BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1916 (lplA-like) DE:LIPOATE-PROTEIN LIGASE A RELATED
(249 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75110 lipoate-protein ligase A related PAB1916 - Pyrococcu... 491 e-138
pir||B71024 probable lipoate protein ligase - Pyrococcus horikos... 433 e-121
dbj|BAB06531.1| (AP001516) lipoate protein ligase [Bacillus halo... 153 2e-36
pir||T46683 probable lipoate protein ligase snoP [imported] - St... 150 1e-35
pir||D69959 conserved hypothetical protein yqhM - Bacillus subti... 150 1e-35
pir||T28693 hypothetical protein - Streptomyces coelicolor >gi|3... 146 2e-34
pir||C70441 lipoate-protein ligase A - Aquifex aeolicus >gi|2983... 136 2e-31
pir||G69830 lipoate-protein ligase homolog yhfJ - Bacillus subti... 129 2e-29
dbj|BAB04402.1| (AP001509) lipoate-protein ligase [Bacillus halo... 129 2e-29
gb|AAK43260.1| Lipoate-protein ligase A (lplA-2) [Sulfolobus so... 122 4e-27
emb|CAC11654.1| (AL445064) lipoate protein ligase related protei... 121 9e-27
pir||C72462 hypothetical protein APE2342 - Aeropyrum pernix (str... 111 8e-24
gb|AAK41323.1| Lipoate protein ligase A, hypothetical (lplA-like... 111 1e-23
sp|P75394|LPLA_MYCPN PROBABLE LIPOATE-PROTEIN LIGASE A >gi|21463... 110 2e-23
gb|AAG18796.1| (AE004984) lipoate protein ligase; Lpl [Halobacte... 110 2e-23
gb|AAK41369.1| Lipoate protein ligase A, hypothetical (lplA-like... 106 3e-22
gb|AAC44341.1| (U62057) lipoate-protein ligase [Mycoplasma capri... 103 2e-21
sp|P47512|LPLA_MYCGE PROBABLE LIPOATE-PROTEIN LIGASE A >gi|13615... 101 7e-21
pir||A70467 hypothetical protein aq_1952 - Aquifex aeolicus >gi|... 99 3e-20
gb|AAK43257.1| Lipoate-protein ligase A (lplA-1) [Sulfolobus sol... 94 1e-18
sp|P54511|YQHM_BACSU HYPOTHETICAL 22.8 KD PROTEIN IN GCVT-SPOIII... 90 2e-17
sp|Q9Y9E6|LIPB_AERPE PROBABLE LIPOATE-PROTEIN LIGASE B (LIPOATE ... 89 4e-17
sp|P32099|LPLA_ECOLI LIPOATE-PROTEIN LIGASE A >gi|625729|pir||A5... 87 3e-16
gb|AAG20904.1| (AE005157) lipoate protein ligase; LipB [Halobact... 78 1e-13
pir||T39701 Lipoate-protein ligase A - fission yeast (Schizosac... 74 1e-12
pir||B70324 hypothetical protein aq_264 - Aquifex aeolicus >gi|2... 69 4e-11
pir||E82204 lipoate-protein ligase A VC1388 [imported] - Vibrio ... 69 6e-11
>pir||B75110 lipoate-protein ligase A related PAB1916 - Pyrococcus abyssi
(strain Orsay) >gi|5458106|emb|CAB49595.1| (AJ248285)
LIPOATE-PROTEIN LIGASE A RELATED [Pyrococcus abyssi]
Length = 249
Score = 491 bits (1251), Expect = e-138
Identities = 249/249 (100%), Positives = 249/249 (100%)
Query: 1 MRFIPLIVARPELQMAIDEAILIARSEGKVPDTVRLYVFKPSSVTIGRFQSVRHDVDIEK 60
MRFIPLIVARPELQMAIDEAILIARSEGKVPDTVRLYVFKPSSVTIGRFQSVRHDVDIEK
Sbjct: 1 MRFIPLIVARPELQMAIDEAILIARSEGKVPDTVRLYVFKPSSVTIGRFQSVRHDVDIEK 60
Query: 61 ARELNIPVVRRITGGGSVFHDEFGEITYSVVISDDYHPSLKNIQESYRFLAGPLVDALKD 120
ARELNIPVVRRITGGGSVFHDEFGEITYSVVISDDYHPSLKNIQESYRFLAGPLVDALKD
Sbjct: 61 ARELNIPVVRRITGGGSVFHDEFGEITYSVVISDDYHPSLKNIQESYRFLAGPLVDALKD 120
Query: 121 LGLNAGFSGLNDIVVNGKKISGSAQTRRKGIILQHGTFMYSTRLEVLASVLKVSKEKLRD 180
LGLNAGFSGLNDIVVNGKKISGSAQTRRKGIILQHGTFMYSTRLEVLASVLKVSKEKLRD
Sbjct: 121 LGLNAGFSGLNDIVVNGKKISGSAQTRRKGIILQHGTFMYSTRLEVLASVLKVSKEKLRD 180
Query: 181 KGIRSIYERVTTLEREGIKLSMQETYELLRNSFFRAFPLEEGELTEYELELAQELVEERY 240
KGIRSIYERVTTLEREGIKLSMQETYELLRNSFFRAFPLEEGELTEYELELAQELVEERY
Sbjct: 181 KGIRSIYERVTTLEREGIKLSMQETYELLRNSFFRAFPLEEGELTEYELELAQELVEERY 240
Query: 241 GKDEWNFMK 249
GKDEWNFMK
Sbjct: 241 GKDEWNFMK 249
>pir||B71024 probable lipoate protein ligase - Pyrococcus horikoshii
>gi|3257911|dbj|BAA30594.1| (AP000006) 249aa long
hypothetical lipoate protein ligase [Pyrococcus
horikoshii]
Length = 249
Score = 433 bits (1102), Expect = e-121
Identities = 211/249 (84%), Positives = 235/249 (93%)
Query: 1 MRFIPLIVARPELQMAIDEAILIARSEGKVPDTVRLYVFKPSSVTIGRFQSVRHDVDIEK 60
MRFIPLIVARPE+QMAIDEAILIARSEG+VPDTVRLYVFKPSSVTIGRFQSVR+DV++EK
Sbjct: 1 MRFIPLIVARPEVQMAIDEAILIARSEGRVPDTVRLYVFKPSSVTIGRFQSVRYDVNLEK 60
Query: 61 ARELNIPVVRRITGGGSVFHDEFGEITYSVVISDDYHPSLKNIQESYRFLAGPLVDALKD 120
