BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1931 (noxA-2) DE:NADH oxidase (noxA-2)
(440 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75107 NADH oxidase (noxa-2) PAB1931 - Pyrococcus abyssi (s... 862 0.0
pir||A71027 probable NADH oxidase - Pyrococcus horikoshii >gi|32... 803 0.0
pir||A69047 NADH oxidase - Methanobacterium thermoautotrophicum ... 383 e-105
sp|Q58065|NAOX_METJA PUTATIVE NADH OXIDASE (NOXASE) >gi|2129157|... 373 e-102
gi|11498012 NADH oxidase (noxA-3) [Archaeoglobus fulgidus] >gi|7... 284 1e-75
pir||H71171 probable NADH oxidase - Pyrococcus horikoshii >gi|32... 264 2e-69
pir||H75052 NADH oxidase (noxa-1) PAB0936 - Pyrococcus abyssi (s... 258 1e-67
gi|11498007 NADH oxidase (noxA-2) [Archaeoglobus fulgidus] >gi|7... 253 3e-66
pir||B82434 probable NADH oxidase VCA0644 [imported] - Vibrio ch... 246 3e-64
emb|CAC11966.1| (AL445065) NADH peroxidase related protein [Ther... 242 6e-63
gi|11499442 NADH oxidase (noxA-5) [Archaeoglobus fulgidus] >gi|7... 230 3e-59
pir||G70190 NADH oxidase, water-forming (nox) homolog - Lyme dis... 227 2e-58
pir||D72383 NADH oxidase - Thermotoga maritima (strain MSB8) >gi... 224 2e-57
pir||T34719 probable flavoprotein oxidoreductase - Streptomyces ... 222 5e-57
dbj|BAB07495.1| (AP001519) NADH oxidase (nox) [Bacillus halodurans] 219 4e-56
gb|AAK42445.1| NADH oxidase [Sulfolobus solfataricus] 218 1e-55
gi|11497870 NADH oxidase (noxA-1) [Archaeoglobus fulgidus] >gi|7... 214 2e-54
gi|11498556 NADH oxidase (noxA-4) [Archaeoglobus fulgidus] >gi|7... 212 5e-54
dbj|BAB04332.1| (AP001509) assimilatory nitrite reductase (subun... 211 1e-53
pir||B75451 NADH oxidase - Deinococcus radiodurans (strain R1) >... 210 2e-53
pir||D70372 NADH oxidase - Aquifex aeolicus >gi|2983379|gb|AAC06... 208 1e-52
gb|AAB59997.1| (U19610) NADH oxidase [Brachyspira hyodysenteriae... 206 3e-52
gb|AAD20825.1| (AF029224) NirB [Staphylococcus carnosus] 205 1e-51
sp|P37061|NAOX_ENTFA NADH OXIDASE (NOXASE) >gi|282279|pir||S2696... 203 3e-51
pir||D72382 hypothetical protein TM0395 - Thermotoga maritima (s... 200 3e-50
gb|AAC78820.1| (AF060811) NADH oxidase [Serpulina intermedia] 198 1e-49
gb|AAC78821.1| (AF060812) NADH oxidase [Serpulina intermedia] 195 7e-49
pir||C70319 nitrite reductase (NAD(P)H) large subunit - Aquifex ... 194 2e-48
gb|AAC78810.1| (AF060801) NADH oxidase [Brachyspira hyodysenteriae] 193 3e-48
gb|AAC78824.1| (AF060815) NADH oxidase [Serpulina sp. P280/1] 192 6e-48
gb|AAC78809.1| (AF060800) NADH oxidase [Brachyspira hyodysenteriae] 192 8e-48
pir||H72337 oxidoreductase - Thermotoga maritima (strain MSB8) >... 191 1e-47
gb|AAC78822.1| (AF060813) NADH oxidase [Serpulina murdochii] 189 7e-47
gb|AAC78814.1| (AF060805) NADH oxidase [Brachyspira innocens] 187 2e-46
gb|AAC78823.1| (AF060814) NADH oxidase [Serpulina alvinipulli] 187 2e-46
gb|AAC78812.1| (AF060803) NADH oxidase [Serpulina murdochii] 187 2e-46
pir||B71078 probable NADH oxidase - Pyrococcus horikoshii >gi|32... 187 2e-46
emb|CAA32416.1| (X14202) NADH-dependent nitrite reductase (nirB)... 187 3e-46
gb|AAC78818.1| (AF060809) NADH oxidase [Brachyspira pilosicoli] 187 3e-46
sp|P08201|NIRB_ECOLI NITRITE REDUCTASE [NAD(P)H] LARGE SUBUNIT >... 187 3e-46
dbj|BAA74793.1| (AB017192) nitrate reductase NADH oxydase subuni... 186 5e-46
gb|AAC78819.1| (AF060810) NADH oxidase [Serpulina intermedia] 185 6e-46
sp|P42435|NASD_BACSU NITRITE REDUCTASE [NAD(P)H] >gi|2127153|pir... 185 8e-46
gb|AAC78813.1| (AF060804) NADH oxidase [Brachyspira innocens] 185 8e-46
gb|AAC78815.1| (AF060806) NADH oxidase [Brachyspira pilosicoli] 185 8e-46
gb|AAC78817.1| (AF060808) NADH oxidase [Brachyspira pilosicoli] 185 8e-46
gb|AAC78825.1| (AF060816) NADH oxidase [Brachyspira aalborgi] 185 1e-45
pir||S10791 nitrite reductase nirB - Escherichia coli 184 2e-45
gb|AAC78816.1| (AF060807) NADH oxidase [Brachyspira pilosicoli] 183 3e-45
pir||JC4541 NADH oxidase (H2O-forming) (EC 1.6.-.-) - Streptococ... 181 1e-44
sp|P42433|NASB_BACSU ASSIMILATORY NITRATE REDUCTASE ELECTRON TRA... 180 2e-44
pir||S04349 nitrate reductase (NADH) (EC 1.6.6.1) - Escherichia ... 180 4e-44
gb|AAK41472.1| Toluene 1,2-dioxygenase system ferredoxin--NAD(+)... 179 5e-44
pir||F71265 probable NADH oxidase - syphilis spirochete >gi|3323... 179 6e-44
gb|AAC26485.2| (AF014458) NADH oxidase [Streptococcus pneumoniae] 178 1e-43
pir||C83424 assimilatory nitrite reductase large subunit PA1781 ... 178 1e-43
gb|AAB97073.1| (AF041467) coenzyme A disulfide reductase [Staphy... 171 1e-41
emb|CAB69774.1| (AL137187) putative nitrite reductase [Streptomy... 163 3e-39
emb|CAB69775.1| (AL137187) putative nitrite reductase large subu... 160 3e-38
emb|CAB69078.1| (AJ233397) rubredoxin reductase [Pseudomonas put... 160 3e-38
sp|P75389|NAOX_MYCPN PROBABLE NADH OXIDASE (NOXASE) >gi|2146473|... 159 6e-38
emb|CAA86926.1| (Z46863) rubredoxin reductase [Acinetobacter sp.... 157 3e-37
sp|P43494|THCD_RHOER RHODOCOXIN REDUCTASE >gi|576673|gb|AAC45752... 156 4e-37
pdb|1NHR| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant With Leu... 156 5e-37
sp|P37062|NAPE_ENTFA NADH PEROXIDASE (NPXASE) >gi|97914|pir||S18... 155 7e-37
sp|P17052|RURE_PSEOL RUBREDOXIN-NAD(+) REDUCTASE >gi|77723|pir||... 155 7e-37
pdb|1NHS| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant With Ser... 155 1e-36
emb|CAC04223.1| (AL391515) putative ferredoxin reductase [Strept... 155 1e-36
pdb|1NHP| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant With Cys... 152 8e-36
pdb|1NHQ| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant With Cys... 152 1e-35
pir||C65051 rubredoxin--NAD+ reductase (EC 1.18.1.1) - Escherich... 151 1e-35
pdb|1JOA| Nadh Peroxidase With Cysteine-Sulfenic Acid 151 1e-35
pir||A49847 nitrite reductase (NADH) (EC 1.6.6.4) nasB - Klebsie... 150 3e-35
sp|P37596|YGBD_ECOLI HYPOTHETICAL 41.4 KD PROTEIN IN SRLQ-HYPF I... 150 3e-35
sp|Q06458|NIRB_KLEPN NITRITE REDUCTASE [NAD(P)H] LARGE SUBUNIT >... 150 4e-35
pir||E70667 hypothetical protein Rv1869c - Mycobacterium tubercu... 146 3e-34
sp|Q49408|NAOX_MYCGE PROBABLE NADH OXIDASE (NOXASE) >gi|1361730|... 145 1e-33
dbj|BAA06871.1| (D32142) biphenyl dioxygenase [Rhodococcus sp.] 142 9e-33
sp|P42454|RURE_ACICA RUBREDOXIN-NAD(+) REDUCTASE >gi|2120863|pir... 142 9e-33
gb|AAB08028.1| (U24277) isopropylbenzene 2,3-dioxygenase [Rhodoc... 140 3e-32
pir||G82976 probable rubredoxin reductase PA5349 [imported] - Ps... 139 7e-32
emb|CAA05635.1| (AJ002606) redA2 [Sphingomonas sp.] 138 1e-31
gb|AAD53005.1|AF076471_3 (AF076471) MocF [Sinorhizobium meliloti] 138 2e-31
sp|Q07946|BEDA_PSEPU BENZENE 1,2-DIOXYGENASE SYSTEM FERREDOXIN--... 136 4e-31
emb|CAA08856.1| (AJ009826) nitrite reductase (NADPH) [Phaeosphae... 136 4e-31
emb|CAA75809.1| (Y15883) rubredoxin reductase [Acinetobacter cal... 136 4e-31
pir||H70939 probable nirB protein - Mycobacterium tuberculosis (... 136 5e-31
gb|AAC31188.1| (AF076240) putative ferredoxin reductase MocF [Rh... 136 5e-31
gb|AAF04734.1| (AF101442) NADH oxidase [Streptococcus pyogenes] 136 6e-31
gb|AAC43635.1| (U15298) chlorobenzene dioxygenase, NADH-ferredox... 133 4e-30
gb|AAD45419.1| (U65001) naphthalenesulfonate dioxygenase reducta... 132 7e-30
pir||I40794 dihydrolipoamide dehydrogenase (EC 1.8.1.4) [validat... 132 1e-29
gi|10956962 ferredoxin reductase subunit aromatic oxygenase [Sph... 131 1e-29
pir||S70585 nitrite reductase (NADH) (EC 1.6.6.4) - Aspergillus ... 130 3e-29
sp|P13452|TODA_PSEPU TOLUENE 1,2-DIOXYGENASE SYSTEM FERREDOXIN--... 129 5e-29
pir||C70640 hypothetical protein Rv0688 - Mycobacterium tubercul... 129 5e-29
gb|AAC46393.1| (U78099) TecA4 [Burkholderia sp. PS12] 129 5e-29
emb|CAA06973.1| (AJ006307) reductase [Ralstonia sp.] 129 6e-29
pir||S51760 ferredoxin reductase BPH - Rhodococcus globerulus >g... 128 1e-28
emb|CAB51550.1| (AJ244019) ORF1 [Streptomyces coelicolor A3(2)] ... 127 2e-28
gb|AAF28060.1|AF123281_2 (AF123281) nitrite reductase [Pichia an... 127 3e-28
pir||A55581 nasC protein - Klebsiella pneumoniae >gi|473440|gb|A... 126 4e-28
sp|P22944|NIR_EMENI NITRITE REDUCTASE [NAD(P)H] >gi|83710|pir||J... 125 7e-28
pir||PS0299 nitrite reductase (NADH) (EC 1.6.6.4), short form - ... 125 7e-28
dbj|BAA84715.1| (AB017795) ferredoxin reductase [Nocardioides sp... 125 7e-28
gb|AAC03439.1| (AF006691) isopropylbenzene dioxygenase, ferredox... 125 9e-28
sp|P33009|TERA_PSESP TERPREDOXIN REDUCTASE >gi|285441|pir||D4297... 124 2e-27
emb|CAB99199.1| (AJ293587) alkylbenzene dioxygenase, ferredoxin ... 123 3e-27
dbj|BAA04112.2| (D16831) ferredoxin reductase [Pseudomonas sp. K... 123 4e-27
sp|P16640|CAMA_PSEPU PUTIDAREDOXIN REDUCTASE >gi|77767|pir||JX00... 122 6e-27
pir||T43160 nitrite reductase (EC 1.7.99.3) - yeast (Pichia angu... 121 1e-26
pir||T43155 nitrite reductase (EC 1.7.99.3) - yeast (Pichia angu... 121 1e-26
emb|CAB61699.1| (AL133219) putative oxidoreductase. [Streptomyce... 120 2e-26
sp|P08087|BNZD_PSEPU BENZENE 1,2-DIOXYGENASE SYSTEM FERREDOXIN--... 120 4e-26
