BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1914 637824 637435 -130 !not a gene!
         (130 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H71023 hypothetical protein PH1485 - Pyrococcus horikoshii ...   177  4e-44

>pir||H71023 hypothetical protein PH1485 - Pyrococcus horikoshii
           >gi|3257909|dbj|BAA30592.1| (AP000006) 156aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 156
           
 Score =  177 bits (445), Expect = 4e-44
 Identities = 89/130 (68%), Positives = 93/130 (71%)

Query: 1   MMSFLLTPLTLNPMLSPGRASCSGSWCISMLLTSPCIGLWKIVDAGSKIXXXXXXXXXXX 60
           ++SFLLTPLTLNPMLSPGRAS  GSWCISMLLTSPCIGLWKIVDAGSKI           
Sbjct: 27  LISFLLTPLTLNPMLSPGRASWRGSWCISMLLTSPCIGLWKIVDAGSKITTSPTLSLPVS 86

Query: 61  XXXXXXVPTPLIEYTSWXXXXXXXXXXXXXXXXWSRASMRVGPLYHGILSLFLTMLSPFQ 120
                 VPTPLIEYTSW                WSRAS+RVGPLY GILSLFLT LSPFQ
Sbjct: 87  TLPTGTVPTPLIEYTSWMGILSGLSMGFSGSGIWSRASIRVGPLYQGILSLFLTTLSPFQ 146

Query: 121 ALVGMTGKSL 130
           ALVG+TGKSL
Sbjct: 147 ALVGITGKSL 156


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.137    0.451 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37663889
Number of Sequences: 2977
Number of extensions: 1022841
Number of successful extensions: 2174
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2173
Number of HSP's gapped (non-prelim): 1
length of query: 130
length of database: 189,106,746
effective HSP length: 47
effective length of query: 83
effective length of database: 160,977,857
effective search space: 13361162131
effective search space used: 13361162131
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 161 (67.1 bits)