BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1924 (drrB) DE:daunorubicin resistance membrane protein
(drrB)
(257 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75108 daunorubicin resistance membrane protein (drrb) PAB1... 506 e-143
pir||A71081 hypothetical protein PH0911 - Pyrococcus horikoshii ... 396 e-109
pir||E72257 hypothetical protein TM1404 - Thermotoga maritima (s... 296 2e-79
gi|11499467 daunorubicin resistance membrane protein (drrB) [Arc... 280 1e-74
pir||B69012 probable membrane protein MTH1092 - Methanobacterium... 185 5e-46
gb|AAK42314.1| Membrane conserved hypothetical protein [Sulfolob... 146 2e-34
emb|CAC11999.1| (AL445065) conserved hypothetical membrane prote... 123 2e-27
gi|11465787 hypothetical chloroplast ORF 38. [Porphyra purpurea]... 113 2e-24
pir||C72492 probable membrane protein APE2578 - Aeropyrum pernix... 112 5e-24
pir||S74047 hypothetical protein c0111 - Sulfolobus solfataricus... 111 7e-24
pir||S76277 ycf38 protein - Synechocystis sp. (strain PCC 6803) ... 109 4e-23
pir||A83294 probable permease of ABC-2 transporter PA2811 [impor... 107 2e-22
pir||G82303 probable permease VC0590 [imported] - Vibrio cholera... 103 3e-21
pir||A69065 conserved hypothetical protein MTH1486 - Methanobact... 101 1e-20
gi|11467311 ycf38 [Cyanophora paradoxa] >gi|1351764|sp|P48278|YC... 98 1e-19
gb|AAC44358.1| (U43537) membrane protein involved in mithramycin... 96 3e-19
sp|P36880|YADH_ECOLI HYPOTHETICAL 28.5 KD PROTEIN IN HPT-PAND IN... 94 2e-18
pir||F82707 conserved hypothetical protein XF1222 [imported] - X... 90 2e-17
emb|CAC11371.1| (AL445063) conserved hypothetical protein [Therm... 85 6e-16
sp|P75774|YBHR_ECOLI HYPOTHETICAL 41.6 KDA PROTEIN IN MOAE-RHLE ... 85 8e-16
pir||A75076 membrane protein PAB1704 - Pyrococcus abyssi (strain... 84 1e-15
pir||T36506 probable ABC-transport system transmembrane componen... 83 2e-15
emb|CAB94553.1| (AL359152) putative ABC transporter, integral me... 83 3e-15
pir||B72484 hypothetical protein APE2514 - Aeropyrum pernix (str... 82 5e-15
sp|O52619|NODJ_RHIME NODULATION PROTEIN J >gi|2809542|gb|AAB9776... 79 5e-14
sp|P06755|NODJ_RHILV NODULATION PROTEIN J >gi|95240|pir||S10231 ... 77 2e-13
sp|P72336|NODJ_RHIS3 NODULATION PROTEIN J >gi|1531622|gb|AAB1689... 76 3e-13
pir||B71197 hypothetical protein PH1848 - Pyrococcus horikoshii ... 76 3e-13
pir||B24400 nodulation protein nodJ - Rhizobium leguminosarum pl... 76 5e-13
sp|P32011|DRRB_STRPE DAUNORUBICIN RESISTANCE TRANSMEMBRANE PROTE... 75 1e-12
dbj|BAA35451.1| (D90716) Hypothetical 41.1 kd protein in rhsB-pi... 75 1e-12
sp|P24144|NODJ_RHILT NODULATION PROTEIN J >gi|78055|pir||S08617 ... 74 2e-12
sp|P50333|NODJ_RHIGA NODULATION PROTEIN J >gi|1403527|emb|CAA608... 73 3e-12
emb|CAC08413.1| (AL392178) putative ABC transport system integra... 72 6e-12
pir||T50567 probable ABC-type transport protein, transmembrane c... 71 1e-11
pir||S32909 hypothetical protein 5 - Streptomyces antibioticus >... 71 2e-11
pir||F70984 probable drrC protein - Mycobacterium tuberculosis (... 70 2e-11
pir||E70501 probable transmembrane protein - Mycobacterium tuber... 69 4e-11
emb|CAA75762.1| (Y15759) ORF2 [Streptomyces rochei] 69 4e-11
pir||B72270 conserved hypothetical protein - Thermotoga maritima... 69 4e-11
pir||T36343 probable ABC-type transport system transmembrane pro... 69 7e-11
pir||S45205 nodulation protein homolog - Escherichia coli >gi|47... 68 9e-11
>pir||D75108 daunorubicin resistance membrane protein (drrb) PAB1924 -
Pyrococcus abyssi (strain Orsay)
>gi|5458092|emb|CAB49581.1| (AJ248285) daunorubicin
resistance membrane protein (drrB) [Pyrococcus abyssi]
Length = 257
Score = 506 bits (1290), Expect = e-143
Identities = 257/257 (100%), Positives = 257/257 (100%)
Query: 1 MKSMRVLMTMVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVD 60
MKSMRVLMTMVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVD
Sbjct: 1 MKSMRVLMTMVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVD 60
Query: 61 YMTYLVPGIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMAL 120
YMTYLVPGIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMAL
Sbjct: 61 YMTYLVPGIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMAL 120
Query: 121 IQGTIILALSFTLADLKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLM 180
IQGTIILALSFTLADLKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLM
Sbjct: 121 IQGTIILALSFTLADLKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLM 180
Query: 181 LPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLA 240
LPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLA
Sbjct: 181 LPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLA 240
Query: 241 VIFVGIAAVEFRKATID 257
VIFVGIAAVEFRKATID
Sbjct: 241 VIFVGIAAVEFRKATID 257
>pir||A71081 hypothetical protein PH0911 - Pyrococcus horikoshii
>gi|3257324|dbj|BAA30007.1| (AP000004) 257aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 257
Score = 396 bits (1007), Expect = e-109
Identities = 181/254 (71%), Positives = 226/254 (88%)
Query: 1 MKSMRVLMTMVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVD 60
M+ M V +TM+YRELKRFIRS +R++GS+LNPL+WLIFFGKGW+G FNFP A IFGGVD
Sbjct: 1 MEEMNVFLTMIYRELKRFIRSPSRIIGSILNPLLWLIFFGKGWSGVFNFPMATRIFGGVD 60
Query: 61 YMTYLVPGIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMAL 120
YMTYLVPG+V MTVF+M F+QG+T+IWD+QFGF+KE+LVAPASRVE+I+GR GGA++A+
Sbjct: 61 YMTYLVPGVVVMTVFDMSFLQGLTIIWDKQFGFMKEILVAPASRVESILGRITGGAIVAM 120
Query: 121 IQGTIILALSFTLADLKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLM 180
IQG I++ALSF +A+LK+SGV+PTL+LAF VG+A++G+G+A+A++M+SMEGFQIIV MLM
Sbjct: 121 IQGFIMVALSFIVANLKVSGVIPTLILAFFVGVAIAGLGVAVALKMSSMEGFQIIVMMLM 180
Query: 181 LPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLA 240
LPM FLSGAFYP+ TMP WMQ+LAKINPLTYAVDGARYYLAG+ PTF + DW VL LLA
Sbjct: 181 LPMMFLSGAFYPVRTMPNWMQWLAKINPLTYAVDGARYYLAGVTPTFGIMQDWIVLILLA 240
Query: 241 VIFVGIAAVEFRKA 254
++F G A +EFRKA
Sbjct: 241 LVFAGFAGLEFRKA 254
>pir||E72257 hypothetical protein TM1404 - Thermotoga maritima (strain MSB8)
>gi|4981968|gb|AAD36475.1|AE001793_5 (AE001793)
antibiotic ABC transporter, transmembrane protein,
putative [Thermotoga maritima]
Length = 256
Score = 296 bits (749), Expect = 2e-79
Identities = 138/255 (54%), Positives = 193/255 (75%), Gaps = 2/255 (0%)
Query: 4 MRVLMTMVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVDYMT 63
