BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1920 (PAB1920) DE:Hypothetical protein
         (212 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75109 hypothetical protein PAB1920 - Pyrococcus abyssi (st...   428  e-119
pir||E71025 hypothetical protein PH1497 - Pyrococcus horikoshii ...   330  9e-90
dbj|BAB05140.1| (AP001512) unknown conserved protein [Bacillus h...   108  5e-23
sp|P54493|YQGP_BACSU HYPOTHETICAL 56.4 KD PROTEIN IN SODA-COMGA ...    94  2e-18
gb|AAA02747.1| (L13655) membrane protein [Saccharum hybrid culti...    93  2e-18
pir||A72359 conserved hypothetical protein - Thermotoga maritima...    92  5e-18
emb|CAB90755.1| (AJ400707) hypothetical protein [Streptococcus u...    90  2e-17
pir||T36724 probable membrane protein - Streptomyces coelicolor ...    90  2e-17
pir||T48496 membrane protein - Arabidopsis thaliana >gi|7546703|...    90  2e-17
pir||A70840 hypothetical protein Rv0110 - Mycobacterium tubercul...    88  8e-17
gb|AAF18693.1|AC010795_8 (AC010795) membrane protein, putative; ...    88  8e-17
gb|AAF88090.1|AC025417_18 (AC025417) T12C24.28 [Arabidopsis thal...    85  7e-16
pir||G69772 conserved hypothetical protein ydcA - Bacillus subti...    84  2e-15
emb|CAA86933.1| (Z46863) hypothetical protein [Acinetobacter sp....    82  6e-15
gi|11498616 conserved hypothetical protein [Archaeoglobus fulgid...    82  6e-15
gb|AAK40786.1| Conserved hypothetical protein [Sulfolobus solfat...    80  2e-14
pir||T05139 hypothetical protein F7H19.260 - Arabidopsis thalian...    80  3e-14
emb|CAC18292.1| (AL451021) related to membrane protein [Neurospo...    79  4e-14
gb|AAD55606.1|AC008016_16 (AC008016) F6D8.20 [Arabidopsis thaliana]    79  5e-14
dbj|BAB10141.1| (AB005231) gene_id:MBB18.4~similar to unknown pr...    79  5e-14
pir||T45918 hypothetical protein F5K20.80 - Arabidopsis thaliana...    78  9e-14
pir||T34866 probable membrane protein - Streptomyces coelicolor ...    75  6e-13
gb|AAG28808.1|AC079374_11 (AC079374) hypothetical protein [Arabi...    72  5e-12
pir||H81375 probable integral membrane protein Cj1003c [imported...    71  9e-12
dbj|BAB04236.1| (AP001508) unknown conserved protein [Bacillus h...    70  3e-11
pir||T31488 hypothetical protein Y116A8C.16 - Caenorhabditis ele...    69  3e-11
pir||B83259 hypothetical protein PA3086 [imported] - Pseudomonas...    68  1e-10

>pir||B75109 hypothetical protein PAB1920 - Pyrococcus abyssi (strain Orsay)
           >gi|5458098|emb|CAB49587.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 212
           
 Score =  428 bits (1090), Expect = e-119
 Identities = 212/212 (100%), Positives = 212/212 (100%)

Query: 1   MVWKRVFKVPGKLEVGRSLRLHKYFPGTFSLMIIITAVFIYEVIVGFDRAILELAQINEL 60
           MVWKRVFKVPGKLEVGRSLRLHKYFPGTFSLMIIITAVFIYEVIVGFDRAILELAQINEL
Sbjct: 1   MVWKRVFKVPGKLEVGRSLRLHKYFPGTFSLMIIITAVFIYEVIVGFDRAILELAQINEL 60

Query: 61  VFRGQWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNVLS 120
           VFRGQWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNVLS
Sbjct: 61  VFRGQWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNVLS 120

Query: 121 LFTLDPRIASGGASGGLFGIVGALLSIEGVLRRNIQKALINALALFLINSIFPGVNIFAH 180
           LFTLDPRIASGGASGGLFGIVGALLSIEGVLRRNIQKALINALALFLINSIFPGVNIFAH
Sbjct: 121 LFTLDPRIASGGASGGLFGIVGALLSIEGVLRRNIQKALINALALFLINSIFPGVNIFAH 180

Query: 181 FGGLVTGLVLGYFYGIWLKRKLLDMSYWFEFA 212
           FGGLVTGLVLGYFYGIWLKRKLLDMSYWFEFA
Sbjct: 181 FGGLVTGLVLGYFYGIWLKRKLLDMSYWFEFA 212


>pir||E71025 hypothetical protein PH1497 - Pyrococcus horikoshii
           >gi|3257922|dbj|BAA30605.1| (AP000006) 197aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 197
           
 Score =  330 bits (837), Expect = 9e-90
 Identities = 157/194 (80%), Positives = 172/194 (87%)

Query: 17  RSLRLHKYFPGTFSLMIIITAVFIYEVIVGFDRAILELAQINELVFRGQWWRLLTAIFLH 76
           + LRLHKYFPGTFSL+I+ T VFIYE++VGFDRAI ELAQIN LV  GQWWRL+TAIFLH
Sbjct: 2   KDLRLHKYFPGTFSLIILTTLVFIYELVVGFDRAIQELAQINGLVTLGQWWRLITAIFLH 61

