BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1920 (PAB1920) DE:Hypothetical protein
(212 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75109 hypothetical protein PAB1920 - Pyrococcus abyssi (st... 428 e-119
pir||E71025 hypothetical protein PH1497 - Pyrococcus horikoshii ... 330 9e-90
dbj|BAB05140.1| (AP001512) unknown conserved protein [Bacillus h... 108 5e-23
sp|P54493|YQGP_BACSU HYPOTHETICAL 56.4 KD PROTEIN IN SODA-COMGA ... 94 2e-18
gb|AAA02747.1| (L13655) membrane protein [Saccharum hybrid culti... 93 2e-18
pir||A72359 conserved hypothetical protein - Thermotoga maritima... 92 5e-18
emb|CAB90755.1| (AJ400707) hypothetical protein [Streptococcus u... 90 2e-17
pir||T36724 probable membrane protein - Streptomyces coelicolor ... 90 2e-17
pir||T48496 membrane protein - Arabidopsis thaliana >gi|7546703|... 90 2e-17
pir||A70840 hypothetical protein Rv0110 - Mycobacterium tubercul... 88 8e-17
gb|AAF18693.1|AC010795_8 (AC010795) membrane protein, putative; ... 88 8e-17
gb|AAF88090.1|AC025417_18 (AC025417) T12C24.28 [Arabidopsis thal... 85 7e-16
pir||G69772 conserved hypothetical protein ydcA - Bacillus subti... 84 2e-15
emb|CAA86933.1| (Z46863) hypothetical protein [Acinetobacter sp.... 82 6e-15
gi|11498616 conserved hypothetical protein [Archaeoglobus fulgid... 82 6e-15
gb|AAK40786.1| Conserved hypothetical protein [Sulfolobus solfat... 80 2e-14
pir||T05139 hypothetical protein F7H19.260 - Arabidopsis thalian... 80 3e-14
emb|CAC18292.1| (AL451021) related to membrane protein [Neurospo... 79 4e-14
gb|AAD55606.1|AC008016_16 (AC008016) F6D8.20 [Arabidopsis thaliana] 79 5e-14
dbj|BAB10141.1| (AB005231) gene_id:MBB18.4~similar to unknown pr... 79 5e-14
pir||T45918 hypothetical protein F5K20.80 - Arabidopsis thaliana... 78 9e-14
pir||T34866 probable membrane protein - Streptomyces coelicolor ... 75 6e-13
gb|AAG28808.1|AC079374_11 (AC079374) hypothetical protein [Arabi... 72 5e-12
pir||H81375 probable integral membrane protein Cj1003c [imported... 71 9e-12
dbj|BAB04236.1| (AP001508) unknown conserved protein [Bacillus h... 70 3e-11
pir||T31488 hypothetical protein Y116A8C.16 - Caenorhabditis ele... 69 3e-11
pir||B83259 hypothetical protein PA3086 [imported] - Pseudomonas... 68 1e-10
>pir||B75109 hypothetical protein PAB1920 - Pyrococcus abyssi (strain Orsay)
>gi|5458098|emb|CAB49587.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 212
Score = 428 bits (1090), Expect = e-119
Identities = 212/212 (100%), Positives = 212/212 (100%)
Query: 1 MVWKRVFKVPGKLEVGRSLRLHKYFPGTFSLMIIITAVFIYEVIVGFDRAILELAQINEL 60
MVWKRVFKVPGKLEVGRSLRLHKYFPGTFSLMIIITAVFIYEVIVGFDRAILELAQINEL
Sbjct: 1 MVWKRVFKVPGKLEVGRSLRLHKYFPGTFSLMIIITAVFIYEVIVGFDRAILELAQINEL 60
Query: 61 VFRGQWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNVLS 120
VFRGQWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNVLS
Sbjct: 61 VFRGQWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNVLS 120
Query: 121 LFTLDPRIASGGASGGLFGIVGALLSIEGVLRRNIQKALINALALFLINSIFPGVNIFAH 180
LFTLDPRIASGGASGGLFGIVGALLSIEGVLRRNIQKALINALALFLINSIFPGVNIFAH
Sbjct: 121 LFTLDPRIASGGASGGLFGIVGALLSIEGVLRRNIQKALINALALFLINSIFPGVNIFAH 180