M +TM+YR+ RF+RSR+RV+G ++NPLIW+IFFG GW+ F+ P AKM+FGGVDY+T
Sbjct: 1 MAAFVTMIYRQFMRFLRSRSRVIGMIINPLIWIIFFGLGWSKVFDNPWAKMMFGGVDYLT 60
Query: 64 YLVPGIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMALIQG 123
YL PGI AMTVFNM F+ G++LIWD+QFGF KE+LVAP+SR +I GR +G A++ ++QG
Sbjct: 61 YLAPGIFAMTVFNMSFISGVSLIWDKQFGFFKEVLVAPSSRRLSITGRIVGDAIVTVLQG 120
Query: 124 TIILALSFTLAD-LKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLP 182
IIL ++ LA+ LK+SG++P L + FL+ + ++ G+A+A++M S EGFQ+I+ LM+P
Sbjct: 121 LIILVFNYFLAESLKISGLLPALAVGFLMSVTIASFGIALALKMESTEGFQMIMMTLMMP 180
Query: 183 MTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGIN-PTFSLAIDWGVLSLLAV 241
+ FLSGA YPI +MP WM+ LA INPLTYAVD +R YL G FS +DWG+LS+L +
Sbjct: 181 LVFLSGAMYPIDSMPNWMKALAYINPLTYAVDASRGYLVGEKVMKFSFGLDWGILSILML 240
Query: 242 IFVGIAAVEFRKATI 256
+ + +A F +A I
Sbjct: 241 VGLILAMESFERARI 255
>gi|11499467 daunorubicin resistance membrane protein (drrB) [Archaeoglobus
fulgidus] >gi|7483281|pir||B69485 daunorubicin
resistance membrane protein (drrB) homolog -
Archaeoglobus fulgidus >gi|2648660|gb|AAB89369.1|
(AE000972) daunorubicin resistance membrane protein
(drrB) [Archaeoglobus fulgidus]
Length = 251
Score = 280 bits (709), Expect = 1e-74
Identities = 135/254 (53%), Positives = 184/254 (72%), Gaps = 3/254 (1%)
Query: 4 MRVLMTMVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVDYMT 63
MR MVYR++KRF+R+R+RV G ++NPL+WL FFG GW+ AF P IFGGVDY+T
Sbjct: 1 MRAFEIMVYRQIKRFLRARSRVAGMIINPLVWLTFFGIGWSRAFRDPS---IFGGVDYLT 57
Query: 64 YLVPGIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMALIQG 123
YL PGI AMTVFN F+ GI++IWDR+FGFLKE+LVAPASR E I GR G + +A +QG
Sbjct: 58 YLSPGIFAMTVFNQSFVSGISVIWDREFGFLKEVLVAPASRKETIAGRIFGDSAVATLQG 117
Query: 124 TIILALSFTLADLKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPM 183
IILAL+F +A + + GV+P L + F++ +A S G++IA RM SMEGFQ+I+ ++MLP+
Sbjct: 118 AIILALTFFIARINIFGVIPALGVGFVLAVAFSSFGVSIAARMRSMEGFQMIMALVMLPL 177
Query: 184 TFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVIF 243
FLSGA YPI+ MP WM+ LA +NPLTYAV+ +R L G++ F L +L L +
Sbjct: 178 IFLSGAIYPIAFMPAWMKVLALLNPLTYAVESSRVLLTGVSGIFPLDQSLLILLSLTALM 237
Query: 244 VGIAAVEFRKATID 257
+ +A V F ++T++
Sbjct: 238 LYVAMVSFERSTVE 251
>pir||B69012 probable membrane protein MTH1092 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622193|gb|AAB85581.1| (AE000880) putative membrane
protein [Methanobacterium thermoautotrophicum]
Length = 257
Score = 185 bits (465), Expect = 5e-46
Identities = 98/254 (38%), Positives = 156/254 (60%), Gaps = 7/254 (2%)
Query: 1 MKSMRVLMTMVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVD 60
M + + T+ RE+KRF R R+R++ S++ PL+WLI FG G A F G GG
Sbjct: 4 MAEIEGIYTIWLREMKRFFRYRSRIVTSIVTPLLWLIIFGTGLGAAVRFGGVP---GG-- 58
Query: 61 YMTYLVPGIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMAL 120
Y ++ PGI+ TV G+++I DRQ+GFLKE+LVAP SR ++G+++G + ++
Sbjct: 59 YKAFIYPGIIGQTVLFTSIFSGVSVIIDRQYGFLKEILVAPISRESMVVGKALGISTASM 118
Query: 121 IQGTIILALSFTLA-DLKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTML 179
IQ I+LALSF + + + ++++A ++ + + G+G+ IA SMEGF +I++ +
Sbjct: 119 IQAAILLALSFIVGITMSPQCFIVSMVIALIISMGLGGLGLVIAAFTDSMEGFNLIMSFI 178
Query: 180 MLPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLL 239
+LP+ LSGA +PI+ +P W+Q INPLTYAVD R+ + L ++ V+++
Sbjct: 179 VLPIFLLSGALFPITGLPAWLQGAVYINPLTYAVDALRFTILR-RSVLPLEVNLLVITIF 237
Query: 240 AVIFVGIAAVEFRK 253
AVI V IAA F +
Sbjct: 238 AVIAVLIAAFLFNR 251
>gb|AAK42314.1| Membrane conserved hypothetical protein [Sulfolobus solfataricus]
Length = 290
Score = 146 bits (365), Expect = 2e-34
Identities = 89/270 (32%), Positives = 137/270 (49%), Gaps = 29/270 (10%)
Query: 7 LMTMVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGW-------AGAFNFPGA------- 52
L T+ RELK++ ++ +L SL+ P+ W+ FGK FN PG
Sbjct: 15 LWTLASRELKKWYKAPVILLLSLIQPIFWIGIFGKAMNLGSIFTETTFNIPGLTIPKQVL 74
Query: 53 --------KMIFGGVDYMTYLVPGIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASR 104
K FG DY ++L G+++ V G++++WDR+ G L +L P R
Sbjct: 75 DQIGLEILKQTFGTTDYFSFLAAGMLSFIVLFTSMQSGMSIVWDRRLGVLDRILTTPVPR 134
Query: 105 VEAIIGRSIGGALMALIQGTIILALSFTLADLKLSGVVPTLLLA-----FLVGIAVSGMG 159
IIG+ + + +L+Q TI+L ++ L + P L FL+ +S +
Sbjct: 135 GNIIIGKVLSAVIRSLVQATIVLVVAVLLGMTFAPEINPLDFLGVYAALFLMSFGLSSLF 194
Query: 160 MAIAMRMTSMEGFQIIVTMLMLPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYY 219
+ +A+R TS E I+ +L LP+ F S AFYP+ +MP W++ +A INPLTY+ AR
Sbjct: 195 LMLALRATSWESQMAIMNLLNLPLLFTSNAFYPVKSMPYWLKPVAYINPLTYSNGVARGM 254
Query: 220 LAGINPTFSLAIDWGVLSLLAVIFVGIAAV 249
L GI+ +LAID+ L L A+I I V
Sbjct: 255 LLGIST--NLAIDFLYLGLFAIILSTIGIV 282
>emb|CAC11999.1| (AL445065) conserved hypothetical membrane protein [Thermoplasma
acidophilum]
Length = 267
Score = 123 bits (306), Expect = 2e-27
Identities = 78/235 (33%), Positives = 123/235 (52%), Gaps = 11/235 (4%)
Query: 4 MRVLMTMVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGA-FNFPGAKMIFGGV-DY 61
M L + RE+K++ R+ ++ LL P+ W+I FG + A F P F G DY
Sbjct: 1 MSGLAPLTLREIKKWYRNPVYLIVGLLQPVFWIILFGSAFDIAKFGGPFVSSFFDGAKDY 60
Query: 62 MTYLVPGIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMALI 121
+TY++ GI+ +T G GI +IWDR+ G L+ LV+P R + R I + ++
Sbjct: 61 ITYMIGGILTITGLFTGMFSGINIIWDRRLGILQRFLVSPIKRSSIVFSRIIASVVRIIV 120
Query: 122 QGTIILALSFTLAD-LKLSGVVPTLLLAFLVGIAV-------SGMGMAIAMRMTSMEGFQ 173
Q I++A++ + D LK+S T+ AFL+ AV S + IA+RMT ME
Sbjct: 121 QVVILVAIALIIPDGLKISSSF-TIEDAFLMIAAVLMISFIFSSIFSIIAIRMTRMETIM 179
Query: 174 IIVTMLMLPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFS 228
I ++ LP+ F S A +P M W+ +AK NP++++ + R + N T S
Sbjct: 180 GITNLVNLPLMFASYALFPPDLMVSWLSTVAKYNPVSWSAESIRLLIIYGNLTGS 234
>gi|11465787 hypothetical chloroplast ORF 38. [Porphyra purpurea]
>gi|1723341|sp|P51321|YC38_PORPU HYPOTHETICAL 32.4 KD
PROTEIN YCF38 (ORF291) >gi|2147562|pir||S73242
hypothetical protein 38 - red alga (Porphyra purpurea)
chloroplast >gi|1276787|gb|AAC08207.1| (U38804)
hypothetical chloroplast ORF 38. [Porphyra purpurea]
Length = 291
Score = 113 bits (281), Expect = 2e-24
Identities = 71/239 (29%), Positives = 118/239 (48%), Gaps = 10/239 (4%)
Query: 10 MVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVDYMTYLVPGI 69
+V R + R A ++ ++ PL+WL+ FG G F + Y +L GI
Sbjct: 34 LVQRLFLQVWRRPATLMAGIIQPLLWLVLFG----GLFCNAPVNLFTINTSYNRFLSSGI 89
Query: 70 VAMTVFNMGFMQGITLIWDRQFGFLKELLVAPA-SRVEAIIGRSIGGALMALIQGTIILA 128
