BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1913 638304 637939 -122 !not a gene!
         (122 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAB98307.1| (U67486) conserved hypothetical protein [Methanoc...    98  4e-20
pir||B72570 hypothetical protein APE1843 - Aeropyrum pernix (str...    82  3e-15
pir||S38467 hypothetical protein B193 - Desulfurococcus mobilis ...    80  1e-14

>gb|AAB98307.1| (U67486) conserved hypothetical protein [Methanococcus jannaschii]
           Length = 89
           
 Score = 97.9 bits (240), Expect = 4e-20
 Identities = 51/82 (62%), Positives = 60/82 (72%)

Query: 41  ITIPAAMVIPMSLIANLPSCGSSLTGSRTTGFIGLRTTIAESPVLMNCGFSSVMLPVLGS 100
           I IPAA+VIP+SLIANLP+CG SLT S T GF+GL  TIA SPV  NCGFSS+  PVLGS
Sbjct: 8   IAIPAAIVIPISLIANLPNCGISLTFSMTIGFVGLILTIAASPVFKNCGFSSMTCPVLGS 67

Query: 101 ILASNCSNLTGTWAVWACRTGL 122
              +N  N+  T AV A +TG+
Sbjct: 68  NFFNNSMNVHATCAVCAWKTGV 89


>pir||B72570 hypothetical protein APE1843 - Aeropyrum pernix (strain K1)
           >gi|5105534|dbj|BAA80847.1| (AP000062) 101aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 101
           
 Score = 81.5 bits (198), Expect = 3e-15
 Identities = 45/82 (54%), Positives = 51/82 (61%)

Query: 41  ITIPAAMVIPMSLIANLPSCGSSLTGSRTTGFIGLRTTIAESPVLMNCGFSSVMLPVLGS 100
           +TIP   V+ MSL+ANLPS G SL  S T+GF GL  T+A SP L NCGF S   PV GS
Sbjct: 20  VTIPMPTVLFMSLMANLPSWGISLNFSTTSGFTGLNLTMAASPALRNCGFCSTTWPVFGS 79

Query: 101 ILASNCSNLTGTWAVWACRTGL 122
            LA     L  T AVW C TG+
Sbjct: 80  SLALISIILELTLAVWTCITGV 101


>pir||S38467 hypothetical protein B193 - Desulfurococcus mobilis
           >gi|410442|emb|CAA51987.1| (X73582) ORFB 193
           [Desulfurococcus mobilis]
           Length = 193
           
 Score = 80.0 bits (194), Expect = 1e-14
 Identities = 45/85 (52%), Positives = 51/85 (59%)

Query: 38  WIEITIPAAMVIPMSLIANLPSCGSSLTGSRTTGFIGLRTTIAESPVLMNCGFSSVMLPV 97
           +I  T P  +V+PMSLIANLP    S   S T+G IGL  TIA SP    CGF S+ LPV
Sbjct: 7   FISSTWPIPIVLPMSLIANLPRPWKSEYFSTTSGLIGLNFTIAMSPCFRKCGFFSISLPV 66

Query: 98  LGSILASNCSNLTGTWAVWACRTGL 122
           LGSI A     L  T AVW C TG+
Sbjct: 67  LGSIFAMISVILQATLAVWTCITGV 91


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.135    0.421 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42193604
Number of Sequences: 2977
Number of extensions: 1453995
Number of successful extensions: 4425
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4421
Number of HSP's gapped (non-prelim): 3
length of query: 122
length of database: 189,106,746
effective HSP length: 50
effective length of query: 72
effective length of database: 159,182,396
effective search space: 11461132512
effective search space used: 11461132512
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 160 (66.7 bits)