BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1928 (PAB1928) DE:Hypothetical protein
         (244 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75107 hypothetical protein PAB1928 - Pyrococcus abyssi (st...   478  e-134
pir||F71026 hypothetical protein PH1506 - Pyrococcus horikoshii ...   377  e-104
sp|Q57923|Y500_METJA HYPOTHETICAL PROTEIN MJ0500 >gi|2128346|pir...   224  6e-58

>pir||H75107 hypothetical protein PAB1928 - Pyrococcus abyssi (strain Orsay)
           >gi|5458088|emb|CAB49577.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 244
           
 Score =  478 bits (1216), Expect = e-134
 Identities = 244/244 (100%), Positives = 244/244 (100%)

Query: 1   MILSKIKKEALKLIDELELLDFSFALPYTWVLVKGEEGKSLGVAMTLPEEVQRYTSSIEE 60
           MILSKIKKEALKLIDELELLDFSFALPYTWVLVKGEEGKSLGVAMTLPEEVQRYTSSIEE
Sbjct: 1   MILSKIKKEALKLIDELELLDFSFALPYTWVLVKGEEGKSLGVAMTLPEEVQRYTSSIEE 60

Query: 61  PSLEEFIRKADSLNVIERTLGVAAINAVSQYYIDLSDAFWGDVLDLVQGDVKRIAVLGNM 120
           PSLEEFIRKADSLNVIERTLGVAAINAVSQYYIDLSDAFWGDVLDLVQGDVKRIAVLGNM
Sbjct: 61  PSLEEFIRKADSLNVIERTLGVAAINAVSQYYIDLSDAFWGDVLDLVQGDVKRIAVLGNM 120

Query: 121 PPIVKALRSKYEVYVFERNPKLWDRETYSDALEYDLLPKMDVIIASASCIVNGTIDMILD 180
           PPIVKALRSKYEVYVFERNPKLWDRETYSDALEYDLLPKMDVIIASASCIVNGTIDMILD
Sbjct: 121 PPIVKALRSKYEVYVFERNPKLWDRETYSDALEYDLLPKMDVIIASASCIVNGTIDMILD 180

Query: 181 RAKKAKLLILTGPTAQLLPEFLKGTKVTHLAAMKVVDIDRAILKLKLGSFRGFEEGSRKY 240
           RAKKAKLLILTGPTAQLLPEFLKGTKVTHLAAMKVVDIDRAILKLKLGSFRGFEEGSRKY
Sbjct: 181 RAKKAKLLILTGPTAQLLPEFLKGTKVTHLAAMKVVDIDRAILKLKLGSFRGFEEGSRKY 240

Query: 241 IVKV 244
           IVKV
Sbjct: 241 IVKV 244


>pir||F71026 hypothetical protein PH1506 - Pyrococcus horikoshii
           >gi|3257931|dbj|BAA30614.1| (AP000006) 248aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 248
           
 Score =  377 bits (959), Expect = e-104
 Identities = 182/245 (74%), Positives = 223/245 (90%), Gaps = 1/245 (0%)

Query: 1   MILSKIKKEALKLIDELELLDFSFALPYTWVLVKGEEGKSLGVAMTLPEEVQRYTSSIEE 60
           M+LS+IKK+A++L ++L+L+DFSF LPYTWVLV+G EG++LGVAMTLPEEVQRYT+SIEE
Sbjct: 4   MLLSRIKKKAMELAEDLKLVDFSFGLPYTWVLVEGIEGRALGVAMTLPEEVQRYTNSIEE 63

Query: 61  PSLEEFIRKADSLNVIERTLGVAAINAVSQYYIDLSDAFWGDVLDLVQGD-VKRIAVLGN 119
           PSL EFI KADSLN+IERTLGVAAINAVSQYYIDL +A W DV +L+Q D +KRIA++GN
Sbjct: 64  PSLLEFIDKADSLNIIERTLGVAAINAVSQYYIDLREAKWIDVTELIQQDEIKRIAIIGN 123

