BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1926 (PAB1926) DE:Hypothetical protein
(127 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75108 hypothetical protein PAB1926 - Pyrococcus abyssi (st... 258 1e-68
pir||C71026 hypothetical protein PH1503 - Pyrococcus horikoshii ... 247 5e-65
emb|CAC01543.1| (AL391039) hypothetical protein [Streptomyces co... 94 8e-19
pir||G72427 conserved hypothetical protein - Thermotoga maritima... 89 3e-17
pir||B70341 hypothetical protein aq_450 - Aquifex aeolicus >gi|2... 81 6e-15
pir||C64490 hypothetical protein MJ1524 - Methanococcus jannasch... 75 3e-13
>pir||B75108 hypothetical protein PAB1926 - Pyrococcus abyssi (strain Orsay)
>gi|5458090|emb|CAB49579.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 127
Score = 258 bits (653), Expect = 1e-68
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MVEVEHWNTLRLRIYIGENDRWEGKPLYKAIVEKLREMGIAGATVYRGIYGFGKKSRIHS 60
MVEVEHWNTLRLRIYIGENDRWEGKPLYKAIVEKLREMGIAGATVYRGIYGFGKKSRIHS
Sbjct: 1 MVEVEHWNTLRLRIYIGENDRWEGKPLYKAIVEKLREMGIAGATVYRGIYGFGKKSRIHS 60
Query: 61 SDVLRLSTDLPIVIEVVDRGHNIEKAVNVIKPMIKDGMITVEPTIVLWVGSKEEIKKFEE 120
SDVLRLSTDLPIVIEVVDRGHNIEKAVNVIKPMIKDGMITVEPTIVLWVGSKEEIKKFEE
Sbjct: 61 SDVLRLSTDLPIVIEVVDRGHNIEKAVNVIKPMIKDGMITVEPTIVLWVGSKEEIKKFEE 120
Query: 121 DAIAERR 127
DAIAERR
Sbjct: 121 DAIAERR 127
>pir||C71026 hypothetical protein PH1503 - Pyrococcus horikoshii
>gi|3257928|dbj|BAA30611.1| (AP000006) 130aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 130
Score = 247 bits (623), Expect = 5e-65
Identities = 116/127 (91%), Positives = 125/127 (98%)
Query: 1 MVEVEHWNTLRLRIYIGENDRWEGKPLYKAIVEKLREMGIAGATVYRGIYGFGKKSRIHS 60
MVEVEHWNTLRLRIYIGEND+WEG+PLYK IVEKLREMGIAGATVYRGIYGFGKKSR+HS
Sbjct: 4 MVEVEHWNTLRLRIYIGENDKWEGRPLYKVIVEKLREMGIAGATVYRGIYGFGKKSRVHS 63
Query: 61 SDVLRLSTDLPIVIEVVDRGHNIEKAVNVIKPMIKDGMITVEPTIVLWVGSKEEIKKFEE 120
SDV+RLSTDLPI++EVVDRGHNIEK VNVIKPMIKDGMITVEPTIVLWVG++EEIKKFEE
Sbjct: 64 SDVIRLSTDLPIIVEVVDRGHNIEKVVNVIKPMIKDGMITVEPTIVLWVGTQEEIKKFEE 123
Query: 121 DAIAERR 127
DAIAER+
Sbjct: 124 DAIAERQ 130
>emb|CAC01543.1| (AL391039) hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 114
Score = 93.6 bits (229), Expect = 8e-19
Identities = 39/100 (39%), Positives = 66/100 (66%)
Query: 8 NTLRLRIYIGENDRWEGKPLYKAIVEKLREMGIAGATVYRGIYGFGKKSRIHSSDVLRLS 67
+ LRL +Y+GEND W +PLY IV + G+AGA+V+RG+ GFG S +H++ +L LS
Sbjct: 7 SALRLTVYVGENDTWHHRPLYSEIVHRAHAAGLAGASVFRGVEGFGASSIVHTTRLLSLS 66
Query: 68 TDLPIVIEVVDRGHNIEKAVNVIKPMIKDGMITVEPTIVL 107
DLP+ + VVD + + ++ ++ +G++T++P V+
