BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1908 643535 643110 -142 !not a gene!
(142 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H71022 hypothetical protein PH1477 - Pyrococcus horikoshii ... 264 4e-70
pir||A64503 conserved hypothetical protein MJ1627 - Methanococcu... 113 8e-25
pir||H69180 conserved hypothetical protein MTH609 - Methanobacte... 104 5e-22
dbj|BAA13645.1| (D88555) orf1 [Methanobacterium thermoautotrophi... 87 7e-17
gi|11499737 conserved hypothetical protein [Archaeoglobus fulgid... 81 7e-15
emb|CAC12284.1| (AL445066) conserved hypothetical protein [Therm... 75 3e-13
>pir||H71022 hypothetical protein PH1477 - Pyrococcus horikoshii
>gi|3257901|dbj|BAA30584.1| (AP000006) 142aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 142
Score = 264 bits (667), Expect = 4e-70
Identities = 123/141 (87%), Positives = 133/141 (94%)
Query: 1 MVITLVGEKLAKPGLEFIYYGPGEPCKTCRLARVCIGNLEPGRRYKVIKVRNIEHPCPLH 60
MVITLVGEKLAKPGLEFIYYGPGEPCKTCRLARVCIGNLEPGRRYK+++VRNIEHPCPLH
Sbjct: 1 MVITLVGEKLAKPGLEFIYYGPGEPCKTCRLARVCIGNLEPGRRYKIVRVRNIEHPCPLH 60
Query: 61 EGKVRVVEVVEPAIEVLMEPRYAIAGSKLTLRFVDCNDPEKLDLVRPEGLFEGDTVKIIE 120
EGKVRVVEVVEPAIEVLMEPRYAI GSK+ L FV+CND +K +LVRPEGLFEGD VKI+E
Sbjct: 61 EGKVRVVEVVEPAIEVLMEPRYAIVGSKIKLSFVECNDDDKAELVRPEGLFEGDLVKILE 120
Query: 121 ILGDVECNGRKFKLVKVMREK 141
I+ DVEC GRK+KLVKVMREK
Sbjct: 121 IVDDVECGGRKYKLVKVMREK 141
>pir||A64503 conserved hypothetical protein MJ1627 - Methanococcus jannaschii
>gi|1500525|gb|AAB99644.1| (U67602) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 151
Score = 113 bits (281), Expect = 8e-25
Identities = 61/145 (42%), Positives = 88/145 (60%), Gaps = 6/145 (4%)
Query: 3 ITLVGEKLAKPGLEFIYYGPGEPCKTCRLARVCIGNLEPGRRYKVIKVRNIEHPCPLHEG 62
ITL+G KLAK G EFIY G E CK C+ R+C GNLE GR+YK++ VR+ HPC +HEG
Sbjct: 7 ITLIGSKLAKTGGEFIYLGEIEECKNCKFKRLCHGNLEVGRKYKIVSVRSANHPCIVHEG 66
Query: 63 KVRVVEVVEPAIEVLMEPRYAIAGSKLTLRFVDCN--DPEKLDLVRPEGLFEGDTVKIIE 120
V+VVEVV + +++E + A+ G L + C+ D E EG+ EG+ KI +
Sbjct: 67 GVKVVEVVLADLTIMIESKKALEGVVLNHEPITCDNFDCEYYSFCNSEGIKEGEKYKIKQ 126
Query: 121 ILGD-VEC---NGRKFKLVKVMREK 141
+L + + C N K +V+++ K
Sbjct: 127 VLNEKINCPFGNSLKKVIVELVENK 151
>pir||H69180 conserved hypothetical protein MTH609 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621689|gb|AAB85115.1| (AE000842) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 147
Score = 104 bits (257), Expect = 5e-22
Identities = 54/124 (43%), Positives = 79/124 (63%), Gaps = 2/124 (1%)
Query: 2 VITLVGEKLAKPGLEFIYYGPGEPCKTCRLARVCIGNLEPGRRYKVIKVRNIEHPCPLHE 61
+ITL+GEKLA+ G F++ GP E C+ CR CI LE GR Y + +V++ CP+H
Sbjct: 1 MITLIGEKLARKGSMFLFCGPAEKCRDCRFQPTCIAPLEEGRVYHINEVKDRYQRCPIHL 60
Query: 62 G-KVRVVEVVEPAIEVLMEPRYAIAGSKLTLRFVDCN-DPEKLDLVRPEGLFEGDTVKII 119
G +VRVV+V + IEVL++ + A GS ++ F DC+ + DL PEG+ EGD +I+