Query: 181 FGGLVTGLVLGYFYGIWLKRKLLDMSYWFEFA 212
FGGLVTGLVLGYFYGIWLKRKLLDMSYWFEFA
Sbjct: 181 FGGLVTGLVLGYFYGIWLKRKLLDMSYWFEFA 212
>pir||E71025 hypothetical protein PH1497 - Pyrococcus horikoshii
>gi|3257922|dbj|BAA30605.1| (AP000006) 197aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 197
Score = 330 bits (837), Expect = 9e-90
Identities = 157/194 (80%), Positives = 172/194 (87%)
Query: 17 RSLRLHKYFPGTFSLMIIITAVFIYEVIVGFDRAILELAQINELVFRGQWWRLLTAIFLH 76
+ LRLHKYFPGTFSL+I+ T VFIYE++VGFDRAI ELAQIN LV GQWWRL+TAIFLH
Sbjct: 2 KDLRLHKYFPGTFSLIILTTLVFIYELVVGFDRAIQELAQINGLVTLGQWWRLITAIFLH 61
Query: 77 MGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNVLSLFTLDPRIASGGASGG 136
MGF+HF LN FWLFYLG DLEGIVGT+RFL VFFASAL GN+LSL TL P +ASGGASGG
Sbjct: 62 MGFIHFGLNIFWLFYLGIDLEGIVGTRRFLTVFFASALVGNLLSLITLPPYVASGGASGG 121
Query: 137 LFGIVGALLSIEGVLRRNIQKALINALALFLINSIFPGVNIFAHFGGLVTGLVLGYFYGI 196
LFG+VGALL IEGVLRRNIQKALINAL LFLINSIFPGVN AHFGGLVTGL+ GY+YG
Sbjct: 122 LFGVVGALLGIEGVLRRNIQKALINALLLFLINSIFPGVNAVAHFGGLVTGLIFGYYYGK 181
Query: 197 WLKRKLLDMSYWFE 210
WL+RK+LDMSYW E
Sbjct: 182 WLRRKMLDMSYWLE 195
>dbj|BAB05140.1| (AP001512) unknown conserved protein [Bacillus halodurans]
Length = 514
Score = 108 bits (268), Expect = 5e-23
Identities = 61/171 (35%), Positives = 101/171 (58%), Gaps = 11/171 (6%)
Query: 28 TFSLMIIITAVFIYEVIVGFDRAILEL----AQINELVFRGQWWRLLTAIFLHMGFVHFA 83
T+ L+++I +++ + G + L A+ N + G+WWRLL+++FLH+G +HF
Sbjct: 189 TYGLLVVIAFMYVLLEMNGGSTDMPTLIEFGAKYNPAIADGEWWRLLSSMFLHIGILHFM 248
Query: 84 LNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNVLSLFTLDPRIASGGASGGLFGIVGA 143
+N+ LFYLG +E I GT RF I++F + LAG++ S F L+ + S GASG +FG GA
Sbjct: 249 MNSLALFYLGGTVERIYGTSRFFIIYFIAGLAGSIAS-FALNAHV-SAGASGAIFGCFGA 306
Query: 144 LLSIEGVLRRNIQKALINALALFLI-----NSIFPGVNIFAHFGGLVTGLV 189
LL V ++ + + +++ L L+ I P ++ AH GGL+ G +
Sbjct: 307 LLYFGTVHKKLFFRTMGSSVLLILVFNLAFGFIIPMIDNGAHIGGLIGGFL 357
>sp|P54493|YQGP_BACSU HYPOTHETICAL 56.4 KD PROTEIN IN SODA-COMGA INTERGENIC REGION
>gi|7459505|pir||B69957 conserved hypothetical protein
yqgP - Bacillus subtilis >gi|1303863|dbj|BAA12519.1|
(D84432) YqgP [Bacillus subtilis]
>gi|2634921|emb|CAB14418.1| (Z99116) similar to
hypothetical proteins [Bacillus subtilis]
Length = 507
Score = 93.6 bits (229), Expect = 2e-18
Identities = 59/173 (34%), Positives = 91/173 (52%), Gaps = 13/173 (7%)
Query: 29 FSLMIIITAVFIYEVIVGFDRAILELAQINELVFRGQWWRLLTAIFLHMGFVHFALNAFW 88
FSL+ I E +V F A+ N L+ +G+WWRLLT I LH+G H A N
Sbjct: 191 FSLLEINGGSTNTETLVAFG------AKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLA 244
Query: 89 LFYLGTDLEGIVGTKRFLIVFFASALAGNVLSLFTLDPRIASGGASGGLFGIVGALLSIE 148
L+ +GT +E + G+ RFL+++ A+ + G++ S F P S GASG +FG +GALL +
Sbjct: 245 LWSVGTAVERMYGSGRFLLIYLAAGITGSIAS-FVFSP-YPSAGASGAIFGCLGALLYVA 302
Query: 149 GVLRRNIQKAL-INALALFLINSIF----PGVNIFAHFGGLVTGLVLGYFYGI 196
R+ + + N + + +IN F ++ H GGL+ G G+
Sbjct: 303 LSNRKMFLRTIGTNIIVIIIINLGFGFAVSNIDNSGHIGGLIGGFFAAAALGL 355
>gb|AAA02747.1| (L13655) membrane protein [Saccharum hybrid cultivar H65-7052]
Length = 325
Score = 93.2 bits (228), Expect = 2e-18