sp|Q04829|DLDH_HALVO DIHYDROLIPOAMIDE DEHYDROGENASE >gi|1076150|... 120 4e-26
sp|P38681|NIR_NEUCR NITRITE REDUCTASE [NAD(P)H] >gi|542387|pir||... 119 5e-26
sp|P37337|BPHG_BURCE BIPHENYL DIOXYGENASE SYSTEM FERREDOXIN--NAD... 118 9e-26
gb|AAB41508.1| (U29532) MopA [Burkholderia cepacia] 118 9e-26
gb|AAC38619.1| (AF060489) initial dioxygenase reductase subunit ... 118 9e-26
pir||JW0101 azaarene carbazole catabolism related protein carAd ... 118 9e-26
pir||F41858 biphenyl dioxygenase (EC 1.14.-.-) ferredoxin reduct... 118 1e-25
sp|P57303|DLDH_BUCAI DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONEN... 118 1e-25
sp|P21880|DLD1_BACSU DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONEN... 118 2e-25
gb|AAD22551.1|AF112870_3 (AF112870) nitrate reductase [Pseudomon... 117 3e-25
dbj|BAB06371.1| (AP001516) pyruvate dehydrogenase E3 (dihydrolip... 116 5e-25
emb|CAB93969.1| (AJ251217) ferredoxin reductase [Pseudomonas sp.... 116 6e-25
sp|P77650|HCAD_ECOLI 3-PHENYLPROPIONATE DIOXYGENASE FERREDOXIN--... 115 8e-25
emb|CAC12462.1| (AL445067) mercuric reductase related protein [T... 115 1e-24
gb|AAG20022.1| (AE005082) NADH oxidase; NoxA [Halobacterium sp. ... 113 4e-24
sp|P11959|DLD1_BACST DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONEN... 113 5e-24
pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed Wit... 113 5e-24
gb|AAB36670.1| (U53507) isopropylbenzene-2,3-dioxygenase [Pseudo... 112 9e-24
dbj|BAA07078.1| (D37828) ferredoxin reductase of cumene dioxygen... 111 2e-23
gb|AAA63016.1| (U15183) lipoamide dehydrogenase [Mycobacterium l... 110 4e-23
gb|AAG20347.1| (AE005108) dihydrolipoamide dehydrogenase; LpdA [... 110 4e-23
sp|O34324|DLD3_BACSU DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONEN... 109 6e-23
gb|AAB62284.1| (U24215) p-cumate dioxygenase ferredoxin reductas... 109 8e-23
pir||A72548 probable lipoamide dehydrogenase component (E3) of p... 108 1e-22
sp|P43784|DLDH_HAEIN DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONEN... 108 2e-22
sp|Q59822|DLDH_STAAU DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONEN... 107 2e-22
pir||E72383 dihydrolipoamide dehydrogenase - Thermotoga maritima... 107 3e-22
pir||G71641 dihydrolipoamide dehydrogenase (pdhD) RP805 - Ricket... 106 4e-22
pir||T47545 monodehydroascorbate reductase (NADH)-like protein -... 104 2e-21
sp|O50286|DLDH_VIBPA DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONEN... 104 3e-21
pir||B82079 pyruvate dehydrogenase, E3 component, lipoamide dehy... 104 3e-21
pir||T08854 ferric leghemoglobin reductase - soybean >gi|546360|... 103 3e-21
pir||A42494 dihydrolipoamide dehydrogenase (EC 1.8.1.4) - garden... 102 6e-21
emb|CAA44729.1| (X62995) lipoamide dehydrogenase [Pisum sativum]... 102 6e-21
pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine De... 102 6e-21
pir||T06407 monodehydroascorbate reductase (NADH) (EC 1.6.5.4), ... 102 1e-20
sp|P31023|DLDH_PEA DIHYDROLIPOAMIDE DEHYDROGENASE, MITOCHONDRIAL... 101 1e-20
sp|O50311|DLDH_CHLVI DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONEN... 101 1e-20
gb|AAF49294.1| (AE003522) CG7430 gene product [Drosophila melano... 101 1e-20
sp|P09063|DLD1_PSEPU DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONEN... 101 2e-20
pdb|1LVL| Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4) Complex... 101 2e-20
pir||A55333 monodehydroascorbate reductase (NADH) (EC 1.6.5.4) -... 101 2e-20
gb|AAD26637.1|AF111947_1 (AF111947) cytochrome P-450 reductase h... 101 2e-20
dbj|BAB04498.1| (AP001509) dihydrolipoamide dehydrogenase [Bacil... 101 2e-20
sp|P95596|DLDH_RHOCA DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONEN... 100 3e-20
pir||B70828 hypothetical protein Rv0462 - Mycobacterium tubercul... 100 3e-20
pir||T06332 ferric leghemoglobin reductase isoenzyme 2 precursor... 100 3e-20
pir||F83365 lipoamide dehydrogenase-Val PA2250 [imported] - Pseu... 100 3e-20
gb|AAG17888.1| (AF295339) dihydrolipoamide dehydrogenase precurs... 100 3e-20
sp|P09623|DLDH_PIG DIHYDROLIPOAMIDE DEHYDROGENASE, MITOCHONDRIAL... 100 4e-20
pir||JU0182 monodehydroascorbate reductase (NADH) (EC 1.6.5.4) -... 100 4e-20
pir||B71705 dihydrolipoamide dehydrogenase precursor (pdhD) RP46... 100 5e-20
sp|P49819|DLDH_CANFA DIHYDROLIPOAMIDE DEHYDROGENASE, MITOCHONDRI... 99 9e-20
gb|AAD53185.1|AF181096_1 (AF181096) ferric leghemoglobin reducta... 99 9e-20
pir||T48390 monodehydroascorbate reductase (NADH)-like protein -... 99 9e-20
sp|P00391|DLDH_ECOLI DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONEN... 99 1e-19
emb|CAA24742.1| (V01498) coding sequence of gene lpd [Escherichi... 99 1e-19
pir||T36209 probable pyridine nucleotide-disulfide oxidoreductas... 98 2e-19
gi|4557525 dihydrolipoamide dehydrogenase precursor; E3 componen... 98 3e-19
gb|AAA35764.1| (J03620) dihydrolipoamide dehydrogenase precursor... 98 3e-19
sp|P18925|DLDH_AZOVI DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONEN... 97 4e-19
pdb|3LAD|A Chain A, Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4)... 97 4e-19
emb|CAA11554.1| (AJ223804) 2-oxoglutarate dehydrogenase, E3 subu... 97 4e-19
gb|AAF34796.1|AF228640_1 (AF228640) lipoamide dehydrogenase prec... 97 4e-19
pir||A82753 dihydrolipoamide dehydrogenase XF0868 [imported] - X... 97 4e-19
gb|AAB01381.1| (L13761) dihydrolipoamide dehydrogenase [Homo sap... 96 6e-19
sp|P08663|MERA_STAAU MERCURIC REDUCTASE (HG(II) REDUCTASE) >gi|7... 96 8e-19
gi|6681189 dihydrolipoamide dehydrogenase [Mus musculus] >gi|601... 96 8e-19
pir||C59237 pyruvate dehydrogenase (EC 1.2.-.-) dihydrolipoyl tr... 96 1e-18
gb|AAF34795.1|AF228639_1 (AF228639) lipoamide dehydrogenase prec... 96 1e-18
gb|AAF79529.1|AC023673_17 (AC023673) F21D18.28 [Arabidopsis thal... 96 1e-18
gb|AAG21579.1|AC051631_2 (AC051631) lipoamide dehydrogenase, put... 96 1e-18
gb|AAF04429.1|AC010927_22 (AC010927) putative monodehydroascorba... 95 1e-18
pir||F36953 dihydrolipoamide dehydrogenase (EC 1.8.1.4) - Peloba... 95 2e-18
dbj|BAB06483.1| (AP001516) dihydrolipoamide dehydrogenase [Bacil... 95 2e-18
pir||D55514 dihydrolipoamide dehydrogenase (EC 1.8.1.4) [validat... 94 2e-18
sp|P31052|DLD2_PSEPU DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONEN... 94 2e-18
gb|AAD30450.1|AF121894_1 (AF121894) lipoamide dehydrogenase [Asc... 94 2e-18
gi|6321091 dihydrolipoamide dehydrogenase precursor (mature prot... 93 5e-18
pir||E75262 2-oxo acid dehydrogenase, lipoamide dehydrogenase E3... 92 9e-18
gb|AAF37698.1|AF228637_1 (AF228637) lipoamide dehydrogenase [Ara... 92 9e-18
gb|AAC44345.1| (U62057) dihydrolipoamide dehydrogenase [Mycoplas... 92 1e-17
dbj|BAA77214.1| (D85764) cytosolic monodehydroascorbate reductas... 90 3e-17
sp|P54533|DLD2_BACSU DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONEN... 90 4e-17
gb|AAF37699.1|AF228638_1 (AF228638) lipoamide dehydrogenase [Ara... 90 4e-17
emb|CAA54878.1| (X77920) outer membrane protein p64k or PM-6 [Ne... 89 1e-16
sp|P14218|DLDH_PSEFL DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONEN... 87 5e-16
pir||A45796 dihydrolipoamide dehydrogenase (EC 1.8.1.4) - Pseudo... 87 5e-16
pdb|1LPF|A Chain A, Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4)... 87 5e-16
pdb|1OJT| Structure Of Dihydrolipoamide Dehydrogenase 86 7e-16
pdb|1BHY| Low Temperature Middle Resolution Structure Of P64k ... 86 7e-16
gb|AAD48975.1|AF162444_7 (AF162444) contains similarity to Pfam ... 86 7e-16
sp|O00087|DLDH_SCHPO DIHYDROLIPOAMIDE DEHYDROGENASE, MITOCHONDRI... 85 1e-15
dbj|BAA82115.1| (AB022919) PsbAa [Rhodopseudomonas palustris] 85 2e-15
emb|CAC14872.1| (AJ272500) apoptosis inducing factor [Dictyostel... 85 2e-15
emb|CAA61894.1| (X89747) outer membrane protein P64k or PM-6 [Ne... 83 4e-15
emb|CAA72132.1| (Y11262) dihydrolipoamide dehydrogenase [Trypano... 83 4e-15
pir||S42920 dihydrolipoamide dehydrogenase (EC 1.8.1.4) NMB1344 ... 83 4e-15
emb|CAC11354.1| (AL445063) dihydrolipoamide dehydrogenase compon... 83 4e-15
sp|P90597|DLDH_TRYCR DIHYDROLIPOAMIDE DEHYDROGENASE >gi|1841947|... 83 6e-15
pir||T05157 NADH dehydrogenase (ubiquinone) chain NDI1 homolog F... 83 7e-15
pir||G81847 dihydrolipoamide dehydrogenase (EC 1.8.1.4) NMA1556 ... 83 7e-15
pir||JC4793 dihydrolipoamide dehydrogenase (EC 1.8.1.4) - Klebsi... 82 1e-14
pir||JC4089 3alpha,7alpha,12alpha-trihydroxycholestan-26-al 26-o... 82 1e-14
emb|CAA59171.1| (X84696) outer mambrane protein P64k or PM-6 [Ne... 82 1e-14
emb|CAA72131.1| (Y11261) dihydrolipoamide dehydrogenase [Trypano... 82 1e-14
emb|CAA57206.1| (X81450) outer membrane protein P64k or PM-6 [Ne... 82 2e-14
emb|CAB65609.1| (AL136078) dihydrolipoamide dehydrogenase, mitoc... 82 2e-14
emb|CAA61895.1| (X89748) outer membrane protein P64k or PM-6 [Ne... 81 2e-14
pir||D82668 dihydrolipoamide dehydrogenase XF1548 [imported] - X... 81 2e-14
gb|AAD56918.1|AF180145_10 (AF180145) NADH dehydrogenase [Zymomon... 80 4e-14
sp|P77212|YKGC_ECOLI PROBABLE PYRIDINE NUCLEOTIDE-DISULFIDE OXID... 80 6e-14
emb|CAA62435.1| (X90938) outer membrane protein P64k or PM-6 [Ne... 79 8e-14