A+EL IPVVRRITGGGSVFHDE+GEITYSVVIS+DYHP LKNIQ+SYRFLAGPLVDALKD
Sbjct: 61 AKELGIPVVRRITGGGSVFHDEYGEITYSVVISEDYHPMLKNIQDSYRFLAGPLVDALKD 120
Query: 121 LGLNAGFSGLNDIVVNGKKISGSAQTRRKGIILQHGTFMYSTRLEVLASVLKVSKEKLRD 180
LG+ A FSGLNDIVV GKKISGSAQTRR+GIILQHGT MY+TRLE+L SVLKVSKEKL+D
Sbjct: 121 LGIEAEFSGLNDIVVRGKKISGSAQTRRRGIILQHGTLMYATRLEILGSVLKVSKEKLKD 180
Query: 181 KGIRSIYERVTTLEREGIKLSMQETYELLRNSFFRAFPLEEGELTEYELELAQELVEERY 240
KG++SI+ERVTTLEREGIK+ E YE+LRNSFFRAFPL+EGELTEYELEL ++L+EERY
Sbjct: 181 KGVKSIFERVTTLEREGIKVGRNEMYEVLRNSFFRAFPLDEGELTEYELELVEKLIEERY 240
Query: 241 GKDEWNFMK 249
G D+WNF K
Sbjct: 241 GNDKWNFQK 249
>dbj|BAB06531.1| (AP001516) lipoate protein ligase [Bacillus halodurans]
Length = 276
Score = 153 bits (383), Expect = 2e-36
Identities = 88/274 (32%), Positives = 152/274 (55%), Gaps = 28/274 (10%)
Query: 2 RFIPLIVARPELQMAIDEAILIARSEGKVPDTVRLYVFKPSSVTIGRFQSVRHDVDIEKA 61
RFI P MA+DEA+L SEG +P T+R Y + P +++IG FQ V+ ++++E
Sbjct: 5 RFIDSGDRDPAYNMALDEALLNWHSEGLIPPTIRFYGWNPPTLSIGYFQKVQKEINMEMV 64
Query: 62 RELNIPVVRRITGGGSVFHDEFGEITYSVVISDDYHPSLKNIQESYRFLAGPLVDALKDL 121
+ + VRR TGG V HD+ E+TYSV++++++ ++ E+YR ++ +++ +DL
Sbjct: 65 EKHQLGFVRRPTGGRGVLHDK--ELTYSVIVTEEHPDMPASVTEAYRIISQGILEGFRDL 122
Query: 122 GLNAGFS-----------------------GLNDIVVNGKKISGSAQTRRKGIILQHGTF 158
GL+A F+ ++VV G+K++GSAQTR+KG+ILQHG+
Sbjct: 123 GLDAYFAVPKTEEEKNALKNPRSAVCFDAPSWYELVVEGRKVAGSAQTRQKGVILQHGSI 182
Query: 159 MYSTRLEVLASVLKVSKEKLRDKGIRSIYERVTTL-EREGIKLSMQETYELLRNSFFR-- 215
+ + L + E++R++ R+ + + E + LSM+E + ++ F +
Sbjct: 183 VLDIDEDKLFDLFNYPSERVRERMQRNFKNKAVPINELRDVPLSMEEVKKAFKDGFEKGL 242
Query: 216 AFPLEEGELTEYELELAQELVEERYGKDEWNFMK 249
+ LE LT+ E +++ +ERY DEWNF K
Sbjct: 243 SIKLEPYTLTDAEEAEVKQIAKERYETDEWNFRK 276
>pir||T46683 probable lipoate protein ligase snoP [imported] - Streptomyces
nogalater >gi|6093260|emb|CAB59005.1| (AJ224512) SnoP
[Streptomyces nogalater]
Length = 354
Score = 150 bits (376), Expect = 1e-35
Identities = 88/241 (36%), Positives = 137/241 (56%), Gaps = 8/241 (3%)
Query: 11 PELQMAIDEAILIARSEGKVPDTVRLYVFKPSSVTIGRFQSVRHDVDIEKARELNIPVVR 70
P L MA+DE + + G+ P T+R++ + +V IG FQS+R++VD E A + VVR
Sbjct: 111 PALHMALDEVLTAEVAAGRRPPTLRVWEWGAPAVIIGSFQSLRNEVDAEGAARHGVEVVR 170
Query: 71 RITGGGSVFHDEFGEITYSVVISDDYHPSLKNIQESYRFLAGPLVDALKDLGLNAGFSGL 130
RI+GGG++F + ITYS+ + + L + Q+SY +L ++ AL DLG+ A + L
Sbjct: 171 RISGGGAMFVEPGNTITYSLSVPESLVQGL-SFQDSYAYLDDWVLGALGDLGIRAWYQPL 229
Query: 131 NDIVVNGKKISGSAQTR------RKGIILQHGTFMYSTRLEVLASVLKVSKEKLRDKGIR 184
NDI + KI+G+AQ R G +L H T Y + + VL++ +EKL DKG +
Sbjct: 230 NDIATDQGKIAGAAQKRVVGPGGGPGAVLHHVTMSYDIDADKMVEVLRIGREKLSDKGTK 289
Query: 185 SIYERVTTLEREGIKLSMQETYELLRNSFFRAFPLEEGELTEYELELAQELVEERYGKDE 244
S +RV L R+ L + + + SF + L EG++T+ EL A+EL ++G E
Sbjct: 290 SAKKRVDPLRRQ-TGLPREAVIDRMIESFRARYGLAEGKVTDEELARAEELARTKFGSTE 348
Query: 245 W 245
W
Sbjct: 349 W 349
>pir||D69959 conserved hypothetical protein yqhM - Bacillus subtilis
>gi|2634887|emb|CAB14384.1| (Z99116) similar to
hypothetical proteins from B. subtilis [Bacillus
subtilis]
Length = 278
Score = 150 bits (375), Expect = 1e-35
Identities = 84/274 (30%), Positives = 148/274 (53%), Gaps = 28/274 (10%)
Query: 2 RFIPLIVARPELQMAIDEAILIARSEGKVPDTVRLYVFKPSSVTIGRFQSVRHDVDIEKA 61
RFI A P MA+DEA+L SE K+P +R Y + P+++++G FQ+++ +++ E
Sbjct: 7 RFIDSGNASPAFNMALDEALLYWHSEKKIPPVIRFYGWNPATLSVGYFQNIKKEINFEAV 66
Query: 62 RELNIPVVRRITGGGSVFHDEFGEITYSVVISDDYHPSLKNIQESYRFLAGPLVDALKDL 121
+ N+ VRR TGG V HD+ E+TYSV++S+++ + E+YR ++ ++ ++L
Sbjct: 67 HKYNLGFVRRPTGGRGVLHDQ--ELTYSVIVSEEHPEMPATVTEAYRVISEGILQGFRNL 124
Query: 122 GLNAGFS-----------------------GLNDIVVNGKKISGSAQTRRKGIILQHGTF 158
GL+A F+ ++VV G+K++GSAQTR+KG+ILQHG+
Sbjct: 125 GLDAYFAIPRTEKEKESLKNPRSSVCFDAPSWYELVVEGRKVAGSAQTRQKGVILQHGSI 184
Query: 159 MYSTRLEVLASVLKVSKEKLRDKGIRSIYERVTTL-EREGIKLSMQETYELLRNSFFRA- 216
+ + L + E++R++ R+ + + E +++M E + + F
Sbjct: 185 LLDLDEDKLFDLFLYPSERVRERMQRNFKNKAVAINELIEKRVTMDEARKAFKEGFETGL 244
Query: 217 -FPLEEGELTEYELELAQELVEERYGKDEWNFMK 249