Identities = 52/141 (36%), Positives = 77/141 (53%), Gaps = 6/141 (4%)
Query: 58 NELVFRGQWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGN 117
N++V + Q WRL++ I+LH G +H +N L ++G LE G R ++ S G+
Sbjct: 106 NKIVHQDQGWRLISCIWLHAGLIHLVVNMLSLLFIGIRLEQQFGFVRIGAIYLLSGFGGS 165
Query: 118 VLSLFTLDPRIASGGASGGLFGIVGALLS---IEGVLRRNIQKALINALALFLIN---SI 171
VLS L S GASG LFG++G++LS + + N A+I L + +N I
Sbjct: 166 VLSALFLRNNYISVGASGALFGLLGSMLSELLMNWTIYSNKAAAIITLLFIIALNLAIGI 225
Query: 172 FPGVNIFAHFGGLVTGLVLGY 192
P V+ FAH GG TG +LG+
Sbjct: 226 LPHVDNFAHIGGFATGFLLGF 246
>pir||A72359 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981102|gb|AAD35669.1|AE001733_6 (AE001733)
conserved hypothetical protein [Thermotoga maritima]
Length = 235
Score = 92.1 bits (225), Expect = 5e-18
Identities = 56/160 (35%), Positives = 90/160 (56%), Gaps = 15/160 (9%)
Query: 55 AQINELVFRGQWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASAL 114
AQ V G W+RL+TA+F+H G +H N++ L+Y G +E I GT++FL+ +F + +
Sbjct: 43 AQYGPRVDAGDWFRLITALFVHGGILHILFNSYALYYFGLIVEDIYGTEKFLVGYFFTGI 102
Query: 115 AGNVLSLFTLDPRIASGGASGGLFGIVGALLSIEGVLRRNIQKAL-----INALALFLIN 169
GN+ + I S GASG +FG++G L + R++ + ++ L + LIN
Sbjct: 103 VGNLATHVFYHDTI-SVGASGAIFGLIGILFA--AGFRKDTPFFMKPVTGVSLLPIILIN 159
Query: 170 SIF---PGVNI--FAHFGGLVTGLVLGYFYG--IWLKRKL 202
++ PG NI AH GG ++G++LGY W +R L
Sbjct: 160 VVYGFLPGTNINNAAHLGGFLSGMLLGYTMSPFSWKRRTL 199
>emb|CAB90755.1| (AJ400707) hypothetical protein [Streptococcus uberis]
Length = 223
Score = 90.5 bits (221), Expect = 2e-17
Identities = 58/187 (31%), Positives = 98/187 (52%), Gaps = 10/187 (5%)
Query: 24 YFPGTFSLMIIITAVFIYEVIVGFDRAILELAQINELVFRG---QWWRLLTAIFLHMGFV 80
+F L+ I+ VF Y + + + + LV + Q WRL+T IF+H+G+
Sbjct: 12 FFLSVTILLFIVMQVF-YGSWAKSPQVVFQFGGMFGLVVKSMPSQLWRLVTPIFIHIGWE 70
Query: 81 HFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNVLSLFTLDPRIASGGASGGLFGI 140
HF +N+ L+++G E I G++ FL+++ S + GNVL+LF P + + GAS LFG+
Sbjct: 71 HFLINSLTLYFVGQLAESIWGSRFFLLLYVLSGIMGNVLTLF-FTPHVVAAGASTSLFGL 129
Query: 141 VGALLSI----EGVLRRNIQKALINALALFLINSIF-PGVNIFAHFGGLVTGLVLGYFYG 195
A++ + L ++I K+ + L L+ ++F P V I H GG + G + F
Sbjct: 130 FAAIVVVGYFGHNQLLKSIGKSYQTLIILNLVMNLFMPNVGIVGHLGGALGGALAAVFLP 189
Query: 196 IWLKRKL 202
L +L
Sbjct: 190 TLLDAEL 196
>pir||T36724 probable membrane protein - Streptomyces coelicolor
>gi|5102807|emb|CAB45222.1| (AL079308) putative membrane
protein [Streptomyces coelicolor A3(2)]
Length = 297
Score = 90.1 bits (220), Expect = 2e-17
Identities = 47/134 (35%), Positives = 73/134 (54%)
Query: 59 ELVFRGQWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNV 118
E V G+W+RL+T +F H H N L++LG LE +G R+L ++ S LAG+V
Sbjct: 127 EGVAEGEWYRLVTTMFTHEEIWHIGFNMISLWFLGGPLEAALGRARYLALYLVSGLAGSV 186
Query: 119 LSLFTLDPRIASGGASGGLFGIVGALLSIEGVLRRNIQKALINALALFLINSIFPGVNIF 178
L+ P A+ GASG +FG+ GA ++ L +++ +I + + ++
Sbjct: 187 LAYLLASPTTATLGASGAIFGLFGATAALVRRLNADMRPVVILLVISLIFTFTRGNISWQ 246
Query: 179 AHFGGLVTGLVLGY 192
AH GGLV G V+GY
Sbjct: 247 AHVGGLVAGAVIGY 260
>pir||T48496 membrane protein - Arabidopsis thaliana >gi|7546703|emb|CAB87281.1|
(AL163652) membrane protein [Arabidopsis thaliana]