Sbjct: 67 EDLPVAVVVVDTEERVRGFLPLLDELVTEGLVTLDPCEVV 106
>pir||G72427 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4980505|gb|AAD35115.1|AE001690_9 (AE001690)
conserved hypothetical protein [Thermotoga maritima]
Length = 102
Score = 88.5 bits (216), Expect = 3e-17
Identities = 43/99 (43%), Positives = 62/99 (62%)
Query: 12 LRIYIGENDRWEGKPLYKAIVEKLREMGIAGATVYRGIYGFGKKSRIHSSDVLRLSTDLP 71
L+IY+GE D+ GKPL++ +V++ E+G+ G TVYRGI GFG K +H SD LS DLP
Sbjct: 4 LKIYLGEKDKHSGKPLFEYLVKRAYELGMKGVTVYRGIMGFGHKRHMHRSDFFSLSPDLP 63
Query: 72 IVIEVVDRGHNIEKAVNVIKPMIKDGMITVEPTIVLWVG 110
IV+E+VD I + I + DG++ V+ +G
Sbjct: 64 IVLEIVDEEERINLFLKEIDNIDFDGLVFTADVNVVKMG 102
>pir||B70341 hypothetical protein aq_450 - Aquifex aeolicus
>gi|2983113|gb|AAC06718.1| (AE000690) putative protein
[Aquifex aeolicus]
Length = 105
Score = 80.8 bits (196), Expect = 6e-15
Identities = 37/98 (37%), Positives = 64/98 (64%), Gaps = 1/98 (1%)
Query: 12 LRIYIGENDRWEGKPLYKAIVEKLREMGIAGATVYRGIYGFGKKSRIHSSDVLRLSTDLP 71
LRI+ E++ +EGKP YK ++E+ +E G+ GATV+R I G+GK I + +L + LP
Sbjct: 9 LRIFTSEDESFEGKPFYKYLLERAKERGLEGATVFRAIAGYGKTKEIRKHKLFQLRSSLP 68
Query: 72 IVIEVVDRGHNIEKAVNVIKPMIKDGMITVEPTIVLWV 109
+V+E++D I++ + IK +G+IT+E V+++
Sbjct: 69 VVVEIIDEEEKIKRFLEEIKGK-HNGLITLEDVEVIYL 105
>pir||C64490 hypothetical protein MJ1524 - Methanococcus jannaschii
>gi|1592154|gb|AAB99550.1| (U67593) M. jannaschii
predicted coding region MJ1524 [Methanococcus
jannaschii]
Length = 108
Score = 75.3 bits (182), Expect = 3e-13
Identities = 38/91 (41%), Positives = 63/91 (68%), Gaps = 2/91 (2%)
Query: 12 LRIYIGENDRWEGKPLYKAIVEKLREMGIAGATVYRGIYGFGKKSRIHSSDVLRLSTDLP 71
L+IY+ E D++EG+ +YK I++ L+ GI+GATVY+GI G+G + + D+ RLS +LP
Sbjct: 7 LKIYLREGDKFEGELMYKHIMKILKREGISGATVYKGICGYGVRG-VAEFDIFRLSVNLP 65
Query: 72 IVIEVVDRGHNIEKAVNVIKPMIK-DGMITV 101
++IE VD NI + + + +IK +G+I +
Sbjct: 66 VIIECVDIEENINRVLPKLYEVIKNNGLIII 96
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.140 0.407
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47027979
Number of Sequences: 2977
Number of extensions: 1804813
Number of successful extensions: 4058
Number of sequences better than 1.0e-10: 6
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4052
Number of HSP's gapped (non-prelim): 6
length of query: 127
length of database: 189,106,746
effective HSP length: 52
effective length of query: 75
effective length of database: 157,985,422
effective search space: 11848906650
effective search space used: 11848906650
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 160 (66.7 bits)