BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1924 (drrB) DE:daunorubicin resistance membrane protein
(drrB)
         (257 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75108 daunorubicin resistance membrane protein (drrb) PAB1...   506  e-143
pir||A71081 hypothetical protein PH0911 - Pyrococcus horikoshii ...   396  e-109
pir||E72257 hypothetical protein TM1404 - Thermotoga maritima (s...   296  2e-79
gi|11499467 daunorubicin resistance membrane protein (drrB) [Arc...   280  1e-74
pir||B69012 probable membrane protein MTH1092 - Methanobacterium...   185  5e-46
gb|AAK42314.1| Membrane conserved hypothetical protein [Sulfolob...   146  2e-34
emb|CAC11999.1| (AL445065) conserved hypothetical membrane prote...   123  2e-27
gi|11465787 hypothetical chloroplast ORF 38. [Porphyra purpurea]...   113  2e-24
pir||C72492 probable membrane protein APE2578 - Aeropyrum pernix...   112  5e-24
pir||S74047 hypothetical protein c0111 - Sulfolobus solfataricus...   111  7e-24
pir||S76277 ycf38 protein - Synechocystis sp. (strain PCC 6803) ...   109  4e-23
pir||A83294 probable permease of ABC-2 transporter PA2811 [impor...   107  2e-22
pir||G82303 probable permease VC0590 [imported] - Vibrio cholera...   103  3e-21
pir||A69065 conserved hypothetical protein MTH1486 - Methanobact...   101  1e-20
gi|11467311 ycf38 [Cyanophora paradoxa] >gi|1351764|sp|P48278|YC...    98  1e-19
gb|AAC44358.1| (U43537) membrane protein involved in mithramycin...    96  3e-19
sp|P36880|YADH_ECOLI HYPOTHETICAL 28.5 KD PROTEIN IN HPT-PAND IN...    94  2e-18
pir||F82707 conserved hypothetical protein XF1222 [imported] - X...    90  2e-17
emb|CAC11371.1| (AL445063) conserved hypothetical protein [Therm...    85  6e-16
sp|P75774|YBHR_ECOLI HYPOTHETICAL 41.6 KDA PROTEIN IN MOAE-RHLE ...    85  8e-16
pir||A75076 membrane protein PAB1704 - Pyrococcus abyssi (strain...    84  1e-15
pir||T36506 probable ABC-transport system transmembrane componen...    83  2e-15
emb|CAB94553.1| (AL359152) putative ABC transporter, integral me...    83  3e-15
pir||B72484 hypothetical protein APE2514 - Aeropyrum pernix (str...    82  5e-15
sp|O52619|NODJ_RHIME NODULATION PROTEIN J >gi|2809542|gb|AAB9776...    79  5e-14
sp|P06755|NODJ_RHILV NODULATION PROTEIN J >gi|95240|pir||S10231 ...    77  2e-13
sp|P72336|NODJ_RHIS3 NODULATION PROTEIN J >gi|1531622|gb|AAB1689...    76  3e-13
pir||B71197 hypothetical protein PH1848 - Pyrococcus horikoshii ...    76  3e-13
pir||B24400 nodulation protein nodJ - Rhizobium leguminosarum pl...    76  5e-13
sp|P32011|DRRB_STRPE DAUNORUBICIN RESISTANCE TRANSMEMBRANE PROTE...    75  1e-12
dbj|BAA35451.1| (D90716) Hypothetical 41.1 kd protein in rhsB-pi...    75  1e-12
sp|P24144|NODJ_RHILT NODULATION PROTEIN J >gi|78055|pir||S08617 ...    74  2e-12
sp|P50333|NODJ_RHIGA NODULATION PROTEIN J >gi|1403527|emb|CAA608...    73  3e-12
emb|CAC08413.1| (AL392178) putative ABC transport system integra...    72  6e-12
pir||T50567 probable ABC-type transport protein, transmembrane c...    71  1e-11
pir||S32909 hypothetical protein 5 - Streptomyces antibioticus >...    71  2e-11
pir||F70984 probable drrC protein - Mycobacterium tuberculosis (...    70  2e-11
pir||E70501 probable transmembrane protein - Mycobacterium tuber...    69  4e-11
emb|CAA75762.1| (Y15759) ORF2 [Streptomyces rochei]                    69  4e-11
pir||B72270 conserved hypothetical protein - Thermotoga maritima...    69  4e-11
pir||T36343 probable ABC-type transport system transmembrane pro...    69  7e-11
pir||S45205 nodulation protein homolog - Escherichia coli >gi|47...    68  9e-11

>pir||D75108 daunorubicin resistance membrane protein (drrb) PAB1924 -
           Pyrococcus abyssi (strain Orsay)
           >gi|5458092|emb|CAB49581.1| (AJ248285) daunorubicin
           resistance membrane protein (drrB) [Pyrococcus abyssi]
           Length = 257
           
 Score =  506 bits (1290), Expect = e-143
 Identities = 257/257 (100%), Positives = 257/257 (100%)

Query: 1   MKSMRVLMTMVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVD 60
           MKSMRVLMTMVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVD
Sbjct: 1   MKSMRVLMTMVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVD 60

Query: 61  YMTYLVPGIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMAL 120
           YMTYLVPGIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMAL
Sbjct: 61  YMTYLVPGIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMAL 120

Query: 121 IQGTIILALSFTLADLKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLM 180
           IQGTIILALSFTLADLKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLM
Sbjct: 121 IQGTIILALSFTLADLKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLM 180

Query: 181 LPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLA 240
           LPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLA
Sbjct: 181 LPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLA 240

Query: 241 VIFVGIAAVEFRKATID 257
           VIFVGIAAVEFRKATID
Sbjct: 241 VIFVGIAAVEFRKATID 257


>pir||A71081 hypothetical protein PH0911 - Pyrococcus horikoshii
           >gi|3257324|dbj|BAA30007.1| (AP000004) 257aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 257
           
 Score =  396 bits (1007), Expect = e-109
 Identities = 181/254 (71%), Positives = 226/254 (88%)

Query: 1   MKSMRVLMTMVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVD 60
           M+ M V +TM+YRELKRFIRS +R++GS+LNPL+WLIFFGKGW+G FNFP A  IFGGVD
Sbjct: 1   MEEMNVFLTMIYRELKRFIRSPSRIIGSILNPLLWLIFFGKGWSGVFNFPMATRIFGGVD 60

Query: 61  YMTYLVPGIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMAL 120
           YMTYLVPG+V MTVF+M F+QG+T+IWD+QFGF+KE+LVAPASRVE+I+GR  GGA++A+
Sbjct: 61  YMTYLVPGVVVMTVFDMSFLQGLTIIWDKQFGFMKEILVAPASRVESILGRITGGAIVAM 120

Query: 121 IQGTIILALSFTLADLKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLM 180
           IQG I++ALSF +A+LK+SGV+PTL+LAF VG+A++G+G+A+A++M+SMEGFQIIV MLM
Sbjct: 121 IQGFIMVALSFIVANLKVSGVIPTLILAFFVGVAIAGLGVAVALKMSSMEGFQIIVMMLM 180

Query: 181 LPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLA 240
           LPM FLSGAFYP+ TMP WMQ+LAKINPLTYAVDGARYYLAG+ PTF +  DW VL LLA
Sbjct: 181 LPMMFLSGAFYPVRTMPNWMQWLAKINPLTYAVDGARYYLAGVTPTFGIMQDWIVLILLA 240

Query: 241 VIFVGIAAVEFRKA 254
           ++F G A +EFRKA
Sbjct: 241 LVFAGFAGLEFRKA 254


>pir||E72257 hypothetical protein TM1404 - Thermotoga maritima (strain MSB8)
           >gi|4981968|gb|AAD36475.1|AE001793_5 (AE001793)
           antibiotic ABC transporter, transmembrane protein,
           putative [Thermotoga maritima]
           Length = 256
           
 Score =  296 bits (749), Expect = 2e-79
 Identities = 138/255 (54%), Positives = 193/255 (75%), Gaps = 2/255 (0%)

Query: 4   MRVLMTMVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVDYMT 63
           M   +TM+YR+  RF+RSR+RV+G ++NPLIW+IFFG GW+  F+ P AKM+FGGVDY+T
Sbjct: 1   MAAFVTMIYRQFMRFLRSRSRVIGMIINPLIWIIFFGLGWSKVFDNPWAKMMFGGVDYLT 60

Query: 64  YLVPGIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMALIQG 123
           YL PGI AMTVFNM F+ G++LIWD+QFGF KE+LVAP+SR  +I GR +G A++ ++QG
Sbjct: 61  YLAPGIFAMTVFNMSFISGVSLIWDKQFGFFKEVLVAPSSRRLSITGRIVGDAIVTVLQG 120

Query: 124 TIILALSFTLAD-LKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLP 182
            IIL  ++ LA+ LK+SG++P L + FL+ + ++  G+A+A++M S EGFQ+I+  LM+P
Sbjct: 121 LIILVFNYFLAESLKISGLLPALAVGFLMSVTIASFGIALALKMESTEGFQMIMMTLMMP 180

Query: 183 MTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGIN-PTFSLAIDWGVLSLLAV 241
           + FLSGA YPI +MP WM+ LA INPLTYAVD +R YL G     FS  +DWG+LS+L +
Sbjct: 181 LVFLSGAMYPIDSMPNWMKALAYINPLTYAVDASRGYLVGEKVMKFSFGLDWGILSILML 240

Query: 242 IFVGIAAVEFRKATI 256
           + + +A   F +A I
Sbjct: 241 VGLILAMESFERARI 255


>gi|11499467 daunorubicin resistance membrane protein (drrB) [Archaeoglobus
           fulgidus] >gi|7483281|pir||B69485 daunorubicin
           resistance membrane protein (drrB) homolog -
           Archaeoglobus fulgidus >gi|2648660|gb|AAB89369.1|
           (AE000972) daunorubicin resistance membrane protein
           (drrB) [Archaeoglobus fulgidus]
           Length = 251
           