Length = 346
Score = 90.1 bits (220), Expect = 2e-17
Identities = 55/141 (39%), Positives = 80/141 (56%), Gaps = 7/141 (4%)
Query: 58 NELVFRGQWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGN 117
+++V + + WRLLT I+LH G +H N L ++G LE G R +++ S + G+
Sbjct: 126 SKVVEKKEGWRLLTCIWLHAGVIHLGANMLSLVFIGIRLEQQFGFVRIGVIYLLSGIGGS 185
Query: 118 VLSLFTLDPRIASGGASGGLFGIVGALLS---IEGVLRRNIQKALINALALFLIN---SI 171
VLS + I S GASG LFG++G++LS + N AL+ L + LIN I
Sbjct: 186 VLSSLFIRNSI-SVGASGALFGLLGSMLSELFTNWTIYSNKIAALLTLLFVILINLAIGI 244
Query: 172 FPGVNIFAHFGGLVTGLVLGY 192
P V+ FAH GG VTG +LG+
Sbjct: 245 LPHVDNFAHVGGFVTGFLLGF 265
>pir||A70840 hypothetical protein Rv0110 - Mycobacterium tuberculosis (strain
H37RV) >gi|2909575|emb|CAA17304.1| (AL021926)
hypothetical protein Rv0110 [Mycobacterium tuberculosis]
Length = 249
Score = 88.2 bits (215), Expect = 8e-17
Identities = 62/183 (33%), Positives = 98/183 (52%), Gaps = 14/183 (7%)
Query: 28 TFSLMIIITAVFIYEV-IVGFDRAILELAQINELVFRGQWWRLLTAIFLHMGFVHFALNA 86
T++L+ + VF+ +V ++G +R +LA V GQ +RL+T+ FLH G +H LN
Sbjct: 40 TYTLISLNALVFVMQVTVMGLER---QLALWPPAVASGQTYRLVTSAFLHYGAMHLLLNM 96
Query: 87 FWLFYLGTDLEGIVGTKRFLIVFFASALAGNVLSLFTLDPRIASGGASGGLFGIVGALLS 146
+ L+ +G LE +G RF ++ SAL G+VL A+ GASG +FG+ GA
Sbjct: 97 WALYVVGPPLEMWLGRLRFGALYAVSALGGSVLVYLIAPLNTATAGASGAVFGLFGATFM 156
Query: 147 IEGVLRRNIQKALINALALFLINSIF----PGVNIFAHFGGLVTGLVLG--YFYGIWLKR 200
+ L +++ +AL +IN F P ++ H GGLVTG ++ Y Y +R
Sbjct: 157 VARRLHLDVRW----VVALIVINLAFTFLAPAISWQGHVGGLVTGALVAATYVYAPRERR 212
Query: 201 KLL 203
L+
Sbjct: 213 NLI 215
>gb|AAF18693.1|AC010795_8 (AC010795) membrane protein, putative; 61952-60281 [Arabidopsis
thaliana]
Length = 317
Score = 88.2 bits (215), Expect = 8e-17
Identities = 54/140 (38%), Positives = 76/140 (53%), Gaps = 7/140 (5%)
Query: 59 ELVFRGQWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNV 118
++V Q WRLL+ ++LH G +H N L ++G LE G R +++ S L G++
Sbjct: 103 KVVHEHQGWRLLSCMWLHAGIIHLLTNMLSLIFIGIRLEQQFGFIRVGLIYLISGLGGSI 162
Query: 119 LSLFTLDPRIASGGASGGLFGIVGALLS---IEGVLRRNIQKALINALALFLIN---SIF 172
LS L I S GASG LFG++GA+LS + N ALI L + IN +
Sbjct: 163 LSSLFLQESI-SVGASGALFGLLGAMLSELLTNWTIYANKAAALITLLFIIAINLALGML 221
Query: 173 PGVNIFAHFGGLVTGLVLGY 192
P V+ FAH GG +TG LG+
Sbjct: 222 PRVDNFAHIGGFLTGFCLGF 241
>gb|AAF88090.1|AC025417_18 (AC025417) T12C24.28 [Arabidopsis thaliana]
Length = 302
Score = 85.0 bits (207), Expect = 7e-16
Identities = 54/133 (40%), Positives = 75/133 (55%), Gaps = 9/133 (6%)
Query: 67 WRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNVLSLFTLDP 126
WRL+TA++LH G +H +N F + G LE G R +++ S G++LS L
Sbjct: 93 WRLITAMWLHAGIIHLVMNMFDVIIFGIRLEQQFGFIRIGLIYLISGFGGSILSALFLQK 152
Query: 127 RIASGGASGGLFGIVGALLSIEGVLRRNIQKALINALALFL----IN---SIFPGVNIFA 179
I S GASG L G++GA+LS E + I K+ + AL FL IN + P V+ FA
Sbjct: 153 SI-SVGASGALLGLMGAMLS-ELLTNWTIYKSKLCALLSFLFIIAINLAIGLLPWVDNFA 210
Query: 180 HFGGLVTGLVLGY 192
H GGL+TG LG+
Sbjct: 211 HIGGLLTGFCLGF 223
>pir||G69772 conserved hypothetical protein ydcA - Bacillus subtilis
>gi|1881271|dbj|BAA19298.1| (AB001488) FUNCTION UNKNOWN,
SIMILAR PRODUCT IN H. INFLUENZAE AND SYNECHOCYSTIS.