LE EL++ EL+ L E +Y DEWN+ +
Sbjct: 245 NIHLEPYELSQEELDFVHHLAETKYASDEWNYKR 278
>pir||T28693 hypothetical protein - Streptomyces coelicolor
>gi|3127844|emb|CAA18910.1| (AL023496) hypothetical
protein [Streptomyces coelicolor A3(2)]
Length = 388
Score = 146 bits (365), Expect = 2e-34
Identities = 86/241 (35%), Positives = 138/241 (56%), Gaps = 8/241 (3%)
Query: 11 PELQMAIDEAILIARSEGKVPDTVRLYVFKPSSVTIGRFQSVRHDVDIEKARELNIPVVR 70
P L MA+DE + + G+ P T+R++ + +V IG FQS+R++VD E A I VVR
Sbjct: 145 PALHMALDEVLTAEVAAGRRPPTLRVWEWGAPAVIIGSFQSLRNEVDAEGAARHGIEVVR 204
Query: 71 RITGGGSVFHDEFGEITYSVVISDDYHPSLKNIQESYRFLAGPLVDALKDLGLNAGFSGL 130
RI+GGG++F + ITYS+ + + L + Q+SY +L ++ AL ++G+ A + L
Sbjct: 205 RISGGGAMFVEPGNTITYSLSVPEALVQGL-SFQDSYAYLDDWVLGALGEMGIRAWYQPL 263
Query: 131 NDIVVNGKKISGSAQTR------RKGIILQHGTFMYSTRLEVLASVLKVSKEKLRDKGIR 184
NDI + KI+G+AQ R G +L H T Y + + VL++ +EK+ DKG +
Sbjct: 264 NDIATDQGKIAGAAQKRVVGPGGGPGAVLHHVTMSYDIDADKMLQVLRIGREKMSDKGTK 323
Query: 185 SIYERVTTLEREGIKLSMQETYELLRNSFFRAFPLEEGELTEYELELAQELVEERYGKDE 244
S +RV L R+ L+ + E + +SF + L G++T+ ELE A+EL ++ E
Sbjct: 324 SAKKRVDPLRRQ-TGLAREAVIERMISSFGGRYGLSRGKVTDEELERARELARTKFSSAE 382
Query: 245 W 245
W
Sbjct: 383 W 383
>pir||C70441 lipoate-protein ligase A - Aquifex aeolicus
>gi|2983965|gb|AAC07512.1| (AE000748) lipoate-protein
ligase A [Aquifex aeolicus]
Length = 788
Score = 136 bits (339), Expect = 2e-31
Identities = 86/234 (36%), Positives = 130/234 (54%), Gaps = 6/234 (2%)
Query: 15 MAIDEAILIARSEGKVPDTVRLYVFKPSSVTIGRFQSVRHDVDIEKARELNIPVVRRITG 74
MA+D +L +SEGK+P+T+R FKP V IG Q+V +V +E + I V RRITG
Sbjct: 78 MALDSVLLELKSEGKIPNTIRFLQFKPECVLIGYHQAVEQEVRLEYVQREGIEVNRRITG 137
Query: 75 GGSVFHDEFGEITYSVVISDDYHPSLKNIQESYRFLAGPLVDALKDLGLNAGFSGLNDIV 134
GG+++ DE +I + +I+D K+ ++ R + + AL+ LG+NA F NDI
Sbjct: 138 GGAIYFDEL-QIGWE-IIADRESFGNKSYEKITRTICETVAKALRKLGVNAQFRPRNDIE 195
Query: 135 VNGKKISGSAQTRRKGIILQHGTFMYSTRLEVLASVLKVSKEKLRDKGIRSIYERVTTLE 194
V GKKISG+ L GT + LE + L++ EKL KGI+S +R+T ++
Sbjct: 196 VEGKKISGTGGVFEGNAFLYQGTILMDVNLERMLKSLQIPVEKLTSKGIKSAEDRITWVK 255
Query: 195 RE-GIKLSMQETYELLRNSFFRAFPLEE--GELTEYELELAQELVEERYGKDEW 245
RE G +E + + + +E GELT+ ELEL +E ++ + DEW
Sbjct: 256 REIGRLPEKEEVFNAILEALKEELGIEPYWGELTKEELELFEE-KKDYFKSDEW 308
>pir||G69830 lipoate-protein ligase homolog yhfJ - Bacillus subtilis
>gi|2226243|emb|CAA74531.1| (Y14083) hypothetical
protein [Bacillus subtilis] >gi|2633361|emb|CAB12865.1|
(Z99109) similar to lipoate-protein ligase [Bacillus
subtilis]
Length = 331
Score = 129 bits (322), Expect = 2e-29
Identities = 82/241 (34%), Positives = 133/241 (55%), Gaps = 13/241 (5%)
Query: 11 PELQMAIDEAILIARSEGKVPDTVRLYVFKPSSVTIGRFQSVRHDVDIEKARELNIPVVR 70
P + +AI+E + + + YV +PS + IG+ Q+ +++ + E I VVR
Sbjct: 12 PRINLAIEEYCV--KHLDPEQQYLLFYVNQPS-IIIGKNQNTIEEINTKYVEENGIIVVR 68
Query: 71 RITGGGSVFHDEFGEITYSVVISDDYHPSLKNIQESYRFLAGPLVDALKDLGLNAGFSGL 130
R++GGG+V+HD G + +S + DD + +++ P++ AL LG+ A SG
Sbjct: 69 RLSGGGAVYHD-LGNLNFSFITKDD-----GDSFHNFKKFTEPVIQALHQLGVEAELSGR 122
Query: 131 NDIVVNGKKISGSAQTRRKGIILQHGTFMYSTRLEVLASVLKVSKEKLRDKGIRSIYERV 190
NDIVV+G+KISG+AQ KG I HGT M+ + ++ + S LKV K+K+ KGI+SI RV
Sbjct: 123 NDIVVDGRKISGNAQFATKGRIFSHGTLMFDSAIDHVVSALKVKKDKIESKGIKSIRSRV 182
Query: 191 TTL-EREGIKLSMQETYELLRNSFFRAFP---LEEGELTEYELELAQELVEERYGKDEWN 246
+ E K++ +E L F + E +LTE + E ++ +ERY +WN
Sbjct: 183 ANISEFLDDKMTTEEFRSHLLRHIFNTNDVGNVPEYKLTEKDWETIHQISKERYQNWDWN 242
Query: 247 F 247
+
Sbjct: 243 Y 243
>dbj|BAB04402.1| (AP001509) lipoate-protein ligase [Bacillus halodurans]
Length = 330
Score = 129 bits (322), Expect = 2e-29
Identities = 84/245 (34%), Positives = 132/245 (53%), Gaps = 12/245 (4%)
Query: 8 VARPELQMAIDEAILIARSEGKVPDTVRLYVFKPSSVTIGRFQSVRHDVDIEKARELNIP 67
+ P + +AI+E L + +T L+ S+ IGR Q+ +++ E I
Sbjct: 9 ITDPRINLAIEEYAL---KNLDINETYLLFYINEPSIIIGRNQNTIEEINTEYVESNGIH 65
Query: 68 VVRRITGGGSVFHDEFGEITYSVVISDDYHPSLKNIQESYRFLAGPLVDALKDLGLNAGF 127
VVRR++GGG+V+HD G + +S + DD S N Q+ P++ AL LG+ A
Sbjct: 66 VVRRLSGGGAVYHDH-GNLNFSFITKDDGE-SFSNFQK----FTDPVIKALAKLGVTAEL 119
