVIRDGVKITFQTQAPIALFADLDFLTQAPRSMVAAGF 190
Query: 166 GDVISNITAVRDWKLAHKLKGEYFSEYAAALSLMSAKMVIRDAEIIRLGNDEGVRKVIKA 225
GD++ T++ DW+++H L E F ++ + M + A+ I N++G+R + +A
Sbjct: 191 GDMLGKSTSLVDWQVSHMLNDEPFCPAVFHMTKSALTMCMEHADEIAACNEQGIRLLTEA 250
Query: 226 LISSGVAMSIAGSSRPASGAEHLFSHALDLLLDKPA----LHGEQTGIGTIIMAYLHGIN 281
LI SG+AM I G S PASGAEH SH ++ + LHG + G T++++ L+
Sbjct: 251 LIMSGLAMLIFGHSHPASGAEHHLSHYWEMAFLRSGGTQPLHGAKVGYATMLISALYKNE 310
Query: 282 WRKIKETLKTVGAP 295
RK ET + G+P
Sbjct: 311 ARKKIETFQGEGSP 324
>pir||T35279 probable dehydrogenase - Streptomyces coelicolor (fragment)
Length = 237
Score = 136 bits (340), Expect = 3e-31
Identities = 64/160 (40%), Positives = 108/160 (67%), Gaps = 2/160 (1%)
Query: 88 IAVGGGSIIDVTKLASYRSGIPFISFPTTASHDGIASANASIRGIEAKTSIKARPPIAVI 147
+ +GGG IID K A+ R G+P ++ PT +HDG+ S A++ + S PIAV+
Sbjct: 78 VGLGGGKIIDCAKFAAARIGLPLVAVPTNLAHDGLCSPVATLDNDAGRGSYGVPNPIAVV 137
Query: 148 ADIEVIKTAPRRYLAAGVGDVISNITAVRDWKLAHKLKGEYFSEYAAALSLMSAKMVIRD 207
D++VI+ AP R++ AG+GD +SN++A+ DW+LA+++KGE AAA++ + + V+R
Sbjct: 138 IDLDVIRAAPARFVRAGIGDAVSNVSAIADWELANRVKGEKIDGLAAAMARQAGEAVLRH 197
Query: 208 AEIIRLGNDEGVRKVIKALISSGVAMSIAGSSRPASGAEH 247
+G+++ ++ + +AL+ SG+AMS++G SRP+SGA H
Sbjct: 198 PG--GIGDNDFLQVLAEALVLSGIAMSVSGDSRPSSGACH 235
>pir||C72396 hypothetical protein TM0285 - Thermotoga maritima (strain MSB8)
>gi|4980783|gb|AAD35373.1|AE001710_8 (AE001710) araM
protein, putative [Thermotoga maritima]
Length = 403
Score = 118 bits (293), Expect = 9e-26
Identities = 71/211 (33%), Positives = 111/211 (51%), Gaps = 6/211 (2%)
Query: 67 AHIGEVEKVEAKIRDYNIKWAIAVGGGSIIDVTKLASYRSGIPFISFPTTASHDGIASAN 126
A + VEK+ D+ +++G GS+ D+ + A+Y SG F PT S D S
Sbjct: 68 ATMENVEKIVKASGDF--PEIVSIGSGSLTDIARYAAYLSGKRFSCVPTAPSVDAYTSTV 125
Query: 127 ASIRGIEAKTSIKARPPIAVIADIEVIKTAPRRYLAAGVGDVISNITAVRDWKLAHKLKG 186
A I K + A PP ++ DIEV++ AP L AGVGD+++ I A DW L+H + G
Sbjct: 126 APILVNGVKKTFMAIPPRRILLDIEVLRNAPMDLLRAGVGDIVAKIPARMDWILSHIVTG 185
Query: 187 EYFSEYAAALSLMSAKMVIRDAEIIRLGNDEGVRKVIKALISSGVAMSIAGSSRPASGAE 246
EY ++ K ++ ++ I ++ +I+A + SG+ M I G+SRPASGAE
Sbjct: 186 EYICDFVWDDMKDLLKEILLKSKDILNRERSAIKTLIEAHLVSGINMVIMGNSRPASGAE 245