 Score =  280 bits (709), Expect = 1e-74
 Identities = 135/254 (53%), Positives = 184/254 (72%), Gaps = 3/254 (1%)

Query: 4   MRVLMTMVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVDYMT 63
           MR    MVYR++KRF+R+R+RV G ++NPL+WL FFG GW+ AF  P    IFGGVDY+T
Sbjct: 1   MRAFEIMVYRQIKRFLRARSRVAGMIINPLVWLTFFGIGWSRAFRDPS---IFGGVDYLT 57

Query: 64  YLVPGIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMALIQG 123
           YL PGI AMTVFN  F+ GI++IWDR+FGFLKE+LVAPASR E I GR  G + +A +QG
Sbjct: 58  YLSPGIFAMTVFNQSFVSGISVIWDREFGFLKEVLVAPASRKETIAGRIFGDSAVATLQG 117

Query: 124 TIILALSFTLADLKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPM 183
            IILAL+F +A + + GV+P L + F++ +A S  G++IA RM SMEGFQ+I+ ++MLP+
Sbjct: 118 AIILALTFFIARINIFGVIPALGVGFVLAVAFSSFGVSIAARMRSMEGFQMIMALVMLPL 177

Query: 184 TFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVIF 243
            FLSGA YPI+ MP WM+ LA +NPLTYAV+ +R  L G++  F L     +L  L  + 
Sbjct: 178 IFLSGAIYPIAFMPAWMKVLALLNPLTYAVESSRVLLTGVSGIFPLDQSLLILLSLTALM 237

Query: 244 VGIAAVEFRKATID 257
           + +A V F ++T++
Sbjct: 238 LYVAMVSFERSTVE 251


>pir||B69012 probable membrane protein MTH1092 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2622193|gb|AAB85581.1| (AE000880) putative membrane
           protein [Methanobacterium thermoautotrophicum]
           Length = 257
           
 Score =  185 bits (465), Expect = 5e-46
 Identities = 98/254 (38%), Positives = 156/254 (60%), Gaps = 7/254 (2%)

Query: 1   MKSMRVLMTMVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVD 60
           M  +  + T+  RE+KRF R R+R++ S++ PL+WLI FG G   A  F G     GG  
Sbjct: 4   MAEIEGIYTIWLREMKRFFRYRSRIVTSIVTPLLWLIIFGTGLGAAVRFGGVP---GG-- 58

Query: 61  YMTYLVPGIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMAL 120
           Y  ++ PGI+  TV       G+++I DRQ+GFLKE+LVAP SR   ++G+++G +  ++
Sbjct: 59  YKAFIYPGIIGQTVLFTSIFSGVSVIIDRQYGFLKEILVAPISRESMVVGKALGISTASM 118

Query: 121 IQGTIILALSFTLA-DLKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTML 179
           IQ  I+LALSF +   +     + ++++A ++ + + G+G+ IA    SMEGF +I++ +
Sbjct: 119 IQAAILLALSFIVGITMSPQCFIVSMVIALIISMGLGGLGLVIAAFTDSMEGFNLIMSFI 178

Query: 180 MLPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLL 239
           +LP+  LSGA +PI+ +P W+Q    INPLTYAVD  R+ +        L ++  V+++ 
Sbjct: 179 VLPIFLLSGALFPITGLPAWLQGAVYINPLTYAVDALRFTILR-RSVLPLEVNLLVITIF 237

Query: 240 AVIFVGIAAVEFRK 253
           AVI V IAA  F +
Sbjct: 238 AVIAVLIAAFLFNR 251


>gb|AAK42314.1| Membrane conserved hypothetical protein [Sulfolobus solfataricus]
           Length = 290
           
 Score =  146 bits (365), Expect = 2e-34
 Identities = 89/270 (32%), Positives = 137/270 (49%), Gaps = 29/270 (10%)

Query: 7   LMTMVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGW-------AGAFNFPGA------- 52
           L T+  RELK++ ++   +L SL+ P+ W+  FGK            FN PG        
Sbjct: 15  LWTLASRELKKWYKAPVILLLSLIQPIFWIGIFGKAMNLGSIFTETTFNIPGLTIPKQVL 74

Query: 53  --------KMIFGGVDYMTYLVPGIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASR 104
                   K  FG  DY ++L  G+++  V       G++++WDR+ G L  +L  P  R
Sbjct: 75  DQIGLEILKQTFGTTDYFSFLAAGMLSFIVLFTSMQSGMSIVWDRRLGVLDRILTTPVPR 134

Query: 105 VEAIIGRSIGGALMALIQGTIILALSFTLADLKLSGVVPTLLLA-----FLVGIAVSGMG 159
              IIG+ +   + +L+Q TI+L ++  L       + P   L      FL+   +S + 
Sbjct: 135 GNIIIGKVLSAVIRSLVQATIVLVVAVLLGMTFAPEINPLDFLGVYAALFLMSFGLSSLF 194

Query: 160 MAIAMRMTSMEGFQIIVTMLMLPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYY 219
           + +A+R TS E    I+ +L LP+ F S AFYP+ +MP W++ +A INPLTY+   AR  
Sbjct: 195 LMLALRATSWESQMAIMNLLNLPLLFTSNAFYPVKSMPYWLKPVAYINPLTYSNGVARGM 254

Query: 220 LAGINPTFSLAIDWGVLSLLAVIFVGIAAV 249
           L GI+   +LAID+  L L A+I   I  V
Sbjct: 255 LLGIST--NLAIDFLYLGLFAIILSTIGIV 282


>emb|CAC11999.1| (AL445065) conserved hypothetical membrane protein [Thermoplasma
           acidophilum]
           Length = 267
           
 Score =  123 bits (306), Expect = 2e-27
 Identities = 78/235 (33%), Positives = 123/235 (52%), Gaps = 11/235 (4%)

Query: 4   MRVLMTMVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGA-FNFPGAKMIFGGV-DY 61
           M  L  +  RE+K++ R+   ++  LL P+ W+I FG  +  A F  P     F G  DY
Sbjct: 1   MSGLAPLTLREIKKWYRNPVYLIVGLLQPVFWIILFGSAFDIAKFGGPFVSSFFDGAKDY 60

Query: 62  MTYLVPGIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMALI 121
           +TY++ GI+ +T    G   GI +IWDR+ G L+  LV+P  R   +  R I   +  ++
Sbjct: 61  ITYMIGGILTITGLFTGMFSGINIIWDRRLGILQRFLVSPIKRSSIVFSRIIASVVRIIV 120

Query: 122 QGTIILALSFTLAD-LKLSGVVPTLLLAFLVGIAV-------SGMGMAIAMRMTSMEGFQ 173
           Q  I++A++  + D LK+S    T+  AFL+  AV       S +   IA+RMT ME   
Sbjct: 121 QVVILVAIALIIPDGLKISSSF-TIEDAFLMIAAVLMISFIFSSIFSIIAIRMTRMETIM 179

Query: 174 IIVTMLMLPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFS 228
            I  ++ LP+ F S A +P   M  W+  +AK NP++++ +  R  +   N T S
Sbjct: 180 GITNLVNLPLMFASYALFPPDLMVSWLSTVAKYNPVSWSAESIRLLIIYGNLTGS 234


>gi|11465787 hypothetical chloroplast ORF 38. [Porphyra purpurea]
           >gi|1723341|sp|P51321|YC38_PORPU HYPOTHETICAL 32.4 KD
           PROTEIN YCF38 (ORF291) >gi|2147562|pir||S73242
           hypothetical protein 38 - red alga (Porphyra purpurea)
           chloroplast >gi|1276787|gb|AAC08207.1| (U38804)
           hypothetical chloroplast ORF 38. [Porphyra purpurea]
           Length = 291
           
 Score =  113 bits (281), Expect = 2e-24
 Identities = 71/239 (29%), Positives = 118/239 (48%), Gaps = 10/239 (4%)

Query: 10  MVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVDYMTYLVPGI 69
           +V R   +  R  A ++  ++ PL+WL+ FG    G F      +      Y  +L  GI
Sbjct: 34  LVQRLFLQVWRRPATLMAGIIQPLLWLVLFG----GLFCNAPVNLFTINTSYNRFLSSGI 89

Query: 70  VAMTVFNMGFMQGITLIWDRQFGFLKELLVAPA-SRVEAIIGRSIGGALMALIQGTIILA 128
           +  T F      G+ L++DR+FGFL  LL AP  SR   I   +     ++LIQ   I+ 
Sbjct: 90  IVFTSFTGALNSGLPLMFDREFGFLNRLLTAPLISRTSIIFSSATFMTCLSLIQVIFIVI 149

Query: 129 LSFTLADLKLSGVVPTL--LLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFL 186
            S  + +  LS     +  L+  LV + V+ + +A++  +        ++ ++ LP  F 
Sbjct: 150 ASLFMGNSPLSSNSTLIFALIVLLVTVGVTMLSLALSFTLPGHIELLALILVVNLPFLFS 209

Query: 187 SGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFS---LAIDWGVLSLLAVI 242
           S A  P+  MP W+Q +A +NPL+YA++G RY  +  +  F+   + I WG +SL  +I
Sbjct: 210 STALAPLYFMPPWLQLIASLNPLSYAIEGIRYIYSNTDWNFTESVIKISWGDISLGQII 268


>pir||C72492 probable membrane protein APE2578 - Aeropyrum pernix (strain K1)
           >gi|5106284|dbj|BAA81595.1| (AP000064) 283aa long
           hypothetical membrane protein [Aeropyrum pernix]
           Length = 283
           
 Score =  112 bits (277), Expect = 5e-24
 Identities = 65/251 (25%), Positives = 122/251 (47%), Gaps = 28/251 (11%)

Query: 8   MTMVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGW-----------------AGAFNFP 50
           + +  RE+ +++  R+ +L S++ P+ W+  FGK +                 A A    
Sbjct: 9   LILTKREIIKWVNRRSVLLVSIITPIFWIALFGKSFNLYNLVQTSDPSLNPAVAEALRTV 68