gb|AAB09032.1| (U51329) nitrite reductase [Aspergillus fumigatus] 78 2e-13
pir||T34726 probable dehydrogenase - Streptomyces coelicolor >gi... 78 2e-13
pir||B81882 probable dihydrolipoamide dehydrogenase (EC 1.8.1.4)... 76 6e-13
pir||A39406 dihydrolipoamide dehydrogenase (EC 1.8.1.4) LPD-glc ... 76 7e-13
pir||D81137 2-oxoglutarate dehydrogenase, E3 component, lipoamid... 76 7e-13
pir||D71076 probable glutamate synthase small chain - Pyrococcus... 76 1e-12
emb|CAA73495.1| (Y13052) ORF454 [Staphylococcus sciuri] 75 1e-12
gb|AAK43064.1| NADH dehydrogenase [Sulfolobus solfataricus] 75 2e-12
sp|P00393|DHNA_ECOLI NADH DEHYDROGENASE >gi|66211|pir||DEECR NAD... 74 3e-12
dbj|BAB07134.1| (AP001518) NADH dehydrogenase [Bacillus halodurans] 72 1e-11
pir||B75024 glutamate synthase small chain. PAB1214 - Pyrococcus... 71 2e-11
pir||F83079 NADH dehydrogenase PA4538 [imported] - Pseudomonas a... 71 2e-11
pir||D71200 probable glutamate synthase small chain - Pyrococcus... 70 6e-11
>pir||D75107 NADH oxidase (noxa-2) PAB1931 - Pyrococcus abyssi (strain Orsay)
>gi|5458084|emb|CAB49573.1| (AJ248285) NADH oxidase
(noxA-2) [Pyrococcus abyssi]
Length = 440
Score = 862 bits (2204), Expect = 0.0
Identities = 440/440 (100%), Positives = 440/440 (100%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
MRVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV
Sbjct: 1 MRVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
Query: 61 FPNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGEVPYDKLVLATGSKAFIPPIKGVENE 120
FPNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGEVPYDKLVLATGSKAFIPPIKGVENE
Sbjct: 61 FPNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGEVPYDKLVLATGSKAFIPPIKGVENE 120
Query: 121 GVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLP 180
GVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLP
Sbjct: 121 GVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLP 180
Query: 181 TMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKIGDETVEADLVLVATGVRAN 240
TMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKIGDETVEADLVLVATGVRAN
Sbjct: 181 TMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKIGDETVEADLVLVATGVRAN 240
Query: 241 VDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKV 300
VDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKV
Sbjct: 241 VDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKV 300
Query: 301 AAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYP 360
AAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYP
Sbjct: 301 AAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYP 360
Query: 361 GGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYLETAYAPPI 420
GGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYLETAYAPPI
Sbjct: 361 GGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYLETAYAPPI 420
Query: 421 SPTIDPITVAADMALRKMKR 440
SPTIDPITVAADMALRKMKR
Sbjct: 421 SPTIDPITVAADMALRKMKR 440
>pir||A71027 probable NADH oxidase - Pyrococcus horikoshii
>gi|3257934|dbj|BAA30617.1| (AP000006) 440aa long
hypothetical NADH oxidase [Pyrococcus horikoshii]
Length = 440
Score = 803 bits (2051), Expect = 0.0
Identities = 401/439 (91%), Positives = 427/439 (96%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
M++VVIGSGTAGSNFALF+RKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV
Sbjct: 1 MKIVVIGSGTAGSNFALFMRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
Query: 61 FPNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGEVPYDKLVLATGSKAFIPPIKGVENE 120
FPNEFYEKQ+IKMMLGVEAKKIDRERKV+ITDKGEVPYDKLVLATGS+AFIPPIKGVENE
Sbjct: 61 FPNEFYEKQRIKMMLGVEAKKIDRERKVIITDKGEVPYDKLVLATGSRAFIPPIKGVENE 120
Query: 121 GVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLP 180
GVFTLKSLDDVRRIKEYI KR PKK VVIGAGLIGLEGAEAFAK+GM+VLVVELLEHLLP
Sbjct: 121 GVFTLKSLDDVRRIKEYISKRKPKKVVVIGAGLIGLEGAEAFAKIGMDVLVVELLEHLLP 180
Query: 181 TMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKIGDETVEADLVLVATGVRAN 240
TMLDKDMA IVQ+ ME+HGVKF+FGVGVSEIIGNPV+ VKIG+E+VEADLVLVATGVRAN
Sbjct: 181 TMLDKDMAKIVQEEMEKHGVKFKFGVGVSEIIGNPVKEVKIGEESVEADLVLVATGVRAN 240
Query: 241 VDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKV 300
VDLAKDAGLEV+RGIVVNEYLQTSDPDIYAIGDCAEV DAVTGKRTLSQLGTSAVRMAKV
Sbjct: 241 VDLAKDAGLEVSRGIVVNEYLQTSDPDIYAIGDCAEVFDAVTGKRTLSQLGTSAVRMAKV 300
Query: 301 AAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYP 360
AAE+IAGK VKFRPVFNTAITELFDLEIGTFG+TEERAK+EGI+VV+GKF+GSTKPEYYP
Sbjct: 301 AAENIAGKKVKFRPVFNTAITELFDLEIGTFGITEERAKKEGIEVVIGKFKGSTKPEYYP 360
Query: 361 GGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYLETAYAPPI 420
GGKPITVKLIFRKE+ RLIGAQIVGGERVWGRIMTLSALAQ GA VED+AYLET+YAPPI
Sbjct: 361 GGKPITVKLIFRKEDKRLIGAQIVGGERVWGRIMTLSALAQKGATVEDVAYLETSYAPPI 420
Query: 421 SPTIDPITVAADMALRKMK 439
SPTIDPITVAA+MA+RK K
Sbjct: 421 SPTIDPITVAAEMAMRKFK 439
>pir||A69047 NADH oxidase - Methanobacterium thermoautotrophicum (strain Delta
H) >gi|2622461|gb|AAB85831.1| (AE000898) NADH oxidase
[Methanobacterium thermoautotrophicum]
Length = 450
Score = 383 bits (973), Expect = e-105
Identities = 210/447 (46%), Positives = 295/447 (65%), Gaps = 11/447 (2%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
MRVV++G G G + A +RK D+ A+I VI ++ + YSPCA+P+V+ G +E +D+++
Sbjct: 1 MRVVIVGGGAGGLSTASNIRKHDKDADIKVITRDKHVAYSPCAIPYVMCGEVECFDDIVM 60
Query: 61 FPNEFYEKQKIKMMLGVEAKKIDRERKVVITDKG-----EVPYDKLVLATGSKAFIPPIK 115
E Y ++ I ++ E + ID ++K V T +G E+PYD LVLATG FIPP++
Sbjct: 61 HRPEDYRERNIDILTETEVEAIDPQKKTV-TYRGKDGLREIPYDVLVLATGGSPFIPPVE 119
Query: 116 GVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELL 175
G + EGVFT+++L D RI E+ K K+AVV+GAGLIGLE A ++G+EV V E+L
Sbjct: 120 GTDLEGVFTIRTLTDGERITEWASKS--KRAVVVGAGLIGLEIAYGLLRMGLEVTVTEML 177
Query: 176 EHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGDETVEADLVLVA 234
++P LD DMA+IVQ +EE G++ G + I+G+ VE V +GDE +EADLV++A
Sbjct: 178 PQIVPRSLDPDMAAIVQGYLEEKGIRVILGKALDRIVGDERVEGVVVGDECLEADLVVLA 237
Query: 235 TGVRANVDLAKDAGLEVNRGIV-VNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTS 293
TGVR LA+ AG E+ + V VN+ +QTS PDIYA+GDC EV DAVTG RT S LG++
Sbjct: 238 TGVRPETKLARMAGCEIGQWAVKVNDRMQTSVPDIYAVGDCVEVYDAVTGFRTQSPLGST 297
Query: 294 AVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGS 353
AVR A+VAA++I G D +FRPV N ++++ +LE G G+TE A + GI VV GK R
Sbjct: 298 AVRQARVAAKNIVGMDARFRPVLNAMVSKIGELEFGAVGLTEVMALQNGIKVVSGKKRAL 357
Query: 354 TKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYLE 413
TK YYPG + I VK+I GR+IG Q+V ERV R+ T+S G +++ E
Sbjct: 358 TKARYYPGAERIDVKMIC-DLRGRIIGCQMVAKERVAERVDTMSLAISQGLTCSELSETE 416
Query: 414 TAYAPPISPTIDPITVAADMALRKMKR 440
+YAPP+S IDPI +AA+ A K+KR
Sbjct: 417 FSYAPPVSMVIDPIILAAEDACEKLKR 443
>sp|Q58065|NAOX_METJA PUTATIVE NADH OXIDASE (NOXASE) >gi|2129157|pir||A64381 NADH oxidase
- Methanococcus jannaschii >gi|1591361|gb|AAB98641.1|
(U67512) NADH oxidase (nox) [Methanococcus jannaschii]
Length = 463
Score = 373 bits (947), Expect = e-102
Identities = 199/446 (44%), Positives = 296/446 (65%), Gaps = 9/446 (2%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
MR ++IGSG AG A +RK ++ EI+VI KE + YSPCA+P+VI G I+ +D+I+
Sbjct: 16 MRAIIIGSGAAGLTTASTIRKYNKDMEIVVITKEKEIAYSPCAIPYVIEGAIKSFDDIIM 75
Query: 61 FPNEFYEKQK-IKMMLGVEAKKID-RERKVVITDKG----EVPYDKLVLATGSKAFIPPI 114
E Y++++ I ++ +D + K+ DK E+ YD LVLATG++ FIPPI
Sbjct: 76 HTPEDYKRERNIDILTETTVIDVDSKNNKIKCVDKDGNEFEMNYDYLVLATGAEPFIPPI 135
Query: 115 KGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVEL 174
+G + +GVF +++++D R I +YI + KK V+GAG IGLE A G++VLVVE+
Sbjct: 136 EGKDLDGVFKVRTIEDGRAILKYIEENGCKKVAVVGAGAIGLEMAYGLKCRGLDVLVVEM 195
Query: 175 LEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGDETVEADLVLV 233
+LP LD DMA IVQK +E+ G+K + +I+G VEAV + + + D+V++
Sbjct: 196 APQVLPRFLDPDMAEIVQKYLEKEGIKVMLSKPLEKIVGKEKVEAVYVDGKLYDVDMVIM 255
Query: 234 ATGVRANVDLAKDAGLEVNR-GIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGT 292
ATGVR N++LAK AG ++ + I VNE +QTS P+IYA+GDC EVID +TG++TLS GT
Sbjct: 256 ATGVRPNIELAKKAGCKIGKFAIEVNEKMQTSIPNIYAVGDCVEVIDFITGEKTLSPFGT 315
Query: 293 SAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRG 352
+AVR KVA ++IAG + KF PV N+A++++ DLEIG G+T A + I +V+G+ +
Sbjct: 316 AAVRQGKVAGKNIAGVEAKFYPVLNSAVSKIGDLEIGGTGLTAFSANLKRIPIVIGRAKA 375
Query: 353 STKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYL 412
T+ YYPGGK I +K+IF E+G+++G QIVGGERV RI +S E++A +
Sbjct: 376 LTRARYYPGGKEIEIKMIF-NEDGKVVGCQIVGGERVAERIDAMSIAIFKKVSAEELANM 434
Query: 413 ETAYAPPISPTIDPITVAADMALRKM 438
E YAPP+S +P+++AA+ AL+K+
Sbjct: 435 EFCYAPPVSMVHEPLSLAAEDALKKL 460
>gi|11498012 NADH oxidase (noxA-3) [Archaeoglobus fulgidus]
>gi|7483900|pir||H69299 NADH oxidase (noxA-3) homolog -
Archaeoglobus fulgidus >gi|2650233|gb|AAB90837.1|
(AE001077) NADH oxidase (noxA-3) [Archaeoglobus
fulgidus]
Length = 551
Score = 284 bits (719), Expect = 1e-75
Identities = 175/452 (38%), Positives = 254/452 (55%), Gaps = 16/452 (3%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDV-- 58
M VVVIG G AG A +R+ D A I V+ + C LP+ + G + + +++
