BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1919 (PAB1919) DE:Hypothetical protein
         (142 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75109 hypothetical protein PAB1919 - Pyrococcus abyssi (st...   294  2e-79
pir||C71024 hypothetical protein PH1488 - Pyrococcus horikoshii ...   164  6e-40
pir||H72656 hypothetical protein APE0681 - Aeropyrum pernix (str...    80  2e-14

>pir||G75109 hypothetical protein PAB1919 - Pyrococcus abyssi (strain Orsay)
           >gi|5458103|emb|CAB49592.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 142
           
 Score =  294 bits (746), Expect = 2e-79
 Identities = 142/142 (100%), Positives = 142/142 (100%)

Query: 1   MLLVIPIDVLTSILKKAKEVDYEICGFIFGKREGNKFIGKRARFIENTLRSPIRFKMNPE 60
           MLLVIPIDVLTSILKKAKEVDYEICGFIFGKREGNKFIGKRARFIENTLRSPIRFKMNPE
Sbjct: 1   MLLVIPIDVLTSILKKAKEVDYEICGFIFGKREGNKFIGKRARFIENTLRSPIRFKMNPE 60

Query: 61  EMLKALEEAEKLGEEPVSIFHSHVNCPPYPSEEDLKGMRNWRIPWLIVNRKGEFSAYILE 120
           EMLKALEEAEKLGEEPVSIFHSHVNCPPYPSEEDLKGMRNWRIPWLIVNRKGEFSAYILE
Sbjct: 61  EMLKALEEAEKLGEEPVSIFHSHVNCPPYPSEEDLKGMRNWRIPWLIVNRKGEFSAYILE 120

Query: 121 GDEIKKVEVELRYPNRTPPSRA 142
           GDEIKKVEVELRYPNRTPPSRA
Sbjct: 121 GDEIKKVEVELRYPNRTPPSRA 142


>pir||C71024 hypothetical protein PH1488 - Pyrococcus horikoshii
           >gi|3257912|dbj|BAA30595.1| (AP000006) 170aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 170
           
 Score =  164 bits (410), Expect = 6e-40
 Identities = 73/140 (52%), Positives = 106/140 (75%), Gaps = 2/140 (1%)

Query: 1   MLLVIPIDVLTSILKKAKEVDYEICGFIFGKREGNKFIGKRARFIENTLRSPIRFKMNPE 60
           M+LV+P +++  I+ +++E   EICGFIFG + G +FIGK   FI N L S + F+M+PE
Sbjct: 32  MILVLPKNIIEEIITRSRESKIEICGFIFGTKNGERFIGKEVEFIRNRLNSSVEFEMDPE 91

Query: 61  EMLKALEEAEKLGEEPVSIFHSHVNCPPYPSEEDLKGMRNWRIPWLIVNRKGEFSAYIL- 119
           EM+ ALE AE+ G E V+IFHSH+NCPPYPS++D+KGM NWRIPWLIV+ KG+  A+IL 
Sbjct: 92  EMINALERAERKGLEVVTIFHSHLNCPPYPSKKDIKGMENWRIPWLIVSLKGDMKAFILR 151

Query: 120 EGDEIKKVEVELRYPNRTPP 139
             +E+++V++ + +P +T P
Sbjct: 152 SNNEVEEVKI-ITHPTQTLP 170


>pir||H72656 hypothetical protein APE0681 - Aeropyrum pernix (strain K1)
           >gi|5104341|dbj|BAA79656.1| (AP000060) 114aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 114
           
 Score = 79.6 bits (193), Expect = 2e-14
 Identities = 40/108 (37%), Positives = 62/108 (57%), Gaps = 1/108 (0%)

Query: 23  EICGFIFGKREGNKFIGKRARFIENTLRSPIRFKMNPEEMLKALEEAEKLGEEPVSIFHS 82
           E  G + G R G+          +N  +SP  F+ +P ++++A   AEKLG E V ++H+
Sbjct: 7   EEAGLVIGARRGDTVYAYILYRTDNLKQSPEEFESDPWQVVQAHRAAEKLGLEVVGVYHT 66

Query: 83  HVNCPPYPSEEDLKGMRNWRIPWLIVNRKGEFSAYILEGDEIKKVEVE 130
           H  CPP PS +D++GM+ W   WLI    GE  A+ LEG+   ++E+E
Sbjct: 67  HTTCPPSPSGKDVEGMKRWPGVWLIA-CPGEVKAWTLEGETPVEIELE 113


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.141    0.419 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56652014
Number of Sequences: 2977
Number of extensions: 2243799
Number of successful extensions: 5053
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5049
Number of HSP's gapped (non-prelim): 3
length of query: 142
length of database: 189,106,746
effective HSP length: 51
effective length of query: 91
effective length of database: 158,583,909
effective search space: 14431135719
effective search space used: 14431135719
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 161 (67.1 bits)