+ T F G+ L++DR+FGFL LL AP SR I + ++LIQ I+
Sbjct: 90 IVFTSFTGALNSGLPLMFDREFGFLNRLLTAPLISRTSIIFSSATFMTCLSLIQVIFIVI 149
Query: 129 LSFTLADLKLSGVVPTL--LLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFL 186
S + + LS + L+ LV + V+ + +A++ + ++ ++ LP F
Sbjct: 150 ASLFMGNSPLSSNSTLIFALIVLLVTVGVTMLSLALSFTLPGHIELLALILVVNLPFLFS 209
Query: 187 SGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFS---LAIDWGVLSLLAVI 242
S A P+ MP W+Q +A +NPL+YA++G RY + + F+ + I WG +SL +I
Sbjct: 210 STALAPLYFMPPWLQLIASLNPLSYAIEGIRYIYSNTDWNFTESVIKISWGDISLGQII 268
>pir||C72492 probable membrane protein APE2578 - Aeropyrum pernix (strain K1)
>gi|5106284|dbj|BAA81595.1| (AP000064) 283aa long
hypothetical membrane protein [Aeropyrum pernix]
Length = 283
Score = 112 bits (277), Expect = 5e-24
Identities = 65/251 (25%), Positives = 122/251 (47%), Gaps = 28/251 (11%)
Query: 8 MTMVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGW-----------------AGAFNFP 50
+ + RE+ +++ R+ +L S++ P+ W+ FGK + A A
Sbjct: 9 LILTKREIIKWVNRRSVLLVSIITPIFWIALFGKSFNLYNLVQTSDPSLNPAVAEALRTV 68
Query: 51 GA---KMIFGGVDYMTYLVPGIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEA 107
A + +FG DY TY+ G++A+ + +++DR+ G+L LL +P R
Sbjct: 69 MAWRLESVFGTQDYFTYVATGMLAVFSLFQSMFGAVGVVFDRRIGYLTRLLASPIPRFSI 128
Query: 108 IIGRSIGGALMALIQGTIILALSFTLA-----DLKLSGVVPTLLLAFLVGIAVSGMGMAI 162
+ +G + I+LA+++ L + + +V L+ L+ + +S + +
Sbjct: 129 FASKVLGTLFRITVLSLILLAIAYPLGLHLKPGITIIDLVMAWLVLMLMSLGLSSLFTGM 188
Query: 163 AMRMTSMEGFQIIVTMLMLPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAG 222
A +T E + ++ LP+ F S A +PI MP W++ +A++NP+T+A D RYYL G
Sbjct: 189 AFNITHQEVLFALANLINLPLMFSSSALFPIDLMPNWLKTVAQVNPITHAADLVRYYLVG 248
Query: 223 ---INPTFSLA 230
+P S+A
Sbjct: 249 KPLEDPVMSIA 259
>pir||S74047 hypothetical protein c0111 - Sulfolobus solfataricus
>gi|1707741|emb|CAA69461.1| (Y08256) orf c01011
[Sulfolobus solfataricus]
Length = 192
Score = 111 bits (276), Expect = 7e-24
Identities = 64/186 (34%), Positives = 101/186 (53%), Gaps = 7/186 (3%)
Query: 69 IVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMALIQGTIILA 128
+++ V G++++WDR+ G L +L P R IIG+ + + +L+Q TI+L
Sbjct: 1 MLSFIVLFTSMQSGMSIVWDRRLGVLDRILTTPVPRGNIIIGKVLSAVIRSLVQATIVLV 60
Query: 129 LSFTLADLKLSGVVPTLLLA-----FLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPM 183
++ L + P L FL+ +S + + +A+R TS E I+ +L LP+
Sbjct: 61 VAVLLGMTFAPEINPLDFLGVYAALFLMSFGLSSLFLMLALRATSWESQMAIMNLLNLPL 120
Query: 184 TFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVIF 243
F S AFYP+ +MP W++ +A INPLTY+ AR L GI+ +LAID+ L L A+I
Sbjct: 121 LFTSNAFYPVKSMPYWLKPVAYINPLTYSNGVARGMLLGIST--NLAIDFLYLGLFAIIL 178
Query: 244 VGIAAV 249
I V
Sbjct: 179 STIGIV 184
>pir||S76277 ycf38 protein - Synechocystis sp. (strain PCC 6803)
>gi|1001504|dbj|BAA10129.1| (D64000) Ycf38
[Synechocystis sp.]
Length = 294
Score = 109 bits (269), Expect = 4e-23
Identities = 67/208 (32%), Positives = 112/208 (53%), Gaps = 10/208 (4%)
Query: 20 RSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGG-VDYMTYLVPGIVAMTVFNMG 78
R ++ ++ P +WL+ FG + A + +FG ++Y +L PGI+ T F+
Sbjct: 47 RRPTTLVAGIIQPFMWLVLFGALFLNA-----PQGLFGNDLNYAQFLAPGIIVFTAFSGA 101
Query: 79 FMQGITLIWDRQFGFLKELLVAP-ASRVEAIIGRSIGGALMALIQGTIILALSFTL-ADL 136
G+ +++DR+FGFL LLVAP ASR + ++ ++LIQ +I+ S L A L
Sbjct: 102 LNAGLPVMFDREFGFLNRLLVAPLASRYSIVAASTVYIISLSLIQAAVIVGASALLGAGL 161
Query: 137 KLS-GVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFLSGAFYPIST 195
S G+ L+ FL+ + V+ + + +A + ++ + LP+ F S A P+
Sbjct: 162 PNSFGLGMIALIVFLIVLGVTALSLGLAFALPGHIELIAVIFVTNLPLLFASTALAPLDF 221
Query: 196 MPKWMQYLAKINPLTYAVDGARY-YLAG 222
M W+Q +A +NPLTYA++ RY YL G
Sbjct: 222 MAHWLQVVASLNPLTYAIEPIRYIYLNG 249
>pir||A83294 probable permease of ABC-2 transporter PA2811 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9948895|gb|AAG06199.1|AE004708_5 (AE004708) probable
permease of ABC-2 transporter [Pseudomonas aeruginosa]
Length = 259
Score = 107 bits (264), Expect = 2e-22
Identities = 72/243 (29%), Positives = 130/243 (52%), Gaps = 12/243 (4%)
Query: 7 LMTMVYRELKRFIRSRAR-VLGSLLNPLIWLIFFGKGWAGAFNFPGAKM-IFGGVDYMTY 64
L T+VYRE++RF R + +L + +++ + FG N G ++ GG YM Y
Sbjct: 12 LNTIVYREVRRFTRIWPQTLLPPAITMVLYFVIFG-------NLIGRQIGDMGGFTYMEY 64
Query: 65 LVPGIVAMTVFNMGFMQGITLIWDRQFG-FLKELLVAPASRVEAIIGRSIGGALMALIQG 123
+VPG++ M+V + ++ + +F ++ELLV+P S ++G +IGG L L G
Sbjct: 65 IVPGLIMMSVITNAYGNVVSSFFGSKFQRSVEELLVSPVSPHTILLGYTIGGVLRGLAVG 124
Query: 124 TIILALSFTLADLKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPM 183
I+ LS L++ + T+L+ L S G A+ + + II T ++ P+
Sbjct: 125 VIVTMLSLFFTKLQVHHLGITVLVVVLTATIFSLGGFINAVFARNFDDISIIPTFVLTPL 184
Query: 184 TFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINP-TFSLAIDWGVLSLLAVI 242
T+L G FY I+ +P + Q ++ NP+ + V+ RY + G++ +AI + +L+ AV+
Sbjct: 185 TYLGGVFYSINLLPPFWQTVSLANPILHMVNAFRYGILGVSDIRIGVAIGFMLLA-TAVL 243
Query: 243 FVG 245
++G
Sbjct: 244 YLG 246
>pir||G82303 probable permease VC0590 [imported] - Vibrio cholerae (group O1
strain N16961) >gi|9655021|gb|AAF93757.1| (AE004144)
permease, putative [Vibrio cholerae]
Length = 256
Score = 103 bits (254), Expect = 3e-21
Identities = 66/244 (27%), Positives = 121/244 (49%), Gaps = 17/244 (6%)
Query: 9 TMVYRELKRFIRSRARVL-GSLLNPLIWLIFFGKGWAGAFNFPGAKM-IFGGVDYMTYLV 66
+++ +E+ RF R + L + ++ I FG N G+++ G YM Y+V
Sbjct: 11 SLLGKEINRFTRIWVQTLVPPAITMTLYFIIFG-------NLIGSRIGQMNGFSYMEYIV 63
Query: 67 PGIVAMTVFNMGFMQGITLIWDRQFGF-LKELLVAPASRVEAIIGRSIGGALMALIQGTI 125
PG++ M+V + + + +F ++ELLVAP I G +GG L+ G +
Sbjct: 64 PGLIMMSVITNSYSNVASSFFSSKFQKNIEELLVAPVPNYVIIAGYVMGGVARGLLVGAM 123
Query: 126 ILALSFTLADLKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTF 185
+ A+S DL++ + FL + S G+ A+ + + I+ T ++ P+T+
Sbjct: 124 VTAVSLLFVDLQVDHWGIIIATVFLTSVVFSLGGLINAVFAKTFDDISIVPTFVLTPLTY 183
Query: 186 LSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVIFVG 245
L G FY IS +P++ Q ++KINP+ Y V+ RY G++ D +++ AV+
Sbjct: 184 LGGVFYSISLLPEFWQSVSKINPIVYMVNAFRYGFLGVS-------DVDIMTSFAVLMAF 236
Query: 246 IAAV 249
+ A+
Sbjct: 237 VVAL 240
>pir||A69065 conserved hypothetical protein MTH1486 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622602|gb|AAB85961.1| (AE000909) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 383
Score = 101 bits (248), Expect = 1e-20
Identities = 61/201 (30%), Positives = 106/201 (52%), Gaps = 2/201 (0%)
Query: 55 IFGGVDYMTYLVPGIVAMTV-FNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSI 113