Query: 51  GA---KMIFGGVDYMTYLVPGIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEA 107
            A   + +FG  DY TY+  G++A+          + +++DR+ G+L  LL +P  R   
Sbjct: 69  MAWRLESVFGTQDYFTYVATGMLAVFSLFQSMFGAVGVVFDRRIGYLTRLLASPIPRFSI 128

Query: 108 IIGRSIGGALMALIQGTIILALSFTLA-----DLKLSGVVPTLLLAFLVGIAVSGMGMAI 162
              + +G      +   I+LA+++ L       + +  +V   L+  L+ + +S +   +
Sbjct: 129 FASKVLGTLFRITVLSLILLAIAYPLGLHLKPGITIIDLVMAWLVLMLMSLGLSSLFTGM 188

Query: 163 AMRMTSMEGFQIIVTMLMLPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAG 222
           A  +T  E    +  ++ LP+ F S A +PI  MP W++ +A++NP+T+A D  RYYL G
Sbjct: 189 AFNITHQEVLFALANLINLPLMFSSSALFPIDLMPNWLKTVAQVNPITHAADLVRYYLVG 248

Query: 223 ---INPTFSLA 230
               +P  S+A
Sbjct: 249 KPLEDPVMSIA 259


>pir||S74047 hypothetical protein c0111 - Sulfolobus solfataricus
           >gi|1707741|emb|CAA69461.1| (Y08256) orf c01011
           [Sulfolobus solfataricus]
           Length = 192
           
 Score =  111 bits (276), Expect = 7e-24
 Identities = 64/186 (34%), Positives = 101/186 (53%), Gaps = 7/186 (3%)

Query: 69  IVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMALIQGTIILA 128
           +++  V       G++++WDR+ G L  +L  P  R   IIG+ +   + +L+Q TI+L 
Sbjct: 1   MLSFIVLFTSMQSGMSIVWDRRLGVLDRILTTPVPRGNIIIGKVLSAVIRSLVQATIVLV 60

Query: 129 LSFTLADLKLSGVVPTLLLA-----FLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPM 183
           ++  L       + P   L      FL+   +S + + +A+R TS E    I+ +L LP+
Sbjct: 61  VAVLLGMTFAPEINPLDFLGVYAALFLMSFGLSSLFLMLALRATSWESQMAIMNLLNLPL 120

Query: 184 TFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVIF 243
            F S AFYP+ +MP W++ +A INPLTY+   AR  L GI+   +LAID+  L L A+I 
Sbjct: 121 LFTSNAFYPVKSMPYWLKPVAYINPLTYSNGVARGMLLGIST--NLAIDFLYLGLFAIIL 178

Query: 244 VGIAAV 249
             I  V
Sbjct: 179 STIGIV 184


>pir||S76277 ycf38 protein - Synechocystis sp. (strain PCC 6803)
           >gi|1001504|dbj|BAA10129.1| (D64000) Ycf38
           [Synechocystis sp.]
           Length = 294
           
 Score =  109 bits (269), Expect = 4e-23
 Identities = 67/208 (32%), Positives = 112/208 (53%), Gaps = 10/208 (4%)

Query: 20  RSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGG-VDYMTYLVPGIVAMTVFNMG 78
           R    ++  ++ P +WL+ FG  +  A      + +FG  ++Y  +L PGI+  T F+  
Sbjct: 47  RRPTTLVAGIIQPFMWLVLFGALFLNA-----PQGLFGNDLNYAQFLAPGIIVFTAFSGA 101

Query: 79  FMQGITLIWDRQFGFLKELLVAP-ASRVEAIIGRSIGGALMALIQGTIILALSFTL-ADL 136
              G+ +++DR+FGFL  LLVAP ASR   +   ++    ++LIQ  +I+  S  L A L
Sbjct: 102 LNAGLPVMFDREFGFLNRLLVAPLASRYSIVAASTVYIISLSLIQAAVIVGASALLGAGL 161

Query: 137 KLS-GVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFLSGAFYPIST 195
             S G+    L+ FL+ + V+ + + +A  +        ++ +  LP+ F S A  P+  
Sbjct: 162 PNSFGLGMIALIVFLIVLGVTALSLGLAFALPGHIELIAVIFVTNLPLLFASTALAPLDF 221

Query: 196 MPKWMQYLAKINPLTYAVDGARY-YLAG 222
           M  W+Q +A +NPLTYA++  RY YL G
Sbjct: 222 MAHWLQVVASLNPLTYAIEPIRYIYLNG 249


>pir||A83294 probable permease of ABC-2 transporter PA2811 [imported] -
           Pseudomonas aeruginosa (strain PAO1)
           >gi|9948895|gb|AAG06199.1|AE004708_5 (AE004708) probable
           permease of ABC-2 transporter [Pseudomonas aeruginosa]
           Length = 259
           
 Score =  107 bits (264), Expect = 2e-22
 Identities = 72/243 (29%), Positives = 130/243 (52%), Gaps = 12/243 (4%)

Query: 7   LMTMVYRELKRFIRSRAR-VLGSLLNPLIWLIFFGKGWAGAFNFPGAKM-IFGGVDYMTY 64
           L T+VYRE++RF R   + +L   +  +++ + FG       N  G ++   GG  YM Y
Sbjct: 12  LNTIVYREVRRFTRIWPQTLLPPAITMVLYFVIFG-------NLIGRQIGDMGGFTYMEY 64

Query: 65  LVPGIVAMTVFNMGFMQGITLIWDRQFG-FLKELLVAPASRVEAIIGRSIGGALMALIQG 123
           +VPG++ M+V    +   ++  +  +F   ++ELLV+P S    ++G +IGG L  L  G
Sbjct: 65  IVPGLIMMSVITNAYGNVVSSFFGSKFQRSVEELLVSPVSPHTILLGYTIGGVLRGLAVG 124

Query: 124 TIILALSFTLADLKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPM 183
            I+  LS     L++  +  T+L+  L     S  G   A+   + +   II T ++ P+
Sbjct: 125 VIVTMLSLFFTKLQVHHLGITVLVVVLTATIFSLGGFINAVFARNFDDISIIPTFVLTPL 184

Query: 184 TFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINP-TFSLAIDWGVLSLLAVI 242
           T+L G FY I+ +P + Q ++  NP+ + V+  RY + G++     +AI + +L+  AV+
Sbjct: 185 TYLGGVFYSINLLPPFWQTVSLANPILHMVNAFRYGILGVSDIRIGVAIGFMLLA-TAVL 243

Query: 243 FVG 245
           ++G
Sbjct: 244 YLG 246


>pir||G82303 probable permease VC0590 [imported] - Vibrio cholerae (group O1
           strain N16961) >gi|9655021|gb|AAF93757.1| (AE004144)
           permease, putative [Vibrio cholerae]
           Length = 256
           
 Score =  103 bits (254), Expect = 3e-21
 Identities = 66/244 (27%), Positives = 121/244 (49%), Gaps = 17/244 (6%)

Query: 9   TMVYRELKRFIRSRARVL-GSLLNPLIWLIFFGKGWAGAFNFPGAKM-IFGGVDYMTYLV 66
           +++ +E+ RF R   + L    +   ++ I FG       N  G+++    G  YM Y+V
Sbjct: 11  SLLGKEINRFTRIWVQTLVPPAITMTLYFIIFG-------NLIGSRIGQMNGFSYMEYIV 63

Query: 67  PGIVAMTVFNMGFMQGITLIWDRQFGF-LKELLVAPASRVEAIIGRSIGGALMALIQGTI 125
           PG++ M+V    +    +  +  +F   ++ELLVAP      I G  +GG    L+ G +
Sbjct: 64  PGLIMMSVITNSYSNVASSFFSSKFQKNIEELLVAPVPNYVIIAGYVMGGVARGLLVGAM 123

Query: 126 ILALSFTLADLKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTF 185
           + A+S    DL++      +   FL  +  S  G+  A+   + +   I+ T ++ P+T+
Sbjct: 124 VTAVSLLFVDLQVDHWGIIIATVFLTSVVFSLGGLINAVFAKTFDDISIVPTFVLTPLTY 183

Query: 186 LSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVIFVG 245
           L G FY IS +P++ Q ++KINP+ Y V+  RY   G++       D  +++  AV+   
Sbjct: 184 LGGVFYSISLLPEFWQSVSKINPIVYMVNAFRYGFLGVS-------DVDIMTSFAVLMAF 236

Query: 246 IAAV 249
           + A+
Sbjct: 237 VVAL 240


>pir||A69065 conserved hypothetical protein MTH1486 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2622602|gb|AAB85961.1| (AE000909) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 383
           
 Score =  101 bits (248), Expect = 1e-20
 Identities = 61/201 (30%), Positives = 106/201 (52%), Gaps = 2/201 (0%)

Query: 55  IFGGVDYMTYLVPGIVAMTV-FNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSI 113
           I+G V YM +LVP I+AMT+ F+  F  G ++  +R+ G L  L + P S    + G+ I
Sbjct: 181 IYGDVKYMDFLVPAILAMTIMFSCMFGMGQSIAGERERGELARLFMTPTSVATVVGGKII 240

Query: 114 GGALMALIQGTIILALSFTLADLKLSG-VVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGF 172
              ++   +  ++L ++  L  +K++G ++ T+LL  L  +   G G+ I+ R+ + E +
Sbjct: 241 SKLVIESGRALLLLFIAILLFGIKINGSMLLTVLLLILTALCFVGFGIMISARVGTQEDY 300

Query: 173 QIIVTMLMLPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAID 232
             +V    +PM F+SG FYPI TMP   Q +A + PLTYA +  R  +        + ++
Sbjct: 301 MQMVMPFAMPMMFVSGVFYPIETMPWIFQKIAYVVPLTYANNALRAVMLKGAGAGDIMVN 360