Query: 128 SGLNDIVVN-GKKISGSAQTRRKGIILQHGTFMYSTRLEVLASVLKVSKEKLRDKGIRSI 186
G NDI+ + G+KISG+AQ KG + HGT ++ + ++ + S L VSK+K+ KGI+SI
Sbjct: 120 KGRNDIIASDGRKISGNAQFSTKGRMFSHGTLLFDSEIDHVVSALNVSKDKIESKGIKSI 179
Query: 187 YERVTTL-EREGIKLSMQETYELLRNSFFRA-FPLEEGELTEYELELAQELVEERYGKDE 244
RV + E K+S+ + LL S F ++E +LT + EL +ERY +
Sbjct: 180 RSRVANISEFLTEKISIDQFRSLLLESIFDGQANIQEYKLTADDWAEIHELSKERYQNWD 239
Query: 245 WNFMK 249
WN+ K
Sbjct: 240 WNYGK 244
>gb|AAK43260.1| Lipoate-protein ligase A (lplA-2) [Sulfolobus solfataricus]
Length = 264
Score = 122 bits (303), Expect = 4e-27
Identities = 85/272 (31%), Positives = 145/272 (53%), Gaps = 35/272 (12%)
Query: 1 MRFIPLIVARPE---LQMAIDEAILIARSEGKVPDTVRLYVFKPSSVTIGRFQSVRHDVD 57
M+ + +IV P MAIDEAI++ R+ DT+RLY++ PS V++GR Q+ +
Sbjct: 1 MKMLRIIVDGPRDPYYNMAIDEAIMLTRNSVNY-DTLRLYMWSPSGVSLGRGQNA-NAAY 58
Query: 58 IEKARELNIPVVRRITGGGSVFHDEFGEITYSVVISDDYHPSLKNIQESYRFLAGPLVDA 117
++ +EL +VRR TGGG++ H E EITYSVV+S + ++ ES +A ++
Sbjct: 59 LDNIKELGFKLVRRPTGGGALLHPEDNEITYSVVLSASNTIAKLSVDESAVEIAKGILYT 118
Query: 118 LKDLGLNAGFSGL---------------NDIVVNGKKISGSAQTRRKGIILQHGTFMYST 162
L+ LG N GL +D++V G+KISGSAQ R +LQHGT +
Sbjct: 119 LQILGENVDIRGLGDMKKHDLCYLRSGSSDVIVAGRKISGSAQVRDDKALLQHGTLLLRF 178
Query: 163 RLEVLASVLK---VSKEKLRDKGIRSIYERVTTLEREGIKLSMQETYELLRNSFFRA--- 216
E+ V++ V++E L+ + + E +++ + + ++ + F +A
Sbjct: 179 EPEIWLKVIRAPGVTEEFLKSRIVGLF---------EFMEVEIDQIFDAMIKGFSKALNE 229
Query: 217 FPLEEGELTEYELELAQELVEERYGKDEWNFM 248
+ G LT E++L+ +L +E+Y ++WN +
Sbjct: 230 IDVFMGSLTPKEIKLSNKLYKEKYSNEKWNLL 261
>emb|CAC11654.1| (AL445064) lipoate protein ligase related protein [Thermoplasma
acidophilum]
Length = 262
Score = 121 bits (300), Expect = 9e-27
Identities = 87/250 (34%), Positives = 132/250 (52%), Gaps = 28/250 (11%)
Query: 13 LQMAIDEAILIARSEGKVPDTVRLYVFKPSSVTIGRFQSVRHDVDIEKARELNIPVVRRI 72
+ +A DEAI + G P + + SV IG FQ +VD++ ++ I + RR
Sbjct: 16 MSLAYDEAIYRSFQYGDKP--ILRFYRHDRSVIIGYFQVAEEEVDLDYMKKNGIMLARRY 73
Query: 73 TGGGSVFHDEFGEITYSVVISDDYHPSLKNIQESYRFLAGPLVDALKDLGLNAGFSGLND 132
TGGG+V+HD G++ +SVV S D +I +R + +V++L+ LGL+A LND
Sbjct: 74 TGGGAVYHD-LGDLNFSVVRSSDD----MDITSMFRTMNEAVVNSLRILGLDARPGELND 128
Query: 133 ----------IVVNGKKISGSAQTRRKGIILQHGTFMYSTRLEVLASVLKVSKEKLRDKG 182
I+ KKI G+A RKG L H + T L++L++VLKV EK RDK
Sbjct: 129 VSIPVNKKTDIMAGEKKIMGAAGAMRKGAKLWHAAMLVHTDLDMLSAVLKVPDEKFRDKI 188
Query: 183 IRSIYERVTTLEREGIKLSMQETYELLRNSFFRAF------PLEEGELTEYELELAQELV 236
+S ERV + + + +S+ E +RN+ R F E +TE E LA+EL
Sbjct: 189 AKSTRERVANV-TDFVDVSIDE----VRNALIRGFSETLHIDFREDTITEKEESLARELF 243
Query: 237 EERYGKDEWN 246
+++Y +EWN
Sbjct: 244 DKKYSTEEWN 253
>pir||C72462 hypothetical protein APE2342 - Aeropyrum pernix (strain K1)
>gi|5106044|dbj|BAA81355.1| (AP000064) 260aa long
hypothetical protein [Aeropyrum pernix]
Length = 260
Score = 111 bits (275), Expect = 8e-24
Identities = 89/257 (34%), Positives = 131/257 (50%), Gaps = 32/257 (12%)
Query: 11 PELQMAIDEAILIARSEGKVPDTVRLYVFKPSSVTIGRFQSVRHDVDIEKARELNIPVVR 70
P + MAIDEAIL G P T+R+Y++ P +T+GR QSV DV++ +A + +VR
Sbjct: 9 PRMNMAIDEAILRV---GAAP-TLRIYMWLPGGLTLGRRQSVE-DVNLAEAEKRGYVLVR 63
Query: 71 RITGGGSVFHDEFGEITYSVVISDDYHPSLK-NIQESYRFLAGPLVDALKDLGLN---AG 126
R TGG ++ H EITYS+V+ D HP ++ ES +AG + AL++LG+ G
Sbjct: 64 RPTGGAALLHPWEREITYSLVL-DSRHPYYSLDVAESAATIAGGVALALEELGIATRVGG 122
Query: 127 FS--------------GLNDIVVNGKKISGSAQTRRKGIILQHGTFMYSTRLEVLASVLK 172
++ G +D+VV G+K+SGSAQ R G +LQHGT + E S++
Sbjct: 123 YTPPPGVIGGLCYVRPGSSDVVVAGRKVSGSAQRRIGGRLLQHGTLLLRFDPEEWLSIIP 182
Query: 173 VSKEKLRDKGIRSIYERVTTLE-REGIKLSMQETYELLRNSFFRAFPL--EEGELTEYEL 229
V + G + R+ +E G S E + L F +A L E L E+
Sbjct: 183 V-----KGAGPSDLASRIAGIEDLAGRSYSFSEVADALVKGFSKALGLEPEPSGLEGREV 237
Query: 230 ELAQELVEERYGKDEWN 246
E A L ++Y WN
Sbjct: 238 EEALRLYRKKYSSPRWN 254
>gb|AAK41323.1| Lipoate protein ligase A, hypothetical (lplA-like1) [Sulfolobus
solfataricus]
Length = 279
Score = 111 bits (274), Expect = 1e-23
Identities = 76/221 (34%), Positives = 120/221 (53%), Gaps = 8/221 (3%)