Query: 247 HLFSHALDLLLDK----PALHGEQTGIGTII 273
H+ SH +++ ++ P HG IG +
Sbjct: 246 HMVSHLIEMFHEEKEEMPPFHGLTVMIGVFV 276
>gb|AAF24165.1|AF136281_2 (AF136281) glycerol dehydrogenase [Clostridium beijerinckii]
Length = 352
Score = 83.5 bits (203), Expect = 3e-15
Identities = 83/291 (28%), Positives = 128/291 (43%), Gaps = 28/291 (9%)
Query: 49 VKKAIRDEFDVYSITVK------KAHIGEVEKVEAKIRDYN-IKWAIAVGGGSIIDVTKL 101
VK I F+ +I VK + I EV ++ KI D N + I +GGG IID K
Sbjct: 40 VKDTIDKSFETKNIGVKYDLFNGECSITEVNRI-IKICDENQLTVLIGIGGGKIIDTIKA 98
Query: 102 ASYRSGIPFISFPTTASHDGIASANASI---RGIEAKTSIKARPPIAVIADIEVIKTAPR 158
Y + +P + PT A+ D SA + + G+ K + P V+ D +I AP
Sbjct: 99 VGYYANLPVVIVPTIAATDAPCSALSVLYTDDGVFDKYLFLKQNPNIVLVDTGIIAKAPV 158
Query: 159 RYLAAGVGDVISNITAVRDWKLAHKLKGEYFSE---YAAALSLMSAKMVIRDAEIIRLGN 215
R L +G+GD ++ R + ++ F A AL+ + +I + +L
Sbjct: 159 RLLVSGMGDALATYFEARACEKSNAGTCSIFGTTTITAQALARLCYDTLITEGYKAKLAV 218
Query: 216 DEGV-RKVIKALISSGVAMSIAGSSRPASGAEHLFSHALDLLLDKPA----LHGEQTGIG 270
+EGV K ++ ++ + +S G A H + L +L PA HGE+ G
Sbjct: 219 EEGVCTKSVEKIVEANTLLSGLGFESGGIAARHAIHNGLTVL---PACHHMYHGEKVAFG 275
Query: 271 TIIMAYLHGINWRKIKETL---KTVGAPTSAYELGID---PEIIIEALTIA 315
T+ L +I+E L VG P + +LGI+ PE IIE A
Sbjct: 276 TLAQLVLENAPMDEIEEVLDFSTRVGLPVTLKQLGINEIKPEEIIEVAKAA 326
>pir||G72378 glycerol dehydrogenase - Thermotoga maritima (strain MSB8)
>gi|4980929|gb|AAD35508.1|AE001721_7 (AE001721) glycerol
dehydrogenase [Thermotoga maritima]
Length = 364
Score = 81.1 bits (197), Expect = 2e-14
Identities = 81/342 (23%), Positives = 139/342 (39%), Gaps = 36/342 (10%)
Query: 6 FPREVILGKNLVPEVNNVIKRLKLESPGLVVYGPVTKKIAGESVKKAIRDEFDVYSITVK 65
FP + G + + + R E +V+ V K + GE+ + + V
Sbjct: 7 FPGRYVQGAGAINILEEELSRFG-ERAFVVIDDFVDKNVLGENFFSSFT------KVRVN 59
Query: 66 KAHIG------EVEKVEAKIRDYNIKWAIAVGGGSIIDVTKLASYRSGIPFISFPTTASH 119
K G E+E++ + + + +GGG +D K +Y+ P + PT AS
Sbjct: 60 KQIFGGECSDEEIERLSGLVEE-ETDVVVGIGGGKTLDTAKAVAYKLKKPVVIVPTIAST 118
Query: 120 DGIASANASI---RGIEAKTSIKARPPIAVIADIEVIKTAPRRYLAAGVGDVISNITAVR 176
D SA + I G + R P V+ D E++ AP R+L AG+GD A+
Sbjct: 119 DAPCSALSVIYTPNGEFKRYLFLPRNPDVVLVDTEIVAKAPARFLVAGMGD------ALA 172