Sbjct: 1 MNVVVIGGGAAGLKAASRIRRKDGDASITVVEAGKYVSLGRCGLPYYVGGLVHEVDNLRE 60
Query: 59 ----IVFPNEFYEKQK-IKMMLGVEAKKIDRERKVV-ITDKG---EVPYDKLVLATGSKA 109
V +++K K I ++ A +IDR RK V I G E+ YD LV+ATG++
Sbjct: 61 TTYGAVRDEAYFKKLKNIDVLTETVATEIDRSRKTVKIVRNGSEDELNYDYLVIATGARP 120
Query: 110 FIPPIKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEV 169
PPI+G+E EGV TL S ++ +I E + + +KAVVIGAG IGLE AEA L MEV
Sbjct: 121 AKPPIEGIEAEGVVTLTSAEEAEKIIE-MWEEGAEKAVVIGAGFIGLESAEALKNLDMEV 179
Query: 170 LVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIG--NPVEAVKIGDETVE 227
V+E+++ + P MLD++MA +V+ ++ E GV V +I+ + V AV +
Sbjct: 180 TVIEMMDRVAPAMLDREMAVLVENHLREKGVNVVTSTRVEKIVSQDDKVRAVIANGKEYP 239
Query: 228 ADLVLVATGVRANVDLAKDAGLEVNR--GIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKR 285
AD+V+VATG++ N +LA+ AGL++ I V+EY++TSD IYA GDC E VTGK+
Sbjct: 240 ADVVVVATGIKPNSELAEKAGLKIGETGAIWVDEYMRTSDESIYAGGDCVETTCLVTGKK 299
Query: 286 TLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDV 345
++ G A + +V E+I G F V TAI ++FD + G+ E+ AK G+D
Sbjct: 300 IIAPFGDVANKQGRVIGENITGGRAVFPGVIRTAIFKVFDFTAASAGVNEQMAKEAGLDY 359
Query: 346 VVGKFRGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAK 405
+ YYP I +KLI K R+IGAQ VG V RI LS Q G
Sbjct: 360 FTVIAPSPDRAHYYPQANYIRLKLIVEKGSWRVIGAQGVGMGEVAKRIDVLSTAIQAGMT 419
Query: 406 VEDIAYLETAYAPPISPTIDPITVAADMALRK 437
++ +A L+ AYAPP SP +DP+ A++A+ K
Sbjct: 420 IDQLANLDLAYAPPYSPALDPVITIANVAMNK 451
>pir||H71171 probable NADH oxidase - Pyrococcus horikoshii
>gi|3256978|dbj|BAA29661.1| (AP000002) 445aa long
hypothetical NADH oxidase [Pyrococcus horikoshii]
Length = 445
Score = 264 bits (667), Expect = 2e-69
Identities = 157/436 (36%), Positives = 245/436 (56%), Gaps = 9/436 (2%)
Query: 2 RVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVF 61
+VV+IG G AG + A +++L + ++ V + ++PC +P+V+ G + P+ ++ +
Sbjct: 8 KVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEG-LSTPDKLMYY 66
Query: 62 PNE-FYEKQKIKMMLGVEAKKIDRERKVVITDKGEVPY--DKLVLATGSKAFIPPIKGVE 118
P E F +K+ I + L E ++D V + GE Y D LV A G+ +P I+GV
Sbjct: 67 PPEVFIKKRGIDLHLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQVPAIEGVN 126
Query: 119 NEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHL 178
+GVFT D I+EY+ K + V+IG G IG+E AEAFA G V ++ E +
Sbjct: 127 LKGVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERV 186
Query: 179 LPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGDETVEADLVLVATGV 237
L DK++ I+++ +++H V R +I G VE V +A+LV++ATG+
Sbjct: 187 LRRSFDKEVTDILEEKLKKH-VNLRLQEITMKIEGEERVEKVVTDAGEYKAELVILATGI 245
Query: 238 RANVDLAKDAGLEVNR--GIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAV 295
+ N++LAK G+ + I NE +QTS ++YA GD AE +TG+R L +
Sbjct: 246 KPNIELAKQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAETRHVITGRRVWVPLAPAGN 305
Query: 296 RMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTK 355
+M VA +IAGK++ F V TA+T+ D+EIG G+TE A +EG DV + ST+
Sbjct: 306 KMGYVAGSNIAGKELHFPGVLGTAVTKFMDVEIGKTGLTEMEALKEGYDVRTAFIKASTR 365
Query: 356 PEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYLETA 415
P YYPGG+ I +K + E RL+G Q+VG + + RI T +A+ G +D + + A
Sbjct: 366 PHYYPGGREIWLKGVVDNETNRLLGVQVVGSD-ILPRIDTAAAMLMAGFTTKDAFFTDLA 424
Query: 416 YAPPISPTIDPITVAA 431
YAPP +P DP+ V A
Sbjct: 425 YAPPFAPVWDPLIVLA 440
>pir||H75052 NADH oxidase (noxa-1) PAB0936 - Pyrococcus abyssi (strain Orsay)
>gi|5458830|emb|CAB50317.1| (AJ248287) NADH oxidase
(noxA-1) [Pyrococcus abyssi]
Length = 446
Score = 258 bits (652), Expect = 1e-67
Identities = 156/435 (35%), Positives = 236/435 (53%), Gaps = 9/435 (2%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFP 62
VV+IG G AG + A +++L + ++ V + ++PC +P+V+ G I E ++ +P
Sbjct: 10 VVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVEG-ISPTEKLMHYP 68
Query: 63 NE-FYEKQKIKMMLGVEAKKIDRERKVVITDKGEVPY--DKLVLATGSKAFIPPIKGVEN 119
E F +K+ I + L E ++D V GE Y D LV A G+ +P I+GV+
Sbjct: 69 PEVFIKKRGIDLHLNAEVIEVDTGYVRVREKDGEKSYEWDYLVFANGASPQVPAIEGVDL 128
Query: 120 EGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLL 179
+GVFT D I+EY+ K + V++G G IGLE AEAF G V ++ E +L
Sbjct: 129 KGVFTADLPPDAVAIREYMEKNRVEDVVIVGGGYIGLEMAEAFVAQGKRVTMIVRGERIL 188
Query: 180 PTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGDETVEADLVLVATGVR 238
DK++ I+++ +++H V R V I G VE V ADLV++ATG++
Sbjct: 189 RRSFDKEVTDIIEEKLKQH-VNLRLQEIVLRIEGKDRVEKVVTDAGEYRADLVILATGIK 247
Query: 239 ANVDLAKDAGLEVNR--GIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVR 296
N++LA+ G+ + I NE +QTS ++YA GD AE +TG+R L +
Sbjct: 248 PNIELARQLGVRIGETGAIWTNEKMQTSVENVYAAGDVAETKHVITGRRVWVPLAPPGNK 307
Query: 297 MAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKP 356
M VA +IAGK++ F V T +T+ D+EIG G+TE A +EG D+ + ST+P
Sbjct: 308 MGYVAGSNIAGKEIHFPGVLGTTVTKFLDVEIGKTGLTETEALKEGYDIRTAFIKASTRP 367
Query: 357 EYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYLETAY 416
YYPGGK I +K + E RL+G Q VG E + RI +A+ +D + + AY
Sbjct: 368 HYYPGGKEIWLKGVVDNETNRLLGVQAVGAE-ILPRIDAAAAMLMANFTTKDAFFTDLAY 426
Query: 417 APPISPTIDPITVAA 431
APP +P DP+ V A
Sbjct: 427 APPFAPVWDPLVVLA 441
>gi|11498007 NADH oxidase (noxA-2) [Archaeoglobus fulgidus]
>gi|7447164|pir||C69299 NADH oxidase (noxA-2) homolog -
Archaeoglobus fulgidus >gi|2650234|gb|AAB90838.1|
(AE001077) NADH oxidase (noxA-2) [Archaeoglobus
fulgidus]
Length = 436
Score = 253 bits (639), Expect = 3e-66
Identities = 156/437 (35%), Positives = 244/437 (55%), Gaps = 12/437 (2%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
MRVVVIG G AG + A ++ L + E+ V + + ++PC +P+V+ G + P ++
Sbjct: 1 MRVVVIGGGAAGMSAASRVKALQPEWEVTVFEETNFVSHAPCGIPYVVEG-LSDPSHLMY 59
Query: 61 FPNEFY-EKQKIKMMLGVEAKKIDRERKVVITDKGEVPY--DKLVLATGSKAFIPPIKGV 117
+P EF+ EK+ I + + + + VI D E Y DKLV+ATG+ PP +G+
Sbjct: 60 YPPEFFREKRGIDLHINAKVVEAGDGFVRVIEDGQEKTYEWDKLVIATGALPKTPPFEGL 119
Query: 118 ENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEH 177
E E VFT++ ++E + K + V++GAG +G+E AEA A G +V VVE L+
Sbjct: 120 ELENVFTVRHPVQAAELREAVEKA--ENVVIVGAGYVGVEMAEAAAARGKKVTVVEFLDQ 177
Query: 178 LLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKIGDE-TVEADLVLVATG 236
LP LD+D+A +V+ +EE V R G V G+ + D+ AD+V+VATG
Sbjct: 178 PLPN-LDRDVADLVKHKLEEK-VNLRLGEKVEAFEGDGAVRKVVTDKGEYPADVVIVATG 235
Query: 237 VRANVDLAKDAGLEVNR--GIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSA 294
V+AN +A+ G ++ I + +QTS +++A GDCAE +T KR L
Sbjct: 236 VKANTAIAEQIGCKIGETGAIWTDSRMQTSVENVFAAGDCAETTHMLTKKRVWIPLAPPG 295
Query: 295 VRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGST 354
+M VA + AG +++F V T +T+ FDLEIG G+TE+ AK EG +V + T
Sbjct: 296 NKMGYVAGVNAAGGNIEFPGVLGTQLTKFFDLEIGATGLTEKAAKAEGFEVKTAVVKAKT 355
Query: 355 KPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYLET 414
+ YYPG K +K++ R++GAQ++G + V R+ +A+ Q G +D+ + +
Sbjct: 356 RVHYYPGAKDTFLKVVADASTKRILGAQVLGAD-VAMRVNVFAAMIQGGFTTKDVFFADL 414
Query: 415 AYAPPISPTIDPITVAA 431
YAPP +P DPI V+A
Sbjct: 415 GYAPPFTPIWDPIVVSA 431
>pir||B82434 probable NADH oxidase VCA0644 [imported] - Vibrio cholerae (group
O1 strain N16961) >gi|9658059|gb|AAF96545.1| (AE004394)
NADH oxidase, putative [Vibrio cholerae]
Length = 567
Score = 246 bits (622), Expect = 3e-64
Identities = 145/468 (30%), Positives = 249/468 (52%), Gaps = 31/468 (6%)
Query: 2 RVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV- 60
++V+IG G++ A R+L AEII+ + P + ++ C LP+ I G I++ ++++
Sbjct: 3 KIVIIGGVAGGASAAARARRLSEDAEIIMFERGPYVSFANCGLPYHIGGDIKERSNLLLQ 62
Query: 61 FPNEFYEKQKIKMMLGVEAKKIDRERKVV----ITDKGEVP--YDKLVLATGSKAFIPPI 114
P F + + + E +I+R K + + D+ E YD L+L+ G+ IPPI
Sbjct: 63 TPESFLARFNVDVRTMNEVLRINRAAKTITVRNLLDQSEYDENYDFLLLSPGAGPVIPPI 122
Query: 115 KGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVEL 174
G++N +L+++ D+ +I + + P+ A V+G G IGLE EAF LG++ ++E+
Sbjct: 123 PGIQNPLTHSLRNIPDMDKIIQTLQMNKPEHATVVGGGFIGLEMMEAFHHLGIKTTLIEM 182
Query: 175 LEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKIGD----------- 223
+ ++ T +D++MA + G+ R G + + P + +
Sbjct: 183 ADQVM-TPVDREMAGFAHAEIRAKGIDLRLGAALKSVEYRPAATLPSAESGESLEHKHVE 241
Query: 224 ----------ETVEADLVLVATGVRANVDLAKDAGLEVNR--GIVVNEYLQTSDPDIYAI 271
+T+ D++++A GVR LA +AGL++ GI VNE +QTSDP IYA+
Sbjct: 242 GELDLLLSNGDTLTTDILIMAIGVRPETKLAAEAGLQLGELGGIWVNEQMQTSDPAIYAV 301
Query: 272 GDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTF 331
GD E D VTGK+TL L A R ++AA+++ G++ ++ TAI ++FDL + +
Sbjct: 302 GDAVEEKDFVTGKQTLVPLAGPANRQGRMAADNMLGRNESYQGTQGTAICKIFDLAVAST 361
Query: 332 GMTEERAKREGIDVVVGKFRGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWG 391
G E++ KREGI ++ YYPG + ++ K++F + G++ GAQ VG + +
Sbjct: 362 GKNEKQLKREGIAYEKVYVHTASHASYYPGAEVVSFKMLFDPQTGKIFGAQAVGKDGIDK 421
Query: 392 RIMTLSALAQMGAKVEDIAYLETAYAPPISPTIDPITVAADMALRKMK 439
RI ++ + G VE + +LE YAPP D I AA +A +K
Sbjct: 422 RIDVMAVAQRAGMTVEQLQHLELTYAPPFGSAKDVINQAAFVATNLIK 469
>emb|CAC11966.1| (AL445065) NADH peroxidase related protein [Thermoplasma
acidophilum]
Length = 435
Score = 242 bits (611), Expect = 6e-63
Identities = 146/442 (33%), Positives = 245/442 (55%), Gaps = 12/442 (2%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