[Bacillus subtilis] >gi|2632761|emb|CAB12268.1| (Z99106)
similar to hypothetical proteins [Bacillus subtilis]
Length = 199
Score = 83.9 bits (204), Expect = 2e-15
Identities = 51/139 (36%), Positives = 72/139 (51%), Gaps = 9/139 (6%)
Query: 61 VFRGQWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNVLS 120
V G+WWRL+T I LH GF H N+ +F LE ++G RFL+V+ S + GN+ +
Sbjct: 53 VANGEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGT 112
Query: 121 LFTLDPRIASGGASGGLFGIVGALLSIEGVLRRN------IQKALINALAL-FLINSIFP 173
T GASG +FG+ G L + VL RN K +I LA L++ I
Sbjct: 113 YVTEPLDYVHVGASGAIFGLFGVYLFM--VLFRNELIGQEHSKMIITLLAFAVLMSFINS 170
Query: 174 GVNIFAHFGGLVTGLVLGY 192
+N+ AH GL G +L +
Sbjct: 171 NINMMAHLFGLCGGFLLSF 189
>emb|CAA86933.1| (Z46863) hypothetical protein [Acinetobacter sp. ADP1]
Length = 276
Score = 81.9 bits (199), Expect = 6e-15
Identities = 64/223 (28%), Positives = 109/223 (48%), Gaps = 37/223 (16%)
Query: 14 EVGRSLRLHKYFPGTFSLMIIITAVFIYEVIVGFDR-------AILELAQINELVFRGQW 66
++ R L LH ++ T L+ I +F+++++ G D AI A L + Q
Sbjct: 8 QINRKLDLHAWWM-TAMLIAINVGLFVWQILHGVDASNPAPADAIRWGADFAPLTYLEQP 66
Query: 67 WRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNVLSLF---- 122
RL+T++F H GFVH ALN + L+ G+ E I+G F+ ++F + L G++LS +
Sbjct: 67 QRLITSMFFHFGFVHLALNMWALYIFGSLAEQILGRFYFIGLYFLAGLMGSLLSGYMSIQ 126
Query: 123 -----------------TLDPRIASGGASGGLFGIVGALLSIEGVLRRNIQKALINALAL 165
+L P IA+ GASG + G+ GAL + +Q+ +++ AL
Sbjct: 127 DSYELLNHFNSIAGSQSSLIPHIAA-GASGAVMGLGGALTILAFFPPLPLQRFILDKKAL 185
Query: 166 FLINSI-------FPGVNIFAHFGGLVTGLVLGYFYGIWLKRK 201
++ I G+N AH GG++ G L + + ++ K K
Sbjct: 186 LIVMGINLAFGFMTIGINNSAHIGGMIMGAFLVFIWYLFQKMK 228
>gi|11498616 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483073|pir||C69376 conserved hypothetical protein
AF1011 - Archaeoglobus fulgidus
>gi|2649584|gb|AAB90231.1| (AE001034) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 330
Score = 81.9 bits (199), Expect = 6e-15
Identities = 60/212 (28%), Positives = 102/212 (47%), Gaps = 24/212 (11%)
Query: 17 RSLRLHKYFPGTFSLMIIITAVFIYEVIVGFDRAILELAQINELVFRGQWWRLLTAIFLH 76
R++ L KY +++II T +F ++ ++ + V W+L+T++FLH
Sbjct: 124 RNIGLMKYGANN-TVLIICTILFFISIVAPYEMVEIFALHPRLDVLLAMPWQLITSMFLH 182
Query: 77 MGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNVLSL---FTLDPRIASGGA 133
+ F HF +N F L + GT+LE +G +++L +FF S LAGNV + + + + GA
Sbjct: 183 VEFWHFFVNMFVLLFFGTELERRLGDRKYLEIFFVSGLAGNVGYIAYSYAVGSFAPALGA 242
Query: 134 SGGLFGIVGALLSIEGVLR---------RNIQKALIN-------ALALFLINSIFPGVNI 177
S +FG++G L I +R NI+ AL+ + + + V
Sbjct: 243 SAAIFGVMGCLAIIAPEIRIIIFPIPIPINIRTALLLFAAYDFWMMVASYMGLFYTNVAN 302
Query: 178 FAHFGGLVTGLVLGYFYGIWLKRKLLDMSYWF 209
AH GL GL +YG L R+ + ++F
Sbjct: 303 IAHLAGLAVGL----YYGKRLGRRKVRYDFYF 330
>gb|AAK40786.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 214
Score = 80.4 bits (195), Expect = 2e-14
Identities = 52/173 (30%), Positives = 92/173 (53%), Gaps = 9/173 (5%)
Query: 28 TFSLMIIITAVFIYEVIVGF--DRAILELAQINELVFRGQWWRLLTAIFLHMGFVHFALN 85
TF LM ++T F+ ++ F ++ L Q+N LV +G + L T+IF+ FV F N
Sbjct: 35 TFFLMFLVTLGFMVGLLATFIDSTSLYYLEQLNYLVIKGYYSELFTSIFITNSFVDFIFN 94
Query: 86 --AFWLFYLGTDLEGIVGTKRFLIVFFASALAGNVLSLFTLDPRIASGGASGGLFGIVGA 143
+ ++ YL + G K +F + + GN+L++ P S GASGG+FG++