Query: 32 DTVRLYVFKPSSVTIGRFQSVRHDVDIEKARELNIPVVRRITGGGSVFHDEFGEITYSVV 91
+T+ ++ K V +G Q V +VD+E +++ IPVVRR GGG+V GE Y +V
Sbjct: 33 NTLLVFSVKEPFVNVGIHQEVWLEVDLEFTKKMKIPVVRRDLGGGTVVITP-GEHDYFIV 91
Query: 92 ISDDYHPSLKNIQESYRFLAGPLVDALKDLGLNAGFSGLNDIVVNGKKISGSAQTRRKGI 151
+ + P +N E Y+ P+V+ L+ GL A DIVVNGKKISG+
Sbjct: 92 VRQEDAP--RNPSELYKKFLTPIVNVLRSYGLKADLRD-QDIVVNGKKISGNGAMTHGNS 148
Query: 152 ILQHGTFMYSTRLEVLASVLKVSKEKLRDKGIRSIYERVTTLERE-GIKLSMQETYELLR 210
I+ G + S +++++ ++V EK RDK + + E +T+LERE G +E + L+
Sbjct: 149 IVIAGNILLSLDIDLISKCIRVPTEKFRDKMAKDMSEWLTSLERELGYIPPKEEINKKLK 208
Query: 211 NSFFR--AFPLEEGELTEYELELAQELVEERYGKDEWNFMK 249
+F + E+ LT E+EL ++L E+ K+EW F K
Sbjct: 209 EAFEKELGIKFEDSTLTPEEIELWEKLASEK-AKEEWIFYK 248
>sp|P75394|LPLA_MYCPN PROBABLE LIPOATE-PROTEIN LIGASE A >gi|2146329|pir||S73775 lipoate
protein ligase lplA - Mycoplasma pneumoniae (strain ATCC
29342) >gi|1674137|gb|AAB96097.1| (AE000044) lipoate
protein ligase [Mycoplasma pneumoniae]
Length = 339
Score = 110 bits (272), Expect = 2e-23
Identities = 69/241 (28%), Positives = 122/241 (49%), Gaps = 10/241 (4%)
Query: 11 PELQMAIDEAILIARSEGKVPDTVRLYVF--KPSSVTIGRFQSVRHDVDIEKARELNIPV 68
P A++E +L +E K + +++ F +++ +GR Q+ +V++ + + + +
Sbjct: 13 PYFNAALEEWLL---TEFKKGEEIKVIYFWQNANTIVVGRNQNTYAEVNLSEVEKDKVNL 69
Query: 69 VRRITGGGSVFHDEFGEITYSVVISDDYHPSLKNIQESYRFLAGPLVDALKDLGLNAGFS 128
RR +GGG+VFHD G I +S+++ + K ++ +Y +V L +G+ A F
Sbjct: 70 FRRFSGGGAVFHD-MGNICFSIILPK----AKKEMENAYEETTRNVVKFLNSVGVPAQFH 124
Query: 129 GLNDIVVNGKKISGSAQTRRKGIILQHGTFMYSTRLEVLASVLKVSKEKLRDKGIRSIYE 188
G ND+ + GKK SG A+ K +L HGT ++ T LA L V K K+ KGI S+ +
Sbjct: 125 GRNDLEIEGKKFSGLAEYLSKDRVLVHGTLLFDTDFTKLAKYLNVDKTKMVSKGIESVQK 184
Query: 189 RVTTLEREGIKLSMQETYELLRNSFFRAFPLEEGELTEYELELAQELVEERYGKDEWNFM 248
RV ++ LS E + F E L E +++ ++ +E + +WNF
Sbjct: 185 RVVNVKEYLPNLSTPTFLEKMVQFFTETEHAETIHLDESSIKMVEKRAQEHFQSWDWNFG 244
Query: 249 K 249
K
Sbjct: 245 K 245
>gb|AAG18796.1| (AE004984) lipoate protein ligase; Lpl [Halobacterium sp. NRC-1]
Length = 272
Score = 110 bits (272), Expect = 2e-23
Identities = 77/253 (30%), Positives = 123/253 (48%), Gaps = 30/253 (11%)
Query: 13 LQMAIDEAILIARSEGKVPDTVRLYVFKPSSVTIGRFQSVRHDVDIEKARELNIPVVRRI 72
+QMA+DE ++G P TVR+Y + P ++++G ++ VD A + I V RR
Sbjct: 20 MQMALDEIAAQTAADGG-PRTVRVYTWTPDTLSMG-YRQATDSVDWAAAADAGIDVTRRQ 77
Query: 73 TGGGSVFHDEFGEITYSVVISDDYHPSLKNIQESYRFLAGPLVDALKDLGLNAGFSG--- 129
TGGG ++HD +I+YS+V D P ++ ++Y L P+ DA LG++A F+
Sbjct: 78 TGGGGIYHDAHADISYSIVAPADELPG--DLMDTYELLCTPVFDAFDRLGIDARFTDTEQ 135
Query: 130 ---------------LNDIVVN--GKKISGSAQTRRKGIILQHGTFMYSTRLEVLASVLK 172
+DIV G+KISG+AQ RR ++QHG+ ++ E SV
Sbjct: 136 PALHQPACYLRALNPAHDIVAGDPGRKISGNAQYRRADAVIQHGSLSFALDAERHLSVFS 195
Query: 173 VSKEKLRDKGIRSIYERVTTLEREGIKLSMQETYELLRNSFFRAFPLEEGELTEYELELA 232
D + E VTT+E + + + + + +EGE T+ EL A
Sbjct: 196 DP-----DTTPAAFREHVTTIEAQA-GVDRADAVTAVERALGEWADADEGEWTDAELARA 249
Query: 233 QELVEERYGKDEW 245
++L E+Y D W
Sbjct: 250 RDLAAEKYAADAW 262
>gb|AAK41369.1| Lipoate protein ligase A, hypothetical (lplA-like2) [Sulfolobus
solfataricus]
Length = 344
Score = 106 bits (261), Expect = 3e-22
Identities = 73/239 (30%), Positives = 126/239 (52%), Gaps = 14/239 (5%)
Query: 15 MAIDEAILIARSEGKVPDTVRLYVFKPSSVTIGRFQSVRHDVDIEKARELNIPVVRRITG 74
+A +EA+L++ + G P +R +F P +V +G Q+V +V+IE+ ++ + RR TG
Sbjct: 17 LAGEEALLLSVANGSQP-ILRFVIFDPPAVLVGYHQAVEQEVNIEEVKKRGWEIGRRPTG 75
Query: 75 GGSVFHDEFGEITYSVVISDD---YHPSLKNIQESYRFLAGPLVDALKDLGLNAGFSGLN 131
GG++ + ++ + + ++D Y P + + + A ++ AL LG+ A F N
Sbjct: 76 GGTIIMGPW-QLGWEIYANNDLLGYTP-----ENAIKIGAEGVIRALDKLGIKASFRPKN 129
Query: 132 DIVVNGKKISGSAQTRRKGIILQHGTFMYSTRLEVLASVLKVSKEKLRDKGIRSIYERVT 191
D+ VNG+KISG I GT + ++ + SVL++S EKL+DK R +R+T
Sbjct: 130 DVEVNGRKISGIGAFSEGNYIAVTGTILLDFDVDAMISVLRLSSEKLKDKLARDFKDRLT 189
Query: 192 TLERE-GIKLSMQETYELLRNSFFR--AFPLEEGELTEYELELAQELVEERYGKDEWNF 247
+ +E L M+E ++ R+SF L + E+E + QEL +Y EW F
Sbjct: 190 WVNKELKRSLDMEELIKISRDSFAEVLGIKLSDDYYNEFEKKTIQELA-LKYSSPEWIF 247