M +VVIG G AG A +++++ A + VI + Y+ C +P+ + G + K ED++
Sbjct: 1 MDIVVIGGGAAGMAAASKAKRVNKDANVTVIESGSFVSYAECGIPYFLQGIVGKAEDLLH 60
Query: 61 FP-NEFYEKQKIKMMLGVEAKKIDRERKVVITDKGE-VPYDKLVLATGSKAFIPPIKGVE 118
+P EF EK+ IK++ G KKID ++ D G V +D+L++ATGS+ IP G+
Sbjct: 61 YPLEEFTEKRGIKVITGRVVKKIDTASLSLVLDNGSAVKFDRLIIATGSRPRIPD--GIA 118
Query: 119 NEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHL 178
+ GVF L+SL+ R+KE I + +IGAG++G+E A + G V V+ + +
Sbjct: 119 S-GVFGLRSLESAIRLKEAID--GSRTITIIGAGVLGVELASTLTEAGKRVKVISKYDRV 175
Query: 179 LPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEII-GNPVEAVKIGDETVEADLVLVATGV 237
+P LD DM I+ V+ F EI G AVK + +D+V+ A G+
Sbjct: 176 MP-QLDPDMGKILNDYFSSK-VEVEFSSTPVEIKKGEDGFAVKTTVDDHVSDVVIAAVGI 233
Query: 238 RANVDLAKDAGLEVNR--GIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAV 295
N ++A DAG++V++ I+ +E+++TS P IYA GD A V + +TG+ + L A
Sbjct: 234 VPNSNIAVDAGIKVDQRGAIITDEHMETSIPGIYAAGDVATVKNIITGQDEMMPLAQIAN 293
Query: 296 RMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTK 355
+ +VA + AG +++F + + ++FD+E+G G+ E+RA GI + ++
Sbjct: 294 KAGRVAGSNAAGSEMRFPGAIGSTLVKVFDMEVGFTGLNEKRASVLGIPYGKTMIKAKSR 353
Query: 356 PEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYLETA 415
YYPG + I VK+++ + ++IG Q++G + R+ TL+ G VED+ Y +
Sbjct: 354 ANYYPGKEDIFVKILYDSRDKKIIGGQVIGKDGAAWRLNTLATAIFAGFTVEDLFYDDLG 413
Query: 416 YAPPISPTIDPITVAADMALRK 437
Y PP P DP+ VA +++R+
Sbjct: 414 YTPPFGPVWDPLVVAGSVSMRE 435
>gi|11499442 NADH oxidase (noxA-5) [Archaeoglobus fulgidus]
>gi|7447172|pir||A69482 NADH oxidase (noxA-5) homolog -
Archaeoglobus fulgidus >gi|2648692|gb|AAB89398.1|
(AE000975) NADH oxidase (noxA-5) [Archaeoglobus
fulgidus]
Length = 448
Score = 230 bits (580), Expect = 3e-59
Identities = 156/452 (34%), Positives = 252/452 (55%), Gaps = 27/452 (5%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVIS--GTIEKPEDVIV 60
V++IG G AG A +K + +I KE T PC +P++ G++E V
Sbjct: 8 VLIIGGGPAGIVTATTAKKFYPAKSVAIIKKEET-SLVPCGIPYIFKTLGSVEAD----V 62
Query: 61 FPNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGE-VPYDKLVLATGSKAFIPPIKGVEN 119
P + E I+ ++ E + +D + KVV T G+ + Y+KLV ATGS +P I+GVE
Sbjct: 63 MPTKPAENLGIEFIID-EVEDVDVKAKVVRTKGGKSISYEKLVFATGSTPVMPRIEGVEK 121
Query: 120 EGVFTL-KSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHL 178
+GVFT+ K+++++R++ E + K +K V++G G IG+E E AK G + +VE+++ L
Sbjct: 122 KGVFTVSKNIEELRKLHEAVKKA--EKVVIVGGGFIGVEVGEQIAKAGKKFTMVEMMDQL 179
Query: 179 LPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGN-PVEAVKIGD-ETVEADLVLVATG 236
LP DK+ A I ++ +++ GV+ V I GN VEAV++ D +EAD+V+++ G
Sbjct: 180 LPAAFDKEFARIAEEELKKLGVEVYLNSTVKRITGNSSVEAVELADGRKIEADVVIMSVG 239
Query: 237 VRANVDLAKDAGLEVNRG--IVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSA 294
R N++LAK AGL ++ G I +EY +TS+ D++A+GDC+E D T + + L ++A
Sbjct: 240 YRPNIELAKKAGLRISIGNRIWTDEYGRTSEKDVFAVGDCSEEKDFFTRETSRVMLASTA 299
Query: 295 VRMAKVAAEHIAG-KDVKFRP----VFNTAITELFDLEIGTFGMTEERAKREGIDVVVGK 349
A++ ++ K V+ VF+T + D+ +G G+TEE AK+EG +VV G
Sbjct: 300 TFEARIVGANLYSLKVVRVNKGTVGVFSTFVG---DVALGAAGLTEEMAKKEGFEVVAGY 356
Query: 350 FRGSTKP-EYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVED 408
+ PG VKLIF KE G ++G Q+ G V + ++ Q +
Sbjct: 357 GESLNRHLASIPGAAKTKVKLIFAKESGVILGGQVTGRYEVGEMVNQIAMAIQNNLTASE 416
Query: 409 IAYLETAYAPPI--SPTIDPITVAADMALRKM 438
I L+ P + +PT P+ +AA+ ALRKM
Sbjct: 417 IDTLQIGTHPLLTSAPTTPPVILAAEDALRKM 448
>pir||G70190 NADH oxidase, water-forming (nox) homolog - Lyme disease spirochete
>gi|2688656|gb|AAC67069.1| (AE001172) NADH oxidase,
water-forming (nox) [Borrelia burgdorferi]
Length = 444
Score = 227 bits (572), Expect = 2e-58
Identities = 127/442 (28%), Positives = 229/442 (51%), Gaps = 8/442 (1%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
M++++IG +AG++ A +L++K +I + K + + C LP+ + G + P +I
Sbjct: 2 MKIIIIGGTSAGTSAAAKANRLNKKLDITIYEKTNIVSFGTCGLPYFVGGFFDNPNTMIS 61
Query: 61 FPNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGEV------PYDKLVLATGSKAFIPPI 114
E +EK I + E K+D + ++ + YD+L++ATG+K IPPI
Sbjct: 62 RTQEEFEKTGISVKTNHEVIKVDAKNNTIVIKNQKTGTIFNNTYDQLMIATGAKPIIPPI 121
Query: 115 KGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVEL 174
+ E TLK+L+D ++IK+ + + K V+IG G IG+E EA V +++L
Sbjct: 122 NNINLENFHTLKNLEDGQKIKKLMDREEIKNIVIIGGGYIGIEMVEAAKNKRKNVRLIQL 181
Query: 175 LEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGDETVEADLVLV 233
+H+L D+++ +I+++ + + GV V +IG E V T +AD V++
Sbjct: 182 DKHILIDSFDEEIVTIMEEELTKKGVNLHTNEFVKSLIGEKKAEGVVTNKNTYQADAVIL 241
Query: 234 ATGVRANVD-LAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGT 292
ATG++ + + L N I+VNEY +TS +I++ GDCA + + V+ K L T
Sbjct: 242 ATGIKPDTEFLENQLKTTKNGAIIVNEYGETSIKNIFSAGDCATIYNIVSKKNEYIPLAT 301
Query: 293 SAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRG 352
+A ++ ++ E++AG F+ +A ++ LE G+TE+ AK+ I +
Sbjct: 302 TANKLGRIVGENLAGNHTAFKGTLGSASIKILSLEAARTGLTEKDAKKLQIKYKTIFVKD 361
Query: 353 STKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYL 412
YYPG + + +KLI+ + ++GAQ +G RI LS +++ +
Sbjct: 362 KNHTNYYPGQEDLYIKLIYEENTKIILGAQAIGKNGAVIRIHALSIAIYSKLTTKELGMM 421
Query: 413 ETAYAPPISPTIDPITVAADMA 434
+ +Y+PP S T D + +A + A
Sbjct: 422 DFSYSPPFSRTWDILNIAGNAA 443
>pir||D72383 NADH oxidase - Thermotoga maritima (strain MSB8)
>gi|4980883|gb|AAD35465.1|AE001718_2 (AE001718) NADH
oxidase [Thermotoga maritima]
Length = 443
Score = 224 bits (564), Expect = 2e-57
Identities = 155/447 (34%), Positives = 245/447 (54%), Gaps = 22/447 (4%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFP 62
VVV+G G AG A ++ +I+V+ K+ + PC +P++ T+ E+ +
Sbjct: 5 VVVVGGGPAGLVAAFTTKRFFGDKKILVV-KKTEKEMVPCGIPYIFH-TLGSVENDYMGI 62
Query: 63 NEFYEKQKIKMMLGVEAKKIDRERKVVITDKGEVPYDKLVLATGSKAFIPPIKGVENEGV 122
+ ++ I +++ E+K+ E+ YDKL++ATGS IP I GV+ +GV
Sbjct: 63 EDRFKGAGIDLLIDEVVDGNPDEKKLFTKSGKEISYDKLIIATGSSPNIPKIPGVDLKGV 122
Query: 123 FTL-KSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPT 181
FT+ K D ++ + E + N V+IG G IG+E A+ K G V +VE+++ LLP
Sbjct: 123 FTVPKEADYLKLLHEKVKDAND--VVIIGGGFIGVEVADEIKKSGKNVTLVEIMDSLLPV 180
Query: 182 MLDKDMASIVQKNMEEHGVKFRFGVGVSEIIG-NPVEAVKI-GDETVEADLVLVATGVRA 239
D D + +K +E VK G V+EI+G VE VK+ ET+ AD+V++ATG +
Sbjct: 181 SFDPDFGELARKELESDNVKVLTGRKVTEILGTEKVEGVKLDSGETIPADVVVLATGYKP 240
Query: 240 NVDLAKDAGLEVNR--GIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRM 297
N +LA+ GL+V I +EY++TS PDI+A GDC + D +TGK + L ++AV
Sbjct: 241 NSELARKLGLKVTELGFIETDEYMRTSKPDIFAAGDCVQHKDFLTGKPSRLMLASAAVFD 300
Query: 298 AKVAAEHIAGKDV--KFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTK 355
A++AA ++ G V + N T + G+ G+TE AK EG +VVVGK +
Sbjct: 301 ARIAASNLYGLKVIRTNKGSLNAYSTVIGSKAFGSVGITERIAKEEGFEVVVGK---AEA 357
Query: 356 PEYYPG----GKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALA-QMGAKVEDIA 410
P+ +PG + VKLIF ++ L+GAQ+ GG+ V G I+ L +L Q G D+
Sbjct: 358 PDRHPGKFEDTSKLVVKLIFSEDSKILLGAQVCGGKSV-GEIVNLISLGIQKGITANDLF 416
Query: 411 YLETAYAPPI--SPTIDPITVAADMAL 435
++ P + +PT+ P+ AA+M L
Sbjct: 417 TMQIGTHPLLTSAPTVYPLAKAAEMVL 443
>pir||T34719 probable flavoprotein oxidoreductase - Streptomyces coelicolor
>gi|3169053|emb|CAA19251.1| (AL023702) putative
flavoprotein oxidoreductase [Streptomyces coelicolor
A3(2)]
Length = 465
Score = 222 bits (561), Expect = 5e-57
Identities = 147/453 (32%), Positives = 232/453 (50%), Gaps = 15/453 (3%)
Query: 2 RVVVIGSGTAGSNFALFLRKLDR--KAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVI 59
R+VVIG AG + A R+L + EI+ + +S C +P+ + G + + +I
Sbjct: 12 RLVVIGGDAAGMSAASQARRLKGPDELEIVAFERGHFSSFSACGIPYWVGGDVTGRDALI 71
Query: 60 VFPNEFYEKQKIKMMLGVEAKKID------RERKVVITDKGEVPYDKLVLATGSKAFIPP 113
E + + I + + E +ID R R V + + YDKLV+ TG++ P
Sbjct: 72 ARTPEEHRARDIDLRMRTEVTEIDVAGGRVRARDVDSGARSWMSYDKLVIGTGARPVRPE 131
Query: 114 IKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVE 173
+ G++ GV +++LDD + + + + + ++AVV+GAG IG+E AEA G EV VV
Sbjct: 132 LPGIDAPGVHGMQTLDDGQALLDTLTRTRGRRAVVVGAGYIGVEMAEALINRGYEVTVVN 191
Query: 174 LLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP---VEAVKIGDETVEADL 230
+ T LD DM +V ME G+ V+ ++ V AV D AD+
Sbjct: 192 RGREPMST-LDPDMGRMVHGAMEGLGITMVNDAEVTGVLTGDDGRVRAVATEDAEFPADV 250
Query: 231 VLVATGVRANVDLAKDAGLEVNR--GIVVNEYLQT-SDPDIYAIGDCAEVIDAVTGKRTL 287
V++ GVR LA AGL + G++ + ++ +I+A GDC EV+D V+G+
Sbjct: 251 VVLGIGVRPETGLAAAAGLPLGAHGGLLTDLAMRVRGHENIWAGGDCVEVLDLVSGQERH 310
Query: 288 SQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVV 347
LGT A + +V ++ G F V TA++++ DLEI G+ E+ A R G+ V
Sbjct: 311 IPLGTHANKHGQVVGTNVGGGYATFPGVVGTAVSKVCDLEIARTGLREKDALRAGLRFVT 370
Query: 348 GKFRGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVE 407
+++ YYP P+TVK++ + GRL+G QIVG E R+ + G VE
Sbjct: 371 ATVESTSRAGYYPNASPMTVKMLAERRTGRLLGVQIVGREGAGKRVDIAAVALTAGMTVE 430
Query: 408 DIAYLETAYAPPISPTIDPITVAADMALRKMKR 440
+ L+ YAPP SP DP+ VAA A R+++R
Sbjct: 431 QMTALDLGYAPPFSPVWDPVLVAARKAAREVER 463
>dbj|BAB07495.1| (AP001519) NADH oxidase (nox) [Bacillus halodurans]
Length = 436
Score = 219 bits (553), Expect = 4e-56