Sbjct: 95 FISLYVIYL---IFGSRAGKHEYGIFILAGILGNLLTVIFYSPFTLSSGASGGIFGLLSY 151
Query: 144 LLSIEGVLRRNI-QKALINALALFLINS-IFPGVNIFAHFGGLVTGLVLGYFY 194
+ + + N+ L+ +++F ++ IFP VN+ AH GG++ G++ Y
Sbjct: 152 YTFYDFLKKDNLGVYGLVFLVSVFGVSDLIFPNVNVVAHIGGILGGIMYAVVY 204
>pir||T05139 hypothetical protein F7H19.260 - Arabidopsis thaliana
>gi|3292833|emb|CAA19823.1| (AL031018) putative membrane
protein [Arabidopsis thaliana]
>gi|7269154|emb|CAB79262.1| (AL161558) putative membrane
protein [Arabidopsis thaliana]
Length = 313
Score = 79.6 bits (193), Expect = 3e-14
Identities = 50/140 (35%), Positives = 73/140 (51%), Gaps = 7/140 (5%)
Query: 59 ELVFRGQWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNV 118
++V + Q WRLLT ++LH G +H N + Y+G LE G R ++ S G++
Sbjct: 97 KIVHKRQVWRLLTCMWLHAGVIHLLANMCCVAYIGVRLEQQFGFVRVGTIYLVSGFCGSI 156
Query: 119 LSLFTLDPRIASGGASGGLFGIVGALLS---IEGVLRRNIQKALINALALFLIN---SIF 172
LS L+ I S GAS LFG++GA+LS I N A++ L + +N
Sbjct: 157 LSCLFLEDAI-SVGASSALFGLLGAMLSELLINWTTYDNKGVAIVMLLVIVGVNLGLGTL 215
Query: 173 PGVNIFAHFGGLVTGLVLGY 192
P V+ FAH GG G +LG+
Sbjct: 216 PPVDNFAHIGGFFGGFLLGF 235
>emb|CAC18292.1| (AL451021) related to membrane protein [Neurospora crassa]
Length = 497
Score = 79.2 bits (192), Expect = 4e-14
Identities = 45/134 (33%), Positives = 74/134 (54%), Gaps = 8/134 (5%)
Query: 65 QWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNVLSLFTL 124
QWWR +T +FLH G +H N +G ++E +G+ RF IV+ ++ + G V+
Sbjct: 241 QWWRFITPMFLHAGVIHIGFNMLLQMTIGKEMERSIGSIRFFIVYVSAGIFGFVMGGNFA 300
Query: 125 DPRIASGGASGGLFGIVGALLSIEGVL----RRNIQKALINA---LALFLINSIFPGVNI 177
+ + GASG LFGI+ ALL ++ + R++ K L+ + + + + PG++
Sbjct: 301 ANGMQTTGASGALFGII-ALLLLDLLYSWRDRKSPWKDLLFIGLDIVISFVLGLLPGLDN 359
Query: 178 FAHFGGLVTGLVLG 191
FAH GG + GL LG
Sbjct: 360 FAHIGGFLAGLALG 373
>gb|AAD55606.1|AC008016_16 (AC008016) F6D8.20 [Arabidopsis thaliana]
Length = 309
Score = 78.8 bits (191), Expect = 5e-14
Identities = 50/140 (35%), Positives = 73/140 (51%), Gaps = 7/140 (5%)
Query: 60 LVFRGQWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNVL 119
LV G+ WRL++ I+LH GF+H N L +G LE G R ++ S L G+++
Sbjct: 100 LVEEGERWRLISCIWLHGGFLHLMANMISLMCIGMRLEQEFGFMRIGALYVISGLGGSLV 159
Query: 120 SLFT-LDPRIASGGASGGLFGIVGALLS---IEGVLRRNIQKALINALALFLIN---SIF 172
S T S GASG LFG++GA+LS + N AL+ + + ++N
Sbjct: 160 SCLTDSQGERVSVGASGALFGLLGAMLSELITNWTIYENKCTALMTLILIIVLNLSVGFL 219
Query: 173 PGVNIFAHFGGLVTGLVLGY 192
P V+ AHFGG + G LG+
Sbjct: 220 PRVDNSAHFGGFLAGFFLGF 239
>dbj|BAB10141.1| (AB005231) gene_id:MBB18.4~similar to unknown protein~sp|P54493
[Arabidopsis thaliana]
Length = 434
Score = 78.8 bits (191), Expect = 5e-14
Identities = 49/149 (32%), Positives = 81/149 (53%), Gaps = 14/149 (9%)
Query: 55 AQINELVFRGQWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASAL 114
A+IN+L+ G+WWRL+T +FLH G H AL+++ L G + G F +++ +
Sbjct: 220 AKINDLILAGEWWRLVTPMFLHSGIPHVALSSWALLTFGPKVCRDYGLFTFCLIYILGGV 279
Query: 115 AGNVLS-LFTLDPRIASGGASGGLFGIVGALLSIEG----VLRRN-----IQKALINALA 164
+GN +S L T DP + G +G F ++GA L + +++ N QKA+I
Sbjct: 280 SGNFMSFLHTADPTV---GGTGPAFALIGAWLVDQNQNKEMIKSNEYEDLFQKAII-MTG 335
Query: 165 LFLINSIFPGVNIFAHFGGLVTGLVLGYF 193
LI S F ++ + + G L+ G+V G+F
Sbjct: 336 FGLILSHFGPIDDWTNLGALIAGIVYGFF 364