>gb|AAC44341.1| (U62057) lipoate-protein ligase [Mycoplasma capricolum]
Length = 334
Score = 103 bits (255), Expect = 2e-21
Identities = 67/248 (27%), Positives = 127/248 (51%), Gaps = 24/248 (9%)
Query: 11 PELQMAIDEAILIARSEGKVPDTVRLYVFKPSSVTIGRFQSVRHDVDIEKARELNIPVVR 70
P + +AI+E + K + + + +++ +GR Q+ ++++E A++ N+ +V+
Sbjct: 12 PAMNLAIEEYLTY---HYKAKEPIVFFWQNANTIVVGRNQNAFAEINLEAAQKDNVKIVK 68
Query: 71 RITGGGSVFHDEFGEITYSVVISD-----DYHPSLKNIQESYRFLAGPLVDALKDLGLNA 125
R TGGG+V+ D G + YS+++ + DY +L+ P++ L +NA
Sbjct: 69 RNTGGGTVYQD-LGNVCYSLIVDNSTDDVDYQKALQ-----------PIITYLNQKNINA 116
Query: 126 GFSGLNDIVVNGKKISGSAQTRRKGIILQHGTFMYSTRLEVLASVLKVSKEKLRDKGIRS 185
FSG ND+V++G K+SG+AQ + L HGT ++ L + L V EKL+ + IRS
Sbjct: 117 MFSGRNDMVIDGYKVSGNAQLKTNEKTLVHGTLLFDVDLSKMPKYLVVDPEKLKHQQIRS 176
Query: 186 IYERVTTLER----EGIKLSMQETYELLRNSFFRAFPLEEGELTEYELELAQELVEERYG 241
RV ++ I + + + +S+ + ++ ELT+ E + Q E ++
Sbjct: 177 KPARVRNIKEFFKDINIDIDLSTFINDVVSSYVKNEKIKWIELTDQEKQYIQSRKETKFD 236
Query: 242 KDEWNFMK 249
+ +W F K
Sbjct: 237 QWDWTFGK 244
>sp|P47512|LPLA_MYCGE PROBABLE LIPOATE-PROTEIN LIGASE A >gi|1361583|pir||H64229
hypothetical protein homolog MG270 - Mycoplasma
genitalium >gi|1045964|gb|AAC71492.1| (U39706) lipoate
protein ligase (lplA) [Mycoplasma genitalium]
Length = 336
Score = 101 bits (250), Expect = 7e-21
Identities = 70/244 (28%), Positives = 122/244 (49%), Gaps = 10/244 (4%)
Query: 8 VARPELQMAIDEAILIARSEGKVPDTVRLYVF--KPSSVTIGRFQSVRHDVDIEKARELN 65
V P A++E +L +E + + V++ F +++ +GR Q+ +V++++
Sbjct: 10 VFNPYFNAALEEWLL---TEFRKNELVKVIYFWQNANTIVVGRNQNTYAEVNLKELESDK 66
Query: 66 IPVVRRITGGGSVFHDEFGEITYSVVISDDYHPSLKNIQESYRFLAGPLVDALKDLGLNA 125
+ + RR +GGG+VFHD G I +S+++ + K ++ +Y +V L L + A
Sbjct: 67 VNLFRRFSGGGAVFHD-LGNICFSIILPR----TGKVMENAYEQTTRNVVKFLNSLNVPA 121
Query: 126 GFSGLNDIVVNGKKISGSAQTRRKGIILQHGTFMYSTRLEVLASVLKVSKEKLRDKGIRS 185
F G ND+ +N KK SG A+ K +L HGT ++ T LA L V K K+ KG+ S
Sbjct: 122 VFHGRNDLEINNKKFSGLAEYIAKDRLLVHGTLLFDTDFSKLAKYLNVDKTKIASKGVDS 181
Query: 186 IYERVTTLEREGIKLSMQETYELLRNSFFRAFPLEEGELTEYELELAQELVEERYGKDEW 245
+ +RV ++ + + E + N F E LT+ L ++ +E + EW
Sbjct: 182 VAKRVVNVKEYLPNWTTAKFLEEMINFFTVTEKAETIVLTKDALAKVEKRAKEHFQSWEW 241
Query: 246 NFMK 249
NF K
Sbjct: 242 NFGK 245
>pir||A70467 hypothetical protein aq_1952 - Aquifex aeolicus
>gi|2984208|gb|AAC07738.1| (AE000765) putative protein
[Aquifex aeolicus]
Length = 345
Score = 99.5 bits (244), Expect = 3e-20
Identities = 62/198 (31%), Positives = 108/198 (54%), Gaps = 7/198 (3%)
Query: 45 TIGRFQSVRHDVDIEKARELNIPVVRRITGGGSVFHDEFGEITYSVVISDDYHPSLKNIQ 104
++G F + +D+EK ++L IPV+RR GGG+V E ++ Y +++ P +
Sbjct: 40 SVGYFDKTQEILDLEKCKKLGIPVIRREVGGGAVLLHE-NQVFYQLILKKSRAPF--KVI 96
Query: 105 ESYRFLAGPLVDALKDLGLNAGFSGLNDIVV--NGKKISGSAQTRRKGIILQHGTFMYST 162
++Y+ + P+++ + LG+ + +ND+VV N KKISG + + G +
Sbjct: 97 DAYKKFSQPVINVYRRLGVEVEYRPINDLVVKRNKKKISGQGAADIEDSFVFVGGILLKF 156
Query: 163 RLEVLASVLKVSKEKLRDKGIRSIYERVTTLEREGIKL-SMQETYELLRNSFFRAFPLE- 220
+++A + ++ +EK RDK +S+ E VT +ERE +L S +E E L F + P E
Sbjct: 157 NTKLMAEIFRIPEEKFRDKVHKSLEENVTWVERETGRLPSYEEVEEFLVEEFSKVIPFEG 216
Query: 221 EGELTEYELELAQELVEE 238
E + E +ELA +L EE
Sbjct: 217 EEPVPEEAIELADKLKEE 234
>gb|AAK43257.1| Lipoate-protein ligase A (lplA-1) [Sulfolobus solfataricus]
Length = 247
Score = 94.4 bits (231), Expect = 1e-18
Identities = 75/248 (30%), Positives = 122/248 (48%), Gaps = 23/248 (9%)
Query: 11 PELQMAIDEAILIARSEGKVPDTVRLYVFKPSSVTIGRFQSVRHDVDIEKARELNIPVVR 70
P L +A+DEA+L+ K +R++ SV +G S+ +V++E ++ ++ + R
Sbjct: 14 PYLNVAMDEALLL---HSKYVPILRIWR-NEKSVVLGILSSISDEVNLEMIKKYDVKLAR 69
Query: 71 RITGGGSVFHDEFGEITYSVVISDDYHPSLKNIQESYRFLAGPLVDALKDLGLNAGFSGL 130
RI+GGGSVFHD G I Y+ + S I Y +L + A+++L +N
Sbjct: 70 RISGGGSVFHD-MGNINYTFITSGQ-----GGIDYLYGYLLRGTISAIENL-VNDRVEVY 122
Query: 131 N--DIVVNGKKISGSAQTRRKGIILQHGTFMYSTRLEVLASVLKVSKEKLRDKGIRSIYE 188
N DI G KISG+A + L HGT + S+ L++L VL + + R K I I
Sbjct: 123 NETDIAFKGYKISGNAGYINEDKYLLHGTLLVSSNLDILHKVLIIPPKNYRKKDINMIKY 182
Query: 189 RVTTLEREGIKLSMQETYELLRNSFFRAF-------PLEEGELTEYELELAQELVEERYG 241