Query: 233 WGVLSLLAVIFVGIAAVEFRK 253
             VL    ++F  +    F +
Sbjct: 361 LLVLGGFTLLFFAMGVTRFNR 381


>gi|11467311 ycf38 [Cyanophora paradoxa] >gi|1351764|sp|P48278|YC38_CYAPA
           HYPOTHETICAL 33.3 KD PROTEIN YCF38
           >gi|7484251|pir||T06856 hypothetical protein ycf38 -
           Cyanophora paradoxa cyanelle >gi|1016112|gb|AAA81199.1|
           (U30821) ycf38 gene product [Cyanophora paradoxa]
           Length = 290
           
 Score = 97.5 bits (239), Expect = 1e-19
 Identities = 69/265 (26%), Positives = 129/265 (48%), Gaps = 20/265 (7%)

Query: 1   MKSMRVLMTMVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGA-FNFPGAKMIFGGV 59
           ++ + VL+  ++ +LKR       ++  +L PL+WLI FG  +  A F     +      
Sbjct: 27  IQELFVLVKRLFIQLKR---RPITLISGILQPLLWLILFGALFQKAPFRISNLEN----- 78

Query: 60  DYMTYLVPGIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPA-SRVEAIIGRSIGGALM 118
           +Y+ +  PGI+  T F       + LI+DR+FGFL  LLVAP  SR   +   +   +++
Sbjct: 79  NYLQFFYPGILVFTAFAGSLNSSLPLIFDREFGFLNRLLVAPLNSRFSILFSSAFFISVL 138

Query: 119 ALIQGTIILALSFTLADL--KLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIV 176
           + IQ   I+     L         ++ +    FL+ I ++   + +A+ + +      ++
Sbjct: 139 SFIQVFFIMLFGVFLGIQLPPFKSLIVSFFFLFLLIIGITTFSILLALLLPTHIELIAVI 198

Query: 177 TMLMLPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFS-------- 228
            +L LP+ F S A  P+  MP W+Q ++ +NPLTY ++  R+  +  +  FS        
Sbjct: 199 FVLNLPLLFSSTALAPLDFMPSWLQIISCLNPLTYTIEPIRFLYSHSSWLFSSSLFELSF 258

Query: 229 LAIDWGVLSLLAVIFVGIAAVEFRK 253
            +I+ G   ++ +IF  +  + F+K
Sbjct: 259 FSINIGQSLIILIIFDLVGFLLFKK 283


>gb|AAC44358.1| (U43537) membrane protein involved in mithramycin resistance
           [Streptomyces argillaceus]
           Length = 233
           
 Score = 96.3 bits (236), Expect = 3e-19
 Identities = 69/231 (29%), Positives = 113/231 (48%), Gaps = 15/231 (6%)

Query: 20  RSRARVLGSLLNPLIWLIFFGKGWAGAF--NFPGAKMIFGGVDYMTYLVPGIVAMTVFNM 77
           + R  +L  L+ P +++  FG         + P A  ++         +PG++       
Sbjct: 3   QKRMGLLIGLVQPFVYMALFGPLLVKMLPEDGPAAWQVY---------IPGLLVQLGLFA 53

Query: 78  GFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMALIQGTII--LALSFTLAD 135
             ++   LI D + G+L+ L V PASR+  ++GR +   L   IQ  +I  +AL F L  
Sbjct: 54  TALRRFGLIPDVRSGYLERLRVTPASRLGLLLGRVLWDVLALFIQSVVIVLIALLFGLR- 112

Query: 136 LKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFLSGAFYPIST 195
               GVV  + L  LVGI+++ +  A+AM++TS   F  ++  + LP+  LSG   P++ 
Sbjct: 113 APFGGVVAAIALMMLVGISLAFLSYALAMKLTSEWLFAPVLNAIALPLMLLSGILLPLTY 172

Query: 196 MPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWG-VLSLLAVIFVG 245
            P W+Q +   NPL YAVD  R +  G   +  + +    VL L+ V  VG
Sbjct: 173 APGWLQAIGDANPLRYAVDAMRDFFTGDYTSHHVVVGVAVVLGLMVVSAVG 223


>sp|P36880|YADH_ECOLI HYPOTHETICAL 28.5 KD PROTEIN IN HPT-PAND INTERGENIC REGION
           >gi|7445883|pir||H64735 probable ABC-2-type transport
           protein yadH - Escherichia coli
           >gi|1786320|gb|AAC73239.1| (AE000122) orf, hypothetical
           protein [Escherichia coli K12]
           Length = 256
           
 Score = 93.6 bits (229), Expect = 2e-18
 Identities = 63/234 (26%), Positives = 111/234 (46%), Gaps = 11/234 (4%)

Query: 13  RELKRFIRSRARVL-GSLLNPLIWLIFFGKGWAGAFNFPGAKM-IFGGVDYMTYLVPGIV 70
           +E+ RF+R   + L   ++   ++ I FG       N  G+++    G  YM ++VPG++
Sbjct: 15  KEIHRFMRIWVQTLVPPVITMTLYFIIFG-------NLIGSRIGDMHGFSYMQFIVPGLI 67

Query: 71  AMTVFNMGFMQGITLIWDRQFGF-LKELLVAPASRVEAIIGRSIGGALMALIQGTIILAL 129
            M+V    +    +  +  +F   ++ELLVAP      I G   GG    L  G ++ A+
Sbjct: 68  MMSVITNAYANVASSFFGAKFQRNIEELLVAPVPTHVIIAGYVGGGVARGLFVGILVTAI 127

Query: 130 SFTLADLKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFLSGA 189
           S      ++   V   L   L  +  S  G+   +   + +   ++ T ++ P+T+L G 
Sbjct: 128 SLFFVPFQVHSWVFVALTLVLTAVLFSLAGLLNGVFAKTFDDISLVPTFVLTPLTYLGGV 187

Query: 190 FYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVIF 243
           FY ++ +P + Q L+ +NP+ Y + G RY   GIN    L   +GVL +  V F
Sbjct: 188 FYSLTLLPPFWQGLSHLNPIVYMISGFRYGFLGINDV-PLVTTFGVLVVFIVAF 240


>pir||F82707 conserved hypothetical protein XF1222 [imported] - Xylella
           fastidiosa (strain 9a5c)
           >gi|9106198|gb|AAF84032.1|AE003956_2 (AE003956)
           conserved hypothetical protein [Xylella fastidiosa]
           Length = 259
           
 Score = 90.5 bits (221), Expect = 2e-17
 Identities = 65/251 (25%), Positives = 117/251 (45%), Gaps = 14/251 (5%)

Query: 2   KSMRVLMTMVYRELKRFIRSRARVL-GSLLNPLIWLIFFGKGWAGAFNFPGAKM-IFGGV 59
           +++  L T+V RE++R +R  ++ L    +   ++ + FGK         G ++    G 
Sbjct: 10  RNLTALSTIVRREVRRILRIWSQTLVPPAITMGLYFLIFGK-------LIGTRVGQMDGF 62

Query: 60  DYMTYLVPGIVAMTVFNMGFMQGITLIWDRQFG-FLKELLVAPASRVEAIIGRSIGGALM 118
           DYM ++VPG+V M+V    +    +  +  +FG  ++ELLV+P      + G   G  L 
Sbjct: 63  DYMHFIVPGLVMMSVIQNSYGNISSSFFGAKFGRHVEELLVSPMPNWVILWGYVAGAVLR 122

Query: 119 ALIQGTIILALSFTLADLKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTM 178
            ++ G I++ ++     ++L   + T   A L  I  S  G   A      +   II T 
Sbjct: 123 GVMVGAIVMVIAMYFTPVRLPYPLVTSSTAVLGAIIFSLAGFINATYAKKFDDIAIIPTF 182

Query: 179 LMLPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSL 238
           ++ P+++L G FY +  +P W +     NP+ Y V+  RY L G     S    W   +L
Sbjct: 183 VLTPLSYLGGVFYSVKLLPGWAEAATYANPIFYMVNAFRYGLLG----HSDVPLWKAYAL 238

Query: 239 LAVIFVGIAAV 249
           +     G++A+
Sbjct: 239 MLTFIAGLSAL 249


>emb|CAC11371.1| (AL445063) conserved hypothetical protein [Thermoplasma
           acidophilum]
           Length = 254
           
 Score = 85.4 bits (208), Expect = 6e-16
 Identities = 60/213 (28%), Positives = 108/213 (50%), Gaps = 15/213 (7%)

Query: 54  MIFGG--VDYMTYLVPGIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIG- 110
           +IF G  + Y  +L PG+VAM  F  G + G  L  DR++G  ++LLV P  R++ ++G 
Sbjct: 47  VIFDGRSISYAQFLSPGVVAMQPFIAGSIGGSMLWSDRRWGMFEQLLVGPFHRIDYLLGI 106

Query: 111 ------RSIGGALMALIQGTIILALSFTLADLKLSGVVPTLLLAFLVGIAVSGMGMAIAM 164
                  S+GGAL+  +   ++           L  +V  +++  +  I  + + + +++
Sbjct: 107 IYVSMIFSVGGALLMFLVSYLLTGFVVHY----LMNIVLIVIVLLVSSILFTSLFLVLSV 162

Query: 165 RMTSMEGFQIIVTMLMLPMTFLSGAFYPIS-TMPKWMQYLAKINPLTYAVDGARYYLAGI 223
            + +++ +  +   +   + F S AFYPI+   P  ++ ++  NPLTY VD  R  +   
Sbjct: 163 FIRTIQTYNTVTMFIFFILDFASSAFYPINGRTPLGLRIVSYANPLTYIVDSVRDMMFA- 221

Query: 224 NPTFSLAIDWGVLSLLAVIFVGIAAVEFRKATI 256
             T S  I  G++  L+ IF   AA+ +RKA I
Sbjct: 222 RLTGSDLIYVGIVVALSAIFFVFAALSYRKAKI 254