I+G V YM +LVP I+AMT+ F+ F G ++ +R+ G L L + P S + G+ I
Sbjct: 181 IYGDVKYMDFLVPAILAMTIMFSCMFGMGQSIAGERERGELARLFMTPTSVATVVGGKII 240
Query: 114 GGALMALIQGTIILALSFTLADLKLSG-VVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGF 172
++ + ++L ++ L +K++G ++ T+LL L + G G+ I+ R+ + E +
Sbjct: 241 SKLVIESGRALLLLFIAILLFGIKINGSMLLTVLLLILTALCFVGFGIMISARVGTQEDY 300
Query: 173 QIIVTMLMLPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAID 232
+V +PM F+SG FYPI TMP Q +A + PLTYA + R + + ++
Sbjct: 301 MQMVMPFAMPMMFVSGVFYPIETMPWIFQKIAYVVPLTYANNALRAVMLKGAGAGDIMVN 360
Query: 233 WGVLSLLAVIFVGIAAVEFRK 253
VL ++F + F +
Sbjct: 361 LLVLGGFTLLFFAMGVTRFNR 381
>gi|11467311 ycf38 [Cyanophora paradoxa] >gi|1351764|sp|P48278|YC38_CYAPA
HYPOTHETICAL 33.3 KD PROTEIN YCF38
>gi|7484251|pir||T06856 hypothetical protein ycf38 -
Cyanophora paradoxa cyanelle >gi|1016112|gb|AAA81199.1|
(U30821) ycf38 gene product [Cyanophora paradoxa]
Length = 290
Score = 97.5 bits (239), Expect = 1e-19
Identities = 69/265 (26%), Positives = 129/265 (48%), Gaps = 20/265 (7%)
Query: 1 MKSMRVLMTMVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGA-FNFPGAKMIFGGV 59
++ + VL+ ++ +LKR ++ +L PL+WLI FG + A F +
Sbjct: 27 IQELFVLVKRLFIQLKR---RPITLISGILQPLLWLILFGALFQKAPFRISNLEN----- 78
Query: 60 DYMTYLVPGIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPA-SRVEAIIGRSIGGALM 118
+Y+ + PGI+ T F + LI+DR+FGFL LLVAP SR + + +++
Sbjct: 79 NYLQFFYPGILVFTAFAGSLNSSLPLIFDREFGFLNRLLVAPLNSRFSILFSSAFFISVL 138
Query: 119 ALIQGTIILALSFTLADL--KLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIV 176
+ IQ I+ L ++ + FL+ I ++ + +A+ + + ++
Sbjct: 139 SFIQVFFIMLFGVFLGIQLPPFKSLIVSFFFLFLLIIGITTFSILLALLLPTHIELIAVI 198
Query: 177 TMLMLPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFS-------- 228
+L LP+ F S A P+ MP W+Q ++ +NPLTY ++ R+ + + FS
Sbjct: 199 FVLNLPLLFSSTALAPLDFMPSWLQIISCLNPLTYTIEPIRFLYSHSSWLFSSSLFELSF 258
Query: 229 LAIDWGVLSLLAVIFVGIAAVEFRK 253
+I+ G ++ +IF + + F+K
Sbjct: 259 FSINIGQSLIILIIFDLVGFLLFKK 283
>gb|AAC44358.1| (U43537) membrane protein involved in mithramycin resistance
[Streptomyces argillaceus]
Length = 233
Score = 96.3 bits (236), Expect = 3e-19
Identities = 69/231 (29%), Positives = 113/231 (48%), Gaps = 15/231 (6%)
Query: 20 RSRARVLGSLLNPLIWLIFFGKGWAGAF--NFPGAKMIFGGVDYMTYLVPGIVAMTVFNM 77
+ R +L L+ P +++ FG + P A ++ +PG++
Sbjct: 3 QKRMGLLIGLVQPFVYMALFGPLLVKMLPEDGPAAWQVY---------IPGLLVQLGLFA 53
Query: 78 GFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMALIQGTII--LALSFTLAD 135
++ LI D + G+L+ L V PASR+ ++GR + L IQ +I +AL F L
Sbjct: 54 TALRRFGLIPDVRSGYLERLRVTPASRLGLLLGRVLWDVLALFIQSVVIVLIALLFGLR- 112
Query: 136 LKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFLSGAFYPIST 195
GVV + L LVGI+++ + A+AM++TS F ++ + LP+ LSG P++
Sbjct: 113 APFGGVVAAIALMMLVGISLAFLSYALAMKLTSEWLFAPVLNAIALPLMLLSGILLPLTY 172
Query: 196 MPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWG-VLSLLAVIFVG 245
P W+Q + NPL YAVD R + G + + + VL L+ V VG
Sbjct: 173 APGWLQAIGDANPLRYAVDAMRDFFTGDYTSHHVVVGVAVVLGLMVVSAVG 223
>sp|P36880|YADH_ECOLI HYPOTHETICAL 28.5 KD PROTEIN IN HPT-PAND INTERGENIC REGION
>gi|7445883|pir||H64735 probable ABC-2-type transport
protein yadH - Escherichia coli
>gi|1786320|gb|AAC73239.1| (AE000122) orf, hypothetical
protein [Escherichia coli K12]
Length = 256
Score = 93.6 bits (229), Expect = 2e-18
Identities = 63/234 (26%), Positives = 111/234 (46%), Gaps = 11/234 (4%)
Query: 13 RELKRFIRSRARVL-GSLLNPLIWLIFFGKGWAGAFNFPGAKM-IFGGVDYMTYLVPGIV 70
+E+ RF+R + L ++ ++ I FG N G+++ G YM ++VPG++
Sbjct: 15 KEIHRFMRIWVQTLVPPVITMTLYFIIFG-------NLIGSRIGDMHGFSYMQFIVPGLI 67
Query: 71 AMTVFNMGFMQGITLIWDRQFGF-LKELLVAPASRVEAIIGRSIGGALMALIQGTIILAL 129
M+V + + + +F ++ELLVAP I G GG L G ++ A+
Sbjct: 68 MMSVITNAYANVASSFFGAKFQRNIEELLVAPVPTHVIIAGYVGGGVARGLFVGILVTAI 127
Query: 130 SFTLADLKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFLSGA 189
S ++ V L L + S G+ + + + ++ T ++ P+T+L G
Sbjct: 128 SLFFVPFQVHSWVFVALTLVLTAVLFSLAGLLNGVFAKTFDDISLVPTFVLTPLTYLGGV 187
Query: 190 FYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVIF 243
FY ++ +P + Q L+ +NP+ Y + G RY GIN L +GVL + V F
Sbjct: 188 FYSLTLLPPFWQGLSHLNPIVYMISGFRYGFLGINDV-PLVTTFGVLVVFIVAF 240
>pir||F82707 conserved hypothetical protein XF1222 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9106198|gb|AAF84032.1|AE003956_2 (AE003956)
conserved hypothetical protein [Xylella fastidiosa]
Length = 259
Score = 90.5 bits (221), Expect = 2e-17
Identities = 65/251 (25%), Positives = 117/251 (45%), Gaps = 14/251 (5%)
Query: 2 KSMRVLMTMVYRELKRFIRSRARVL-GSLLNPLIWLIFFGKGWAGAFNFPGAKM-IFGGV 59
+++ L T+V RE++R +R ++ L + ++ + FGK G ++ G
Sbjct: 10 RNLTALSTIVRREVRRILRIWSQTLVPPAITMGLYFLIFGK-------LIGTRVGQMDGF 62
Query: 60 DYMTYLVPGIVAMTVFNMGFMQGITLIWDRQFG-FLKELLVAPASRVEAIIGRSIGGALM 118
DYM ++VPG+V M+V + + + +FG ++ELLV+P + G G L
Sbjct: 63 DYMHFIVPGLVMMSVIQNSYGNISSSFFGAKFGRHVEELLVSPMPNWVILWGYVAGAVLR 122
Query: 119 ALIQGTIILALSFTLADLKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTM 178
++ G I++ ++ ++L + T A L I S G A + II T
Sbjct: 123 GVMVGAIVMVIAMYFTPVRLPYPLVTSSTAVLGAIIFSLAGFINATYAKKFDDIAIIPTF 182
Query: 179 LMLPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSL 238
++ P+++L G FY + +P W + NP+ Y V+ RY L G S W +L
Sbjct: 183 VLTPLSYLGGVFYSVKLLPGWAEAATYANPIFYMVNAFRYGLLG----HSDVPLWKAYAL 238
Query: 239 LAVIFVGIAAV 249
+ G++A+
Sbjct: 239 MLTFIAGLSAL 249
>emb|CAC11371.1| (AL445063) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 254
Score = 85.4 bits (208), Expect = 6e-16
Identities = 60/213 (28%), Positives = 108/213 (50%), Gaps = 15/213 (7%)
Query: 54 MIFGG--VDYMTYLVPGIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIG- 110
+IF G + Y +L PG+VAM F G + G L DR++G ++LLV P R++ ++G
Sbjct: 47 VIFDGRSISYAQFLSPGVVAMQPFIAGSIGGSMLWSDRRWGMFEQLLVGPFHRIDYLLGI 106
Query: 111 ------RSIGGALMALIQGTIILALSFTLADLKLSGVVPTLLLAFLVGIAVSGMGMAIAM 164
S+GGAL+ + ++ L +V +++ + I + + + +++
Sbjct: 107 IYVSMIFSVGGALLMFLVSYLLTGFVVHY----LMNIVLIVIVLLVSSILFTSLFLVLSV 162
Query: 165 RMTSMEGFQIIVTMLMLPMTFLSGAFYPIS-TMPKWMQYLAKINPLTYAVDGARYYLAGI 223
+ +++ + + + + F S AFYPI+ P ++ ++ NPLTY VD R +
Sbjct: 163 FIRTIQTYNTVTMFIFFILDFASSAFYPINGRTPLGLRIVSYANPLTYIVDSVRDMMFA- 221
Query: 224 NPTFSLAIDWGVLSLLAVIFVGIAAVEFRKATI 256
T S I G++ L+ IF AA+ +RKA I
Sbjct: 222 RLTGSDLIYVGIVVALSAIFFVFAALSYRKAKI 254
