BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1925 (crcB-like) DE:CRCB PROTEIN
(123 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75108 crcb protein PAB1925 - Pyrococcus abyssi (strain Ors... 245 1e-64
pir||B71026 hypothetical protein PH1502 - Pyrococcus horikoshii ... 210 5e-54
pir||B64490 hypothetical protein homolog MJ1523 - Methanococcus ... 115 3e-25
sp|P37002|CRCB_ECOLI CRCB PROTEIN >gi|7429731|pir||F64796 crcB p... 91 4e-18
pir||A70341 conserved hypothetical protein aq_449 - Aquifex aeol... 86 2e-16
emb|CAC01544.1| (AL391039) putative integral membrane protein [S... 83 9e-16
pir||F72427 conserved hypothetical protein - Thermotoga maritima... 82 3e-15
pir||G82368 crcB protein VC0060 [imported] - Vibrio cholerae (gr... 81 6e-15
pir||H83097 conserved hypothetical protein PA4383 [imported] - P... 78 4e-14
pir||F70650 hypothetical protein Rv3069 - Mycobacterium tubercul... 78 5e-14
pir||F81397 CRCB protein homolog Cj0517 [imported] - Campylobact... 76 2e-13
pir||D71843 hypothetical protein jhp1146 - Helicobacter pylori (... 74 6e-13
dbj|BAB06705.1| (AP001517) unknown conserved protein [Bacillus h... 74 6e-13
sp|P46491|CRCB_HAEIN CRCB PROTEIN HOMOLOG >gi|3212195|gb|AAC2225... 73 1e-12
pir||A64673 conserved hypothetical integral membrane protein HP1... 73 2e-12
pir||D69827 hypothetical protein yhdV - Bacillus subtilis >gi|22... 72 2e-12
>pir||C75108 crcb protein PAB1925 - Pyrococcus abyssi (strain Orsay)
>gi|5458091|emb|CAB49580.1| (AJ248285) CRCB PROTEIN
[Pyrococcus abyssi]
Length = 123
Score = 245 bits (620), Expect = 1e-64
Identities = 123/123 (100%), Positives = 123/123 (100%)
Query: 1 MNLKTTLLLIIGGGLGALARYYISGILPVYKDFPLGTLLVNSIASFILGYLYGLLFFGFE 60
MNLKTTLLLIIGGGLGALARYYISGILPVYKDFPLGTLLVNSIASFILGYLYGLLFFGFE
Sbjct: 1 MNLKTTLLLIIGGGLGALARYYISGILPVYKDFPLGTLLVNSIASFILGYLYGLLFFGFE 60
Query: 61 VSSEWRIFLGTGFCGGLSTFSTFSYETFSLLREGEYLLAFMNVVANVLVTITLVFLGFIL 120
VSSEWRIFLGTGFCGGLSTFSTFSYETFSLLREGEYLLAFMNVVANVLVTITLVFLGFIL
Sbjct: 61 VSSEWRIFLGTGFCGGLSTFSTFSYETFSLLREGEYLLAFMNVVANVLVTITLVFLGFIL 120
Query: 121 ARR 123
ARR
Sbjct: 121 ARR 123
>pir||B71026 hypothetical protein PH1502 - Pyrococcus horikoshii
>gi|3257927|dbj|BAA30610.1| (AP000006) 123aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 123
Score = 210 bits (529), Expect = 5e-54
Identities = 100/123 (81%), Positives = 110/123 (89%)
Query: 1 MNLKTTLLLIIGGGLGALARYYISGILPVYKDFPLGTLLVNSIASFILGYLYGLLFFGFE 60
MN K LLIIGGGLGAL RYYISG+LPVYKDFP+GTL+VNS+ASF+LGY+YGLLF GF+
Sbjct: 1 MNAKIIALLIIGGGLGALTRYYISGVLPVYKDFPIGTLIVNSLASFLLGYIYGLLFSGFD 60
Query: 61 VSSEWRIFLGTGFCGGLSTFSTFSYETFSLLREGEYLLAFMNVVANVLVTITLVFLGFIL 120