>pir||T45918 hypothetical protein F5K20.80 - Arabidopsis thaliana
>gi|7629998|emb|CAB88340.1| (AL132960) putative protein
[Arabidopsis thaliana]
Length = 361
Score = 78.0 bits (189), Expect = 9e-14
Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 12/142 (8%)
Query: 57 INELVFRGQWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAG 116
+ ++V + WRLL+ +LH G VH +N L ++G +E +G +++ S G
Sbjct: 102 VKKVVKGDEGWRLLSCNWLHGGVVHLLMNMLTLLFIGIRMELRIG-----LLYLISGFGG 156
Query: 117 NVLSLFTLDPRIASGGASGGLFGIVGALLS---IEGVLRRNIQKALINALALFLIN---S 170
++LS L I S GASG +FG++G +LS I + N ++ + + +N
Sbjct: 157 SILSALFLRSNI-SVGASGAVFGLLGGMLSEIFINWTIYSNKVVTIVTLVLIVAVNLGLG 215
Query: 171 IFPGVNIFAHFGGLVTGLVLGY 192
+ PGV+ FAH GG TG +LG+
Sbjct: 216 VLPGVDNFAHIGGFATGFLLGF 237
>pir||T34866 probable membrane protein - Streptomyces coelicolor (fragment)
>gi|5738511|emb|CAB52858.1| (AL109849) putative membrane
protein [Streptomyces coelicolor A3(2)]
Length = 285
Score = 75.3 bits (182), Expect = 6e-13
Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 12/147 (8%)
Query: 59 ELVFRGQWWRLLTAIFLHM-------GFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFA 111
E V G+W R+LT FLH G +H +N L+ LG +E ++G RF +++
Sbjct: 100 EGVAGGEWERMLTGAFLHQSPFEGTFGLLHITMNMVVLWQLGRVVELMLGRTRFAVLYLL 159
Query: 112 SALAGNVLSLFTLDPRIASGGASGGLFGIVGALLSIE---GVLRRNIQKALINALALFLI 168
SAL G+VL L DP AS GASG +FG+ A + G + + + L ++
Sbjct: 160 SALGGSVLELVLADPWQASVGASGAVFGVGAAYYVLHRRLGAEMGRVNRFMAGLLLWLVV 219
Query: 169 NSIFPGVNIFAHFGGLVTGLVLGYFYG 195
++ F H GGL+ G L YG
Sbjct: 220 SAWFTSWQ--GHLGGLLVGGALALAYG 244
>gb|AAG28808.1|AC079374_11 (AC079374) hypothetical protein [Arabidopsis thaliana]
Length = 373
Score = 72.2 bits (174), Expect = 5e-12
Identities = 55/181 (30%), Positives = 88/181 (48%), Gaps = 21/181 (11%)
Query: 32 MIIITAVFIYEVIVGFDRAILEL-AQINELVFRGQWWRLLTAIFLHMGFVHFALNAFWLF 90
+++ V +Y + D +L A+IN L+ RGQ WRL TA LH +H +N + L
Sbjct: 158 VLLAINVIMYIAQIASDGKVLTWGAKINSLIERGQLWRLATASVLHANPMHLMINCYSLN 217
Query: 91 YLGTDLEGIVGTKRFLIVFFASALAGNVLSL--------FTLDPRIASGGASGGLFGIVG 142
+G E + G KRFL V+ SA+A +L + F P + GASG +FG+VG
Sbjct: 218 SIGPTAESLGGPKRFLAVYLTSAVAKPILRVLGSAMSYWFNKAPSV---GASGAIFGLVG 274
Query: 143 ALL--------SIEGVLRRNIQKALINALALFLINSIFPGVNIFAHFGGLVTGLVLGYFY 194
++ + G +Q A I AL + + + ++ + H GGL+ G + +
Sbjct: 275 SVAVFVIRHKQMVRGGNEDLMQIAQIIALNM-AMGLMSRRIDNWGHIGGLLGGTAMTWLL 333
Query: 195 G 195
G
Sbjct: 334 G 334
>pir||H81375 probable integral membrane protein Cj1003c [imported] -
Campylobacter jejuni (strain NCTC 11168)
>gi|6968438|emb|CAB73259.1| (AL139076) putative integral
membrane protein [Campylobacter jejuni]
Length = 172
Score = 71.4 bits (172), Expect = 9e-12
Identities = 44/139 (31%), Positives = 70/139 (49%), Gaps = 5/139 (3%)
Query: 57 INELVFRGQWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAG 116
+N L F G +W+LL+++FLH H LN LF G LE +G F+ ++F L
Sbjct: 27 LNILFFNGAYWQLLSSMFLHGNLTHLILNMIVLFQFGRMLETYLGALCFIFIYFIGGLLC 86
Query: 117 NVLSLFTLDPRIASGGASGGLFGIVGALLSIEG---VLRRNIQKALINALALFLINSIFP 173
++LS+F + G + + G GA+ + G V+ +N K LI A+ L +
Sbjct: 87 SLLSVFYVYFDFKYFGENINVIGASGAICVLMGFYAVIDKNSTKGLIVAILLMSFVPLLM 146
Query: 174 GVNI--FAHFGGLVTGLVL 190
GVN+ + H G + G +L
Sbjct: 147 GVNVAWYGHIFGFMCGYIL 165