Query: 77  MGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNVLSLFTLDPRIASGGASGG 136
           MGF+HF LN FWLFYLG DLEGIVGT+RFL VFFASAL GN+LSL TL P +ASGGASGG
Sbjct: 62  MGFIHFGLNIFWLFYLGIDLEGIVGTRRFLTVFFASALVGNLLSLITLPPYVASGGASGG 121

Query: 137 LFGIVGALLSIEGVLRRNIQKALINALALFLINSIFPGVNIFAHFGGLVTGLVLGYFYGI 196
           LFG+VGALL IEGVLRRNIQKALINAL LFLINSIFPGVN  AHFGGLVTGL+ GY+YG 
Sbjct: 122 LFGVVGALLGIEGVLRRNIQKALINALLLFLINSIFPGVNAVAHFGGLVTGLIFGYYYGK 181

Query: 197 WLKRKLLDMSYWFE 210
           WL+RK+LDMSYW E
Sbjct: 182 WLRRKMLDMSYWLE 195


>dbj|BAB05140.1| (AP001512) unknown conserved protein [Bacillus halodurans]
           Length = 514
           
 Score =  108 bits (268), Expect = 5e-23
 Identities = 61/171 (35%), Positives = 101/171 (58%), Gaps = 11/171 (6%)

Query: 28  TFSLMIIITAVFIYEVIVGFDRAILEL----AQINELVFRGQWWRLLTAIFLHMGFVHFA 83
           T+ L+++I  +++   + G    +  L    A+ N  +  G+WWRLL+++FLH+G +HF 
Sbjct: 189 TYGLLVVIAFMYVLLEMNGGSTDMPTLIEFGAKYNPAIADGEWWRLLSSMFLHIGILHFM 248

Query: 84  LNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNVLSLFTLDPRIASGGASGGLFGIVGA 143
           +N+  LFYLG  +E I GT RF I++F + LAG++ S F L+  + S GASG +FG  GA
Sbjct: 249 MNSLALFYLGGTVERIYGTSRFFIIYFIAGLAGSIAS-FALNAHV-SAGASGAIFGCFGA 306

Query: 144 LLSIEGVLRRNIQKALINALALFLI-----NSIFPGVNIFAHFGGLVTGLV 189
           LL    V ++   + + +++ L L+       I P ++  AH GGL+ G +
Sbjct: 307 LLYFGTVHKKLFFRTMGSSVLLILVFNLAFGFIIPMIDNGAHIGGLIGGFL 357


>sp|P54493|YQGP_BACSU HYPOTHETICAL 56.4 KD PROTEIN IN SODA-COMGA INTERGENIC REGION
           >gi|7459505|pir||B69957 conserved hypothetical protein
           yqgP - Bacillus subtilis >gi|1303863|dbj|BAA12519.1|
           (D84432) YqgP [Bacillus subtilis]
           >gi|2634921|emb|CAB14418.1| (Z99116) similar to
           hypothetical proteins [Bacillus subtilis]
           Length = 507
           
 Score = 93.6 bits (229), Expect = 2e-18
 Identities = 59/173 (34%), Positives = 91/173 (52%), Gaps = 13/173 (7%)

Query: 29  FSLMIIITAVFIYEVIVGFDRAILELAQINELVFRGQWWRLLTAIFLHMGFVHFALNAFW 88
           FSL+ I       E +V F       A+ N L+ +G+WWRLLT I LH+G  H A N   
Sbjct: 191 FSLLEINGGSTNTETLVAFG------AKENSLIAQGEWWRLLTPIVLHIGIAHLAFNTLA 244

Query: 89  LFYLGTDLEGIVGTKRFLIVFFASALAGNVLSLFTLDPRIASGGASGGLFGIVGALLSIE 148
           L+ +GT +E + G+ RFL+++ A+ + G++ S F   P   S GASG +FG +GALL + 
Sbjct: 245 LWSVGTAVERMYGSGRFLLIYLAAGITGSIAS-FVFSP-YPSAGASGAIFGCLGALLYVA 302

Query: 149 GVLRRNIQKAL-INALALFLINSIF----PGVNIFAHFGGLVTGLVLGYFYGI 196
              R+   + +  N + + +IN  F      ++   H GGL+ G       G+
Sbjct: 303 LSNRKMFLRTIGTNIIVIIIINLGFGFAVSNIDNSGHIGGLIGGFFAAAALGL 355


>gb|AAA02747.1| (L13655) membrane protein [Saccharum hybrid cultivar H65-7052]
           Length = 325
           
 Score = 93.2 bits (228), Expect = 2e-18
 Identities = 52/141 (36%), Positives = 77/141 (53%), Gaps = 6/141 (4%)

Query: 58  NELVFRGQWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGN 117
           N++V + Q WRL++ I+LH G +H  +N   L ++G  LE   G  R   ++  S   G+
Sbjct: 106 NKIVHQDQGWRLISCIWLHAGLIHLVVNMLSLLFIGIRLEQQFGFVRIGAIYLLSGFGGS 165

Query: 118 VLSLFTLDPRIASGGASGGLFGIVGALLS---IEGVLRRNIQKALINALALFLIN---SI 171
           VLS   L     S GASG LFG++G++LS   +   +  N   A+I  L +  +N    I
Sbjct: 166 VLSALFLRNNYISVGASGALFGLLGSMLSELLMNWTIYSNKAAAIITLLFIIALNLAIGI 225