Identities = 141/438 (32%), Positives = 215/438 (48%), Gaps = 6/438 (1%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
M+ V+IG AG + A+ + + + A I + Y+ C LP+V+ G I + E +I
Sbjct: 1 MKYVIIGGDAAGMSAAMEIVRNEEAANITTLEMGSIYSYAQCGLPYVVGGVIPQTEKLIA 60
Query: 61 FPNE-FYEKQKIKMMLGVEAKKIDRERKVVITDKGEVPYDKLVLATGSKAFIPPIKGVEN 119
E F K I E KID + K V E+PYDKL++ATG++ +P G
Sbjct: 61 RTIETFRNKYGIDARTNHEVTKIDPDSKHVYGANFEIPYDKLLIATGARPLVPNWPGRTL 120
Query: 120 EGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLL 179
G+ T+K++ D + + K K V++G G IGLE AE A G V +VE L
Sbjct: 121 AGIHTIKTIPDTEVLLADL-KGEIKNVVIVGGGYIGLEMAENLALTGKNVTIVEANAQLA 179
Query: 180 PTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGDETVEADLVLVATGVR 238
+ D++M I+ + E GV R V G V+AV TV A+LV++A GV
Sbjct: 180 -AIFDQEMGEIIHQEAERKGVTLRLKEEVKGFEGTDRVQAVVTSSATVPAELVIIAIGVV 238
Query: 239 ANVDLAKDAGLE--VNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVR 296
N + N + VN Y++T+ PDIYA GDCA + LGT A +
Sbjct: 239 PNTTFLEGQPFHRHENSALKVNAYMETNLPDIYAAGDCATQYHRIKKLDDYIPLGTHANK 298
Query: 297 MAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKP 356
++A ++ GK F V T+I + FDL +G G++E+ + + F G
Sbjct: 299 QGRLAGLNMVGKRRAFAGVVGTSIIKFFDLSLGRTGLSEKETRDARLPASSITFDGRDIA 358
Query: 357 EYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYLETAY 416
YYPG +P+ +KL++ E +L+G Q++G V R+ L+ +E++ L+ +Y
Sbjct: 359 GYYPGAEPLKIKLVYHSETNQLLGGQVIGTNGVAKRVDVLATALYQQLTLEELLDLDLSY 418
Query: 417 APPISPTIDPITVAADMA 434
APP + DPI AA A
Sbjct: 419 APPFNGVWDPIQQAARRA 436
>gb|AAK42445.1| NADH oxidase [Sulfolobus solfataricus]
Length = 441
Score = 218 bits (549), Expect = 1e-55
Identities = 138/438 (31%), Positives = 228/438 (51%), Gaps = 17/438 (3%)
Query: 2 RVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVF 61
R+++IG G AG A ++R+L + V + ++PC +P+ G + + +
Sbjct: 3 RLIIIGGGAAGMTAASWVRRLKPNMHVTVFESTKMVSHAPCGIPYFTEGLFDDENLFMTY 62
Query: 62 -PNEFYEKQKIKMMLGVEAKKIDRERKVVIT----DKGEVPYDKLVLATGSKAFIPPIKG 116
P F EK+KI + + +++D ++V+ +K + +D L+ +TG++ P
Sbjct: 63 TPEYFIEKRKINVKTNSKVEEVDLRSRIVVVRENQEKRKYEFDYLLFSTGAR---PKKIN 119
Query: 117 VENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLE 176
E + +F + + I++ + N + +IG G++G+E AEA G +++++
Sbjct: 120 AEGDRIFYVHHPAEASYIRQKLWSFN--RIAIIGGGILGIEMAEALRARGKKIVLIHRGR 177
Query: 177 HLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKIGDE-TVEADLVLVAT 235
+LL MLD+DM IV +E ++ + + +I V I D+ + D +VA
Sbjct: 178 YLLNKMLDEDMGKIVTDKVESE-IELKLNESLVSVIEEG--RVVITDKGKYDVDATVVAI 234
Query: 236 GVRANVDLAKDAGLEVNR--GIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTS 293
GV N+DL KD L++ + I + +++TS ++YA GD E I+ +T K
Sbjct: 235 GVEPNIDLVKDQ-LKIGQTGAIWADNHMRTSVENVYAAGDSTESINIITKKPDWVPFAPV 293
Query: 294 AVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGS 353
A +M VA +I GKDV F V T IT+ + IG G+TE AKR I V
Sbjct: 294 ANKMGFVAGNNIGGKDVTFPGVVGTMITKFEEFIIGKTGVTENEAKRYNIKTVSAIVHHK 353
Query: 354 TKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYLE 413
T+ YYPG K I VKLI + R+IGAQIVG E V GR+ ++A+ Q G ED+ ++E
Sbjct: 354 TRARYYPGSKDIIVKLIAEADTMRIIGAQIVGEEEVLGRLNMMAAVIQKGFTAEDLFFVE 413
Query: 414 TAYAPPISPTIDPITVAA 431
T Y PP++ D +T+AA
Sbjct: 414 TGYVPPVNRVWDVVTLAA 431
>gi|11497870 NADH oxidase (noxA-1) [Archaeoglobus fulgidus]
>gi|7447165|pir||F69281 NADH oxidase (noxA-1) homolog -
Archaeoglobus fulgidus >gi|2650383|gb|AAB90976.1|
(AE001088) NADH oxidase (noxA-1) [Archaeoglobus
fulgidus]
Length = 439
Score = 214 bits (539), Expect = 2e-54
Identities = 144/443 (32%), Positives = 230/443 (51%), Gaps = 12/443 (2%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
M+V +IG G AG + A ++ L ++ V K + ++PC +P + G +EK +++
Sbjct: 1 MKVAIIGGGAAGMSAASRVKALRPNWDVKVFEKSRWVSHAPCGIPFFVGGAVEKFDELCA 60
Query: 61 FPNEFYEKQK-IKMMLGVEAKKIDRERKVVITDKGEVPY--DKLVLATGSKAFIPPIKGV 117
+ +++++++ I + +I+ R V E Y DKL+ ATGSKA ++G
Sbjct: 61 YDIDYFKRERGIDVHTNARVVEIEEGRLTVDEGGKEASYEWDKLLFATGSKAVRLNVEGE 120
Query: 118 ENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEH 177
EGV + +++ R+K I VV+G+G IG+E A+A +LG V V+E++E
Sbjct: 121 NLEGVIYVDDIENAERVK--IEAMKVDNVVVVGSGYIGVEMADAITRLGKNVTVIEVMER 178
Query: 178 LLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGDETVEADLVLVATG 236
LP D ++A+I++ ME++ V R V+ G VE V +L ++A G
Sbjct: 179 PLPEY-DAEIAAIIKSEMEKY-VNLRLSEKVTAFEGKDRVEKVVTNKGEYPCELAIIAVG 236
Query: 237 VRANVDLAKD-AGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAV 295
V N DLAK L V I N ++TS ++YA GDCAE I+ VTG+ L A
Sbjct: 237 VAPNTDLAKGFVELGVKGAIRTNSRMETSRENVYAAGDCAESINIVTGREDWIPLAAPAN 296
Query: 296 RMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTK 355
+M VA ++AG ++ + + +T D+EIG G++E A R G +VV T
Sbjct: 297 KMGYVAGVNMAGLEMHYPGSLKSQLTGFKDIEIGKAGLSENEAIRFGYEVVSAFITSRTS 356
Query: 356 PEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYLETA 415
Y PGG I +K++ G+L+G Q VG + V R+ SAL V+D+ + +
Sbjct: 357 ARYLPGGL-IHLKVV-ADRNGKLLGLQAVGKD-VAMRVYAASALLHKNGDVKDLFFCDFP 413
Query: 416 YAPPISPTIDPITVAADMALRKM 438
Y PP+S DP+ VAA RK+
Sbjct: 414 YYPPVSRVWDPLVVAARNIFRKL 436
>gi|11498556 NADH oxidase (noxA-4) [Archaeoglobus fulgidus]
>gi|7447167|pir||G69368 NADH oxidase (noxA-4) homolog -
Archaeoglobus fulgidus >gi|2649644|gb|AAB90289.1|
(AE001038) NADH oxidase (noxA-4) [Archaeoglobus
fulgidus]
Length = 429
Score = 212 bits (535), Expect = 5e-54
Identities = 127/334 (38%), Positives = 196/334 (58%), Gaps = 7/334 (2%)
Query: 4 VVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFPN 63
V+IG+ G +R+LD + I+VI E YS +P+ + G IE E + P
Sbjct: 6 VIIGNSAGGIGCVEAIRELDVDSSILVISAEKYHAYSRALIPYYLDGKIEF-EKMYYRPP 64
Query: 64 EFYEKQKIKMMLGVEAKKIDRERKVVITDKGE-VPYDKLVLATGSKAFIPPIKGVENEG- 121
+FYEK ++ LGV A +D E K V+ + GE V Y KL++ATG K FIPP++G+ +
Sbjct: 65 DFYEKMDVETKLGVRAVGVDVEAKKVLLESGEEVEYGKLLIATGGKPFIPPMEGLGGQSN 124
Query: 122 VFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPT 181
VFT +DDV +++ I + KKAVV+G G+IGL +E AK G++V VVEL + +L
Sbjct: 125 VFTFLKMDDVLAVEKAI--KEAKKAVVLGGGIIGLMASEVLAKKGLDVKVVELADRVLAP 182
Query: 182 MLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGD-ETVEADLVLVATGVRA 239
++D+ + IV++ EE+GV+ +S+++G VE V + D +EAD++LVA GV
Sbjct: 183 VVDETTSRIVERKFEENGVEIILNNTISKVVGEERVEKVILRDGRELEADMLLVAVGVVP 242
Query: 240 NVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAK 299
NVD+ K+ ++VNRGIVVN ++TS D+YA GDCAE+ D V G + L +A +
Sbjct: 243 NVDIVKNTPIKVNRGIVVNRKMETSVKDVYACGDCAEIYDFVFGANRVLPLWPTAYTGGR 302
Query: 300 VAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGM 333
+A ++ G + ++ + FD I G+
Sbjct: 303 IAGFNMVGIEREYNLATSMNAMHFFDYYIINAGL 336
>dbj|BAB04332.1| (AP001509) assimilatory nitrite reductase (subunit) [Bacillus
halodurans]
Length = 807
Score = 211 bits (531), Expect = 1e-53
Identities = 138/401 (34%), Positives = 222/401 (54%), Gaps = 16/401 (3%)
Query: 2 RVVVIGSGTAGSNFA--LFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVI 59
++VV+G+G AG LF R + E+ V+G+EP + Y+ L V++ ED+
Sbjct: 4 KLVVVGNGMAGIRTVEELFERGGHERYEVTVVGEEPHVNYNRILLSSVLASEANM-EDIE 62
Query: 60 VFPNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGE-VPYDKLVLATGSKAFIPPIKGVE 118
+ ++Y + + + + K+DR++KVV+TDKG+ + YDK++LATGS F+ P+ G +
Sbjct: 63 LNSLDWYRENDVTLYRSEKVTKLDRKKKVVLTDKGQKIAYDKVILATGSHPFMLPLPGSD 122
Query: 119 NEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHL 178
EGV ++++D + E +N KKAVVIG GL+G+E A LGMEV VV + ++L
Sbjct: 123 LEGVIAFRNIEDCETMIETA--KNYKKAVVIGGGLLGIEAARGLLNLGMEVEVVHIFDYL 180
Query: 179 LPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGDET-VEADLVLVATG 236
+ LD+ A+I++ +E G+KF IIG VE VK D T ADLV++A G
Sbjct: 181 MERQLDRTAANILRTELENQGMKFLLEKHTEAIIGKGRVERVKFKDGTETRADLVVMAVG 240
Query: 237 VRANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVR 296
+R N ++A +G+EVNRGIVV++Y+QTSDPD+YA+G+CAE V G L
Sbjct: 241 IRPNHEVASASGIEVNRGIVVDDYMQTSDPDVYAVGECAEHRGMVYG------LVAPLWE 294
Query: 297 MAKVAAEHIA-GKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTK 355
K+ A + KD K+ + ++ +++ + G +E+ + + ++ +F G K
Sbjct: 295 QGKILANALMDNKDEKYEGSVLYSKLKVSGVQVFSVGEFQEQDDAKSVS-MLDEFAGIYK 353
Query: 356 PEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTL 396
G K + L+ E ++ QI+ G G M L
Sbjct: 354 KIVTRGDKIVGSILVGDTSESTILLNQIIKGVPFEGSPMQL 394
>pir||B75451 NADH oxidase - Deinococcus radiodurans (strain R1)
>gi|6458718|gb|AAF10566.1|AE001951_6 (AE001951) NADH
oxidase [Deinococcus radiodurans]
Length = 449
Score = 210 bits (530), Expect = 2e-53
Identities = 143/450 (31%), Positives = 229/450 (50%), Gaps = 13/450 (2%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
MR+V++G AG + A ++ D AE++V + + Y C LP+V+ G + + +D+I
Sbjct: 1 MRIVIVGGVAAGMSAASRAKRFDPDAEVVVFERGDFISYGACGLPYVLGGAVGEWDDLIA 60
Query: 61 FPNEFYEKQKIKMMLGVEAKKIDRE-RKVVITDK--GEV---PYDKLVLATGSKAFIPPI 114
+ I + LG E +D E R V + D+ G V PYD+L++ATG A P
Sbjct: 61 RTPAQMRGRGIGVQLGHEVTGVDAEARTVTVLDRAAGRVATEPYDRLLVATGVSAVRPDW 120
Query: 115 KGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVEL 174
+ GV L+ + D + I + + + + ++G G IGLE AE + G+ V+++E
Sbjct: 121 AQTDLAGVHVLREIPDGQAIADSL--KGAGRVCIVGGGYIGLELAENMCRQGLSVVLLER 178