>sp|P75774|YBHR_ECOLI HYPOTHETICAL 41.6 KDA PROTEIN IN MOAE-RHLE INTERGENIC REGION
>gi|7467082|pir||H64815 ybhR protein - Escherichia coli
>gi|1787010|gb|AAC73879.1| (AE000181) orf, hypothetical
protein [Escherichia coli K12]
Length = 368
Score = 85.0 bits (207), Expect = 8e-16
Identities = 54/187 (28%), Positives = 97/187 (50%), Gaps = 7/187 (3%)
Query: 59 VDYMTYLVPGIVAM-TVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGAL 117
+DY ++VP ++AM T + + +++ +R+ G L +LLV+P + + IG+++ +
Sbjct: 169 LDYKWFVVPSLIAMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQIFIGKAVPALI 228
Query: 118 MALIQGTIILALSFTLADLKLSGVVPTLLLAFLV-GIAVSGMGMAIAMRMTSMEGFQIIV 176
+A Q TI+LA+ + +G + ++ G+++ G G+ I+ ++ + I V
Sbjct: 229 VATFQATIVLAIGIWAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISSLCSTQQQAFIGV 288
Query: 177 TMLMLPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVD-GARYYLAGINPTFSLAIDWGV 235
+ M+P LSG P+ MP W+Q L INP+ + D + YL SL I W
Sbjct: 289 FVFMMPAILLSGYVSPVENMPVWLQNLTWINPIRHFTDITKQIYLKDA----SLDIVWNS 344
Query: 236 LSLLAVI 242
L L VI
Sbjct: 345 LWPLLVI 351
>pir||A75076 membrane protein PAB1704 - Pyrococcus abyssi (strain Orsay)
>gi|5458422|emb|CAB49910.1| (AJ248286) MEMBRANE PROTEIN
[Pyrococcus abyssi]
Length = 264
Score = 84.3 bits (205), Expect = 1e-15
Identities = 58/230 (25%), Positives = 111/230 (48%), Gaps = 14/230 (6%)
Query: 25 VLGSLLNPLIWLIFFGKGWA---GAFNFPGAKMIFGGVDYMTYLVPGIVAMTVFNMGFMQ 81
+LG+L P+I+++ FG G G + + Y+ ++ PG++ + N GF
Sbjct: 28 LLGTLFEPMIYVLLFGPLMGKLIGDLEVNGMR-----ISYLAFMFPGVLTLVSINQGFRG 82
Query: 82 GITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMALIQGTIILALSFTL---ADLKL 138
T I DR +G L+ L P R + + + + A+I ++ L+ + A + L
Sbjct: 83 ATTFIQDRFYGGLETLFTLPVPRTVLFMAKILSACIRAIIAMIVLSILTLIIAKDASITL 142
Query: 139 SGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFLSGAFYP--ISTM 196
+G + +LL+ L+ + +S + + + + I +++LPM FLS FYP +
Sbjct: 143 TGFIGSLLVNSLLVVMLSSFMIYLLSKSQNPNLPLAISGIVILPMMFLSTVFYPETVFES 202
Query: 197 PKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVIFVGI 246
K + L INP+T+A + R ++ G + S + + LL + F+G+
Sbjct: 203 SKVLSILVSINPMTHASNLVRSFIYGTHLQHSTMV-VSLAYLLVLAFIGM 251
>pir||T36506 probable ABC-transport system transmembrane component -
Streptomyces coelicolor >gi|5457260|emb|CAB46948.1|
(AL096822) putative ABC-transporter transmembrane
component [Streptomyces coelicolor A3(2)]
Length = 282
Score = 83.5 bits (203), Expect = 2e-15
Identities = 56/218 (25%), Positives = 99/218 (44%), Gaps = 14/218 (6%)
Query: 29 LLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVDYMTYLVPGIVAMTVFNMGFMQGITLIWD 88
++N L++ FG AG+ DY+ +++PGI+ M+V + G+++ D
Sbjct: 65 IMNLLMFTYLFGGALAGSPR-----------DYIQFVLPGILVMSVVMITMYTGVSVNID 113
Query: 89 RQFGFLKELLVAPASRVEAIIGRSIGGALMALIQGTIILALSFTLA---DLKLSGVVPTL 145
+ G + P R A++G +G AL I ++L++ L D GVV +
Sbjct: 114 IEKGVFDRIRSLPIWRPSAMVGYLLGDALRYTIASVVMLSVGLLLGYRPDGGFVGVVAGI 173
Query: 146 LLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFLSGAFYPISTMPKWMQYLAK 205
L L A S + + + + + + M++ P+TFLS F TMP W+Q
Sbjct: 174 ALLLLFSFAFSWIWTMFGLMLRTEKSVMSVSMMVIFPLTFLSNVFVDPKTMPGWLQAFVN 233
Query: 206 INPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVIF 243
+P+T+ R +AG P +A G +L ++F
Sbjct: 234 NSPITHLASAVRGLMAGDWPGAEIAWTLGWAALFLLVF 271
>emb|CAB94553.1| (AL359152) putative ABC transporter, integral membrane subunit
[Streptomyces coelicolor A3(2)]
Length = 249
Score = 83.1 bits (202), Expect = 3e-15
Identities = 66/252 (26%), Positives = 120/252 (47%), Gaps = 19/252 (7%)
Query: 10 MVY-RELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVDYMTYLVPG 68
+VY R L++ +RSR +L +L PL++L+FFG + P + G LVPG
Sbjct: 8 LVYGRYLRQSLRSRFALLFGVLMPLLYLLFFGPLLT---DLP----LGGRGSSWQVLVPG 60
Query: 69 IVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMALIQGTIILA 128
++ G ++I + G ++ + V P SR+ ++GR + A + Q +++
Sbjct: 61 LLLQLGLFGASFAGFSIIIENGQGVVERMRVTPVSRLALLLGRVLRDATVFAFQAVLLVL 120
Query: 129 LSFTLADLKLSGVVPTLLLAF----LVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMT 184
+ + L +P +L+ F L+ ++++ + A+AM++ + + F + L +P
Sbjct: 121 AALVMG---LRAPLPGVLIGFAFVALLTVSLASLSYALAMKVRTPQEFGPTINALTMPSM 177
Query: 185 FLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLA--VI 242
LSG P++ P W+ L+ + P Y VD R G T + +GVL LA +
Sbjct: 178 LLSGLMLPMTLGPAWLDVLSHLMPFRYLVDAVRDAYVGSYATAHML--YGVLVALAFTAL 235
Query: 243 FVGIAAVEFRKA 254
V + FR A
Sbjct: 236 AVTVGTRVFRTA 247
>pir||B72484 hypothetical protein APE2514 - Aeropyrum pernix (strain K1)
>gi|5106219|dbj|BAA81530.1| (AP000064) 275aa long
hypothetical protein [Aeropyrum pernix]
Length = 275
Score = 82.3 bits (200), Expect = 5e-15
Identities = 67/260 (25%), Positives = 121/260 (45%), Gaps = 11/260 (4%)
Query: 4 MRVLMTMVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGG--VDY 61
+RV + R+ K I ++ SL+ P+IW + + G DY
Sbjct: 7 VRVAKAVALRDFKIRITYIPWIINSLIQPIIWTYILIYTYRAVLGETAQTLQKHGWPADY 66
Query: 62 MTYLVPGIVAMTVFN-MGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMA- 119
+ +L+ G V +++FN + + G+ + +R FG L+ + + PASR+ + G SI G L A
Sbjct: 67 VGFLILGQVLLSLFNALNWRAGMAIQRERWFGTLEIVFLTPASRLVMLTGSSIYGLLDAG 126
Query: 120 --LIQGTIILALSFTLADLKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVT 177
+I+ L+ T ++ + LL + + MG+ +A I
Sbjct: 127 WVSFSAALIVFLA-TGTGFNIADPLAALLSVSMAVVGAVSMGIGLAGLYVLTRSAGPIAI 185
Query: 178 MLMLPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYL---AGINPTFSLAIDWG 234
+ P+ F SG+ +P+S +P +QY+ PLTY ++ AR L A I+ L +
Sbjct: 186 AIQHPLRFFSGSSFPLSILPASLQYIGYALPLTYGIEAARISLLEGAPIDEVSPLILRLA 245
Query: 235 VLSLLAVIFVGIAAVEFRKA 254
++SL+ +I GI V + ++
Sbjct: 246 LISLVGII-AGILFVRWAES 264
>sp|O52619|NODJ_RHIME NODULATION PROTEIN J >gi|2809542|gb|AAB97763.1| (AF043118)
nodulation protein J [Sinorhizobium meliloti]
Length = 262
Score = 79.2 bits (192), Expect = 5e-14
Identities = 62/225 (27%), Positives = 108/225 (47%), Gaps = 15/225 (6%)
Query: 23 ARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFG---GVDYMTYLVPGIVAMTVFNMGF 79
A +LG+L +PLI+L FG G G M+ G GV Y+ +L G+VA +
Sbjct: 33 ASILGNLADPLIYL--FGLG-------AGLGMMVGRVDGVSYIAFLSAGMVATSAMTAST 83
Query: 80 MQGITLIWDRQFG--FLKELLVAPASRVEAIIGRSIGGALMALIQGTIILALSFTLADLK 137
+ I + R + +L + + ++G A A + GT I ++ TL +
Sbjct: 84 FETIYATFARMRAQRTWEAILHTQVTIGDIVLGELAWAATKASLAGTGIGVVAATLGYTE 143
Query: 138 LSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFLSGAFYPISTMP 197
++ L + L G+A + + M + S E F T+++ PM FLSGA +P++ +P