Query: 172 FPGVNIFAHFGGLVTGLVLGY 192
            P V+ FAH GG  TG +LG+
Sbjct: 226 LPHVDNFAHIGGFATGFLLGF 246


>pir||A72359 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
           >gi|4981102|gb|AAD35669.1|AE001733_6 (AE001733)
           conserved hypothetical protein [Thermotoga maritima]
           Length = 235
           
 Score = 92.1 bits (225), Expect = 5e-18
 Identities = 56/160 (35%), Positives = 90/160 (56%), Gaps = 15/160 (9%)

Query: 55  AQINELVFRGQWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASAL 114
           AQ    V  G W+RL+TA+F+H G +H   N++ L+Y G  +E I GT++FL+ +F + +
Sbjct: 43  AQYGPRVDAGDWFRLITALFVHGGILHILFNSYALYYFGLIVEDIYGTEKFLVGYFFTGI 102

Query: 115 AGNVLSLFTLDPRIASGGASGGLFGIVGALLSIEGVLRRNIQKAL-----INALALFLIN 169
            GN+ +       I S GASG +FG++G L +     R++    +     ++ L + LIN
Sbjct: 103 VGNLATHVFYHDTI-SVGASGAIFGLIGILFA--AGFRKDTPFFMKPVTGVSLLPIILIN 159

Query: 170 SIF---PGVNI--FAHFGGLVTGLVLGYFYG--IWLKRKL 202
            ++   PG NI   AH GG ++G++LGY      W +R L
Sbjct: 160 VVYGFLPGTNINNAAHLGGFLSGMLLGYTMSPFSWKRRTL 199


>emb|CAB90755.1| (AJ400707) hypothetical protein [Streptococcus uberis]
           Length = 223
           
 Score = 90.5 bits (221), Expect = 2e-17
 Identities = 58/187 (31%), Positives = 98/187 (52%), Gaps = 10/187 (5%)

Query: 24  YFPGTFSLMIIITAVFIYEVIVGFDRAILELAQINELVFRG---QWWRLLTAIFLHMGFV 80
           +F     L+ I+  VF Y       + + +   +  LV +    Q WRL+T IF+H+G+ 
Sbjct: 12  FFLSVTILLFIVMQVF-YGSWAKSPQVVFQFGGMFGLVVKSMPSQLWRLVTPIFIHIGWE 70

Query: 81  HFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNVLSLFTLDPRIASGGASGGLFGI 140
           HF +N+  L+++G   E I G++ FL+++  S + GNVL+LF   P + + GAS  LFG+
Sbjct: 71  HFLINSLTLYFVGQLAESIWGSRFFLLLYVLSGIMGNVLTLF-FTPHVVAAGASTSLFGL 129

Query: 141 VGALLSI----EGVLRRNIQKALINALALFLINSIF-PGVNIFAHFGGLVTGLVLGYFYG 195
             A++ +       L ++I K+    + L L+ ++F P V I  H GG + G +   F  
Sbjct: 130 FAAIVVVGYFGHNQLLKSIGKSYQTLIILNLVMNLFMPNVGIVGHLGGALGGALAAVFLP 189

Query: 196 IWLKRKL 202
             L  +L
Sbjct: 190 TLLDAEL 196


>pir||T36724 probable membrane protein - Streptomyces coelicolor
           >gi|5102807|emb|CAB45222.1| (AL079308) putative membrane
           protein [Streptomyces coelicolor A3(2)]
           Length = 297
           
 Score = 90.1 bits (220), Expect = 2e-17
 Identities = 47/134 (35%), Positives = 73/134 (54%)

Query: 59  ELVFRGQWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNV 118
           E V  G+W+RL+T +F H    H   N   L++LG  LE  +G  R+L ++  S LAG+V
Sbjct: 127 EGVAEGEWYRLVTTMFTHEEIWHIGFNMISLWFLGGPLEAALGRARYLALYLVSGLAGSV 186

Query: 119 LSLFTLDPRIASGGASGGLFGIVGALLSIEGVLRRNIQKALINALALFLINSIFPGVNIF 178
           L+     P  A+ GASG +FG+ GA  ++   L  +++  +I  +   +       ++  
Sbjct: 187 LAYLLASPTTATLGASGAIFGLFGATAALVRRLNADMRPVVILLVISLIFTFTRGNISWQ 246

Query: 179 AHFGGLVTGLVLGY 192
           AH GGLV G V+GY
Sbjct: 247 AHVGGLVAGAVIGY 260


>pir||T48496 membrane protein - Arabidopsis thaliana >gi|7546703|emb|CAB87281.1|
           (AL163652) membrane protein [Arabidopsis thaliana]
           Length = 346
           
 Score = 90.1 bits (220), Expect = 2e-17
 Identities = 55/141 (39%), Positives = 80/141 (56%), Gaps = 7/141 (4%)

Query: 58  NELVFRGQWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGN 117
           +++V + + WRLLT I+LH G +H   N   L ++G  LE   G  R  +++  S + G+
Sbjct: 126 SKVVEKKEGWRLLTCIWLHAGVIHLGANMLSLVFIGIRLEQQFGFVRIGVIYLLSGIGGS 185

Query: 118 VLSLFTLDPRIASGGASGGLFGIVGALLS---IEGVLRRNIQKALINALALFLIN---SI 171
           VLS   +   I S GASG LFG++G++LS       +  N   AL+  L + LIN    I
Sbjct: 186 VLSSLFIRNSI-SVGASGALFGLLGSMLSELFTNWTIYSNKIAALLTLLFVILINLAIGI 244