>sp|P75774|YBHR_ECOLI HYPOTHETICAL 41.6 KDA PROTEIN IN MOAE-RHLE INTERGENIC REGION
           >gi|7467082|pir||H64815 ybhR protein - Escherichia coli
           >gi|1787010|gb|AAC73879.1| (AE000181) orf, hypothetical
           protein [Escherichia coli K12]
           Length = 368
           
 Score = 85.0 bits (207), Expect = 8e-16
 Identities = 54/187 (28%), Positives = 97/187 (50%), Gaps = 7/187 (3%)

Query: 59  VDYMTYLVPGIVAM-TVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGAL 117
           +DY  ++VP ++AM T   +  +  +++  +R+ G L +LLV+P +  +  IG+++   +
Sbjct: 169 LDYKWFVVPSLIAMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQIFIGKAVPALI 228

Query: 118 MALIQGTIILALSFTLADLKLSGVVPTLLLAFLV-GIAVSGMGMAIAMRMTSMEGFQIIV 176
           +A  Q TI+LA+      +  +G +       ++ G+++ G G+ I+   ++ +   I V
Sbjct: 229 VATFQATIVLAIGIWAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISSLCSTQQQAFIGV 288

Query: 177 TMLMLPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVD-GARYYLAGINPTFSLAIDWGV 235
            + M+P   LSG   P+  MP W+Q L  INP+ +  D   + YL       SL I W  
Sbjct: 289 FVFMMPAILLSGYVSPVENMPVWLQNLTWINPIRHFTDITKQIYLKDA----SLDIVWNS 344

Query: 236 LSLLAVI 242
           L  L VI
Sbjct: 345 LWPLLVI 351


>pir||A75076 membrane protein PAB1704 - Pyrococcus abyssi (strain Orsay)
           >gi|5458422|emb|CAB49910.1| (AJ248286) MEMBRANE PROTEIN
           [Pyrococcus abyssi]
           Length = 264
           
 Score = 84.3 bits (205), Expect = 1e-15
 Identities = 58/230 (25%), Positives = 111/230 (48%), Gaps = 14/230 (6%)

Query: 25  VLGSLLNPLIWLIFFGKGWA---GAFNFPGAKMIFGGVDYMTYLVPGIVAMTVFNMGFMQ 81
           +LG+L  P+I+++ FG       G     G +     + Y+ ++ PG++ +   N GF  
Sbjct: 28  LLGTLFEPMIYVLLFGPLMGKLIGDLEVNGMR-----ISYLAFMFPGVLTLVSINQGFRG 82

Query: 82  GITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMALIQGTIILALSFTL---ADLKL 138
             T I DR +G L+ L   P  R    + + +   + A+I   ++  L+  +   A + L
Sbjct: 83  ATTFIQDRFYGGLETLFTLPVPRTVLFMAKILSACIRAIIAMIVLSILTLIIAKDASITL 142

Query: 139 SGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFLSGAFYP--ISTM 196
           +G + +LL+  L+ + +S   + +  +  +      I  +++LPM FLS  FYP  +   
Sbjct: 143 TGFIGSLLVNSLLVVMLSSFMIYLLSKSQNPNLPLAISGIVILPMMFLSTVFYPETVFES 202

Query: 197 PKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVIFVGI 246
            K +  L  INP+T+A +  R ++ G +   S  +   +  LL + F+G+
Sbjct: 203 SKVLSILVSINPMTHASNLVRSFIYGTHLQHSTMV-VSLAYLLVLAFIGM 251


>pir||T36506 probable ABC-transport system transmembrane component -
           Streptomyces coelicolor >gi|5457260|emb|CAB46948.1|
           (AL096822) putative ABC-transporter transmembrane
           component [Streptomyces coelicolor A3(2)]
           Length = 282
           
 Score = 83.5 bits (203), Expect = 2e-15
 Identities = 56/218 (25%), Positives = 99/218 (44%), Gaps = 14/218 (6%)

Query: 29  LLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVDYMTYLVPGIVAMTVFNMGFMQGITLIWD 88
           ++N L++   FG   AG+             DY+ +++PGI+ M+V  +    G+++  D
Sbjct: 65  IMNLLMFTYLFGGALAGSPR-----------DYIQFVLPGILVMSVVMITMYTGVSVNID 113

Query: 89  RQFGFLKELLVAPASRVEAIIGRSIGGALMALIQGTIILALSFTLA---DLKLSGVVPTL 145
            + G    +   P  R  A++G  +G AL   I   ++L++   L    D    GVV  +
Sbjct: 114 IEKGVFDRIRSLPIWRPSAMVGYLLGDALRYTIASVVMLSVGLLLGYRPDGGFVGVVAGI 173

Query: 146 LLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFLSGAFYPISTMPKWMQYLAK 205
            L  L   A S +     + + + +    +  M++ P+TFLS  F    TMP W+Q    
Sbjct: 174 ALLLLFSFAFSWIWTMFGLMLRTEKSVMSVSMMVIFPLTFLSNVFVDPKTMPGWLQAFVN 233

Query: 206 INPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVIF 243
            +P+T+     R  +AG  P   +A   G  +L  ++F
Sbjct: 234 NSPITHLASAVRGLMAGDWPGAEIAWTLGWAALFLLVF 271


>emb|CAB94553.1| (AL359152) putative ABC transporter, integral membrane subunit
           [Streptomyces coelicolor A3(2)]
           Length = 249
           
 Score = 83.1 bits (202), Expect = 3e-15
 Identities = 66/252 (26%), Positives = 120/252 (47%), Gaps = 19/252 (7%)

Query: 10  MVY-RELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVDYMTYLVPG 68
           +VY R L++ +RSR  +L  +L PL++L+FFG       + P    + G       LVPG
Sbjct: 8   LVYGRYLRQSLRSRFALLFGVLMPLLYLLFFGPLLT---DLP----LGGRGSSWQVLVPG 60

Query: 69  IVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMALIQGTIILA 128
           ++           G ++I +   G ++ + V P SR+  ++GR +  A +   Q  +++ 
Sbjct: 61  LLLQLGLFGASFAGFSIIIENGQGVVERMRVTPVSRLALLLGRVLRDATVFAFQAVLLVL 120

Query: 129 LSFTLADLKLSGVVPTLLLAF----LVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMT 184
            +  +    L   +P +L+ F    L+ ++++ +  A+AM++ + + F   +  L +P  
Sbjct: 121 AALVMG---LRAPLPGVLIGFAFVALLTVSLASLSYALAMKVRTPQEFGPTINALTMPSM 177

Query: 185 FLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLA--VI 242
            LSG   P++  P W+  L+ + P  Y VD  R    G   T  +   +GVL  LA   +
Sbjct: 178 LLSGLMLPMTLGPAWLDVLSHLMPFRYLVDAVRDAYVGSYATAHML--YGVLVALAFTAL 235

Query: 243 FVGIAAVEFRKA 254
            V +    FR A
Sbjct: 236 AVTVGTRVFRTA 247


>pir||B72484 hypothetical protein APE2514 - Aeropyrum pernix (strain K1)
           >gi|5106219|dbj|BAA81530.1| (AP000064) 275aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 275
           
 Score = 82.3 bits (200), Expect = 5e-15
 Identities = 67/260 (25%), Positives = 121/260 (45%), Gaps = 11/260 (4%)

Query: 4   MRVLMTMVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGG--VDY 61
           +RV   +  R+ K  I     ++ SL+ P+IW       +          +   G   DY
Sbjct: 7   VRVAKAVALRDFKIRITYIPWIINSLIQPIIWTYILIYTYRAVLGETAQTLQKHGWPADY 66

Query: 62  MTYLVPGIVAMTVFN-MGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMA- 119
           + +L+ G V +++FN + +  G+ +  +R FG L+ + + PASR+  + G SI G L A 
Sbjct: 67  VGFLILGQVLLSLFNALNWRAGMAIQRERWFGTLEIVFLTPASRLVMLTGSSIYGLLDAG 126

Query: 120 --LIQGTIILALSFTLADLKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVT 177
                  +I+ L+ T     ++  +  LL   +  +    MG+ +A           I  
Sbjct: 127 WVSFSAALIVFLA-TGTGFNIADPLAALLSVSMAVVGAVSMGIGLAGLYVLTRSAGPIAI 185

Query: 178 MLMLPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYL---AGINPTFSLAIDWG 234
            +  P+ F SG+ +P+S +P  +QY+    PLTY ++ AR  L   A I+    L +   
Sbjct: 186 AIQHPLRFFSGSSFPLSILPASLQYIGYALPLTYGIEAARISLLEGAPIDEVSPLILRLA 245

Query: 235 VLSLLAVIFVGIAAVEFRKA 254
           ++SL+ +I  GI  V + ++
Sbjct: 246 LISLVGII-AGILFVRWAES 264


>sp|O52619|NODJ_RHIME NODULATION PROTEIN J >gi|2809542|gb|AAB97763.1| (AF043118)
           nodulation protein J [Sinorhizobium meliloti]
           Length = 262
           
 Score = 79.2 bits (192), Expect = 5e-14
 Identities = 62/225 (27%), Positives = 108/225 (47%), Gaps = 15/225 (6%)

Query: 23  ARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFG---GVDYMTYLVPGIVAMTVFNMGF 79
           A +LG+L +PLI+L  FG G        G  M+ G   GV Y+ +L  G+VA +      
Sbjct: 33  ASILGNLADPLIYL--FGLG-------AGLGMMVGRVDGVSYIAFLSAGMVATSAMTAST 83

Query: 80  MQGITLIWDRQFG--FLKELLVAPASRVEAIIGRSIGGALMALIQGTIILALSFTLADLK 137
            + I   + R       + +L    +  + ++G     A  A + GT I  ++ TL   +
Sbjct: 84  FETIYATFARMRAQRTWEAILHTQVTIGDIVLGELAWAATKASLAGTGIGVVAATLGYTE 143

Query: 138 LSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFLSGAFYPISTMP 197
              ++  L +  L G+A + + M +     S E F    T+++ PM FLSGA +P++ +P
Sbjct: 144 WVSLLYALPVIALTGLAFASLAMIVTALAPSYEYFIFYQTLVITPMLFLSGAVFPVNQLP 203