Query: 120 MPPIVKALRSKYEVYVFERNPKLWDRETYSDALEYDLLPKMDVIIASASCIVNGTIDMIL 179
           MPP+V+ L+ KYEVYVFERN KLWDR+TYSD LEY +LP++D IIASASCIVNGT+DMIL
Sbjct: 124 MPPVVRTLKEKYEVYVFERNMKLWDRDTYSDTLEYHILPEVDGIIASASCIVNGTLDMIL 183

Query: 180 DRAKKAKLLILTGPTAQLLPEFLKGTKVTHLAAMKVVDIDRAILKLKLGSFRGFEEGSRK 239
           DRAKKAKL+++TGPT QLLPEFLKGTKVTHLA+MKV +I++A++KLKLGSF+GFE  S K
Sbjct: 184 DRAKKAKLIVITGPTGQLLPEFLKGTKVTHLASMKVTNIEKALVKLKLGSFKGFESESIK 243

Query: 240 YIVKV 244
           Y+++V
Sbjct: 244 YVIEV 248


>sp|Q57923|Y500_METJA HYPOTHETICAL PROTEIN MJ0500 >gi|2128346|pir||D64362 hypothetical
           protein MJ0500 - Methanococcus jannaschii
           >gi|1591203|gb|AAB98491.1| (U67500) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 259
           
 Score =  224 bits (566), Expect = 6e-58
 Identities = 125/256 (48%), Positives = 176/256 (67%), Gaps = 13/256 (5%)

Query: 1   MILSKIKKEALKLIDELE----LLDFSFALPYTWVLVKGEEGKSLGVAMTLPEEVQRYTS 56
           MI+ +IK+ AL L+ E E    ++DFSFALPY++VL++    K+LGVAMTL EE + + +
Sbjct: 4   MIIEEIKERALNLLSEKEEDFKVIDFSFALPYSYVLIESNGKKALGVAMTLLEEYRGHGN 63

Query: 57  SIE---EPSLEEFIRKADSLNVIERTLGVAAINAVSQYYIDLSDAFWGDVLDLV--QGDV 111
             +     +LEEFI  ADS +++ERTLGVAAINAVSQYY +  +A   D  +LV  + D+
Sbjct: 64  RKDLNINKNLEEFINMADSFDIVERTLGVAAINAVSQYYFNF-EANGKDAAELVLNRDDI 122

Query: 112 KRIAVLGNMPPIVKALRS--KYEVYVFERNPKLWDRETYSDALEYDLLPKMDVIIASASC 169
           K+IA +GNM P+V  L+   K+++YVFER+P L      SDA EY LLP+MD +  S + 
Sbjct: 123 KKIAFVGNMIPVVNMLKKSEKFDIYVFERSPSLLMDGVLSDAFEYRLLPEMDAVFISGTT 182

Query: 170 IVNGTIDMILDRAKKAKLLILTGPTAQLLPEFLKGTKVTHLAAMKVVDIDRAILKLKLGS 229
           ++N T+D +LDRAK AKL IL GPTAQ LPE  KG  +TH+A+ K++D+D+A+L LK  S
Sbjct: 183 LLNDTLDFVLDRAKNAKLKILVGPTAQSLPELFKGFGITHIASTKIIDVDKALLYLKFAS 242

Query: 230 FRG-FEEGSRKYIVKV 244
               F+  S+KY ++V
Sbjct: 243 SSMLFKGASKKYTMEV 258


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.138    0.386 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83051160
Number of Sequences: 2977
Number of extensions: 3204414
Number of successful extensions: 9805
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9798
Number of HSP's gapped (non-prelim): 3
length of query: 244
length of database: 189,106,746
effective HSP length: 57
effective length of query: 187
effective length of database: 154,992,987
effective search space: 28983688569
effective search space used: 28983688569
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 164 (68.3 bits)