Query: 172 FPGVNIFAHFGGLVTGLVLGY 192
            P V+ FAH GG VTG +LG+
Sbjct: 245 LPHVDNFAHVGGFVTGFLLGF 265


>pir||A70840 hypothetical protein Rv0110 - Mycobacterium tuberculosis  (strain
           H37RV) >gi|2909575|emb|CAA17304.1| (AL021926)
           hypothetical protein Rv0110 [Mycobacterium tuberculosis]
           Length = 249
           
 Score = 88.2 bits (215), Expect = 8e-17
 Identities = 62/183 (33%), Positives = 98/183 (52%), Gaps = 14/183 (7%)

Query: 28  TFSLMIIITAVFIYEV-IVGFDRAILELAQINELVFRGQWWRLLTAIFLHMGFVHFALNA 86
           T++L+ +   VF+ +V ++G +R   +LA     V  GQ +RL+T+ FLH G +H  LN 
Sbjct: 40  TYTLISLNALVFVMQVTVMGLER---QLALWPPAVASGQTYRLVTSAFLHYGAMHLLLNM 96

Query: 87  FWLFYLGTDLEGIVGTKRFLIVFFASALAGNVLSLFTLDPRIASGGASGGLFGIVGALLS 146
           + L+ +G  LE  +G  RF  ++  SAL G+VL         A+ GASG +FG+ GA   
Sbjct: 97  WALYVVGPPLEMWLGRLRFGALYAVSALGGSVLVYLIAPLNTATAGASGAVFGLFGATFM 156

Query: 147 IEGVLRRNIQKALINALALFLINSIF----PGVNIFAHFGGLVTGLVLG--YFYGIWLKR 200
           +   L  +++      +AL +IN  F    P ++   H GGLVTG ++   Y Y    +R
Sbjct: 157 VARRLHLDVRW----VVALIVINLAFTFLAPAISWQGHVGGLVTGALVAATYVYAPRERR 212

Query: 201 KLL 203
            L+
Sbjct: 213 NLI 215


>gb|AAF18693.1|AC010795_8 (AC010795) membrane protein, putative; 61952-60281 [Arabidopsis
           thaliana]
           Length = 317
           
 Score = 88.2 bits (215), Expect = 8e-17
 Identities = 54/140 (38%), Positives = 76/140 (53%), Gaps = 7/140 (5%)

Query: 59  ELVFRGQWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNV 118
           ++V   Q WRLL+ ++LH G +H   N   L ++G  LE   G  R  +++  S L G++
Sbjct: 103 KVVHEHQGWRLLSCMWLHAGIIHLLTNMLSLIFIGIRLEQQFGFIRVGLIYLISGLGGSI 162

Query: 119 LSLFTLDPRIASGGASGGLFGIVGALLS---IEGVLRRNIQKALINALALFLIN---SIF 172
           LS   L   I S GASG LFG++GA+LS       +  N   ALI  L +  IN    + 
Sbjct: 163 LSSLFLQESI-SVGASGALFGLLGAMLSELLTNWTIYANKAAALITLLFIIAINLALGML 221

Query: 173 PGVNIFAHFGGLVTGLVLGY 192
           P V+ FAH GG +TG  LG+
Sbjct: 222 PRVDNFAHIGGFLTGFCLGF 241


>gb|AAF88090.1|AC025417_18 (AC025417) T12C24.28 [Arabidopsis thaliana]
           Length = 302
           
 Score = 85.0 bits (207), Expect = 7e-16
 Identities = 54/133 (40%), Positives = 75/133 (55%), Gaps = 9/133 (6%)

Query: 67  WRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNVLSLFTLDP 126
           WRL+TA++LH G +H  +N F +   G  LE   G  R  +++  S   G++LS   L  
Sbjct: 93  WRLITAMWLHAGIIHLVMNMFDVIIFGIRLEQQFGFIRIGLIYLISGFGGSILSALFLQK 152

Query: 127 RIASGGASGGLFGIVGALLSIEGVLRRNIQKALINALALFL----IN---SIFPGVNIFA 179
            I S GASG L G++GA+LS E +    I K+ + AL  FL    IN    + P V+ FA
Sbjct: 153 SI-SVGASGALLGLMGAMLS-ELLTNWTIYKSKLCALLSFLFIIAINLAIGLLPWVDNFA 210

Query: 180 HFGGLVTGLVLGY 192
           H GGL+TG  LG+
Sbjct: 211 HIGGLLTGFCLGF 223


>pir||G69772 conserved hypothetical protein ydcA - Bacillus subtilis
           >gi|1881271|dbj|BAA19298.1| (AB001488) FUNCTION UNKNOWN,
           SIMILAR PRODUCT IN H. INFLUENZAE AND SYNECHOCYSTIS.
           [Bacillus subtilis] >gi|2632761|emb|CAB12268.1| (Z99106)
           similar to hypothetical proteins [Bacillus subtilis]
           Length = 199
           
 Score = 83.9 bits (204), Expect = 2e-15
 Identities = 51/139 (36%), Positives = 72/139 (51%), Gaps = 9/139 (6%)

Query: 61  VFRGQWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNVLS 120
           V  G+WWRL+T I LH GF H   N+  +F     LE ++G  RFL+V+  S + GN+ +
Sbjct: 53  VANGEWWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGT 112