Query: 198 KWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVI 242
              Q++ +I PL +++D  R  + G +P   + +  G L   AV+
Sbjct: 204 GAFQHVTRILPLAHSIDVIRPIMLG-SPLVHVGLHIGALCCYAVV 247


>sp|P06755|NODJ_RHILV NODULATION PROTEIN J >gi|95240|pir||S10231 nodulation protein nodJ
           - Rhizobium leguminosarum plasmid pRL1JI
           >gi|46213|emb|CAA68617.1| (Y00548) nodJ [Rhizobium
           leguminosarum]
           Length = 259
           
 Score = 76.9 bits (186), Expect = 2e-13
 Identities = 59/222 (26%), Positives = 105/222 (46%), Gaps = 9/222 (4%)

Query: 23  ARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVDYMTYLVPGIVAMTVFNMGFMQG 82
           A +LG+L +P+I+L  FG G AG     G      GV Y  +L  G++A +       + 
Sbjct: 30  ASILGNLADPVIYL--FGLG-AGLGVMVGR---VDGVSYTAFLAAGMIATSAMTAATFET 83

Query: 83  ITLIWDRQFG--FLKELLVAPASRVEAIIGRSIGGALMALIQGTIILALSFTLADLKLSG 140
           I   + R  G    + +L    ++ + ++G     A  A + GT I  ++  L       
Sbjct: 84  IYAAFGRMQGQRTWEAMLYTQLTQGDIVVGEMAWAATKASLAGTGIGIVAAMLGYTHWLA 143

Query: 141 VVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFLSGAFYPISTMPKWM 200
           ++  L +  + G+A + +GM +     S + F    T+++ PM FLSGA +P+  +P   
Sbjct: 144 LLYALPVIAITGLAFASLGMVVTALAPSYDYFIFYQTLVITPMLFLSGAVFPVDQLPVAF 203

Query: 201 QYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVI 242
           Q +A   PL +++D  R  + G  P  ++ +  GVL +  V+
Sbjct: 204 QQIAAFLPLAHSIDLIRPTMLG-QPIANVCLHIGVLCIYIVV 244


>sp|P72336|NODJ_RHIS3 NODULATION PROTEIN J >gi|1531622|gb|AAB16899.1| (U53327) NodJ
           [Rhizobium sp. N33]
           Length = 262
           
 Score = 76.5 bits (185), Expect = 3e-13
 Identities = 61/236 (25%), Positives = 109/236 (45%), Gaps = 15/236 (6%)

Query: 23  ARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVD---YMTYLVPGIVAMTVFNMGF 79
           A +LG+L +P+I+L  FG G        G  M+ G V+   Y  +L  G+VA +      
Sbjct: 33  ASILGNLADPMIYL--FGLG-------TGLGMMVGRVEDASYPAFLAAGMVATSAMTAST 83

Query: 80  MQGITLIWDR--QFGFLKELLVAPASRVEAIIGRSIGGALMALIQGTIILALSFTLADLK 137
            + I   + R  +    + +L    +  + ++G  +     A + GT I  ++       
Sbjct: 84  FETIYATFPRMNEQRTWEAILHTQLTLGDIVLGELVWATTRAFLAGTAIAMVAVIAGYSA 143

Query: 138 LSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFLSGAFYPISTMP 197
            S V+  L +  L G+A + + M +     S   F    T+ + PM FLSGA +P++ +P
Sbjct: 144 WSSVLYVLPVIALTGLAFASLAMIVTALAPSYHYFIFYQTLFLTPMLFLSGAVFPVTQLP 203

Query: 198 KWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVIFVGIAAVEFRK 253
              Q++A I PL +++D  R  +    P   +A+  G L + AV+   ++ V  R+
Sbjct: 204 STFQHIAGILPLAHSIDLIRPGMLD-RPAGDIALHIGALCIYAVVPFFLSMVLLRR 258


>pir||B71197 hypothetical protein PH1848 - Pyrococcus horikoshii
           >gi|3258286|dbj|BAA30969.1| (AP000007) 255aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 255
           
 Score = 76.5 bits (185), Expect = 3e-13
 Identities = 65/247 (26%), Positives = 121/247 (48%), Gaps = 15/247 (6%)

Query: 18  FIRSRARVLGSLLNPLIWL---IFFGKGWAGAFNFPGAKMIFGGV-DYMTYLVPGIVAMT 73
           F R   RV+ S+L  L++L   ++FG+   G   F G      G+ DY TY++ G V   
Sbjct: 2   FFRYPLRVISSVLVGLVFLLQFVYFGQAILGG-RFSGLLKNATGIGDYPTYVLIGYVLWW 60

Query: 74  VFNMGFMQGITLIW-DRQFGFLKELLVAPASRVEAIIGRSIGGALMALIQGTIILALSFT 132
           +        +  +  + Q G  +  +++P   ++ +IG ++   +M  I   I+  L   
Sbjct: 61  ISASPMEASVWGVRRELQRGTFESNVISPTGILKMVIGLAVSWMMMDSIIMLIVFGLGVI 120

Query: 133 LADLKLS-----GVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFLS 187
           + ++K+S      V+P LLLAF   +   G G+  A  +  ++    + T+  L + FLS
Sbjct: 121 IFNIKISVIYVIKVIPILLLAFATFL---GFGIVFAGLVVMLKNIGPLATVFELIILFLS 177

Query: 188 GAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVIFVGIA 247
           G F+P+ST+P +++ ++ I PLT+A    R    G + + S+  +   + +L  I+  I+
Sbjct: 178 GVFFPLSTLPDFIRKISWIIPLTHAASAVRKLFLGFSYS-SIISELNAMLILLPIYWMIS 236

Query: 248 AVEFRKA 254
              F+ A
Sbjct: 237 LGVFKWA 243


>pir||B24400 nodulation protein nodJ - Rhizobium leguminosarum plasmid pRL1JI
           >gi|225123|prf||1209215B gene nodJ [Rhizobium
           leguminosarum]
           Length = 259
           
 Score = 75.7 bits (183), Expect = 5e-13
 Identities = 59/222 (26%), Positives = 104/222 (46%), Gaps = 9/222 (4%)

Query: 23  ARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVDYMTYLVPGIVAMTVFNMGFMQG 82
           A +LG+L +P+I+L  FG G AG     G      GV Y  +L  G++A +       + 
Sbjct: 30  ASILGNLADPVIYL--FGLG-AGLGVMVGR---VDGVSYTAFLAAGMIATSAMTAATFET 83

Query: 83  ITLIWDRQFG--FLKELLVAPASRVEAIIGRSIGGALMALIQGTIILALSFTLADLKLSG 140
           I   + R  G    + +L    +  + ++G     A  A + GT I  ++  L       
Sbjct: 84  IYAAFGRMQGQRTWEAMLYTQLTLGDIVVGEMAWAATKASLAGTGIGIVAAMLGYTHWLA 143

Query: 141 VVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFLSGAFYPISTMPKWM 200
           ++  L +  + G+A + +GM +     S + F    T+++ PM FLSGA +P+  +P   
Sbjct: 144 LLYALPVIAITGLAFASLGMVVTALAPSYDYFIFYQTLVITPMLFLSGAVFPVDQLPVAF 203

Query: 201 QYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVI 242
           Q +A   PL +++D  R  + G  P  ++ +  GVL +  V+
Sbjct: 204 QQIAAFLPLAHSIDLIRPTMLG-QPIANVCLHIGVLCIYIVV 244


>sp|P32011|DRRB_STRPE DAUNORUBICIN RESISTANCE TRANSMEMBRANE PROTEIN
           >gi|322313|pir||S27708 daunorubicin resistance protein -
           Streptomyces peucetius >gi|153231|gb|AAA74718.1|
           (M73758) daunorubicin resistance protein [Streptomyces
           peucetius]
           Length = 283
           
 Score = 74.5 bits (180), Expect = 1e-12
 Identities = 57/248 (22%), Positives = 107/248 (42%), Gaps = 10/248 (4%)

Query: 8   MTMVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVDYMTYLVP 67
           +T ++R +  F     +++  +L PLI+L+ F   + GAF            +Y+ + +P
Sbjct: 38  LTHLWRAMMAFKHFPVQLIDIVLMPLIFLLMFTYLFGGAF-------ADSTEEYLQFYLP 90

Query: 68  GIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMALIQGTIIL 127
           G+    V  M    G +L  D   G        P  +   + G  +G  L  ++     +
Sbjct: 91  GVTVQAVVMMTVYTGTSLNTDIHKGVFDRFRTLPFWQPATLAGSLLGDVLRYVVALATTV 150

Query: 128 ALSFTL---ADLKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMT 184
           +L   L   AD    GVV  +L+  + G +VS +  A+ +  +  E       +++ P+ 
Sbjct: 151 SLGLLLGFRADGGFLGVVGAMLVLIVFGFSVSWIFAALGVVASEPERVSGTSMIVLYPLL 210

Query: 185 FLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVIFV 244
           F+S  F    TMP WMQ +   NP+++A   +R  + G    + + +   V + L  +F 
Sbjct: 211 FMSNIFVMPETMPGWMQAIVDANPMSHAATASRELMHGTAGFWDVGLVLCVSAGLVAVFA 270

Query: 245 GIAAVEFR 252
            +    +R
Sbjct: 271 PLTMRLYR 278


>dbj|BAA35451.1| (D90716) Hypothetical 41.1 kd protein in rhsB-pit intergenic
           region. [Escherichia coli]
           Length = 187
           
 Score = 74.5 bits (180), Expect = 1e-12
 Identities = 48/173 (27%), Positives = 87/173 (49%), Gaps = 6/173 (3%)

Query: 72  MTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMALIQGTIILALSF 131
           +T   +  +  +++  +R+ G L +LLV+P +  +  IG+++   ++A  Q TI+LA+  
Sbjct: 2   ITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQIFIGKAVPALIVATFQATIVLAIGI 61