+S EWRIFLGTGFCGGLSTFSTFSYETFSLLREGE LAF N+ N+LVTI LVFLGFIL
Sbjct: 61 ISPEWRIFLGTGFCGGLSTFSTFSYETFSLLREGEIWLAFANITTNILVTIFLVFLGFIL 120
Query: 121 ARR 123
ARR
Sbjct: 121 ARR 123
>pir||B64490 hypothetical protein homolog MJ1523 - Methanococcus jannaschii
>gi|1592153|gb|AAB99542.1| (U67593) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 124
Score = 115 bits (284), Expect = 3e-25
Identities = 58/119 (48%), Positives = 81/119 (67%), Gaps = 1/119 (0%)
Query: 3 LKTTLLLIIGGGLGALARYYISGILPVYKDFPLGTLLVNSIASFILGYLYGLLFFGFEVS 62
++ LL+ +GG GA+ RY ISGI+PV P GTL VN I SFILG+L F +
Sbjct: 2 IRELLLIGVGGFFGAIFRYLISGIVPVKFGLPTGTLAVNLIGSFILGFLLYCSLFA-PIP 60
Query: 63 SEWRIFLGTGFCGGLSTFSTFSYETFSLLREGEYLLAFMNVVANVLVTITLVFLGFILA 121
+E+++F+GTGFCG L+TFSTFSYETF L+ EG A +N++ NV+ + +V+ G +LA
Sbjct: 61 TEYKLFIGTGFCGALTTFSTFSYETFVLVDEGLLFKALLNILINVVGCLIMVYFGRVLA 119
>sp|P37002|CRCB_ECOLI CRCB PROTEIN >gi|7429731|pir||F64796 crcB protein - Escherichia
coli >gi|1778541|gb|AAB40824.1| (U82598) hypothetical
protein [Escherichia coli] >gi|1786842|gb|AAC73725.1|
(AE000167) orf, hypothetical protein [Escherichia coli
K12] >gi|4062247|dbj|BAA35267.1| (D90703) Hypothetical
13.8 kd protein in cspE-lipA intergenic region.
[Escherichia coli]
Length = 127
Score = 91.3 bits (223), Expect = 4e-18
Identities = 48/119 (40%), Positives = 71/119 (59%), Gaps = 1/119 (0%)
Query: 3 LKTTLLLIIGGGLGALARYYIS-GILPVYKDFPLGTLLVNSIASFILGYLYGLLFFGFEV 61
L+ L + IGGG G++AR+ +S P+++ PLGTL N I +FI+G + +
Sbjct: 2 LQLLLAVFIGGGTGSVARWLLSMRFNPLHQAIPLGTLTANLIGAFIIGIGFAWFSRMTNI 61
Query: 62 SSEWRIFLGTGFCGGLSTFSTFSYETFSLLREGEYLLAFMNVVANVLVTITLVFLGFIL 120
W++ + TGFCGGL+TFSTFS E LL+EG + A +NV N+L + + L F L
Sbjct: 62 DPVWKVLITTGFCGGLTTFSTFSAEVVFLLQEGRFGWALLNVFVNLLGSFAMTALAFWL 120
>pir||A70341 conserved hypothetical protein aq_449 - Aquifex aeolicus
>gi|2983116|gb|AAC06721.1| (AE000690) hypothetical
protein [Aquifex aeolicus]
Length = 124
Score = 85.8 bits (209), Expect = 2e-16
Identities = 45/112 (40%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 11 IGGGLGALARYYISGILPVYK--DFPLGTLLVNSIASFILGYLYGLLFFGFEVSSEWRIF 68
+GG +G+ R+ +S ++ + FP+GTL VN + +F +G+ + L V+ R
Sbjct: 9 LGGAIGSALRFLLSKVVQEHFGISFPVGTLFVNLVGAFFIGFFFAYLVDKLAVNPHARAL 68
Query: 69 LGTGFCGGLSTFSTFSYETFSLLREGEYLLAFMNVVANVLVTITLVFLGFIL 120
L TG GGL+TFST+SYE+FSLLREGE L + ++ I FLG+IL
Sbjct: 69 LITGLLGGLTTFSTYSYESFSLLREGETLKFLAYTLGTNVLGIFFTFLGYIL 120
>emb|CAC01544.1| (AL391039) putative integral membrane protein [Streptomyces
coelicolor A3(2)]
Length = 124
Score = 83.5 bits (203), Expect = 9e-16
Identities = 51/117 (43%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Query: 7 LLLIIGGGLGALARYYISGILPVYKD--FPLGTLLVNSIASFILGYLYGLLFFGFEVSSE 64