Query: 121 LFTLDPRIASGGASGGLFGIVGALLSIEGVLRRN------IQKALINALAL-FLINSIFP 173
             T        GASG +FG+ G  L +  VL RN        K +I  LA   L++ I  
Sbjct: 113 YVTEPLDYVHVGASGAIFGLFGVYLFM--VLFRNELIGQEHSKMIITLLAFAVLMSFINS 170

Query: 174 GVNIFAHFGGLVTGLVLGY 192
            +N+ AH  GL  G +L +
Sbjct: 171 NINMMAHLFGLCGGFLLSF 189


>emb|CAA86933.1| (Z46863) hypothetical protein [Acinetobacter sp. ADP1]
           Length = 276
           
 Score = 81.9 bits (199), Expect = 6e-15
 Identities = 64/223 (28%), Positives = 109/223 (48%), Gaps = 37/223 (16%)

Query: 14  EVGRSLRLHKYFPGTFSLMIIITAVFIYEVIVGFDR-------AILELAQINELVFRGQW 66
           ++ R L LH ++  T  L+ I   +F+++++ G D        AI   A    L +  Q 
Sbjct: 8   QINRKLDLHAWWM-TAMLIAINVGLFVWQILHGVDASNPAPADAIRWGADFAPLTYLEQP 66

Query: 67  WRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNVLSLF---- 122
            RL+T++F H GFVH ALN + L+  G+  E I+G   F+ ++F + L G++LS +    
Sbjct: 67  QRLITSMFFHFGFVHLALNMWALYIFGSLAEQILGRFYFIGLYFLAGLMGSLLSGYMSIQ 126

Query: 123 -----------------TLDPRIASGGASGGLFGIVGALLSIEGVLRRNIQKALINALAL 165
                            +L P IA+ GASG + G+ GAL  +       +Q+ +++  AL
Sbjct: 127 DSYELLNHFNSIAGSQSSLIPHIAA-GASGAVMGLGGALTILAFFPPLPLQRFILDKKAL 185

Query: 166 FLINSI-------FPGVNIFAHFGGLVTGLVLGYFYGIWLKRK 201
            ++  I         G+N  AH GG++ G  L + + ++ K K
Sbjct: 186 LIVMGINLAFGFMTIGINNSAHIGGMIMGAFLVFIWYLFQKMK 228


>gi|11498616 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|7483073|pir||C69376 conserved hypothetical protein
           AF1011 - Archaeoglobus fulgidus
           >gi|2649584|gb|AAB90231.1| (AE001034) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 330
           
 Score = 81.9 bits (199), Expect = 6e-15
 Identities = 60/212 (28%), Positives = 102/212 (47%), Gaps = 24/212 (11%)

Query: 17  RSLRLHKYFPGTFSLMIIITAVFIYEVIVGFDRAILELAQINELVFRGQWWRLLTAIFLH 76
           R++ L KY     +++II T +F   ++  ++   +        V     W+L+T++FLH
Sbjct: 124 RNIGLMKYGANN-TVLIICTILFFISIVAPYEMVEIFALHPRLDVLLAMPWQLITSMFLH 182

Query: 77  MGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNVLSL---FTLDPRIASGGA 133
           + F HF +N F L + GT+LE  +G +++L +FF S LAGNV  +   + +     + GA
Sbjct: 183 VEFWHFFVNMFVLLFFGTELERRLGDRKYLEIFFVSGLAGNVGYIAYSYAVGSFAPALGA 242

Query: 134 SGGLFGIVGALLSIEGVLR---------RNIQKALIN-------ALALFLINSIFPGVNI 177
           S  +FG++G L  I   +R          NI+ AL+         +    +   +  V  
Sbjct: 243 SAAIFGVMGCLAIIAPEIRIIIFPIPIPINIRTALLLFAAYDFWMMVASYMGLFYTNVAN 302

Query: 178 FAHFGGLVTGLVLGYFYGIWLKRKLLDMSYWF 209
            AH  GL  GL    +YG  L R+ +   ++F
Sbjct: 303 IAHLAGLAVGL----YYGKRLGRRKVRYDFYF 330


>gb|AAK40786.1| Conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 214
           
 Score = 80.4 bits (195), Expect = 2e-14
 Identities = 52/173 (30%), Positives = 92/173 (53%), Gaps = 9/173 (5%)

Query: 28  TFSLMIIITAVFIYEVIVGF--DRAILELAQINELVFRGQWWRLLTAIFLHMGFVHFALN 85
           TF LM ++T  F+  ++  F    ++  L Q+N LV +G +  L T+IF+   FV F  N
Sbjct: 35  TFFLMFLVTLGFMVGLLATFIDSTSLYYLEQLNYLVIKGYYSELFTSIFITNSFVDFIFN 94

Query: 86  --AFWLFYLGTDLEGIVGTKRFLIVFFASALAGNVLSLFTLDPRIASGGASGGLFGIVGA 143
             + ++ YL   + G    K    +F  + + GN+L++    P   S GASGG+FG++  
Sbjct: 95  FISLYVIYL---IFGSRAGKHEYGIFILAGILGNLLTVIFYSPFTLSSGASGGIFGLLSY 151

Query: 144 LLSIEGVLRRNI-QKALINALALFLINS-IFPGVNIFAHFGGLVTGLVLGYFY 194
               + + + N+    L+  +++F ++  IFP VN+ AH GG++ G++    Y
Sbjct: 152 YTFYDFLKKDNLGVYGLVFLVSVFGVSDLIFPNVNVVAHIGGILGGIMYAVVY 204