Query: 132 TLADLKLSGVVPTLLLAFLV-GIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFLSGAF 190
               +  +G +       ++ G+++ G G+ I+   ++ +   I V + M+P   LSG  
Sbjct: 62  WAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISSLCSTQQQAFIGVFVFMMPAILLSGYV 121

Query: 191 YPISTMPKWMQYLAKINPLTYAVD-GARYYLAGINPTFSLAIDWGVLSLLAVI 242
            P+  MP W+Q L  INP+ +  D   + YL       SL I W  L  L VI
Sbjct: 122 SPVENMPVWLQNLTWINPIRHFTDITKQIYLKDA----SLDIVWNSLWPLLVI 170


>sp|P24144|NODJ_RHILT NODULATION PROTEIN J >gi|78055|pir||S08617 nodulation protein nodJ
           - Rhizobium leguminosarum bv. trifolii
           >gi|46244|emb|CAA35772.1| (X51411) nodJ protein (AA
           1-262) [Rhizobium leguminosarum]
           Length = 262
           
 Score = 73.7 bits (178), Expect = 2e-12
 Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 9/222 (4%)

Query: 23  ARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVDYMTYLVPGIVAMTVFNMGFMQG 82
           A +LG L  PLI+L  FG G AG     G     GGV Y  +L  G+VA +       + 
Sbjct: 33  ASLLGHLAEPLIYL--FGLG-AGLGVMVGR---VGGVSYTAFLAAGMVATSAMTAATFET 86

Query: 83  ITLIWDRQFG--FLKELLVAPASRVEAIIGRSIGGALMALIQGTIILALSFTLADLKLSG 140
           I   + R  G    + +L       + ++G     A  A + G  I  ++  L   +   
Sbjct: 87  IYAAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGYTQWLS 146

Query: 141 VVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFLSGAFYPISTMPKWM 200
           ++  L +  L G+A + +GM +     S + F    T+++ P+ FLSGA +P+  +P   
Sbjct: 147 LLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVF 206

Query: 201 QYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVI 242
           Q  A+  PL++++D  R  + G +P   +    G L +  VI
Sbjct: 207 QTAARFLPLSHSIDLIRPIMLG-HPVVDVCQHVGALCIYIVI 247


>sp|P50333|NODJ_RHIGA NODULATION PROTEIN J >gi|1403527|emb|CAA60882.1| (X87578) nodJ
           [Rhizobium galegae]
           Length = 262
           
 Score = 73.4 bits (177), Expect = 3e-12
 Identities = 57/234 (24%), Positives = 105/234 (44%), Gaps = 11/234 (4%)

Query: 23  ARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVDYMTYLVPGIVAMTVFNMGFMQG 82
           A +LG+L +P+I++   G G              GGV Y  +L  G+VA +       + 
Sbjct: 33  ASLLGNLADPMIYIFGLGSGLGVMLGN------VGGVSYSAFLAAGMVATSAMTASTFET 86

Query: 83  I--TLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMALIQGTIILALSFTLADLKLSG 140
           I  T    R     + +L    +  + ++G     A  A + GT I  ++ TLA  +   
Sbjct: 87  IYATFARMRDHRTWEAMLYTKLTLGDIVLGEMAWAATKASLAGTAIGIVTATLAYSEWDS 146

Query: 141 VVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFLSGAFYPISTMPKWM 200
           ++    +  L G+A + + M +A    S +      ++++ PM  LSG+ +P+  +   +
Sbjct: 147 LIYVFPVIALTGLAFASLSMVVAALAPSYDYLVFYQSLVITPMLVLSGSVFPVEQLSPML 206

Query: 201 QYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVI--FVGIAAVEFR 252
           Q +  + PL +++D  R  + G +P   + +  G L L  V+  FV IA +  R
Sbjct: 207 QRITHLLPLAHSIDLIRPAMLG-HPVPDITLHLGALCLYIVLPFFVSIALLRRR 259


>emb|CAC08413.1| (AL392178) putative ABC transport system integral membrane protein
           [Streptomyces coelicolor]
           Length = 262
           
 Score = 72.2 bits (174), Expect = 6e-12
 Identities = 65/251 (25%), Positives = 117/251 (45%), Gaps = 15/251 (5%)

Query: 3   SMRVLMTMVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGG--VD 60
           ++R   TM+ R L    R  +  L  LL P++ L+ F   +  A +   A +  GG   D
Sbjct: 7   AVRDSSTMLRRNLLHARRYPSLTLNLLLTPVMLLLLFVYVFGDAMS---AGIGGGGDRSD 63

Query: 61  YMTYLVPGIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMAL 120
           Y++YLVPG++ MT+ +      +++  D   G +         R   ++G  IG  + ++
Sbjct: 64  YVSYLVPGLLLMTIGSTTIGTAVSVSNDMTEGIIARFRTMAIHRGSVLVGHVIGSVVQSI 123

Query: 121 IQ----GTIILALSFTLADLKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQI-I 175
           +     G + +A+ F   D      +    L  L  +A++ + + + +   + E      
Sbjct: 124 MSVVLVGAVGVAIGFRSTDATALEWLAAFGLLLLFTLALTWIAVGMGLISPNAEAASNNA 183

Query: 176 VTMLMLPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYL--AGINPTFSLAIDW 233
           + ++ LP+  +S AF PI +MP W Q +A+  P T A++  R  L   GI     LA+ W
Sbjct: 184 LPLIFLPL--ISSAFVPIDSMPGWFQPIAEYQPFTPAIETLRGLLLGTGIGHNGWLALGW 241

Query: 234 GVLSLLAVIFV 244
             L+L A+ +V
Sbjct: 242 -CLALTALGYV 251


>pir||T50567 probable ABC-type transport protein, transmembrane component
           [imported] - Streptomyces coelicolor
           >gi|6469243|emb|CAB61704.1| (AL133220) probable
           ABC-transporter, transmembrane component. [Streptomyces
           coelicolor A3(2)]
           Length = 274
           
 Score = 71.4 bits (172), Expect = 1e-11
 Identities = 55/252 (21%), Positives = 111/252 (43%), Gaps = 7/252 (2%)

Query: 4   MRVLMTMVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVDYMT 63
           +R    ++ R L    +    +  ++L P+++ + F   + G+    G  +  G   Y+ 
Sbjct: 24  LRHTSALIRRNLLWIRQDPESMFDAILFPIVFTLLFVYVFGGSI---GQSLGGGQQAYVQ 80

Query: 64  YLVPGIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMALIQG 123
           Y++PG++AM   NM    G     D   G +      P  R   +  + I   L+ ++  
Sbjct: 81  YVIPGLMAMMGMNMAQGVGTGFNQDFNSGVMDRFRSLPIGRGSVLFAK-IAVELLRMLFA 139

Query: 124 TIILALSFTLADLKLS---GVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLM 180
           T +L +   L    ++   G++ ++ L+ + G A+  + + + + M + +  Q +  +++
Sbjct: 140 TAVLMVVAVLVGFDITDWAGLLASVGLSAVFGSALMWVFLTLGVVMKNAQSVQAMGFLVL 199

Query: 181 LPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLA 240
           +P+ F S  F P  +MP W+Q     NPL+   D AR  + G      L +     + L 
Sbjct: 200 MPLQFGSSIFAPTDSMPGWLQSFTDYNPLSSLADTARGLMLGGPVAHDLWVTLAWSAALT 259

Query: 241 VIFVGIAAVEFR 252
            +   IA  +FR
Sbjct: 260 AVMAPIAIHKFR 271


>pir||S32909 hypothetical protein 5 - Streptomyces antibioticus
           >gi|153383|gb|AAA26794.1| (L06249) membrane protein
           [Streptomyces antibioticus]
           Length = 273
           
 Score = 70.6 bits (170), Expect = 2e-11
 Identities = 59/249 (23%), Positives = 113/249 (44%), Gaps = 13/249 (5%)

Query: 10  MVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVD-YMTYLVPG 68
           ++ R L    +    +  ++L P+++ + F   + G+      K + GG + Y+ Y+VPG
Sbjct: 29  LIRRNLLWIRQDPESMFDAILFPVVFTLLFVYVFGGSIG----KSLGGGQEQYVQYVVPG 84

Query: 69  IVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMALIQGTIILA 128
           ++AM   NM    G     D   G +      P  R   +  + I   LM ++  T +L 
Sbjct: 85  LLAMMGMNMAQGVGTGFNQDFNSGVMDRFRSLPIGRGSVLFAK-IAVELMRMLFATAVLL 143

Query: 129 LSFTLADLK---LSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTF 185
           +   L   +   L  ++ ++ L+ L G A+  + + + + M + +  Q +  ++++P+ F
Sbjct: 144 VVALLVGYEVGMLERLLGSVALSALFGSALMWVFLTLGVVMKNAQSVQAMGFLVLMPLQF 203

Query: 186 LSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAG--INPTFSLAIDWGVLSLLAVIF 243
            S  F P  +MP W+Q     NPL+   D AR  + G  +     + + W V   L V+ 
Sbjct: 204 GSSIFAPTQSMPGWLQAFTDYNPLSALADCARGLMEGGPVAHALWVTVIWSV--GLTVVM 261

Query: 244 VGIAAVEFR 252
             +A  +FR
Sbjct: 262 APVAIHKFR 270


>pir||F70984 probable drrC protein - Mycobacterium tuberculosis (strain H37RV)
           >gi|1841454|emb|CAB06097.1| (Z83857) drrC [Mycobacterium
           tuberculosis]
           Length = 276
           
 Score = 70.2 bits (169), Expect = 2e-11
 Identities = 61/259 (23%), Positives = 115/259 (43%), Gaps = 36/259 (13%)

Query: 13  RELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVDYMTY-------L 65
           R L R+ R    V+G+++ P+++++                ++ G + Y+         +
Sbjct: 36  RLLTRWARDYITVIGAIVLPILFMVVLN-------------IVLGNLAYVVTHDSGLYSI 82

