BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1922 (PAB1922) DE:Hypothetical protein
         (132 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F75108 hypothetical protein PAB1922 - Pyrococcus abyssi (st...   259  1e-68
pir||D71081 hypothetical protein PH0914 - Pyrococcus horikoshii ...   152  2e-36
pir||D72396 conserved hypothetical protein - Thermotoga maritima...    99  2e-20

>pir||F75108 hypothetical protein PAB1922 - Pyrococcus abyssi (strain Orsay)
           >gi|5458094|emb|CAB49583.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 132
           
 Score =  259 bits (654), Expect = 1e-68
 Identities = 132/132 (100%), Positives = 132/132 (100%)

Query: 1   MVELEKRYSIPHPSPGTIYPILTSLKKSGLIKSIGEGKRDKKLYSITEKGLKYLEEHKEE 60
           MVELEKRYSIPHPSPGTIYPILTSLKKSGLIKSIGEGKRDKKLYSITEKGLKYLEEHKEE
Sbjct: 1   MVELEKRYSIPHPSPGTIYPILTSLKKSGLIKSIGEGKRDKKLYSITEKGLKYLEEHKEE 60

Query: 61  LREALELVEKFKEFSNLGGRELAKVVKDILDSIDKLSEEQKEALAFEISEFTRRVRLILL 120
           LREALELVEKFKEFSNLGGRELAKVVKDILDSIDKLSEEQKEALAFEISEFTRRVRLILL
Sbjct: 61  LREALELVEKFKEFSNLGGRELAKVVKDILDSIDKLSEEQKEALAFEISEFTRRVRLILL 120

Query: 121 GEIPRREKDVRD 132
           GEIPRREKDVRD
Sbjct: 121 GEIPRREKDVRD 132


>pir||D71081 hypothetical protein PH0914 - Pyrococcus horikoshii
           >gi|3257327|dbj|BAA30010.1| (AP000004) 122aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 122
           
 Score =  152 bits (379), Expect = 2e-36
 Identities = 75/121 (61%), Positives = 100/121 (81%), Gaps = 1/121 (0%)

Query: 1   MVELEKRYSIPHPSPGTIYPILTSLKKSGLIKSIGEGKRDKKLYSITEKGLKYLEEHKEE 60
           M ELEK + I   SPG IYPIL+SL+KSGLI+   EGKR+KKLY ITEKG +YL++H++E
Sbjct: 1   MSELEKTFGIK-VSPGAIYPILSSLRKSGLIEVAREGKREKKLYRITEKGEEYLKKHEDE 59

Query: 61  LREALELVEKFKEFSNLGGRELAKVVKDILDSIDKLSEEQKEALAFEISEFTRRVRLILL 120
           + EALE+  K KEFS LGGRE+A+V+++++++IDKLSEEQK ALA E SEF +R+++ILL
Sbjct: 60  VEEALEIANKLKEFSELGGREVAQVLREVIENIDKLSEEQKTALAREFSEFVKRIKIILL 119

Query: 121 G 121
           G
Sbjct: 120 G 120


>pir||D72396 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
           >gi|4980784|gb|AAD35374.1|AE001710_9 (AE001710)
           conserved hypothetical protein [Thermotoga maritima]
           Length = 150
           
 Score = 99.1 bits (243), Expect = 2e-20
 Identities = 51/109 (46%), Positives = 71/109 (64%), Gaps = 2/109 (1%)

Query: 13  PSPGTIYPILTSLKKSGLIKSIGEGKRDKKLYSITEKGLKYLEEHKEELREALELVEKFK 72
           PSPG +YPIL+SL+K   I++  EGKR  K+Y +T+KG KYLEEHKEE+++AL+  E+F+
Sbjct: 39  PSPGALYPILSSLRKQKYIETYNEGKR--KVYRLTDKGRKYLEEHKEEIKKALDFAERFR 96

Query: 73  EFSNLGGRELAKVVKDILDSIDKLSEEQKEALAFEISEFTRRVRLILLG 121
            FS + G  L  VV  I  +   L+ EQK+ L     +F R V  I+ G
Sbjct: 97  VFSEICGLSLRNVVDVIFKNAKDLTPEQKKKLKHATEDFERNVYNIIYG 145


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.314    0.137    0.363 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45980648
Number of Sequences: 2977
Number of extensions: 1736023
Number of successful extensions: 10434
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10430
Number of HSP's gapped (non-prelim): 3
length of query: 132
length of database: 189,106,746
effective HSP length: 58
effective length of query: 74
effective length of database: 154,394,500
effective search space: 11425193000
effective search space used: 11425193000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 160 (66.7 bits)