Query: 177 DWKLAHKLKGEYFSEYAAALSLMSAKMVIR--DAEIIRLG-------NDEGVRKVIKALI 227
W A K +Y L M+A + R ++ G ++ V ++ ++
Sbjct: 173 TWFEAESCKQKYAPNMTGRLGSMTAYALARLCYETLLEYGVLAKRSVEEKSVTPALEKIV 232
Query: 228 SSGVAMSIAGSSRPASGAEHLFSHALDLLLD-KPALHGEQTGIGTIIMAYLHGINWRKIK 286
+ +S G A H + L +L + LHGE+ IG + +L + I+
Sbjct: 233 EANTLLSGLGFESGGLAAAHAIHNGLTVLENTHKYLHGEKVAIGVLASLFLTDKPRKMIE 292
Query: 287 ET---LKTVGAPTSAYELGIDPEIIIEALTIAHKIRPERYTI 325
E + VG PT+ E+G+D + + +A K + TI
Sbjct: 293 EVYSFCEEVGLPTTLAEIGLDGVSDEDLMKVAEKACDKNETI 334
>sp|P45511|GLDA_CITFR GLYCEROL DEHYDROGENASE (GLDH) >gi|493084|gb|AAB48844.1| (U09771)
glycerol dehydrogenase [Citrobacter freundii]
Length = 365
Score = 77.3 bits (187), Expect = 2e-13
Identities = 73/305 (23%), Positives = 127/305 (40%), Gaps = 16/305 (5%)
Query: 35 VVYGPVTKKIAGESVKKAIRDE---FDVYSITVKKAHIGEVEKVEAKIRDYNIKWAIAVG 91
V+ K+AGE V + + +HI E+ ++ A ++ + + + +G
Sbjct: 34 VIADDFVMKLAGEKVLNGLHSHDISCHAERFNGECSHI-EINRLIAILKQHGCRGVVGIG 92
Query: 92 GGSIIDVTKLASYRSGIPFISFPTTASHDGIASANASI---RGIEAKTSIKARPPIAVIA 148
GG +D K Y +P + PT AS D SA + I G + I + P V+
Sbjct: 93 GGKTLDTAKAIGYYQKLPVVVIPTIASTDAPTSALSVIYTEAGEFEEYLIYPKNPDMVVM 152
Query: 149 DIEVIKTAPRRYLAAGVGDVIS---NITAVRDWKLAHKLKGEYFSEYAAALSLMSAKMVI 205
D +I AP R L AG+GD +S A D + A + G + A +L+ + ++
Sbjct: 153 DTAIIAKAPVRLLVAGMGDALSTWFEAKACYDAR-ATSMAGGQSTVAALSLARLCYDTLL 211
Query: 206 RDAEIIRLGNDEG-VRKVIKALISSGVAMSIAGSSRPASGAEHLFSHALDLLLDKPAL-H 263
+ E R G V ++ ++ + +S G H + +L + L H
Sbjct: 212 AEGEKARFAAQAGVVTDALERIVEANTYLSGIGFESSGLAGAHAIHNGFTILEECHHLYH 271
Query: 264 GEQTGIGTIIMAYLHGINWRKIKETL---KTVGAPTSAYELGIDPEIIIEALTIAHKIRP 320
GE+ GT+ L +I+ L + VG P + E+G+ +I + + +A
Sbjct: 272 GEKVAFGTLAQLVLQNSPMEEIETVLNFCQKVGLPVTLAEMGVKDDIDGKIMAVAKATCA 331
Query: 321 ERYTI 325
E TI
Sbjct: 332 EGETI 336
>gb|AAC43051.1| (U00006) glycerol dehydrogenase [Escherichia coli]
Length = 380
Score = 71.8 bits (173), Expect = 1e-11
Identities = 77/340 (22%), Positives = 137/340 (39%), Gaps = 14/340 (4%)
Query: 3 LMEFPREVILGKNLVPEVNNVIKRLKLESPGLVVYGPVTKKIAGESVKKAIRDEFDVYSI 62
+++ P + I G +++ + +K L LVV A +V+K+ +D V I