Query: 66  VPGIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMALIQGTI 125
           VP I             I L+ +R FG L  L V P  R   +I R +  A+  L+   +
Sbjct: 83  VPLIALGAAITGSTFVAIDLMRERSFGLLARLWVLPVHRASGLISRILANAIRTLVTTLV 142

Query: 126 ILALSFTLADLKLSGVVPTLL---LAFLVGIAVSGMGMAIAM---RMTSMEGFQIIVTML 179
           +L     L      G++P+L+   +  ++GIA++ M   +A+   +   +EG +++  + 
Sbjct: 143 MLGTGVVLGFRFRQGLIPSLMWISVPVILGIAIAAMVTTVALYTAQTVVVEGVELVQAIA 202

Query: 180 MLPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLL 239
           +    F S    P+++ P W+Q      P++YA+   R +  G  P  S  I  G+L   
Sbjct: 203 I----FFSTGLVPLNSYPGWIQPFVAHQPVSYAIAAMRGFAMG-GPVLSPMI--GMLVWT 255

Query: 240 AVIFVGIA---AVEFRKAT 255
           A I V  A   A+ +R+A+
Sbjct: 256 AGICVVCAVPLAIGYRRAS 274


>pir||E70501 probable transmembrane protein - Mycobacterium tuberculosis
           (strain H37RV) >gi|2326729|emb|CAB10943.1| (Z98268)
           hypothetical protein Rv1686c [Mycobacterium
           tuberculosis]
           Length = 226
           
 Score = 69.5 bits (167), Expect = 4e-11
 Identities = 46/184 (25%), Positives = 88/184 (47%), Gaps = 3/184 (1%)

Query: 74  VFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMALIQGTIILALSFTL 133
           +F M  +  IT+  +R  G L+ +L  P  R++ + G     ++ A  Q T+   ++F  
Sbjct: 43  LFVMFVITAITMQRERASGTLERILTTPLRRLDLLAGYGTAFSIAAAAQATLACIVAFWF 102

Query: 134 ADLKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQII--VTMLMLPMTFLSGAFY 191
                +G  P  + A  +  AV G+G+ +     +   FQ +  + ++M+P   L+G   
Sbjct: 103 LGFDTAGS-PVWVFAIAIVNAVLGVGLGLLCSAFARTEFQAVQFIPLVMVPQLLLAGIIV 161

Query: 192 PISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVIFVGIAAVEF 251
           P + MP W+++++ + P +YA++  +   A    T     D  V+   AV  + +AAV  
Sbjct: 162 PRALMPTWLEWISNVMPASYALEALQQVGAHPELTGIAVRDVVVVLSFAVASLCLAAVTL 221

Query: 252 RKAT 255
           R+ T
Sbjct: 222 RRRT 225


>emb|CAA75762.1| (Y15759) ORF2 [Streptomyces rochei]
           Length = 284
           
 Score = 69.5 bits (167), Expect = 4e-11
 Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 6/199 (3%)

Query: 49  FPGAKMIFGGVD-YMTYLVPGIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEA 107
           F GA  + G VD Y+ +L+PGI+ M+V  +    G+ +  D   G        P  R   
Sbjct: 77  FGGA--LAGSVDAYIQFLLPGILVMSVVMITMYTGVAINTDIDKGVFDRFRTLPIWRPAP 134

Query: 108 IIGRSIGGALMALIQGTIILALSFTLADLKLSGVVPTLL---LAFLVGIAVSGMGMAIAM 164
           ++G  +G  +   I   ++L +   +      G    LL   L  L   + S +     +
Sbjct: 135 MVGYLLGDVVRYFIASVVMLTVGVVIGYRPGGGATGILLGIALLMLFSFSFSWIWTMFGL 194

Query: 165 RMTSMEGFQIIVTMLMLPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGIN 224
            + + +    +  M++ P+TFLS  F    TMP W+Q     +P+T+     R  +AG  
Sbjct: 195 MLRTEKSVMGVSMMVIFPLTFLSNVFVDPRTMPGWLQAFVNNSPVTHLATAVRELMAGNW 254

Query: 225 PTFSLAIDWGVLSLLAVIF 243
           P   +A   G  +   ++F
Sbjct: 255 PAADIAWSLGWSAAFVLVF 273


>pir||B72270 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
           >gi|4981863|gb|AAD36378.1|AE001785_9 (AE001785)
           conserved hypothetical protein [Thermotoga maritima]
           Length = 271
           
 Score = 69.5 bits (167), Expect = 4e-11
 Identities = 55/231 (23%), Positives = 105/231 (44%), Gaps = 21/231 (9%)

Query: 32  PLIWLIFFGKGWAGAFNFPGA---KMIFGGVDYMTYLVPGIVAMTVFNMGFMQGITLIWD 88
           P++ L +FG        F GA   K I G      YL+ G        + +     L + 
Sbjct: 38  PVVLLYYFGTESGLVRFFYGATNTKNIIG------YLLLGAAYWNYVEVLWGSVFALRYY 91

Query: 89  RQFGFLKELLVAPASRVEAIIGRSIGGALMALIQGTIILALS-------FTLADLKLSGV 141
            + G L+EL + P S +  I+  S+ G +   ++   I+ L+       F L +  L+  
Sbjct: 92  MRIGQLEELFIMPVSSIGYILSWSVFGLVKVTVESVPIIVLAVLLNLMTFNLVEFALAAG 151

Query: 142 VPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFLSGAFYPISTMPKWMQ 201
           V  L +    G+     G+ +  +    EG ++ V++L      + G F+P++ +PK ++
Sbjct: 152 VVILSIIASFGLVFLFFGITLRFK----EGDEL-VSLLGNAAPLIGGMFFPVNVLPKVLE 206

Query: 202 YLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVIFVGIAAVEFR 252
           YLA   P T+ +D  RY+L   N    L  ++ +L +L+++++    + F+
Sbjct: 207 YLAYAFPFTWGLDLTRYFLMKTNTLLDLKKEFIILIVLSLLYLAFGTISFK 257


>pir||T36343 probable ABC-type transport system transmembrane protein -
           Streptomyces coelicolor >gi|4808356|emb|CAB42770.1|
           (AL049841) putative ABC transporter transmembrane
           component [Streptomyces coelicolor A3(2)]
           Length = 260
           
 Score = 68.7 bits (165), Expect = 7e-11
 Identities = 68/243 (27%), Positives = 110/243 (44%), Gaps = 20/243 (8%)

Query: 9   TMVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVDYMTYLVPG 68
           TM  REL R+ R    V+ SL+ P++ L+ FG    G     G        +Y+ YLVPG
Sbjct: 18  TMTRRELARWGRQPVTVVVSLVFPVMLLLMFGYLVGGGRGVSG--------EYVDYLVPG 69

Query: 69  IVAMTV-FNM-GFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMALIQGTII 126
           ++A+T+ F + G M  +T   D   G +      P +    ++GRS    L + +  T +
Sbjct: 70  MLALTMAFGLEGTMIAVTQ--DLNKGVVDRFRSLPMTNGAVLVGRSAADMLQSALGLTAL 127

Query: 127 LALSFTLADLKLSG---VVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPM 183
           + + + L      G    +  + L  L   A+  +G+ +A+     E  Q  V +L+ P+
Sbjct: 128 IGVGYALGWRAHGGPGAFLGAVGLLLLFRFAMLWIGIFLALVAGKPELVQA-VQILVWPV 186

Query: 184 TFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFS---LAIDWGVLSLLA 240
            FLS AF    +MP W+  + + NP++      R    G          A+ W  L+LLA
Sbjct: 187 GFLSNAFATPDSMPGWLGTVVEWNPMSQTATAVRDLFGGPGGESGHLWAAVAW-PLALLA 245

Query: 241 VIF 243
           V F
Sbjct: 246 VFF 248


>pir||S45205 nodulation protein homolog - Escherichia coli
           >gi|473795|dbj|BAA05584.1| (D26562) 'ORF' [Escherichia
           coli]
           Length = 203
           
 Score = 68.3 bits (164), Expect = 9e-11
 Identities = 47/192 (24%), Positives = 89/192 (45%), Gaps = 10/192 (5%)

Query: 13  RELKRFIRSRARVL-GSLLNPLIWLIFFGKGWAGAFNFPGAKM-IFGGVDYMTYLVPGIV 70
           +E+ RF+R   + L   ++   ++ I FG       N  G+++    G  YM ++VPG++
Sbjct: 15  KEIHRFMRIWVQTLVPPVITMTLYFIIFG-------NLIGSRIGDMHGFSYMQFIVPGLI 67

Query: 71  AMTVFNMGFMQGITLIWDRQFGF-LKELLVAPASRVEAIIGRSIGGALMALIQGTIILAL 129
            M+V    +    +  +  +F   ++ELLVAP      I G   GG    L  G ++ A+
Sbjct: 68  MMSVITNAYANVASSFFGAKFQRNIEELLVAPVPTHVIIAGYVGGGVARGLFVGILVTAI 127

Query: 130 SFTLADLKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFLSGA 189
           S      ++   V   L   L  +  S  G+   +   + +   ++ T ++ P+T+L G 
Sbjct: 128 SLFFVPFQVHSWVFVALTLVLTAVLFSLAGLLNGVFAKTFDDISLVPTFVLTPLTYLGGV 187

Query: 190 FYPISTMPKWMQ 201
           FY ++ +P + Q
Sbjct: 188 FYSLTLLPPFWQ 199


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.331    0.144    0.432 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86037987
Number of Sequences: 2977
Number of extensions: 3446388
Number of successful extensions: 11497
Number of sequences better than 1.0e-10: 42
Number of HSP's better than  0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 11424
Number of HSP's gapped (non-prelim): 45
length of query: 257
length of database: 189,106,746
effective HSP length: 51
effective length of query: 206
effective length of database: 158,583,909
effective search space: 32668285254
effective search space used: 32668285254
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 164 (68.3 bits)