BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1911 640191 639760 -144 !not a gene!
         (144 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C71023 hypothetical protein PH1480 - Pyrococcus horikoshii ...   133  8e-31

>pir||C71023 hypothetical protein PH1480 - Pyrococcus horikoshii
           >gi|3257904|dbj|BAA30587.1| (AP000006) 130aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 130
           
 Score =  133 bits (332), Expect = 8e-31
 Identities = 69/119 (57%), Positives = 78/119 (64%)

Query: 20  HFQPYWLKNFFLSLFIVPDTPRVLMISLLPLKSVASIRANLKCSTYSLSHLTIPVFVFGS 79
           HF PY+ KNF  SLFIVP+TP VL+ISLLPL S  SI ANL+ STYS SHLTIPVFV GS
Sbjct: 5   HFHPYFAKNFLFSLFIVPETPSVLIISLLPLNSETSINANLRYSTYSRSHLTIPVFVLGS 64

Query: 80  YFMNHGLANAVPSSPRTLSEASHIRXXXXXXXXXXXXXXXKAMYLFLSLSVGGKVLSFI 138
            F++ GL  AVP SP T  E  H+                 AMYLFLSL VGG+V SF+
Sbjct: 65  NFISQGLTIAVPVSPSTSKELFHMSSLTSSFVKSPSLIISNAMYLFLSLRVGGRVFSFL 123


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.327    0.138    0.422 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38792378
Number of Sequences: 2977
Number of extensions: 1088885
Number of successful extensions: 2732
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2731
Number of HSP's gapped (non-prelim): 1
length of query: 144
length of database: 189,106,746
effective HSP length: 50
effective length of query: 94
effective length of database: 159,182,396
effective search space: 14963145224
effective search space used: 14963145224
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 161 (67.1 bits)