LL++ GG +GA RY + D FP GT VN I S +LG L G G V S+
Sbjct: 4 LLVVAGGMIGAPLRYLTDRAVQSRHDSVFPWGTFTVNVIGSVVLGLLTGAALAG-AVGSD 62
Query: 65 WRIFLGTGFCGGLSTFSTFSYETFSLLREGEYLLAFMNVVANVLVTITLVFLGFILA 121
R+ LGTG CG L+T+STFSYET L G L A +NV +V + F G LA
Sbjct: 63 LRLLLGTGLCGALTTYSTFSYETLRLTETGARLHAAVNVGGSVAAGLVAAFAGVTLA 119
>pir||F72427 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4980504|gb|AAD35114.1|AE001690_8 (AE001690)
conserved hypothetical protein [Thermotoga maritima]
Length = 127
Score = 81.5 bits (198), Expect = 3e-15
Identities = 47/120 (39%), Positives = 65/120 (54%), Gaps = 6/120 (5%)
Query: 7 LLLIIGGGLGALARYYIS----GILPVYKDFPLGTLLVNSIASFILGYLYGLLFFGFEVS 62
L + GG +GA+ RY +S +LP + PLGT++VNS+ SF L +L +S
Sbjct: 7 LTIAFGGAIGAVLRYLVSRTINSLLP-FSYIPLGTIIVNSVGSFFLSFLMFAAIEKVPLS 65
Query: 63 SEWRIFLGTGFCGGLSTFSTFSYETFSLLREGEYLLAFMNVVANVLVTITLVFLGFILAR 122
E +F GTG G +TFSTF+YET SL+ E +AN+L T + G IL R
Sbjct: 66 KEAILFFGTGLLGAFTTFSTFTYETLSLIEESP-ARGVAYALANLLFAFTCAYFGMILGR 124
>pir||G82368 crcB protein VC0060 [imported] - Vibrio cholerae (group O1 strain
N16961) >gi|9654455|gb|AAF93238.1| (AE004097) crcB
protein [Vibrio cholerae]
Length = 126
Score = 80.8 bits (196), Expect = 6e-15
Identities = 41/112 (36%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 9 LIIGGGLGALARYYISGILPVY--KDFPLGTLLVNSIASFILGYLYGLLFFGFEVSSEWR 66
+ +GG +GA AR+ +S I + FP+GTL VN + SFI+G L + + W+
Sbjct: 9 IALGGAVGACARFLVSEICVTLFGRGFPIGTLTVNVVGSFIMGVLIACVENEWLSPYPWK 68
Query: 67 IFLGTGFCGGLSTFSTFSYETFSLLREGEYLLAFMNVVANVLVTITLVFLGF 118
+G GF G L+TFSTFS + L+++G + NV+ NV+++I+ ++GF
Sbjct: 69 QVIGLGFLGALTTFSTFSMDNVLLMQQGAFFKMGANVLLNVILSISAAWIGF 120
>pir||H83097 conserved hypothetical protein PA4383 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950613|gb|AAG07771.1|AE004854_7 (AE004854)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 127
Score = 78.0 bits (189), Expect = 4e-14
Identities = 43/118 (36%), Positives = 66/118 (55%), Gaps = 7/118 (5%)
Query: 4 KTTLLLIIGGGLGALARYYI----SGILPVYKDFPLGTLLVNSIASFILGYLYGLLFFGF 59
K+ L + +G LGAL R+++ + +LP P GTLL N + +++G
Sbjct: 3 KSILAIALGAALGALLRWFLGLKLNSLLP---SIPPGTLLANLVGGYVIGAAIAYFAQAP 59
Query: 60 EVSSEWRIFLGTGFCGGLSTFSTFSYETFSLLREGEYLLAFMNVVANVLVTITLVFLG 117
++ EWR+ + TGFCGGL+TFSTFS E SLL+EG A + +V ++ + LG
Sbjct: 60 GIAPEWRLLIITGFCGGLTTFSTFSAEVVSLLQEGRLGWAAGAIATHVSGSLLMTLLG 117
>pir||F70650 hypothetical protein Rv3069 - Mycobacterium tuberculosis (strain
H37RV) >gi|1781144|emb|CAB06254.1| (Z83866) hypothetical
protein Rv3069 [Mycobacterium tuberculosis]
Length = 132
Score = 77.6 bits (188), Expect = 5e-14
