BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1927 (PAB1927) DE:Hypothetical protein
         (118 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75108 hypothetical protein PAB1927 - Pyrococcus abyssi (st...   240  5e-63
pir||E71026 hypothetical protein PH1505 - Pyrococcus horikoshii ...   216  8e-56
pir||F69225 hypothetical protein MTH938 - Methanobacterium therm...    81  4e-15

>pir||A75108 hypothetical protein PAB1927 - Pyrococcus abyssi (strain Orsay)
           >gi|5458089|emb|CAB49578.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 118
           
 Score =  240 bits (605), Expect = 5e-63
 Identities = 118/118 (100%), Positives = 118/118 (100%)

Query: 1   MKVEEVRFGHVRIDGKDFDHDIVIYPSGKIERRKKEISKRKHGTSHKLDPEELKEYLIED 60
           MKVEEVRFGHVRIDGKDFDHDIVIYPSGKIERRKKEISKRKHGTSHKLDPEELKEYLIED
Sbjct: 1   MKVEEVRFGHVRIDGKDFDHDIVIYPSGKIERRKKEISKRKHGTSHKLDPEELKEYLIED 60

Query: 61  FDLLLVGTGIYGMLSLLPESRELVKDKEVIEKPTKEALKLLEELWSKKKILAIIHVTC 118
           FDLLLVGTGIYGMLSLLPESRELVKDKEVIEKPTKEALKLLEELWSKKKILAIIHVTC
Sbjct: 61  FDLLLVGTGIYGMLSLLPESRELVKDKEVIEKPTKEALKLLEELWSKKKILAIIHVTC 118


>pir||E71026 hypothetical protein PH1505 - Pyrococcus horikoshii
           >gi|3257930|dbj|BAA30613.1| (AP000006) 118aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 118
           
 Score =  216 bits (544), Expect = 8e-56
 Identities = 102/118 (86%), Positives = 115/118 (97%)

Query: 1   MKVEEVRFGHVRIDGKDFDHDIVIYPSGKIERRKKEISKRKHGTSHKLDPEELKEYLIED 60
           MK+EEVRFG V+IDGK+FDHDIVIYPSG+IERR KEISK+KHGTSHKLDPEEL++YL+ED
Sbjct: 1   MKIEEVRFGLVKIDGKEFDHDIVIYPSGRIERRMKEISKKKHGTSHKLDPEELEKYLVED 60

Query: 61  FDLLLVGTGIYGMLSLLPESRELVKDKEVIEKPTKEALKLLEELWSKKKILAIIHVTC 118
           FD+LLVGTGIYGMLSLLPES++LV+DKEVIEKPTKEALKLLEELW KK+ILAIIHVTC
Sbjct: 61  FDVLLVGTGIYGMLSLLPESKKLVEDKEVIEKPTKEALKLLEELWGKKRILAIIHVTC 118


>pir||F69225 hypothetical protein MTH938 - Methanobacterium thermoautotrophicum
           (strain Delta H) >gi|2622036|gb|AAB85436.1| (AE000868)
           unknown [Methanobacterium thermoautotrophicum]
           Length = 111
           
 Score = 81.1 bits (197), Expect = 4e-15
 Identities = 47/115 (40%), Positives = 72/115 (61%), Gaps = 8/115 (6%)

Query: 5   EVRFGHVRIDGKDFDHDIVIYPSGKIERRKKEISKRKHGTSHKLDPEELKEYLIEDFDLL 64
           + RFG V   G+++  DIV++  G +  R+KEIS+RK+GTSH +  EEL+E L E  + +
Sbjct: 4   DCRFGSVTYRGREYRSDIVVHVDGSVTPRRKEISRRKYGTSHVMAEEELEELLEEKPESI 63

Query: 65  LVGTGIYGMLSLLPESRELVKDKEVIEKPTKEALKLL-EELWSKKKILAIIHVTC 118
           ++G+G++G L     S     D  V+  PT EA+K   EE  + +++ AIIHVTC
Sbjct: 64  IIGSGVHGALETGFRS-----DATVL--PTCEAIKRYNEERSAGRRVAAIIHVTC 111


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.141    0.396 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47716622
Number of Sequences: 2977
Number of extensions: 1971091
Number of successful extensions: 8471
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8467
Number of HSP's gapped (non-prelim): 3
length of query: 118
length of database: 189,106,746
effective HSP length: 53
effective length of query: 65
effective length of database: 157,386,935
effective search space: 10230150775
effective search space used: 10230150775
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 160 (66.7 bits)