Sbjct: 144 WVSLLYALPVIALTGLAFASLAMIVTALAPSYEYFIFYQTLVITPMLFLSGAVFPVNQLP 203
Query: 198 KWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVI 242
Q++ +I PL +++D R + G +P + + G L AV+
Sbjct: 204 GAFQHVTRILPLAHSIDVIRPIMLG-SPLVHVGLHIGALCCYAVV 247
>sp|P06755|NODJ_RHILV NODULATION PROTEIN J >gi|95240|pir||S10231 nodulation protein nodJ
- Rhizobium leguminosarum plasmid pRL1JI
>gi|46213|emb|CAA68617.1| (Y00548) nodJ [Rhizobium
leguminosarum]
Length = 259
Score = 76.9 bits (186), Expect = 2e-13
Identities = 59/222 (26%), Positives = 105/222 (46%), Gaps = 9/222 (4%)
Query: 23 ARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVDYMTYLVPGIVAMTVFNMGFMQG 82
A +LG+L +P+I+L FG G AG G GV Y +L G++A + +
Sbjct: 30 ASILGNLADPVIYL--FGLG-AGLGVMVGR---VDGVSYTAFLAAGMIATSAMTAATFET 83
Query: 83 ITLIWDRQFG--FLKELLVAPASRVEAIIGRSIGGALMALIQGTIILALSFTLADLKLSG 140
I + R G + +L ++ + ++G A A + GT I ++ L
Sbjct: 84 IYAAFGRMQGQRTWEAMLYTQLTQGDIVVGEMAWAATKASLAGTGIGIVAAMLGYTHWLA 143
Query: 141 VVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFLSGAFYPISTMPKWM 200
++ L + + G+A + +GM + S + F T+++ PM FLSGA +P+ +P
Sbjct: 144 LLYALPVIAITGLAFASLGMVVTALAPSYDYFIFYQTLVITPMLFLSGAVFPVDQLPVAF 203
Query: 201 QYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVI 242
Q +A PL +++D R + G P ++ + GVL + V+
Sbjct: 204 QQIAAFLPLAHSIDLIRPTMLG-QPIANVCLHIGVLCIYIVV 244
>sp|P72336|NODJ_RHIS3 NODULATION PROTEIN J >gi|1531622|gb|AAB16899.1| (U53327) NodJ
[Rhizobium sp. N33]
Length = 262
Score = 76.5 bits (185), Expect = 3e-13
Identities = 61/236 (25%), Positives = 109/236 (45%), Gaps = 15/236 (6%)
Query: 23 ARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVD---YMTYLVPGIVAMTVFNMGF 79
A +LG+L +P+I+L FG G G M+ G V+ Y +L G+VA +
Sbjct: 33 ASILGNLADPMIYL--FGLG-------TGLGMMVGRVEDASYPAFLAAGMVATSAMTAST 83
Query: 80 MQGITLIWDR--QFGFLKELLVAPASRVEAIIGRSIGGALMALIQGTIILALSFTLADLK 137
+ I + R + + +L + + ++G + A + GT I ++
Sbjct: 84 FETIYATFPRMNEQRTWEAILHTQLTLGDIVLGELVWATTRAFLAGTAIAMVAVIAGYSA 143
Query: 138 LSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFLSGAFYPISTMP 197
S V+ L + L G+A + + M + S F T+ + PM FLSGA +P++ +P
Sbjct: 144 WSSVLYVLPVIALTGLAFASLAMIVTALAPSYHYFIFYQTLFLTPMLFLSGAVFPVTQLP 203
Query: 198 KWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVIFVGIAAVEFRK 253
Q++A I PL +++D R + P +A+ G L + AV+ ++ V R+
Sbjct: 204 STFQHIAGILPLAHSIDLIRPGMLD-RPAGDIALHIGALCIYAVVPFFLSMVLLRR 258
>pir||B71197 hypothetical protein PH1848 - Pyrococcus horikoshii
>gi|3258286|dbj|BAA30969.1| (AP000007) 255aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 255
Score = 76.5 bits (185), Expect = 3e-13
Identities = 65/247 (26%), Positives = 121/247 (48%), Gaps = 15/247 (6%)
Query: 18 FIRSRARVLGSLLNPLIWL---IFFGKGWAGAFNFPGAKMIFGGV-DYMTYLVPGIVAMT 73
F R RV+ S+L L++L ++FG+ G F G G+ DY TY++ G V
Sbjct: 2 FFRYPLRVISSVLVGLVFLLQFVYFGQAILGG-RFSGLLKNATGIGDYPTYVLIGYVLWW 60
Query: 74 VFNMGFMQGITLIW-DRQFGFLKELLVAPASRVEAIIGRSIGGALMALIQGTIILALSFT 132
+ + + + Q G + +++P ++ +IG ++ +M I I+ L
Sbjct: 61 ISASPMEASVWGVRRELQRGTFESNVISPTGILKMVIGLAVSWMMMDSIIMLIVFGLGVI 120
Query: 133 LADLKLS-----GVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFLS 187
+ ++K+S V+P LLLAF + G G+ A + ++ + T+ L + FLS
Sbjct: 121 IFNIKISVIYVIKVIPILLLAFATFL---GFGIVFAGLVVMLKNIGPLATVFELIILFLS 177
Query: 188 GAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVIFVGIA 247
G F+P+ST+P +++ ++ I PLT+A R G + + S+ + + +L I+ I+
Sbjct: 178 GVFFPLSTLPDFIRKISWIIPLTHAASAVRKLFLGFSYS-SIISELNAMLILLPIYWMIS 236
Query: 248 AVEFRKA 254
F+ A
Sbjct: 237 LGVFKWA 243
>pir||B24400 nodulation protein nodJ - Rhizobium leguminosarum plasmid pRL1JI
>gi|225123|prf||1209215B gene nodJ [Rhizobium
leguminosarum]
Length = 259
Score = 75.7 bits (183), Expect = 5e-13
Identities = 59/222 (26%), Positives = 104/222 (46%), Gaps = 9/222 (4%)
Query: 23 ARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVDYMTYLVPGIVAMTVFNMGFMQG 82
A +LG+L +P+I+L FG G AG G GV Y +L G++A + +
Sbjct: 30 ASILGNLADPVIYL--FGLG-AGLGVMVGR---VDGVSYTAFLAAGMIATSAMTAATFET 83
Query: 83 ITLIWDRQFG--FLKELLVAPASRVEAIIGRSIGGALMALIQGTIILALSFTLADLKLSG 140
I + R G + +L + + ++G A A + GT I ++ L
Sbjct: 84 IYAAFGRMQGQRTWEAMLYTQLTLGDIVVGEMAWAATKASLAGTGIGIVAAMLGYTHWLA 143
Query: 141 VVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFLSGAFYPISTMPKWM 200
++ L + + G+A + +GM + S + F T+++ PM FLSGA +P+ +P
Sbjct: 144 LLYALPVIAITGLAFASLGMVVTALAPSYDYFIFYQTLVITPMLFLSGAVFPVDQLPVAF 203
Query: 201 QYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVI 242
Q +A PL +++D R + G P ++ + GVL + V+
Sbjct: 204 QQIAAFLPLAHSIDLIRPTMLG-QPIANVCLHIGVLCIYIVV 244
>sp|P32011|DRRB_STRPE DAUNORUBICIN RESISTANCE TRANSMEMBRANE PROTEIN
>gi|322313|pir||S27708 daunorubicin resistance protein -
Streptomyces peucetius >gi|153231|gb|AAA74718.1|
(M73758) daunorubicin resistance protein [Streptomyces
peucetius]
Length = 283
Score = 74.5 bits (180), Expect = 1e-12
Identities = 57/248 (22%), Positives = 107/248 (42%), Gaps = 10/248 (4%)
Query: 8 MTMVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVDYMTYLVP 67
+T ++R + F +++ +L PLI+L+ F + GAF +Y+ + +P
Sbjct: 38 LTHLWRAMMAFKHFPVQLIDIVLMPLIFLLMFTYLFGGAF-------ADSTEEYLQFYLP 90
Query: 68 GIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMALIQGTIIL 127
G+ V M G +L D G P + + G +G L ++ +
Sbjct: 91 GVTVQAVVMMTVYTGTSLNTDIHKGVFDRFRTLPFWQPATLAGSLLGDVLRYVVALATTV 150
Query: 128 ALSFTL---ADLKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMT 184
+L L AD GVV +L+ + G +VS + A+ + + E +++ P+
Sbjct: 151 SLGLLLGFRADGGFLGVVGAMLVLIVFGFSVSWIFAALGVVASEPERVSGTSMIVLYPLL 210
Query: 185 FLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVIFV 244
F+S F TMP WMQ + NP+++A +R + G + + + V + L +F
Sbjct: 211 FMSNIFVMPETMPGWMQAIVDANPMSHAATASRELMHGTAGFWDVGLVLCVSAGLVAVFA 270
Query: 245 GIAAVEFR 252
+ +R
Sbjct: 271 PLTMRLYR 278
>dbj|BAA35451.1| (D90716) Hypothetical 41.1 kd protein in rhsB-pit intergenic
region. [Escherichia coli]
Length = 187
Score = 74.5 bits (180), Expect = 1e-12
Identities = 48/173 (27%), Positives = 87/173 (49%), Gaps = 6/173 (3%)
Query: 72 MTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMALIQGTIILALSF 131
+T + + +++ +R+ G L +LLV+P + + IG+++ ++A Q TI+LA+
Sbjct: 2 ITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQIFIGKAVPALIVATFQATIVLAIGI 61
Query: 132 TLADLKLSGVVPTLLLAFLV-GIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFLSGAF 190
+ +G + ++ G+++ G G+ I+ ++ + I V + M+P LSG