Sbjct: 17 IIQSPGKYIQGADVINRLGEYLK--PLXERWLVVGDKFVLGFAQSTVEKSFKDAGLVVEI 74
Query: 63 TV--KKAHIGEVEKVEAKIRDYNIKWAIAVGGGSIIDVTKLASYRSGIPFISFPTTASHD 120
+ E++++ + +GGG +D K ++ G+P PT AS D
Sbjct: 75 APFGGECSQNEIDRLRGIAETAQCGAILGIGGGKTLDTAKALAHFMGVPVAIAPTIASTD 134
Query: 121 GIASANASIRGIEAKTS---IKARPPIAVIADIEVIKTAPRRYLAAGVGDVISNITAVRD 177
SA + I E + + P VI D +++ AP R LAAG+GD ++ R
Sbjct: 135 APCSALSVIYTDEGEFDRYLLLPNNPNMVIVDTKIVAGAPARLLAAGIGDALATWFEARA 194
Query: 178 WKL--AHKLKGEYFSEYAAALSLMSAKMVIRDAEIIRLGNDEG-VRKVIKALISSGVAMS 234
A + G ++ A AL+ + ++ + E L ++ V ++ +I + +S
Sbjct: 195 CSRSGATTMAGGKCTQAALALAELCYNTLLEEGEKAMLAAEQHVVTPALERVIEANTYLS 254
Query: 235 IAGSSRPASGAEHLFSHALDLLLD-KPALHGEQTGIGTIIMAYLHGINWRKIKETL---K 290
G A H + L + D HGE+ GT+ L +I+
Sbjct: 255 GVGFESGGLAAAHAVHNGLTAIPDAHHYYHGEKVAFGTLTQLVLENAPVEEIETVAALSH 314
Query: 291 TVGAPTSAYELGIDPEIIIEALTIAHKIRPERYTILGKEG 330
VG P + +L I ++ + +A E TI G
Sbjct: 315 AVGLPITLAQLDIKEDVPAKMRIVAEAACAEGETIHNMPG 354
>pir||D65201 glycerol dehydrogenase (EC 1.1.1.6) gldA - Escherichia coli
(strain K-12) >gi|1790381|gb|AAC76927.1| (AE000468)
glycerol dehydrogenase, (NAD) [Escherichia coli K12]
Length = 380
Score = 71.8 bits (173), Expect = 1e-11
Identities = 77/340 (22%), Positives = 137/340 (39%), Gaps = 14/340 (4%)
Query: 3 LMEFPREVILGKNLVPEVNNVIKRLKLESPGLVVYGPVTKKIAGESVKKAIRDEFDVYSI 62
+++ P + I G +++ + +K L LVV A +V+K+ +D V I
Sbjct: 17 IIQSPGKYIQGADVINRLGEYLK--PLAERWLVVGDKFVLGFAQSTVEKSFKDAGLVVEI 74
Query: 63 TV--KKAHIGEVEKVEAKIRDYNIKWAIAVGGGSIIDVTKLASYRSGIPFISFPTTASHD 120
+ E++++ + +GGG +D K ++ G+P PT AS D
Sbjct: 75 APFGGECSQNEIDRLRGIAETAQCGAILGIGGGKTLDTAKALAHFMGVPVAIAPTIASTD 134
Query: 121 GIASANASIRGIEAKTS---IKARPPIAVIADIEVIKTAPRRYLAAGVGDVISNITAVRD 177
SA + I E + + P VI D +++ AP R LAAG+GD ++ R
Sbjct: 135 APCSALSVIYTDEGEFDRYLLLPNNPNMVIVDTKIVAGAPARLLAAGIGDALATWFEARA 194
Query: 178 WKL--AHKLKGEYFSEYAAALSLMSAKMVIRDAEIIRLGNDEG-VRKVIKALISSGVAMS 234
A + G ++ A AL+ + ++ + E L ++ V ++ +I + +S
Sbjct: 195 CSRSGATTMAGGKCTQAALALAELCYNTLLEEGEKAMLAAEQHVVTPALERVIEANTYLS 254
Query: 235 IAGSSRPASGAEHLFSHALDLLLD-KPALHGEQTGIGTIIMAYLHGINWRKIKETL---K 290
G A H + L + D HGE+ GT+ L +I+