Identities = 45/113 (39%), Positives = 63/113 (54%), Gaps = 1/113 (0%)
Query: 12 GGGLGALARYYISGI-LPVYKDFPLGTLLVNSIASFILGYLYGLLFFGFEVSSEWRIFLG 70
GG LGALAR +S + +P +P T VN + +F++GY L +SS R LG
Sbjct: 15 GGALGALARAALSALAIPDPARWPWPTFTVNVVGAFLVGYFTTRLLERLPLSSYRRPLLG 74
Query: 71 TGFCGGLSTFSTFSYETFSLLREGEYLLAFMNVVANVLVTITLVFLGFILARR 123
TG CGGL+TFST ET S++ G + LA V ++ + + V L +L RR
Sbjct: 75 TGLCGGLTTFSTMQVETISMIEHGHWGLAAAYSVVSITLGLLAVHLATVLVRR 127
>pir||F81397 CRCB protein homolog Cj0517 [imported] - Campylobacter jejuni
(strain NCTC 11168) >gi|6967986|emb|CAB75154.1|
(AL139075) CRCB protein homolog [Campylobacter jejuni]
Length = 122
Score = 75.7 bits (183), Expect = 2e-13
Identities = 47/122 (38%), Positives = 69/122 (56%), Gaps = 7/122 (5%)
Query: 3 LKTTLLLIIGGGLGALARYYISGILPVYKDFP----LGTLLVNSIASFILGYLYGLLFFG 58
L T L++ GG +GA+ R + I V K FP GTL VN + SFI+G L+
Sbjct: 2 LNTLLVVGFGGFIGAILR--MLSINLVNKFFPYSISFGTLFVNVLGSFIIGLLFSYAQ-N 58
Query: 59 FEVSSEWRIFLGTGFCGGLSTFSTFSYETFSLLREGEYLLAFMNVVANVLVTITLVFLGF 118
+S + F+ TGF G +TFSTFSY+ LL+ G YL +N++ NV + + +LGF
Sbjct: 59 KGLSPLLKSFISTGFLGAFTTFSTFSYQNLLLLQSGNYLHFALNIILNVFLCLFAAWLGF 118
Query: 119 IL 120
++
Sbjct: 119 LI 120
>pir||D71843 hypothetical protein jhp1146 - Helicobacter pylori (strain J99)
>gi|4155740|gb|AAD06719.1| (AE001542) putative
[Helicobacter pylori J99]
Length = 130
Score = 74.1 bits (179), Expect = 6e-13
Identities = 44/126 (34%), Positives = 72/126 (56%), Gaps = 6/126 (4%)
Query: 1 MNLKTTLLLIIGGGLGALARYYISGILP----VYKDFPLGTLLVNSIASFILGYLYGLLF 56
MNL L +GG +G+ RY++ ++P +++ FPLGT VN I FI+G++ G L
Sbjct: 1 MNL-VFLWAALGGAIGSSLRYFVGKMMPSKFLMFESFPLGTFSVNLIGCFIIGFM-GHLA 58
Query: 57 FGFEVSSEWRIFLGTGFCGGLSTFSTFSYETFSLLREGEYLLAFMNVVANVLVTITLVFL 116
++ IF TG GG +TFS++ +T LL++ +YL A V+ L+ + V +
Sbjct: 59 AKKVFGDDFGIFFVTGVLGGFTTFSSYGLDTLKLLQKSQYLEAISYVLGTNLLGLIGVAI 118
Query: 117 GFILAR 122
G+ LA+
Sbjct: 119 GWFLAK 124
>dbj|BAB06705.1| (AP001517) unknown conserved protein [Bacillus halodurans]
Length = 127
Score = 74.1 bits (179), Expect = 6e-13
Identities = 47/124 (37%), Positives = 70/124 (55%), Gaps = 9/124 (7%)
Query: 1 MNLKTTLLLIIGGGLGALARYYISG-ILPVYKD--FPLGTLLVNSIASFILGYLYGLLF- 56
MNL L++ IGGG+GA+ARY + ++ + D FP+ L+VN + SF LG +GL +
Sbjct: 1 MNL---LIVAIGGGIGAIARYLVGQWMMKRFPDPPFPIAMLVVNLLGSFGLGAFFGLYYH 57
Query: 57 --FGFEVSSEWRIFLGTGFCGGLSTFSTFSYETFSLLREGEYLLAFMNVVANVLVTITLV 114
F +F G GF G +T+STFS E L+RE E+ F V+ +++ +I
Sbjct: 58 ELFAASYDDIGYLFGGIGFFGAFTTYSTFSVEAVLLIREREWKKLFSYVLLSIVGSIAAF 117
Query: 115 FLGF 118
LGF
Sbjct: 118 LLGF 121
>sp|P46491|CRCB_HAEIN CRCB PROTEIN HOMOLOG >gi|3212195|gb|AAC22255.1| (U32741) crcB
protein [Haemophilus influenzae Rd]
Length = 160