Sbjct: 62 WAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISSLCSTQQQAFIGVFVFMMPAILLSGYV 121
Query: 191 YPISTMPKWMQYLAKINPLTYAVD-GARYYLAGINPTFSLAIDWGVLSLLAVI 242
P+ MP W+Q L INP+ + D + YL SL I W L L VI
Sbjct: 122 SPVENMPVWLQNLTWINPIRHFTDITKQIYLKDA----SLDIVWNSLWPLLVI 170
>sp|P24144|NODJ_RHILT NODULATION PROTEIN J >gi|78055|pir||S08617 nodulation protein nodJ
- Rhizobium leguminosarum bv. trifolii
>gi|46244|emb|CAA35772.1| (X51411) nodJ protein (AA
1-262) [Rhizobium leguminosarum]
Length = 262
Score = 73.7 bits (178), Expect = 2e-12
Identities = 61/222 (27%), Positives = 101/222 (45%), Gaps = 9/222 (4%)
Query: 23 ARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVDYMTYLVPGIVAMTVFNMGFMQG 82
A +LG L PLI+L FG G AG G GGV Y +L G+VA + +
Sbjct: 33 ASLLGHLAEPLIYL--FGLG-AGLGVMVGR---VGGVSYTAFLAAGMVATSAMTAATFET 86
Query: 83 ITLIWDRQFG--FLKELLVAPASRVEAIIGRSIGGALMALIQGTIILALSFTLADLKLSG 140
I + R G + +L + ++G A A + G I ++ L +
Sbjct: 87 IYAAFGRMEGQRTWEAMLYTQLRLGDIVLGEMAWAATKAALAGAGIGVVAAALGYTQWLS 146
Query: 141 VVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFLSGAFYPISTMPKWM 200
++ L + L G+A + +GM + S + F T+++ P+ FLSGA +P+ +P
Sbjct: 147 LLYALPVIALTGLAFASLGMVVTALAPSYDYFIFYQTLVITPILFLSGAVFPVDQLPIVF 206
Query: 201 QYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVI 242
Q A+ PL++++D R + G +P + G L + VI
Sbjct: 207 QTAARFLPLSHSIDLIRPIMLG-HPVVDVCQHVGALCIYIVI 247
>sp|P50333|NODJ_RHIGA NODULATION PROTEIN J >gi|1403527|emb|CAA60882.1| (X87578) nodJ
[Rhizobium galegae]
Length = 262
Score = 73.4 bits (177), Expect = 3e-12
Identities = 57/234 (24%), Positives = 105/234 (44%), Gaps = 11/234 (4%)
Query: 23 ARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVDYMTYLVPGIVAMTVFNMGFMQG 82
A +LG+L +P+I++ G G GGV Y +L G+VA + +
Sbjct: 33 ASLLGNLADPMIYIFGLGSGLGVMLGN------VGGVSYSAFLAAGMVATSAMTASTFET 86
Query: 83 I--TLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMALIQGTIILALSFTLADLKLSG 140
I T R + +L + + ++G A A + GT I ++ TLA +
Sbjct: 87 IYATFARMRDHRTWEAMLYTKLTLGDIVLGEMAWAATKASLAGTAIGIVTATLAYSEWDS 146
Query: 141 VVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFLSGAFYPISTMPKWM 200
++ + L G+A + + M +A S + ++++ PM LSG+ +P+ + +
Sbjct: 147 LIYVFPVIALTGLAFASLSMVVAALAPSYDYLVFYQSLVITPMLVLSGSVFPVEQLSPML 206
Query: 201 QYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVI--FVGIAAVEFR 252
Q + + PL +++D R + G +P + + G L L V+ FV IA + R
Sbjct: 207 QRITHLLPLAHSIDLIRPAMLG-HPVPDITLHLGALCLYIVLPFFVSIALLRRR 259
>emb|CAC08413.1| (AL392178) putative ABC transport system integral membrane protein
[Streptomyces coelicolor]
Length = 262
Score = 72.2 bits (174), Expect = 6e-12
Identities = 65/251 (25%), Positives = 117/251 (45%), Gaps = 15/251 (5%)
Query: 3 SMRVLMTMVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGG--VD 60
++R TM+ R L R + L LL P++ L+ F + A + A + GG D
Sbjct: 7 AVRDSSTMLRRNLLHARRYPSLTLNLLLTPVMLLLLFVYVFGDAMS---AGIGGGGDRSD 63
Query: 61 YMTYLVPGIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMAL 120
Y++YLVPG++ MT+ + +++ D G + R ++G IG + ++
Sbjct: 64 YVSYLVPGLLLMTIGSTTIGTAVSVSNDMTEGIIARFRTMAIHRGSVLVGHVIGSVVQSI 123
Query: 121 IQ----GTIILALSFTLADLKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQI-I 175
+ G + +A+ F D + L L +A++ + + + + + E
Sbjct: 124 MSVVLVGAVGVAIGFRSTDATALEWLAAFGLLLLFTLALTWIAVGMGLISPNAEAASNNA 183
Query: 176 VTMLMLPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYL--AGINPTFSLAIDW 233
+ ++ LP+ +S AF PI +MP W Q +A+ P T A++ R L GI LA+ W
Sbjct: 184 LPLIFLPL--ISSAFVPIDSMPGWFQPIAEYQPFTPAIETLRGLLLGTGIGHNGWLALGW 241
Query: 234 GVLSLLAVIFV 244
L+L A+ +V
Sbjct: 242 -CLALTALGYV 251
>pir||T50567 probable ABC-type transport protein, transmembrane component
[imported] - Streptomyces coelicolor
>gi|6469243|emb|CAB61704.1| (AL133220) probable
ABC-transporter, transmembrane component. [Streptomyces
coelicolor A3(2)]
Length = 274
Score = 71.4 bits (172), Expect = 1e-11
Identities = 55/252 (21%), Positives = 111/252 (43%), Gaps = 7/252 (2%)
Query: 4 MRVLMTMVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVDYMT 63
+R ++ R L + + ++L P+++ + F + G+ G + G Y+
Sbjct: 24 LRHTSALIRRNLLWIRQDPESMFDAILFPIVFTLLFVYVFGGSI---GQSLGGGQQAYVQ 80
Query: 64 YLVPGIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMALIQG 123
Y++PG++AM NM G D G + P R + + I L+ ++
Sbjct: 81 YVIPGLMAMMGMNMAQGVGTGFNQDFNSGVMDRFRSLPIGRGSVLFAK-IAVELLRMLFA 139
Query: 124 TIILALSFTLADLKLS---GVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLM 180
T +L + L ++ G++ ++ L+ + G A+ + + + + M + + Q + +++
Sbjct: 140 TAVLMVVAVLVGFDITDWAGLLASVGLSAVFGSALMWVFLTLGVVMKNAQSVQAMGFLVL 199
Query: 181 LPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLA 240
+P+ F S F P +MP W+Q NPL+ D AR + G L + + L
Sbjct: 200 MPLQFGSSIFAPTDSMPGWLQSFTDYNPLSSLADTARGLMLGGPVAHDLWVTLAWSAALT 259
Query: 241 VIFVGIAAVEFR 252
+ IA +FR
Sbjct: 260 AVMAPIAIHKFR 271
>pir||S32909 hypothetical protein 5 - Streptomyces antibioticus
>gi|153383|gb|AAA26794.1| (L06249) membrane protein
[Streptomyces antibioticus]
Length = 273
Score = 70.6 bits (170), Expect = 2e-11
Identities = 59/249 (23%), Positives = 113/249 (44%), Gaps = 13/249 (5%)
Query: 10 MVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVD-YMTYLVPG 68
++ R L + + ++L P+++ + F + G+ K + GG + Y+ Y+VPG
Sbjct: 29 LIRRNLLWIRQDPESMFDAILFPVVFTLLFVYVFGGSIG----KSLGGGQEQYVQYVVPG 84
Query: 69 IVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMALIQGTIILA 128
++AM NM G D G + P R + + I LM ++ T +L
Sbjct: 85 LLAMMGMNMAQGVGTGFNQDFNSGVMDRFRSLPIGRGSVLFAK-IAVELMRMLFATAVLL 143
Query: 129 LSFTLADLK---LSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTF 185
+ L + L ++ ++ L+ L G A+ + + + + M + + Q + ++++P+ F
Sbjct: 144 VVALLVGYEVGMLERLLGSVALSALFGSALMWVFLTLGVVMKNAQSVQAMGFLVLMPLQF 203
Query: 186 LSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAG--INPTFSLAIDWGVLSLLAVIF 243
S F P +MP W+Q NPL+ D AR + G + + + W V L V+
Sbjct: 204 GSSIFAPTQSMPGWLQAFTDYNPLSALADCARGLMEGGPVAHALWVTVIWSV--GLTVVM 261
Query: 244 VGIAAVEFR 252
+A +FR
Sbjct: 262 APVAIHKFR 270
>pir||F70984 probable drrC protein - Mycobacterium tuberculosis (strain H37RV)
>gi|1841454|emb|CAB06097.1| (Z83857) drrC [Mycobacterium
tuberculosis]
Length = 276
Score = 70.2 bits (169), Expect = 2e-11
Identities = 61/259 (23%), Positives = 115/259 (43%), Gaps = 36/259 (13%)
Query: 13 RELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVDYMTY-------L 65
R L R+ R V+G+++ P+++++ ++ G + Y+ +