Sbjct: 255 GVGFESGGLAAAHAVHNGLTAIPDAHHYYHGEKVAFGTLTQLVLENAPVEEIETVAALSH 314
Query: 291 TVGAPTSAYELGIDPEIIIEALTIAHKIRPERYTILGKEG 330
VG P + +L I ++ + +A E TI G
Sbjct: 315 AVGLPITLAQLDIKEDVPAKMRIVAEAACAEGETIHNMPG 354
>sp|P32665|GLDA_ECOLI GLYCEROL DEHYDROGENASE (GLDH)
Length = 367
Score = 71.8 bits (173), Expect = 1e-11
Identities = 77/340 (22%), Positives = 137/340 (39%), Gaps = 14/340 (4%)
Query: 3 LMEFPREVILGKNLVPEVNNVIKRLKLESPGLVVYGPVTKKIAGESVKKAIRDEFDVYSI 62
+++ P + I G +++ + +K L LVV A +V+K+ +D V I
Sbjct: 4 IIQSPGKYIQGADVINRLGEYLK--PLAERWLVVGDKFVLGFAQSTVEKSFKDAGLVVEI 61
Query: 63 TV--KKAHIGEVEKVEAKIRDYNIKWAIAVGGGSIIDVTKLASYRSGIPFISFPTTASHD 120
+ E++++ + +GGG +D K ++ G+P PT AS D
Sbjct: 62 APFGGECSQNEIDRLRGIAETAQCGAILGIGGGKTLDTAKALAHFMGVPVAIAPTIASTD 121
Query: 121 GIASANASIRGIEAKTS---IKARPPIAVIADIEVIKTAPRRYLAAGVGDVISNITAVRD 177
SA + I E + + P VI D +++ AP R LAAG+GD ++ R
Sbjct: 122 APCSALSVIYTDEGEFDRYLLLPNNPNMVIVDTKIVAGAPARLLAAGIGDALATWFEARA 181
Query: 178 WKL--AHKLKGEYFSEYAAALSLMSAKMVIRDAEIIRLGNDEG-VRKVIKALISSGVAMS 234
A + G ++ A AL+ + ++ + E L ++ V ++ +I + +S
Sbjct: 182 CSRSGATTMAGGKCTQAALALAELCYNTLLEEGEKAMLAAEQHVVTPALERVIEANTYLS 241
Query: 235 IAGSSRPASGAEHLFSHALDLLLD-KPALHGEQTGIGTIIMAYLHGINWRKIKETL---K 290
G A H + L + D HGE+ GT+ L +I+
Sbjct: 242 GVGFESGGLAAAHAVHNGLTAIPDAHHYYHGEKVAFGTLTQLVLENAPVEEIETVAALSH 301
Query: 291 TVGAPTSAYELGIDPEIIIEALTIAHKIRPERYTILGKEG 330
VG P + +L I ++ + +A E TI G
Sbjct: 302 AVGLPITLAQLDIKEDVPAKMRIVAEAACAEGETIHNMPG 341
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.136 0.376
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 117968610
Number of Sequences: 2977
Number of extensions: 4684827
Number of successful extensions: 12192
Number of sequences better than 1.0e-10: 25
Number of HSP's better than 0.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 12138
Number of HSP's gapped (non-prelim): 30
length of query: 346
length of database: 189,106,746
effective HSP length: 59
effective length of query: 287
effective length of database: 153,796,013
effective search space: 44139455731
effective search space used: 44139455731
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)