BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1915 637300 636896 -135 !not a gene!
         (135 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A71024 hypothetical protein PH1486 - Pyrococcus horikoshii ...   116  9e-26

>pir||A71024 hypothetical protein PH1486 - Pyrococcus horikoshii
           >gi|3257910|dbj|BAA30593.1| (AP000006) 125aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 125
           
 Score =  116 bits (289), Expect = 9e-26
 Identities = 54/94 (57%), Positives = 66/94 (69%)

Query: 35  VTWSVNDRDVPVWGLELGVSNVDGDTPFSLLLKPVHDPSEXXXXXXXXXXXXXXXXXXWD 94
           +T S++D +VPVW  +LGVSN+D +T FSL LKP+HDPSE                  W+
Sbjct: 1   MTRSIDDGNVPVWSFKLGVSNIDRNTSFSLFLKPIHDPSELEGLTLFAHLLELLDDCLWN 60

Query: 95  VPGVVEEPSDGRALSVVYVSDKHDVNVGLLLWHL 128
           VP +++EPSD RALSVVYV DKHDVNVGLLLWHL
Sbjct: 61  VPSIIKEPSDCRALSVVYVPDKHDVNVGLLLWHL 94


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.139    0.454 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52378755
Number of Sequences: 2977
Number of extensions: 1913569
Number of successful extensions: 3100
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3098
Number of HSP's gapped (non-prelim): 1
length of query: 135
length of database: 189,106,746
effective HSP length: 47
effective length of query: 88
effective length of database: 160,977,857
effective search space: 14166051416
effective search space used: 14166051416
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 161 (67.1 bits)