RV+ L + TY+ +F R F ++++ EL+LA L E+Y
Sbjct: 183 RVSNLSN---LVKGDITYDEAIEAFIRGFSSLLRCDDYFFDDISDEELKLAMRLANEKYS 239
Query: 242 KDEWNFMK 249
K E+ + +
Sbjct: 240 KKEFIYKR 247
>sp|P54511|YQHM_BACSU HYPOTHETICAL 22.8 KD PROTEIN IN GCVT-SPOIIIAA INTERGENIC REGION
>gi|1303894|dbj|BAA12550.1| (D84432) YqhM [Bacillus
subtilis]
Length = 196
Score = 90.5 bits (221), Expect = 2e-17
Identities = 54/198 (27%), Positives = 101/198 (50%), Gaps = 28/198 (14%)
Query: 78 VFHDEFGEITYSVVISDDYHPSLKNIQESYRFLAGPLVDALKDLGLNAGFS--------- 128
+ HD+ E+TYSV++S+++ + E+YR ++ ++ ++LGL+A F+
Sbjct: 1 MLHDQ--ELTYSVIVSEEHPEMPATVTEAYRVISEGILQGFRNLGLDAYFAIPRTEKEKE 58
Query: 129 --------------GLNDIVVNGKKISGSAQTRRKGIILQHGTFMYSTRLEVLASVLKVS 174
++VV G+K++GSAQTR+KG+ILQHG+ + + L +
Sbjct: 59 SLKNPRSSVCFDAPSWYELVVEGRKVAGSAQTRQKGVILQHGSILLDLDEDKLFDLFLYP 118
Query: 175 KEKLRDKGIRSIYERVTTL-EREGIKLSMQETYELLRNSFFRA--FPLEEGELTEYELEL 231
E++R++ R+ + + E +++M E + + F LE EL++ EL+
Sbjct: 119 SERVRERMQRNFKNKAVAINELIEKRVTMDEARKAFKEGFETGLNIHLEPYELSQEELDF 178
Query: 232 AQELVEERYGKDEWNFMK 249
L E +Y DEWN+ +
Sbjct: 179 VHHLAETKYASDEWNYKR 196
>sp|Q9Y9E6|LIPB_AERPE PROBABLE LIPOATE-PROTEIN LIGASE B (LIPOATE BIOSYNTHESIS PROTEIN B)
>gi|7521166|pir||B72462 probable lipoate-protein ligase
A APE2341 - Aeropyrum pernix (strain K1)
>gi|5106043|dbj|BAA81354.1| (AP000064) 264aa long
hypothetical lipoate-protein ligase A [Aeropyrum pernix]
Length = 264
Score = 89.3 bits (218), Expect = 4e-17
Identities = 67/236 (28%), Positives = 113/236 (47%), Gaps = 12/236 (5%)
Query: 11 PELQMAIDEAILIARSEGKVPDTVRLYVFKPSSVTIGRFQSVRHDVDIEKARELNIPVVR 70
P +A++EA+L +E + RL+V P S+ +G V +V+IE+AR +PVVR
Sbjct: 10 PHFNIALEEALLEESAEHGIA-IARLWV-NPDSIIVGYTSDVGREVNIEQARAEGVPVVR 67
Query: 71 RITGGGSVFHDEFGEITYSVVISDDYHPSLKNIQESYRFLAGPLVDALKDLGLNAGFSGL 130
RI+GGG+VFHD G + SV Y P + E+Y + ++ L LG+
Sbjct: 68 RISGGGAVFHD-LGNMNVSV-----YIPRRLGVDEAYALVTSIILKTLHRLGIEGRVENG 121
Query: 131 NDIVVNGKKISGSAQTRRKGIILQHGTFMYSTRLEVLASVLKVSKEKLRDKGIRSIYERV 190
ND+ V K+SGSA R L H T + +T + ++ ++ + +
Sbjct: 122 NDVAVGPWKVSGSAAAIRARATLAHATLLLTTDPSRIRRLVIPQLHRVERGEVTPVKYNP 181
Query: 191 TTLER-EGIKLSMQETYELLRNSFFRAFPLEEG---ELTEYELELAQELVEERYGK 242
+LER G ++ + + LL S A E ++ + + A+EL + +Y +
Sbjct: 182 NSLERITGERMEVWQAARLLEESVKHALGEPENVGRDILQEAVIRARELCKTKYSQ 237
>sp|P32099|LPLA_ECOLI LIPOATE-PROTEIN LIGASE A >gi|625729|pir||A54035 lipoate--protein
ligase (EC 6.3.4.-) A [validated] - Escherichia coli
>gi|504496|gb|AAA21740.1| (L27665) lipoate-protein
ligase A [Escherichia coli] >gi|537226|gb|AAA97282.1|
(U14003) yjjF gene product [Escherichia coli]
>gi|1790846|gb|AAC77339.1| (AE000508) lipoate-protein
ligase A [Escherichia coli K12]
Length = 338
Score = 86.6 bits (211), Expect = 3e-16
Identities = 75/251 (29%), Positives = 121/251 (47%), Gaps = 32/251 (12%)
Query: 11 PELQMAIDEAILIARSEGKVPDTVR-LYVFKPS-SVTIGRFQSVRHDVDIEKARELNIPV 68
P +A++E I ++P T R L++++ + +V IGR Q+ + + + E N+ +
Sbjct: 14 PWFNLAVEECIF-----RQMPATQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDNVRL 68
Query: 69 VRRITGGGSVFHDEFGEITYSVVISDDYHPSLKNIQESYRFLAGPLVDALKDLGLNAGFS 128
RR +GGG+VFHD G ++ + + K I S +++AL LG++A S
Sbjct: 69 ARRSSGGGAVFHD-LGNTCFTFMAGKPEYD--KTISTSI------VLNALNALGVSAEAS 119
Query: 129 GLNDIVVN----GKKISGSAQTRRKGIILQHGTFMYSTRLEVLASVLKVSKEKLRDKGIR 184
G ND+VV +K+SGSA K HGT + + L LA+ L K+KL KGI
Sbjct: 120 GRNDLVVKTVEGDRKVSGSAYRETKDRGFHHGTLLLNADLSRLANYLNPDKKKLAAKGIT 179
Query: 185 SIYERVTTLEREGIKLSMQETYELLRNSFFRAFPLEEGELTEYELELAQELVE------- 237
S+ RVT L ++ ++ E + +FF + GE E E+ + +
Sbjct: 180 SVRSRVTNLTELLPGITHEQVCEAITEAFFAHY----GERVEAEIISPNKTPDLPNFAET 235
Query: 238 -ERYGKDEWNF 247
R EWNF
Sbjct: 236 FARQSSWEWNF 246
>gb|AAG20904.1| (AE005157) lipoate protein ligase; LipB [Halobacterium sp. NRC-1]
Length = 169
Score = 77.6 bits (188), Expect = 1e-13
Identities = 48/160 (30%), Positives = 80/160 (50%), Gaps = 3/160 (1%)
Query: 86 ITYSVVISDDYHPSLKNIQESYRFLAGPLVDALKDLGLNAGFSGLNDIVVNGKKISGSAQ 145
+TYS+ + + P ++ +SY +L +DAL+ +G++A + LNDIV K+ G+AQ