>dbj|BAB04236.1| (AP001508) unknown conserved protein [Bacillus halodurans]
Length = 248
Score = 69.9 bits (168), Expect = 3e-11
Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 7/173 (4%)
Query: 25 FPGTFSLMIIITAVFIY-EVIVGFDRAILELAQINELVFRGQWWRLLTAIFLHMGFVHFA 83
+P +L+ I A+F++ ++ G N V +G++WRL+T +FLH+ H
Sbjct: 15 YPIITALVFIHIALFVWIHLLPGGAWVYATGVGFNLAVSQGEYWRLITPVFLHVSIGHLV 74
Query: 84 LNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNVLSLF----TLDPRIASGGASGGLFG 139
N+F L G LE ++G +FL V+ S NV + + + + GA GLFG
Sbjct: 75 FNSFALVIFGPALERMLGKGKFLFVYLLSGFIANVATYYLGGLAYPYHLGASGAIFGLFG 134
Query: 140 IVGALLSIEGVL--RRNIQKALINALALFLINSIFPGVNIFAHFGGLVTGLVL 190
I ++ L N Q + + ++ + +N+FAH G++ G L
Sbjct: 135 IFVYMVIYRKDLIDPANTQLVITIIIIGLVMTFLSSNINVFAHLFGMIGGAAL 187
>pir||T31488 hypothetical protein Y116A8C.16 - Caenorhabditis elegans
>gi|5832784|emb|CAB55122.1| (AL117204) predicted using
Genefinder~contains similarity to Pfam domain: PF01498
(Transposase), Score=238.3, E-value=3.5e-68, N=1;
PF01694 (Rhomboid family), Score=85.0, E-value=4.9e-22,
N=1; PF01720 (Transposase), Score=7.6, E-value=0.00053,
N=1~cDNA>
Length = 946
Score = 69.5 bits (167), Expect = 3e-11
Identities = 44/132 (33%), Positives = 73/132 (54%), Gaps = 9/132 (6%)
Query: 65 QWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNVLSLFTL 124
Q++RL T++F+H G +H AL+ + +Y+ DLE ++ +KR I++FAS + GN+ S +
Sbjct: 670 QFYRLFTSLFVHAGVIHLALSLLFQYYVMKDLENLIASKRMAILYFASGIGGNLASAIFV 729
Query: 125 DPRIASGGASGGLFGIVGALLSIEGVLRRNIQKALINALALFLINSI-------FPGVNI 177
P + G S GI+ A++ +E R I K AL LI ++ P V+
Sbjct: 730 -PYNPAVGPSSAQCGILAAVI-VECCDNRRIIKEFKWALVQHLIVTLLVLCIGFIPWVDN 787
Query: 178 FAHFGGLVTGLV 189
+AH G + GL+
Sbjct: 788 WAHLFGTIFGLL 799
>pir||B83259 hypothetical protein PA3086 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9949195|gb|AAG06474.1|AE004733_1
(AE004733) hypothetical protein [Pseudomonas aeruginosa]
Length = 286
Score = 67.9 bits (163), Expect = 1e-10
Identities = 43/154 (27%), Positives = 70/154 (44%), Gaps = 12/154 (7%)
Query: 59 ELVFRGQWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNV 118
E + GQWWRL T + +H G++H A+NA W + LG +E G L + L NV
Sbjct: 133 ESLAAGQWWRLFTPMLIHFGWLHLAMNAMWFWELGRRIEFRQGRPMLLGLTLLFGLVSNV 192
Query: 119 LSLFTLDPRIASGGASGGLFGIVGALLSIEGVLRRNIQKALINALALFLINSI------- 171
+ + + GG SG L+G++G + + + +A+ LI +
Sbjct: 193 VQ-YAVSGASLFGGLSGVLYGLLGHCWIFQYLAPNQAYRLPRGVVAMMLIWLLVCLSGVI 251
Query: 172 ----FPGVNIFAHFGGLVTGLVLGYFYGIWLKRK 201
F + AH GGL+ G + G G+ +R+
Sbjct: 252 DLLGFGSIANGAHVGGLLVGCLSGLLGGLLARRR 285
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.334 0.150 0.472
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77284889
Number of Sequences: 2977
Number of extensions: 3007506
Number of successful extensions: 9430
Number of sequences better than 1.0e-10: 27
Number of HSP's better than 0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 9385
Number of HSP's gapped (non-prelim): 28
length of query: 212
length of database: 189,106,746
effective HSP length: 46
effective length of query: 166
effective length of database: 161,576,344
effective search space: 26821673104
effective search space used: 26821673104
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (22.0 bits)
S2: 163 (67.9 bits)