>pir||T05139 hypothetical protein F7H19.260 - Arabidopsis thaliana
           >gi|3292833|emb|CAA19823.1| (AL031018) putative membrane
           protein [Arabidopsis thaliana]
           >gi|7269154|emb|CAB79262.1| (AL161558) putative membrane
           protein [Arabidopsis thaliana]
           Length = 313
           
 Score = 79.6 bits (193), Expect = 3e-14
 Identities = 50/140 (35%), Positives = 73/140 (51%), Gaps = 7/140 (5%)

Query: 59  ELVFRGQWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNV 118
           ++V + Q WRLLT ++LH G +H   N   + Y+G  LE   G  R   ++  S   G++
Sbjct: 97  KIVHKRQVWRLLTCMWLHAGVIHLLANMCCVAYIGVRLEQQFGFVRVGTIYLVSGFCGSI 156

Query: 119 LSLFTLDPRIASGGASGGLFGIVGALLS---IEGVLRRNIQKALINALALFLIN---SIF 172
           LS   L+  I S GAS  LFG++GA+LS   I      N   A++  L +  +N      
Sbjct: 157 LSCLFLEDAI-SVGASSALFGLLGAMLSELLINWTTYDNKGVAIVMLLVIVGVNLGLGTL 215

Query: 173 PGVNIFAHFGGLVTGLVLGY 192
           P V+ FAH GG   G +LG+
Sbjct: 216 PPVDNFAHIGGFFGGFLLGF 235


>emb|CAC18292.1| (AL451021) related to membrane protein [Neurospora crassa]
           Length = 497
           
 Score = 79.2 bits (192), Expect = 4e-14
 Identities = 45/134 (33%), Positives = 74/134 (54%), Gaps = 8/134 (5%)

Query: 65  QWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNVLSLFTL 124
           QWWR +T +FLH G +H   N      +G ++E  +G+ RF IV+ ++ + G V+     
Sbjct: 241 QWWRFITPMFLHAGVIHIGFNMLLQMTIGKEMERSIGSIRFFIVYVSAGIFGFVMGGNFA 300

Query: 125 DPRIASGGASGGLFGIVGALLSIEGVL----RRNIQKALINA---LALFLINSIFPGVNI 177
              + + GASG LFGI+ ALL ++ +     R++  K L+     + +  +  + PG++ 
Sbjct: 301 ANGMQTTGASGALFGII-ALLLLDLLYSWRDRKSPWKDLLFIGLDIVISFVLGLLPGLDN 359

Query: 178 FAHFGGLVTGLVLG 191
           FAH GG + GL LG
Sbjct: 360 FAHIGGFLAGLALG 373


>gb|AAD55606.1|AC008016_16 (AC008016) F6D8.20 [Arabidopsis thaliana]
           Length = 309
           
 Score = 78.8 bits (191), Expect = 5e-14
 Identities = 50/140 (35%), Positives = 73/140 (51%), Gaps = 7/140 (5%)

Query: 60  LVFRGQWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNVL 119
           LV  G+ WRL++ I+LH GF+H   N   L  +G  LE   G  R   ++  S L G+++
Sbjct: 100 LVEEGERWRLISCIWLHGGFLHLMANMISLMCIGMRLEQEFGFMRIGALYVISGLGGSLV 159

Query: 120 SLFT-LDPRIASGGASGGLFGIVGALLS---IEGVLRRNIQKALINALALFLIN---SIF 172
           S  T       S GASG LFG++GA+LS       +  N   AL+  + + ++N      
Sbjct: 160 SCLTDSQGERVSVGASGALFGLLGAMLSELITNWTIYENKCTALMTLILIIVLNLSVGFL 219

Query: 173 PGVNIFAHFGGLVTGLVLGY 192
           P V+  AHFGG + G  LG+
Sbjct: 220 PRVDNSAHFGGFLAGFFLGF 239


>dbj|BAB10141.1| (AB005231) gene_id:MBB18.4~similar to unknown protein~sp|P54493
           [Arabidopsis thaliana]
           Length = 434
           
 Score = 78.8 bits (191), Expect = 5e-14
 Identities = 49/149 (32%), Positives = 81/149 (53%), Gaps = 14/149 (9%)

Query: 55  AQINELVFRGQWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASAL 114
           A+IN+L+  G+WWRL+T +FLH G  H AL+++ L   G  +    G   F +++    +
Sbjct: 220 AKINDLILAGEWWRLVTPMFLHSGIPHVALSSWALLTFGPKVCRDYGLFTFCLIYILGGV 279

Query: 115 AGNVLS-LFTLDPRIASGGASGGLFGIVGALLSIEG----VLRRN-----IQKALINALA 164
           +GN +S L T DP +   G +G  F ++GA L  +     +++ N      QKA+I    
Sbjct: 280 SGNFMSFLHTADPTV---GGTGPAFALIGAWLVDQNQNKEMIKSNEYEDLFQKAII-MTG 335

Query: 165 LFLINSIFPGVNIFAHFGGLVTGLVLGYF 193
             LI S F  ++ + + G L+ G+V G+F
Sbjct: 336 FGLILSHFGPIDDWTNLGALIAGIVYGFF 364