Sbjct: 9 LTYSLYLPPEDVPD--DVADSYVYLDQWAIDALQAVGIDASYEPLNDIVHADGKLGGAAQ 66
Query: 146 TRRKGIILQHGTFMYSTRLEVLASVLKVSKEKLRDKGIRSIYERVTTLEREGIKLSMQET 205
R G +L H T Y +E + VL++ +EKL DK + S +RV + + S
Sbjct: 67 LRTDGAVLHHTTMSYDLDIERMLRVLRIGEEKLSDKAVASAEKRVAVM-TDHTDASRATI 125
Query: 206 YELLRNSFFRAFPLEEGELTEYELELAQELVEERYGKDEW 245
+ L + F G L+ E A+ L E++ W
Sbjct: 126 VDALVAAIGDTFETRRGSLSAATREAARTLAAEQFDTAAW 165
>pir||T39701 Lipoate-protein ligase A - fission yeast (Schizosaccharomyces
pombe) >gi|2257523|dbj|BAA21417.1| (AB004537)
LIPOATE-PROTEIN LIGASE A [Schizosaccharomyces pombe]
>gi|5679728|emb|CAB51768.1| (AL109652) Lipoate-protein
ligase A [Schizosaccharomyces pombe]
Length = 363
Score = 74.1 bits (179), Expect = 1e-12
Identities = 54/169 (31%), Positives = 91/169 (52%), Gaps = 15/169 (8%)
Query: 36 LYVFKPSSVTIGRFQSVRHDVDIEKARELNIPVVRRITGGGSVFHDEFGEITYSVVISDD 95
LY PS V IGR Q+ + +++ R+ + ++RR +GGG+VFHD FG + YSV+++ +
Sbjct: 57 LYTNSPS-VIIGRNQNPWVEANVKLCRDNFVNIIRRKSGGGTVFHD-FGNLNYSVLMNRE 114
Query: 96 YHPSLKNIQESYRFLAGPLVDALKDLGLNAGFSGLNDIVV--NGKKISGSAQTRRKGIIL 153
+N A ++ AL++LG++A + +DIV+ + +KISGSA +
Sbjct: 115 EFSHTEN--------ASIMIQALRNLGVHARLNQRHDIVLAQSQRKISGSAYKISRNRCY 166
Query: 154 QHGTFMYSTRLEVLASVLKVSKEKLRDKGI---RSIYERVTTLEREGIK 199
HGT + ++ LE + L+ + KG+ RS L+ E IK
Sbjct: 167 HHGTMLLNSDLEGVREYLRSPSTGILSKGVSSTRSPVSNTKLLKAEFIK 215
>pir||B70324 hypothetical protein aq_264 - Aquifex aeolicus
>gi|2982970|gb|AAC06584.1| (AE000681) putative protein
[Aquifex aeolicus]
Length = 217
Score = 69.5 bits (167), Expect = 4e-11
Identities = 62/230 (26%), Positives = 99/230 (42%), Gaps = 43/230 (18%)
Query: 1 MRFIPLIVARPELQMAIDEAILIARSEGKVPDTVRLYVFKPSSVTIGRFQSVRHDVDIEK 60
MRF+ + PE M IDE + I G++ RLY +K V++GR Q +
Sbjct: 1 MRFLGFGIFSPEENMKIDEELQIKLENGEIEPCFRLYKWKGVCVSLGRNQ---------E 51
Query: 61 ARELNIPVVRRITGGGSVFHDEFGEITYSVVISDDYHPSLKNIQESYRFLAGPLVDALKD 120
+E + VVRR TGGG++ H ++++ +V DY +N YR ++ + K+
Sbjct: 52 EKEFPVKVVRRPTGGGALLHG--WDLSFCIV---DYKNG-RNFMRFYREVSKMFYNIFKE 105
Query: 121 LGLNAGFSGLNDIVV-----------------NGKKISGSAQTRRKGIILQHGTFMYSTR 163
G+N F + GKK+ A K L HG+
Sbjct: 106 FGVNLKFERNKSYSLQTYYCYFFPTFGELKTEEGKKVVAIAMRELKNTFLLHGSVYVDFD 165
Query: 164 LEVLASVLKVSKEKLRDKGIRSIYERVTTLEREGIKLSMQETYELLRNSF 213
+ +L V +E+LR +RVTTL+ GI +E ++ L S+
Sbjct: 166 YNYASKILNVKEEELR--------KRVTTLKELGIS---EEDFKTLLCSY 204
>pir||E82204 lipoate-protein ligase A VC1388 [imported] - Vibrio cholerae (group
O1 strain N16961) >gi|9655884|gb|AAF94546.1| (AE004218)
lipoate-protein ligase A [Vibrio cholerae]
Length = 338
Score = 68.7 bits (165), Expect = 6e-11
Identities = 58/213 (27%), Positives = 95/213 (44%), Gaps = 17/213 (7%)
Query: 43 SVTIGRFQSVRHDVDIEKARELNIPVVRRITGGGSVFHDEFGEITYSVVISDDYHPSLKN 102
+V IGR Q+ + ++ + + + RR TGGG+VFHD G ++ + P
Sbjct: 43 TVVIGRAQNPWRECKTDRMEQDKVKLARRQTGGGAVFHD-LGNTNFTFMAGK---PEYDK 98
Query: 103 IQESYRFLAGPLVDALKDLGLNAGFSGLNDIVVNG----KKISGSAQTRRKGIILQHGTF 158
+ LAG L+ LG++ +G ND+V+ +K SGSA HGT
Sbjct: 99 EVSTKIVLAG-----LQKLGIHGVANGRNDLVLEDEQGIRKFSGSAYRETLDRGFHHGTL 153
Query: 159 MYSTRLEVLASVLKVSKEKLRDKGIRSIYERVTTLEREGIKLSMQETYELLRNSFFRAFP 218
+ S L LA L +KL+ KGI S+ RV L + Q+ E + ++ +
Sbjct: 154 LLSADLNRLADYLNPDLKKLQAKGITSVKSRVINLNTVKADIEHQQVCEAIMQAYCEHYQ 213
Query: 219 LE-EGELTEYELELAQELVEERYGKD---EWNF 247
+ E EL + E+++ + +WNF
Sbjct: 214 QQVEPELISPQSFFDLPGFEQKFAQQSSWDWNF 246
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.139 0.384
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85951599
Number of Sequences: 2977
Number of extensions: 3415414
Number of successful extensions: 8873
Number of sequences better than 1.0e-10: 27
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 8807
Number of HSP's gapped (non-prelim): 27
length of query: 249
length of database: 189,106,746
effective HSP length: 57
effective length of query: 192
effective length of database: 154,992,987
effective search space: 29758653504
effective search space used: 29758653504
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 164 (68.3 bits)