Sbjct: 36 RLLTRWARDYITVIGAIVLPILFMVVLN-------------IVLGNLAYVVTHDSGLYSI 82
Query: 66 VPGIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMALIQGTI 125
VP I I L+ +R FG L L V P R +I R + A+ L+ +
Sbjct: 83 VPLIALGAAITGSTFVAIDLMRERSFGLLARLWVLPVHRASGLISRILANAIRTLVTTLV 142
Query: 126 ILALSFTLADLKLSGVVPTLL---LAFLVGIAVSGMGMAIAM---RMTSMEGFQIIVTML 179
+L L G++P+L+ + ++GIA++ M +A+ + +EG +++ +
Sbjct: 143 MLGTGVVLGFRFRQGLIPSLMWISVPVILGIAIAAMVTTVALYTAQTVVVEGVELVQAIA 202
Query: 180 MLPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLL 239
+ F S P+++ P W+Q P++YA+ R + G P S I G+L
Sbjct: 203 I----FFSTGLVPLNSYPGWIQPFVAHQPVSYAIAAMRGFAMG-GPVLSPMI--GMLVWT 255
Query: 240 AVIFVGIA---AVEFRKAT 255
A I V A A+ +R+A+
Sbjct: 256 AGICVVCAVPLAIGYRRAS 274
>pir||E70501 probable transmembrane protein - Mycobacterium tuberculosis
(strain H37RV) >gi|2326729|emb|CAB10943.1| (Z98268)
hypothetical protein Rv1686c [Mycobacterium
tuberculosis]
Length = 226
Score = 69.5 bits (167), Expect = 4e-11
Identities = 46/184 (25%), Positives = 88/184 (47%), Gaps = 3/184 (1%)
Query: 74 VFNMGFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMALIQGTIILALSFTL 133
+F M + IT+ +R G L+ +L P R++ + G ++ A Q T+ ++F
Sbjct: 43 LFVMFVITAITMQRERASGTLERILTTPLRRLDLLAGYGTAFSIAAAAQATLACIVAFWF 102
Query: 134 ADLKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQII--VTMLMLPMTFLSGAFY 191
+G P + A + AV G+G+ + + FQ + + ++M+P L+G
Sbjct: 103 LGFDTAGS-PVWVFAIAIVNAVLGVGLGLLCSAFARTEFQAVQFIPLVMVPQLLLAGIIV 161
Query: 192 PISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVIFVGIAAVEF 251
P + MP W+++++ + P +YA++ + A T D V+ AV + +AAV
Sbjct: 162 PRALMPTWLEWISNVMPASYALEALQQVGAHPELTGIAVRDVVVVLSFAVASLCLAAVTL 221
Query: 252 RKAT 255
R+ T
Sbjct: 222 RRRT 225
>emb|CAA75762.1| (Y15759) ORF2 [Streptomyces rochei]
Length = 284
Score = 69.5 bits (167), Expect = 4e-11
Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 6/199 (3%)
Query: 49 FPGAKMIFGGVD-YMTYLVPGIVAMTVFNMGFMQGITLIWDRQFGFLKELLVAPASRVEA 107
F GA + G VD Y+ +L+PGI+ M+V + G+ + D G P R
Sbjct: 77 FGGA--LAGSVDAYIQFLLPGILVMSVVMITMYTGVAINTDIDKGVFDRFRTLPIWRPAP 134
Query: 108 IIGRSIGGALMALIQGTIILALSFTLADLKLSGVVPTLL---LAFLVGIAVSGMGMAIAM 164
++G +G + I ++L + + G LL L L + S + +
Sbjct: 135 MVGYLLGDVVRYFIASVVMLTVGVVIGYRPGGGATGILLGIALLMLFSFSFSWIWTMFGL 194
Query: 165 RMTSMEGFQIIVTMLMLPMTFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGIN 224
+ + + + M++ P+TFLS F TMP W+Q +P+T+ R +AG
Sbjct: 195 MLRTEKSVMGVSMMVIFPLTFLSNVFVDPRTMPGWLQAFVNNSPVTHLATAVRELMAGNW 254
Query: 225 PTFSLAIDWGVLSLLAVIF 243
P +A G + ++F
Sbjct: 255 PAADIAWSLGWSAAFVLVF 273
>pir||B72270 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981863|gb|AAD36378.1|AE001785_9 (AE001785)
conserved hypothetical protein [Thermotoga maritima]
Length = 271
Score = 69.5 bits (167), Expect = 4e-11
Identities = 55/231 (23%), Positives = 105/231 (44%), Gaps = 21/231 (9%)
Query: 32 PLIWLIFFGKGWAGAFNFPGA---KMIFGGVDYMTYLVPGIVAMTVFNMGFMQGITLIWD 88
P++ L +FG F GA K I G YL+ G + + L +
Sbjct: 38 PVVLLYYFGTESGLVRFFYGATNTKNIIG------YLLLGAAYWNYVEVLWGSVFALRYY 91
Query: 89 RQFGFLKELLVAPASRVEAIIGRSIGGALMALIQGTIILALS-------FTLADLKLSGV 141
+ G L+EL + P S + I+ S+ G + ++ I+ L+ F L + L+
Sbjct: 92 MRIGQLEELFIMPVSSIGYILSWSVFGLVKVTVESVPIIVLAVLLNLMTFNLVEFALAAG 151
Query: 142 VPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFLSGAFYPISTMPKWMQ 201
V L + G+ G+ + + EG ++ V++L + G F+P++ +PK ++
Sbjct: 152 VVILSIIASFGLVFLFFGITLRFK----EGDEL-VSLLGNAAPLIGGMFFPVNVLPKVLE 206
Query: 202 YLAKINPLTYAVDGARYYLAGINPTFSLAIDWGVLSLLAVIFVGIAAVEFR 252
YLA P T+ +D RY+L N L ++ +L +L+++++ + F+
Sbjct: 207 YLAYAFPFTWGLDLTRYFLMKTNTLLDLKKEFIILIVLSLLYLAFGTISFK 257
>pir||T36343 probable ABC-type transport system transmembrane protein -
Streptomyces coelicolor >gi|4808356|emb|CAB42770.1|
(AL049841) putative ABC transporter transmembrane
component [Streptomyces coelicolor A3(2)]
Length = 260
Score = 68.7 bits (165), Expect = 7e-11
Identities = 68/243 (27%), Positives = 110/243 (44%), Gaps = 20/243 (8%)
Query: 9 TMVYRELKRFIRSRARVLGSLLNPLIWLIFFGKGWAGAFNFPGAKMIFGGVDYMTYLVPG 68
TM REL R+ R V+ SL+ P++ L+ FG G G +Y+ YLVPG
Sbjct: 18 TMTRRELARWGRQPVTVVVSLVFPVMLLLMFGYLVGGGRGVSG--------EYVDYLVPG 69
Query: 69 IVAMTV-FNM-GFMQGITLIWDRQFGFLKELLVAPASRVEAIIGRSIGGALMALIQGTII 126
++A+T+ F + G M +T D G + P + ++GRS L + + T +
Sbjct: 70 MLALTMAFGLEGTMIAVTQ--DLNKGVVDRFRSLPMTNGAVLVGRSAADMLQSALGLTAL 127
Query: 127 LALSFTLADLKLSG---VVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPM 183
+ + + L G + + L L A+ +G+ +A+ E Q V +L+ P+
Sbjct: 128 IGVGYALGWRAHGGPGAFLGAVGLLLLFRFAMLWIGIFLALVAGKPELVQA-VQILVWPV 186
Query: 184 TFLSGAFYPISTMPKWMQYLAKINPLTYAVDGARYYLAGINPTFS---LAIDWGVLSLLA 240
FLS AF +MP W+ + + NP++ R G A+ W L+LLA
Sbjct: 187 GFLSNAFATPDSMPGWLGTVVEWNPMSQTATAVRDLFGGPGGESGHLWAAVAW-PLALLA 245
Query: 241 VIF 243
V F
Sbjct: 246 VFF 248
>pir||S45205 nodulation protein homolog - Escherichia coli
>gi|473795|dbj|BAA05584.1| (D26562) 'ORF' [Escherichia
coli]
Length = 203
Score = 68.3 bits (164), Expect = 9e-11
Identities = 47/192 (24%), Positives = 89/192 (45%), Gaps = 10/192 (5%)
Query: 13 RELKRFIRSRARVL-GSLLNPLIWLIFFGKGWAGAFNFPGAKM-IFGGVDYMTYLVPGIV 70
+E+ RF+R + L ++ ++ I FG N G+++ G YM ++VPG++
Sbjct: 15 KEIHRFMRIWVQTLVPPVITMTLYFIIFG-------NLIGSRIGDMHGFSYMQFIVPGLI 67
Query: 71 AMTVFNMGFMQGITLIWDRQFGF-LKELLVAPASRVEAIIGRSIGGALMALIQGTIILAL 129
M+V + + + +F ++ELLVAP I G GG L G ++ A+
Sbjct: 68 MMSVITNAYANVASSFFGAKFQRNIEELLVAPVPTHVIIAGYVGGGVARGLFVGILVTAI 127
Query: 130 SFTLADLKLSGVVPTLLLAFLVGIAVSGMGMAIAMRMTSMEGFQIIVTMLMLPMTFLSGA 189
S ++ V L L + S G+ + + + ++ T ++ P+T+L G
Sbjct: 128 SLFFVPFQVHSWVFVALTLVLTAVLFSLAGLLNGVFAKTFDDISLVPTFVLTPLTYLGGV 187
Query: 190 FYPISTMPKWMQ 201
FY ++ +P + Q
Sbjct: 188 FYSLTLLPPFWQ 199
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.331 0.144 0.432
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86037987
Number of Sequences: 2977
Number of extensions: 3446388
Number of successful extensions: 11497
Number of sequences better than 1.0e-10: 42
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 11424
Number of HSP's gapped (non-prelim): 45
length of query: 257
length of database: 189,106,746
effective HSP length: 51
effective length of query: 206
effective length of database: 158,583,909
effective search space: 32668285254
effective search space used: 32668285254
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 164 (68.3 bits)