Query: 175 LEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP--VEAVKIGDETVEADLVL 232
+ +LD + + + HGV R G V +IG V V+ V AD+V+
Sbjct: 179 NPDVGGRVLDPEYRPRLLDELGRHGVDVRCGTTVEGLIGKAGRVTGVQTDGGLVRADVVV 238
Query: 233 VATGVRANVDLAKDAGLEVNR--GIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQL 290
VA GV+ NVDL + AG + + V+ QT+ +YA GD E + VT +R L
Sbjct: 239 VAVGVKPNVDLLRAAGARLGKTGAAAVDVRQQTNVDGVYAAGDNCESLHRVTRRRVHIPL 298
Query: 291 GTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKF 350
G +A RM ++A ++AG D KF V T+I ++F L + G+T+ A G++ V
Sbjct: 299 GLTANRMGRIAGINMAGGDAKFPGVVGTSIFKVFGLGVARTGLTQGEAAALGLNAVSVDV 358
Query: 351 RGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERV-WGRIMTLSALAQMGAKVEDI 409
+ YY +PI V+L + GRL+G Q+V + R+ ++A KVED+
Sbjct: 359 TSTDHAGYYADARPIHVRLTGERGTGRLLGGQLVAENPLSVKRVDVIAAHLHSRGKVEDL 418
Query: 410 AYLETAYAPPISPTIDPITVAADMALRKMK 439
++ AYAPP S D + VAAD R ++
Sbjct: 419 FQMDLAYAPPFSGVWDVLLVAADRLNRALR 448
>pir||D70372 NADH oxidase - Aquifex aeolicus >gi|2983379|gb|AAC06965.1|
(AE000709) NADH oxidase [Aquifex aeolicus]
Length = 474
Score = 208 bits (523), Expect = 1e-52
Identities = 131/354 (37%), Positives = 199/354 (56%), Gaps = 19/354 (5%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
M+VV++G+G A ++ RK+DR +EII++ E Y+P + +VI I K
Sbjct: 1 MKVVIVGNGPAAASAVEAFRKVDRDSEIIILSDEEFPTYAPNCMENVIRDDISKEALFYK 60
Query: 61 FPNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGE-VPYDKLVLATGSKAFIPPIKGVEN 119
+FYEK ++ E ID +RKVVIT KGE + YDK +LA G+ +FIPPI GV+
Sbjct: 61 GGEKFYEKYRVDFRPKTEVVGIDNKRKVVITKKGEEISYDKCLLAAGAYSFIPPIDGVDL 120
Query: 120 EGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLL 179
E V T K+L D +I+ +I KAV+IGAG IG+E AE +G++V V+E+ + +L
Sbjct: 121 ERVTTAKNLYDAYKIRSWILSGKITKAVIIGAGPIGIEDAETLRHMGIDVTVIEVFDRIL 180
Query: 180 PTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIG--NPVEAVKI----GDET--VEADLV 231
P MLD+ M + QK +EE G++F V I G VEAV++ D+T ++ D+V
Sbjct: 181 PRMLDRQMGKLYQKPLEEEGIEFLLEHQVVAIHGKNGEVEAVEVKKRGTDKTFFIKTDMV 240
Query: 232 LVATGVRANVDLAKDAGLEVNR---------GIVVNEYLQTSDPDIYAIGDCAEVIDAVT 282
+++TGVR L + +E++ GI+VNEY QTSDPD+YA GD A +D +
Sbjct: 241 IISTGVRPRTYLVEGTDIEIHMDKKLNKPIGGILVNEYQQTSDPDVYAAGDIASGVD-MW 299
Query: 283 GKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEE 336
G L A + VA ++AG V+ + + + + G+ G+ E+
Sbjct: 300 GNHRWIALFPPAQQAGYVAGFNMAGLKVRNNGLVDYNAVKTRSVTAGSGGLFED 353
>gb|AAB59997.1| (U19610) NADH oxidase [Brachyspira hyodysenteriae]
>gi|3916179|gb|AAC78811.1| (AF060802) NADH oxidase
[Brachyspira hyodysenteriae]
Length = 452
Score = 206 bits (520), Expect = 3e-52
Identities = 136/449 (30%), Positives = 231/449 (51%), Gaps = 19/449 (4%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
M+V+VIG AG+ A L+ D +++ + + + C + + G ++ P+ +
Sbjct: 1 MKVIVIGCNHAGTWAAKTLKATDPNCQVVTYDRNDNISFLACGIALWVGGVVKDPKGLFY 60
Query: 61 FPNEFYEKQKIKMMLGVEAKKID-RERKVVITD-----KGEVPYDKLVLATGSKAFIPPI 114
E + I + +G + KID +K+ + + + E YDKL+LATGS PPI
Sbjct: 61 ASPESLRGEGIDVYMGHDVTKIDWANKKLCVKELKTGKEFEDTYDKLILATGSWPVTPPI 120
Query: 115 KGVENEG--------VFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLG 166
+G++ EG +F K + I + I K + KK +V+GAG IG+E EAF G
Sbjct: 121 EGLKQEGTTYGLKKGIFFSKLYQQGQEIIDEIAKPDVKKVMVVGAGYIGVELIEAFKNHG 180
Query: 167 MEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGDET 225
EV+++E + ++ DK++ +K ++E G++ G V + G+ V+ V +
Sbjct: 181 KEVILMEAMPRVMANYFDKEITDEAEKRIKEAGIEMHLGETVKKFEGDDRVKKVVTDKGS 240
Query: 226 VEADLVLVATGVRANVDLAKDAGLEV--NRGIVVNEYLQTS-DPDIYAIGDCAEVIDAVT 282
+ D+V+++ G R N +L KD LE N IVV+ ++T+ DPD++AIGDCA V +
Sbjct: 241 YDVDMVVMSVGFRPNNELYKDY-LETLPNGAIVVDTTMKTTKDPDVFAIGDCATVYSRAS 299
Query: 283 GKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREG 342
K+ L T+AVRM VAA + GK V++ + +F + + G +EE AK++G
Sbjct: 300 EKQEYIALATNAVRMGIVAANNALGKHVEYCGTQGSNAICVFGYNMASTGWSEETAKKKG 359
Query: 343 IDVVVGKFRGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQM 402
+ V F+ S +PE+ P + + VK+I+ + RL+GAQI I S Q
Sbjct: 360 LKVKSNFFKDSERPEFMPTNEDVLVKIIYEEGSRRLLGAQIASKHNHAEAIHAFSLAIQN 419
Query: 403 GAKVEDIAYLETAYAPPISPTIDPITVAA 431
G V+ A + + P + + +T+ A
Sbjct: 420 GMTVDQFALSDFFFLPHYNKPLSWMTMVA 448
>gb|AAD20825.1| (AF029224) NirB [Staphylococcus carnosus]
Length = 801
Score = 205 bits (515), Expect = 1e-51
Identities = 132/389 (33%), Positives = 220/389 (55%), Gaps = 29/389 (7%)
Query: 2 RVVVIGSGTAG-SNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
R+V+IG+G AG + + K +I +IGKEP Y+ L +++ + E+ I+
Sbjct: 5 RLVMIGNGMAGVRTIEEIIDRDPDKFDITIIGKEPYPNYNRIMLSNILQKKMTV-EETIM 63
Query: 61 FPNEFYEKQKIKMMLGVEAKKIDRERKVVITDKG-EVPYDKLVLATGSKAFIPPIKGVEN 119
P +YE+ I ++ G +A +++RE+ +V T+KG E+PYD + ATGSKAF+ PI G E
Sbjct: 64 NPYSWYEENGIALITGEKATRVNREKHIVETEKGREIPYDICIFATGSKAFVLPIPGHEL 123
Query: 120 EGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLL 179
V ++++D R+ E ++ K+A VIG GL+GLE A GM V VV L E L+
Sbjct: 124 PSVIGWRTIEDTERMIEIA--QDKKEATVIGGGLLGLECARGLLDQGMNVTVVHLAEWLM 181
Query: 180 PTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGN-PVEAVKIGD-ETVEADLVLVATGV 237
LD+ ++++++E+ G+KF G EIIGN VEA+++ D + ADLV++A G+
Sbjct: 182 EMQLDRQAGDMLREDLEKQGMKFELGANTKEIIGNQDVEAIRLADGRDLPADLVVMAVGI 241
Query: 238 RANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRM 297
+ A D+G++V RGIVV+++++TSDP+IYA+G+CA+ V G L
Sbjct: 242 KPFTQEAIDSGIDVERGIVVDDFMRTSDPEIYAVGECAQHNCKVYG------LVAPLYEQ 295
Query: 298 AKVAAEHIAGKDVK-FRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKP 356
KV A+H+ G+ + ++ ++ ++ + G +E + EG+++ ++
Sbjct: 296 GKVLADHLTGRPTEGYQGSTTFTSLKVSGCDLYSAGQIQEDDEVEGVEIY------NSHD 349
Query: 357 EYYPGGKPITVKLIFRKEEGRLIGAQIVG 385
Y K IF KEE R++GA + G
Sbjct: 350 HVY--------KKIFLKEE-RVVGAVLYG 369
>sp|P37061|NAOX_ENTFA NADH OXIDASE (NOXASE) >gi|282279|pir||S26965 NADH oxidase -
Enterococcus faecalis >gi|47045|emb|CAA48728.1| (X68847)
NADH oxidase [Enterococcus faecalis]
Length = 446
Score = 203 bits (511), Expect = 3e-51
Identities = 132/454 (29%), Positives = 219/454 (48%), Gaps = 24/454 (5%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
M+VVV+G AG++ + +AE+ V + + + C + + G ++ D+
Sbjct: 1 MKVVVVGCTHAGTSAVKSILANHPEAEVTVYERNDNISFLSCGIALYVGGVVKNAADL-- 58
Query: 61 FPNEFYEKQKIKMMLGVEAKKIDRERKVVITDKG------------EVPYDKLVLATGSK 108
FY + LG K ++ + DK V YDKLV+ TGS
Sbjct: 59 ----FYSNPEELASLGATVKMEHNVEEINVDDKTVTAKNLQTGATETVSYDKLVMTTGSW 114
Query: 109 AFIPPIKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGME 168
IPPI G++ E + K+ I E ++ K+ VV+G G IG+E EAF + G +
Sbjct: 115 PIIPPIPGIDAENILLCKNYSQANVIIEKA--KDAKRVVVVGGGYIGIELVEAFVESGKQ 172
Query: 169 VLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP---VEAVKIGDET 225
V +V+ L+ +L LDK +++K + + GV G V + + + V V +
Sbjct: 173 VTLVDGLDRILNKYLDKPFTDVLEKELVDRGVNLALGENVQQFVADEQGKVAKVITPSQE 232
Query: 226 VEADLVLVATGVRANVDLAKD-AGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGK 284
EAD+V++ G R N +L KD + N I VNEY+QTS+PDI+A GD A V +
Sbjct: 233 FEADMVIMCVGFRPNTELLKDKVDMLPNGAIEVNEYMQTSNPDIFAAGDSAVVHYNPSQT 292
Query: 285 RTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGID 344
+ L T+AVR + ++ + + +R T+ LF +IG+ G+T+E AK G+D
Sbjct: 293 KNYIPLATNAVRQGMLVGRNLTEQKLAYRGTQGTSGLYLFGWKIGSTGVTKESAKLNGLD 352
Query: 345 VVVGKFRGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGA 404
V F + +PE+ P + + ++L++ K R++G Q++ + TLS Q
Sbjct: 353 VEATVFEDNYRPEFMPTTEKVLMELVYEKGTQRIVGGQLMSKYDITQSANTLSLAVQNKM 412
Query: 405 KVEDIAYLETAYAPPISPTIDPITVAADMALRKM 438
VED+A + + P + + + A AL M
Sbjct: 413 TVEDLAISDFFFQPHFDRPWNYLNLLAQAALENM 446
>pir||D72382 hypothetical protein TM0395 - Thermotoga maritima (strain MSB8)
>gi|4980899|gb|AAD35480.1|AE001719_6 (AE001719) NADH
oxidase, putative [Thermotoga maritima]
Length = 425
Score = 200 bits (503), Expect = 3e-50
Identities = 108/317 (34%), Positives = 192/317 (60%), Gaps = 7/317 (2%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
MR V++GSG AG N +R++D++ EI++I E + YS + +++ + + E +
Sbjct: 1 MRYVIVGSGPAGLNAIEAIREVDKEGEILLITAEKYVGYSRPLITYLLGRKVTE-EKMYY 59
Query: 61 FPNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGE-VPYDKLVLATGSKAFIPPIKGVEN 119
++ + ++ + +K+ E K V+TD GE + YDKL++ATG K F+P I+G+
Sbjct: 60 RTEDYLREMRVDIKPATRVEKVIPEEKTVVTDSGEEIRYDKLLIATGGKPFVPNIEGLTG 119
Query: 120 E-GVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHL 178
+ GVFT + +D ++++YI + + K+AVV+G GLIGL+ EA +LG++V +VEL + +
Sbjct: 120 KKGVFTFTTWEDEEKVEKYIEENDVKEAVVLGGGLIGLKTTEALMELGVKVTIVELADRI 179
Query: 179 LPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEA---VKIGDETVEADLVLVAT 235
L D+ + I+ + +++ G V ++ G+ + +K G E + L+++A
Sbjct: 180 LSVTFDRKASEIITEALKKEGCSVITNDTVVKVNGDDTVSSVVLKSGKE-IPTKLLVIAI 238
Query: 236 GVRANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAV 295
GV+ NV+ KD+G+E+NRGIVVNE ++T+ +YA GDC E D + G+R + AV
Sbjct: 239 GVKPNVEFLKDSGIEINRGIVVNEKMETNVEGVYAAGDCTEFYDLIDGQRKTIAIWPVAV 298
Query: 296 RMAKVAAEHIAGKDVKF 312
+VA ++AGK+V++
Sbjct: 299 AQGRVAGYNMAGKNVRY 315
>gb|AAC78820.1| (AF060811) NADH oxidase [Serpulina intermedia]
Length = 415