>pir||T45918 hypothetical protein F5K20.80 - Arabidopsis thaliana
           >gi|7629998|emb|CAB88340.1| (AL132960) putative protein
           [Arabidopsis thaliana]
           Length = 361
           
 Score = 78.0 bits (189), Expect = 9e-14
 Identities = 46/142 (32%), Positives = 76/142 (53%), Gaps = 12/142 (8%)

Query: 57  INELVFRGQWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAG 116
           + ++V   + WRLL+  +LH G VH  +N   L ++G  +E  +G     +++  S   G
Sbjct: 102 VKKVVKGDEGWRLLSCNWLHGGVVHLLMNMLTLLFIGIRMELRIG-----LLYLISGFGG 156

Query: 117 NVLSLFTLDPRIASGGASGGLFGIVGALLS---IEGVLRRNIQKALINALALFLIN---S 170
           ++LS   L   I S GASG +FG++G +LS   I   +  N    ++  + +  +N    
Sbjct: 157 SILSALFLRSNI-SVGASGAVFGLLGGMLSEIFINWTIYSNKVVTIVTLVLIVAVNLGLG 215

Query: 171 IFPGVNIFAHFGGLVTGLVLGY 192
           + PGV+ FAH GG  TG +LG+
Sbjct: 216 VLPGVDNFAHIGGFATGFLLGF 237


>pir||T34866 probable membrane protein - Streptomyces coelicolor  (fragment)
           >gi|5738511|emb|CAB52858.1| (AL109849) putative membrane
           protein [Streptomyces coelicolor A3(2)]
           Length = 285
           
 Score = 75.3 bits (182), Expect = 6e-13
 Identities = 49/147 (33%), Positives = 72/147 (48%), Gaps = 12/147 (8%)

Query: 59  ELVFRGQWWRLLTAIFLHM-------GFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFA 111
           E V  G+W R+LT  FLH        G +H  +N   L+ LG  +E ++G  RF +++  
Sbjct: 100 EGVAGGEWERMLTGAFLHQSPFEGTFGLLHITMNMVVLWQLGRVVELMLGRTRFAVLYLL 159

Query: 112 SALAGNVLSLFTLDPRIASGGASGGLFGIVGALLSIE---GVLRRNIQKALINALALFLI 168
           SAL G+VL L   DP  AS GASG +FG+  A   +    G     + + +   L   ++
Sbjct: 160 SALGGSVLELVLADPWQASVGASGAVFGVGAAYYVLHRRLGAEMGRVNRFMAGLLLWLVV 219

Query: 169 NSIFPGVNIFAHFGGLVTGLVLGYFYG 195
           ++ F       H GGL+ G  L   YG
Sbjct: 220 SAWFTSWQ--GHLGGLLVGGALALAYG 244


>gb|AAG28808.1|AC079374_11 (AC079374) hypothetical protein [Arabidopsis thaliana]
           Length = 373
           
 Score = 72.2 bits (174), Expect = 5e-12
 Identities = 55/181 (30%), Positives = 88/181 (48%), Gaps = 21/181 (11%)

Query: 32  MIIITAVFIYEVIVGFDRAILEL-AQINELVFRGQWWRLLTAIFLHMGFVHFALNAFWLF 90
           +++   V +Y   +  D  +L   A+IN L+ RGQ WRL TA  LH   +H  +N + L 
Sbjct: 158 VLLAINVIMYIAQIASDGKVLTWGAKINSLIERGQLWRLATASVLHANPMHLMINCYSLN 217

Query: 91  YLGTDLEGIVGTKRFLIVFFASALAGNVLSL--------FTLDPRIASGGASGGLFGIVG 142
            +G   E + G KRFL V+  SA+A  +L +        F   P +   GASG +FG+VG
Sbjct: 218 SIGPTAESLGGPKRFLAVYLTSAVAKPILRVLGSAMSYWFNKAPSV---GASGAIFGLVG 274

Query: 143 ALL--------SIEGVLRRNIQKALINALALFLINSIFPGVNIFAHFGGLVTGLVLGYFY 194
           ++          + G     +Q A I AL +  +  +   ++ + H GGL+ G  + +  
Sbjct: 275 SVAVFVIRHKQMVRGGNEDLMQIAQIIALNM-AMGLMSRRIDNWGHIGGLLGGTAMTWLL 333

Query: 195 G 195
           G
Sbjct: 334 G 334


>pir||H81375 probable integral membrane protein Cj1003c [imported] -
           Campylobacter jejuni (strain NCTC 11168)
           >gi|6968438|emb|CAB73259.1| (AL139076) putative integral
           membrane protein [Campylobacter jejuni]
           Length = 172
           
 Score = 71.4 bits (172), Expect = 9e-12
 Identities = 44/139 (31%), Positives = 70/139 (49%), Gaps = 5/139 (3%)

Query: 57  INELVFRGQWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAG 116
           +N L F G +W+LL+++FLH    H  LN   LF  G  LE  +G   F+ ++F   L  
Sbjct: 27  LNILFFNGAYWQLLSSMFLHGNLTHLILNMIVLFQFGRMLETYLGALCFIFIYFIGGLLC 86

Query: 117 NVLSLFTLDPRIASGGASGGLFGIVGALLSIEG---VLRRNIQKALINALALFLINSIFP 173
           ++LS+F +       G +  + G  GA+  + G   V+ +N  K LI A+ L     +  
Sbjct: 87  SLLSVFYVYFDFKYFGENINVIGASGAICVLMGFYAVIDKNSTKGLIVAILLMSFVPLLM 146