Score = 73.4 bits (177), Expect = 1e-12
Identities = 42/117 (35%), Positives = 66/117 (55%), Gaps = 3/117 (2%)
Query: 3 LKTTLLLIIGGGLGALARYYISGIL--PVYKDFPLGTLLVNSIASFILGYLYGLLFFGFE 60
++ L + G LGA R+ I G+L P++ F GTL+ N I+G L GL + +
Sbjct: 1 MQALLFISYGAILGASLRWAI-GLLFNPLFSSFAFGTLIANLFGCLIIGVLLGLFWQFPQ 59
Query: 61 VSSEWRIFLGTGFCGGLSTFSTFSYETFSLLREGEYLLAFMNVVANVLVTITLVFLG 117
+S+EWR+FL TGF G L+TFS+FS E L ++L F ++ ++ + + LG
Sbjct: 60 ISAEWRLFLITGFLGSLTTFSSFSSEVVELFFNDKWLNGFCVLMMHLFGCLAMTVLG 116
>pir||A64673 conserved hypothetical integral membrane protein HP1225 -
Helicobacter pylori (strain 26695)
>gi|2314388|gb|AAD08270.1| (AE000628) conserved
hypothetical integral membrane protein [Helicobacter
pylori 26695]
Length = 130
Score = 72.6 bits (175), Expect = 2e-12
Identities = 37/116 (31%), Positives = 68/116 (57%), Gaps = 5/116 (4%)
Query: 11 IGGGLGALARYYISGILP----VYKDFPLGTLLVNSIASFILGYLYGLLFFGFEVSSEWR 66
+GG +G+ RY++ ++P +++ FPLGT VN I F++G++ G L ++
Sbjct: 10 LGGAIGSSLRYFVGKMMPSKFLMFESFPLGTFSVNIIGCFVIGFM-GHLAVKKVFGDDFG 68
Query: 67 IFLGTGFCGGLSTFSTFSYETFSLLREGEYLLAFMNVVANVLVTITLVFLGFILAR 122
IF TG GG +TFS++ +T LL++ +Y+ A + ++ +T V +G+ LA+
Sbjct: 69 IFFVTGVLGGFTTFSSYGLDTLKLLQKSQYIEAVSYALGTNILGLTGVAIGWFLAK 124
>pir||D69827 hypothetical protein yhdV - Bacillus subtilis
>gi|2226217|emb|CAA74506.1| (Y14082) hypothetical
protein [Bacillus subtilis] >gi|2633296|emb|CAB12800.1|
(Z99109) yhdV [Bacillus subtilis]
Length = 131
Score = 72.2 bits (174), Expect = 2e-12
Identities = 47/121 (38%), Positives = 65/121 (52%), Gaps = 3/121 (2%)
Query: 3 LKTTLLLIIGGGLGALARYYISGILPVYKDFPLGTLLVNSIASFILGYLYGLLFFGFEVS 62
+K + IGG LGA RY ++ + + FP T L N+ S +LG L G G +
Sbjct: 1 MKIYSAVFIGGALGACLRYGLNLWIHTGQ-FPAATWLENAAGSLLLGILTGFFMIGAK-R 58
Query: 63 SEWRIFLGTGFCGGLSTFSTFSYETFSLLREGEYLLAFMNVVANVLVTITLVFLGFILAR 122
FLGTGFCGG +T STFS ET LL +G+ LA + V A+++ I +G + R
Sbjct: 59 PLLSAFLGTGFCGGFTTMSTFSKETVMLL-QGQPSLALLYVAASLISGIIFALIGVFVGR 117
Query: 123 R 123
R
Sbjct: 118 R 118
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.332 0.151 0.448
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44475812
Number of Sequences: 2977
Number of extensions: 1843079
Number of successful extensions: 6090
Number of sequences better than 1.0e-10: 16
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 6063
Number of HSP's gapped (non-prelim): 16
length of query: 123
length of database: 189,106,746
effective HSP length: 47
effective length of query: 76
effective length of database: 160,977,857
effective search space: 12234317132
effective search space used: 12234317132
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 160 (66.7 bits)