Sbjct: 61 GERVRVVDVEKANIEVLIDSKRAFEGSVISFEFPDCDVECSMRDLCFPEGVMEGDRCRIV 120
Query: 120 EILG 123
+ LG
Sbjct: 121 KNLG 124
>dbj|BAA13645.1| (D88555) orf1 [Methanobacterium thermoautotrophicum]
Length = 133
Score = 87.4 bits (213), Expect = 7e-17
Identities = 45/109 (41%), Positives = 67/109 (61%), Gaps = 2/109 (1%)
Query: 17 FIYYGPGEPCKTCRLARVCIGNLEPGRRYKVIKVRNIEHPCPLHEG-KVRVVEVVEPAIE 75
F++ GP E C+ CR CI LE GR Y + +V++ CP+H G +VRVV+V + IE
Sbjct: 2 FLFCGPAEKCRDCRFQPTCIAPLEEGRVYHINEVKDRYQRCPIHLGERVRVVDVEKANIE 61
Query: 76 VLMEPRYAIAGSKLTLRFVDCN-DPEKLDLVRPEGLFEGDTVKIIEILG 123
VL++ + A GS ++ F DC+ + DL PEG+ EGD +I++ LG
Sbjct: 62 VLIDSKRAFEGSVISFEFPDCDVECSMRDLCFPEGVMEGDRCRIVKNLG 110
>gi|11499737 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7451015|pir||B69519 conserved hypothetical protein
AF2154 - Archaeoglobus fulgidus
>gi|2648360|gb|AAB89086.1| (AE000955) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 163
Score = 80.8 bits (196), Expect = 7e-15
Identities = 49/146 (33%), Positives = 80/146 (54%), Gaps = 6/146 (4%)
Query: 2 VITLVGEKLAKPGLEFIYYGPGEPCKTCRLARVCIGNLEPGRRYKVIKVRN-IEHPCPLH 60
+ITL G+ AK G+EFI+ G + C+ C++ + C+ L+ G +YK++ +R+ CPLH
Sbjct: 18 IITLCGKDWAKIGVEFIFLGGKQECENCKIKKTCL-KLKEGAKYKIVGLRDGAVQECPLH 76
Query: 61 EGKVRVVEVVEPAIEVLMEPRYAIAGSKL--TLRFVDCNDPEKLDLVRPEGLFEGDTVKI 118
+ V VEVVE I L++ + A+ G+K+ R D D L P L G+TV +
Sbjct: 77 DEGVVAVEVVELPIIALVDSKIAVEGAKIHYEQRKCDVYDCSMYSLCHPIELNNGETVIV 136
Query: 119 IEILGDV--ECNGRKFKLVKVMREKE 142
+++GD +C +V +R E
Sbjct: 137 EKVIGDAPEQCRKGHSVIVAELRRAE 162
>emb|CAC12284.1| (AL445066) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 148
Score = 75.3 bits (182), Expect = 3e-13
Identities = 52/144 (36%), Positives = 80/144 (55%), Gaps = 14/144 (9%)
Query: 3 ITLVGEKLAKPGLEFIYYGPGEPCKTCRLARVCIGNLEPGRRYKVIKVRNIEHPCPLHEG 62
I+L+G +AK GLEF++ GP C CR+ VC NLE G RY+V KVR +PC + G
Sbjct: 7 ISLIGSNIAKEGLEFVFAGPLAACSDCRVKNVCF-NLEQGHRYRVTKVREQVNPCIIFNG 65
Query: 63 -KVRVVEVVEPAIEV-LMEPRYAIAGSKLTLR-----FVDCNDPEKLDLVRPEGLFEGDT 115
KV VEV E V + E + G+ +TL+ ++ C + EK +L F+ D+
Sbjct: 66 DKVNTVEVEELEDYVNVQESKRIQEGAIITLKSMNCDYITCPNIEKCNLY----YFKPDS 121
Query: 116 VKIIEILG-DVEC-NGRKFKLVKV 137
+++ +G +++C G K K V +
Sbjct: 122 KVMVKSIGKEIKCPKGYKMKQVAI 145
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.322 0.145 0.437
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55554433
Number of Sequences: 2977
Number of extensions: 2257105
Number of successful extensions: 3878
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3867
Number of HSP's gapped (non-prelim): 6
length of query: 142
length of database: 189,106,746
effective HSP length: 49
effective length of query: 93
effective length of database: 159,780,883
effective search space: 14859622119
effective search space used: 14859622119
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 161 (67.1 bits)