Query: 174 GVNI--FAHFGGLVTGLVL 190
           GVN+  + H  G + G +L
Sbjct: 147 GVNVAWYGHIFGFMCGYIL 165


>dbj|BAB04236.1| (AP001508) unknown conserved protein [Bacillus halodurans]
           Length = 248
           
 Score = 69.9 bits (168), Expect = 3e-11
 Identities = 47/173 (27%), Positives = 81/173 (46%), Gaps = 7/173 (4%)

Query: 25  FPGTFSLMIIITAVFIY-EVIVGFDRAILELAQINELVFRGQWWRLLTAIFLHMGFVHFA 83
           +P   +L+ I  A+F++  ++ G           N  V +G++WRL+T +FLH+   H  
Sbjct: 15  YPIITALVFIHIALFVWIHLLPGGAWVYATGVGFNLAVSQGEYWRLITPVFLHVSIGHLV 74

Query: 84  LNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNVLSLF----TLDPRIASGGASGGLFG 139
            N+F L   G  LE ++G  +FL V+  S    NV + +         + + GA  GLFG
Sbjct: 75  FNSFALVIFGPALERMLGKGKFLFVYLLSGFIANVATYYLGGLAYPYHLGASGAIFGLFG 134

Query: 140 IVGALLSIEGVL--RRNIQKALINALALFLINSIFPGVNIFAHFGGLVTGLVL 190
           I   ++     L    N Q  +   +   ++  +   +N+FAH  G++ G  L
Sbjct: 135 IFVYMVIYRKDLIDPANTQLVITIIIIGLVMTFLSSNINVFAHLFGMIGGAAL 187


>pir||T31488 hypothetical protein Y116A8C.16 - Caenorhabditis elegans
           >gi|5832784|emb|CAB55122.1| (AL117204) predicted using
           Genefinder~contains similarity to Pfam domain: PF01498
           (Transposase), Score=238.3, E-value=3.5e-68, N=1;
           PF01694 (Rhomboid family), Score=85.0, E-value=4.9e-22,
           N=1; PF01720 (Transposase), Score=7.6, E-value=0.00053,
           N=1~cDNA>
           Length = 946
           
 Score = 69.5 bits (167), Expect = 3e-11
 Identities = 44/132 (33%), Positives = 73/132 (54%), Gaps = 9/132 (6%)

Query: 65  QWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNVLSLFTL 124
           Q++RL T++F+H G +H AL+  + +Y+  DLE ++ +KR  I++FAS + GN+ S   +
Sbjct: 670 QFYRLFTSLFVHAGVIHLALSLLFQYYVMKDLENLIASKRMAILYFASGIGGNLASAIFV 729

Query: 125 DPRIASGGASGGLFGIVGALLSIEGVLRRNIQKALINALALFLINSI-------FPGVNI 177
            P   + G S    GI+ A++ +E    R I K    AL   LI ++        P V+ 
Sbjct: 730 -PYNPAVGPSSAQCGILAAVI-VECCDNRRIIKEFKWALVQHLIVTLLVLCIGFIPWVDN 787

Query: 178 FAHFGGLVTGLV 189
           +AH  G + GL+
Sbjct: 788 WAHLFGTIFGLL 799


>pir||B83259 hypothetical protein PA3086 [imported] - Pseudomonas aeruginosa
           (strain PAO1) >gi|9949195|gb|AAG06474.1|AE004733_1
           (AE004733) hypothetical protein [Pseudomonas aeruginosa]
           Length = 286
           
 Score = 67.9 bits (163), Expect = 1e-10
 Identities = 43/154 (27%), Positives = 70/154 (44%), Gaps = 12/154 (7%)

Query: 59  ELVFRGQWWRLLTAIFLHMGFVHFALNAFWLFYLGTDLEGIVGTKRFLIVFFASALAGNV 118
           E +  GQWWRL T + +H G++H A+NA W + LG  +E   G    L +     L  NV
Sbjct: 133 ESLAAGQWWRLFTPMLIHFGWLHLAMNAMWFWELGRRIEFRQGRPMLLGLTLLFGLVSNV 192

Query: 119 LSLFTLDPRIASGGASGGLFGIVGALLSIEGVLRRNIQKALINALALFLINSI------- 171
           +  + +      GG SG L+G++G     + +      +     +A+ LI  +       
Sbjct: 193 VQ-YAVSGASLFGGLSGVLYGLLGHCWIFQYLAPNQAYRLPRGVVAMMLIWLLVCLSGVI 251

Query: 172 ----FPGVNIFAHFGGLVTGLVLGYFYGIWLKRK 201
               F  +   AH GGL+ G + G   G+  +R+
Sbjct: 252 DLLGFGSIANGAHVGGLLVGCLSGLLGGLLARRR 285


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.334    0.150    0.472 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77284889
Number of Sequences: 2977
Number of extensions: 3007506
Number of successful extensions: 9430
Number of sequences better than 1.0e-10: 27
Number of HSP's better than  0.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 9385
Number of HSP's gapped (non-prelim): 28
length of query: 212
length of database: 189,106,746
effective HSP length: 46
effective length of query: 166
effective length of database: 161,576,344
effective search space: 26821673104
effective search space used: 26821673104
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (22.0 bits)
S2: 163 (67.9 bits)