Score = 198 bits (498), Expect = 1e-49
Identities = 128/415 (30%), Positives = 215/415 (50%), Gaps = 19/415 (4%)
Query: 11 AGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFPNEFYEKQK 70
AG+ L+ D +++ + + + C + + G ++ P+ + E + +
Sbjct: 2 AGTWAVKTLKATDPNCQVVTYDRNDNISFLACGIALWVGGVVKDPKGLFYASPESLKSEG 61
Query: 71 IKMMLGVEAKKID-RERKVVITD-----KGEVPYDKLVLATGSKAFIPPIKGVENEG--- 121
+++ +G + KID +K+ + + + E YDKL+LATGS PPI+G++ EG
Sbjct: 62 VEVHMGHDVTKIDWANKKLYVKELKTGKEFEDTYDKLILATGSWPVTPPIEGLKQEGTTY 121
Query: 122 -----VFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLE 176
+F K + I E + K KK +V+GAG IG+E EAF G EV+++E L
Sbjct: 122 GLKKGIFFSKLYQQGQEIIEELKKPEVKKVMVVGAGYIGVELIEAFKNHGKEVILMEALP 181
Query: 177 HLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGDETVEADLVLVAT 235
++ DK++ +K ++E G++ G V + G+ V+ V + E D+V+++
Sbjct: 182 RVMGNYFDKEITDEAEKRIKEAGIEMHLGETVKKFEGDDRVKKVVTDKGSYEVDMVVMSV 241
Query: 236 GVRANVDLAKDAGLEV--NRGIVVNEYLQTS-DPDIYAIGDCAEVIDAVTGKRTLSQLGT 292
G + N DL KD LE N IVV+ ++TS DPD+YAIGDCA V + K+ L T
Sbjct: 242 GFKPNSDLYKDY-LETLPNGAIVVDTTMKTSKDPDVYAIGDCASVYSRASEKQEYIALAT 300
Query: 293 SAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRG 352
+AVRM VAA + GK V++ + +F + + G +EE AK++G+ F+
Sbjct: 301 NAVRMGIVAANNALGKHVEYCGTQGSNAICVFGYNMASTGWSEETAKKKGLKAKSNFFKD 360
Query: 353 STKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVE 407
S +PE+ P + + VK+++ ++ GRL+GAQI I S Q G V+
Sbjct: 361 SERPEFMPTHEEVLVKIVYEEDTGRLLGAQIASKNNHAEAIHAFSIAIQRGMTVQ 415
>gb|AAC78821.1| (AF060812) NADH oxidase [Serpulina intermedia]
Length = 423
Score = 195 bits (491), Expect = 7e-49
Identities = 127/418 (30%), Positives = 215/418 (51%), Gaps = 19/418 (4%)
Query: 11 AGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFPNEFYEKQK 70
AG+ L+ D +++ + + + C + + G ++ P+ + E + +
Sbjct: 1 AGTWAVKTLKATDPNCQVVTYDRNDNISFLACGIALWVGGVVKDPKGLFYASPESLKSEG 60
Query: 71 IKMMLGVEAKKID-RERKVVITD-----KGEVPYDKLVLATGSKAFIPPIKGVENEG--- 121
+++ +G + KID +K+ + + + E YDKL+LATGS PPI+G++ EG
Sbjct: 61 VEVHMGHDVTKIDWANKKLYVKELKTGKEFEDTYDKLILATGSWPVTPPIEGLKQEGTTY 120
Query: 122 -----VFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLE 176
+F K + I E + K KK +V+GAG IG+E EAF G EV+++E L
Sbjct: 121 GLKKGIFFSKLYQQGQEIIEELKKPEVKKVMVVGAGYIGVELIEAFKNHGKEVILMEALP 180
Query: 177 HLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGDETVEADLVLVAT 235
++ DK++ +K ++E G++ G V + G+ V+ V + E D+V+++
Sbjct: 181 RVMGNYFDKEITDEAEKRIKEAGIEMHLGETVKKFEGDDRVKKVVTDKGSYEVDMVVMSV 240
Query: 236 GVRANVDLAKDAGLEV--NRGIVVNEYLQTS-DPDIYAIGDCAEVIDAVTGKRTLSQLGT 292
G + N DL KD LE N IVV+ ++TS DPD+YAIGDCA V + K+ L T
Sbjct: 241 GFKPNSDLYKDY-LETLPNGAIVVDTTMKTSKDPDVYAIGDCASVYSRASEKQEYIALAT 299
Query: 293 SAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRG 352
+AVRM VAA + GK V++ + +F + + G +EE AK++G+ F+
Sbjct: 300 NAVRMGIVAANNALGKHVEYCGTQGSNAICVFGYNMASTGWSEETAKKKGLKAKSNFFKD 359
Query: 353 STKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIA 410
S +PE+ P + + VK+++ ++ GRL+ AQI I S Q V++ A
Sbjct: 360 SERPEFMPTHEEVLVKIVYEEDTGRLLXAQIASKNNHAEAIHAFSIAIQRSMTVQEFA 417
>pir||C70319 nitrite reductase (NAD(P)H) large subunit - Aquifex aeolicus
>gi|2982926|gb|AAC06543.1| (AE000678) nitrite reductase
(NAD(P)H) large subunit [Aquifex aeolicus]
Length = 1002
Score = 194 bits (487), Expect = 2e-48
Identities = 125/395 (31%), Positives = 221/395 (55%), Gaps = 31/395 (7%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLD--RKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDV 58
M+VV++G+G AG+ + +L + I V G E + Y+ + V++G + ++
Sbjct: 1 MKVVIVGNGIAGTALVEEILRLSSGKDIRIQVFGDEKFIGYNRVLITEVLAGR-KTLSEI 59
Query: 59 IVFPNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGEV-PYDKLVLATGSKAFIPP-IKG 116
+ ++YE++ +++ +G + +++ +K+++T GE YDK ++ATGSK FIPP IKG
Sbjct: 60 YIKRWQWYEEKGVRLEIGKKVERLFPNKKILVTKDGEFYRYDKAIIATGSKPFIPPSIKG 119
Query: 117 VENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLE 176
V +GVFT ++ DV I +Y R K+AVVIG GL+G+E +A +G+EV +V +L+
Sbjct: 120 VNKKGVFTYRTAKDVFEILDYA--RVSKRAVVIGGGLLGIEVTKALRDIGLEVFLVHILD 177
Query: 177 HLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGD-ETVEADLVLVA 234
L+ LDK + +++K++E+ G+K EI+G E V+ D + + AD V++A
Sbjct: 178 TLMEQQLDKTASELLRKDLEDMGIKVLLKKVTEEILGEKKAEGVRFSDGDELLADFVIIA 237
Query: 235 TGVRANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSA 294
TG+R NV++ ++GL+VN+GIVVN+YL+TS DIYA+G+C E G L
Sbjct: 238 TGIRPNVEVGVNSGLKVNKGIVVNDYLETSASDIYAVGECIEHRGKTYG------LVAPI 291
Query: 295 VRMAKVAAEHIA-GKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGS 353
+ KV A ++ G + K+ A+ ++ + + + G E ++G +VV
Sbjct: 292 MEQVKVCAHNVVHGNEKKYTGSLTYAMLKVAGVNLFSAGEINE---KDGDEVVA------ 342
Query: 354 TKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGER 388
+ G+ + K + R +++G + G R
Sbjct: 343 ----FLDNGRSLYRKAVIR--NNKIVGTILYGDVR 371
>gb|AAC78810.1| (AF060801) NADH oxidase [Brachyspira hyodysenteriae]
Length = 420
Score = 193 bits (486), Expect = 3e-48
Identities = 128/418 (30%), Positives = 215/418 (50%), Gaps = 19/418 (4%)
Query: 11 AGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFPNEFYEKQK 70
AG+ A L+ D +++ + + + C + + G ++ P+ + E +
Sbjct: 1 AGTWAAKTLKATDPNCQVVTYDRNDNISFLACGIALWVGGVVKDPKGLFYASPESLRGEG 60
Query: 71 IKMMLGVEAKKID-RERKVVITD-----KGEVPYDKLVLATGSKAFIPPIKGVENEG--- 121
I + +G + KID +K+ + + + E YDKL+LATGS PPI+G++ EG
Sbjct: 61 IDVYMGHDVTKIDWANKKLCVKELKTGKEFEDTYDKLILATGSWPVTPPIEGLKQEGTTY 120
Query: 122 -----VFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLE 176
+F K + I + I K + KK +V+GAG IG+E EAF G EV+++E +
Sbjct: 121 GLKKGIFFSKLYQQGQEIIDEIAKPDVKKVMVVGAGYIGVELIEAFKNHGKEVILMEAMP 180
Query: 177 HLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGDETVEADLVLVAT 235
++ DK++ +K ++E G++ G V + G+ V+ V + + D+V+++
Sbjct: 181 RVMANYFDKEITDEAEKRIKEAGIEMHLGETVKKFEGDDRVKKVVTDKGSYDVDMVVMSV 240
Query: 236 GVRANVDLAKDAGLEV--NRGIVVNEYLQTS-DPDIYAIGDCAEVIDAVTGKRTLSQLGT 292
G R N +L KD LE N IVV+ ++T+ DPD++AIGDCA V + K+ L T
Sbjct: 241 GFRPNNELYKDY-LETLPNGAIVVDTTMKTTKDPDVFAIGDCATVYSRASEKQEYIALAT 299
Query: 293 SAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRG 352
+AVRM VAA + GK V++ + +F + + G +EE AK++G+ V F+
Sbjct: 300 NAVRMGIVAANNALGKHVEYCGTQGSNAICVFGYNMASTGWSEETAKKKGLKVKSNFFKD 359
Query: 353 STKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIA 410
S +PE+ P + + VK+I+ + RL+GAQI I S Q G V+ A
Sbjct: 360 SERPEFMPTNEDVLVKIIYEEGSRRLLGAQIASKHNHAEAIHAFSLAIQNGMTVDQFA 417
>gb|AAC78824.1| (AF060815) NADH oxidase [Serpulina sp. P280/1]
Length = 420
Score = 192 bits (483), Expect = 6e-48
Identities = 125/410 (30%), Positives = 210/410 (50%), Gaps = 19/410 (4%)
Query: 19 LRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFPNEFYEKQKIKMMLGVE 78
L+ D +++ + + + C + + G ++ P+ + E + + I + +G E
Sbjct: 6 LKATDPNCKVVTYDRNDNISFLACGIALWVGGVVKDPKGLFYATPESLKGEGIDVYMGHE 65
Query: 79 AKKID-RERKVVITD-----KGEVPYDKLVLATGSKAFIPPIKGVENEG--------VFT 124
KID +K+ + + + E YDKL+LATGS PPI+G++ EG +F
Sbjct: 66 VMKIDWANKKLHVKELKTGKEFEDTYDKLILATGSWPVTPPIEGLKQEGTEYGLKKGIFF 125
Query: 125 LKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLD 184
K + I I K KK +V+GAG IG+E EAF G EV+++E + ++ D
Sbjct: 126 SKLFQQGQDIINEIAKPEVKKVMVVGAGYIGVELIEAFKNHGKEVILMEAMPRVMANYFD 185
Query: 185 KDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGDETVEADLVLVATGVRANVDL 243
K++ +K ++E G++ G V + G+ V+ V + + D+V+++ G R N +L
Sbjct: 186 KEITDEAEKRIKEAGIEMHLGETVKKFEGDDRVKKVVTDKGSYDVDMVVMSVGFRPNSEL 245
Query: 244 AKDAGLEV--NRGIVVNEYLQTS-DPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKV 300
KD LE N IVV+ +++S DPD+YAIGDCA V + K+ L T+AVRM V
Sbjct: 246 YKDY-LETLPNGAIVVDTTMKSSKDPDVYAIGDCATVYSRASEKQEYIALATNAVRMGIV 304
Query: 301 AAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYP 360
AA + GK V++ + +F + + G +EE AK++G+ F+ S +PE+ P
Sbjct: 305 AANNALGKHVEYCGTQGSNAICVFGYNMASTGWSEETAKKKGLKAKSNFFKDSERPEFMP 364
Query: 361 GGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIA 410
G + + VK+++ + GRL+ AQI I S Q V++ A
Sbjct: 365 GNEDVLVKIVYEEGTGRLLSAQIASEHNHAEAIHAFSLAIQRSMTVQEFA 414
>gb|AAC78809.1| (AF060800) NADH oxidase [Brachyspira hyodysenteriae]
Length = 415
Score = 192 bits (482), Expect = 8e-48
Identities = 127/415 (30%), Positives = 214/415 (50%), Gaps = 19/415 (4%)
Query: 11 AGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFPNEFYEKQK 70
AG+ A L+ D +++ + + + C + + G ++ P+ + E +
Sbjct: 1 AGTWAAKTLKATDPNCQVVTYDRNDNISFLACGIALWVGGVVKDPKGLFYASPESLRGEG 60
Query: 71 IKMMLGVEAKKID-RERKVVITD-----KGEVPYDKLVLATGSKAFIPPIKGVENEG--- 121
I + +G + KID +K+ + + + E YDKL+LATGS PPI+G++ EG
Sbjct: 61 IDVYMGHDVTKIDWANKKLCVKELKTGKEFEDTYDKLILATGSWPVTPPIEGLKQEGTTY 120
Query: 122 -----VFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLE 176
+F K + I + I K + KK +V+GAG IG+E EAF G EV+++E +
Sbjct: 121 GLKKGIFFSKLYQQGQEIIDEIAKPDVKKVMVVGAGYIGVELIEAFKNHGKEVILMEAMP 180
Query: 177 HLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGDETVEADLVLVAT 235
++ DK++ +K ++E G++ G V + G+ V+ V + + D+V+++
Sbjct: 181 RVMANYFDKEITDEAEKRIKEAGIEMHLGETVKKFEGDDRVKKVVTDKGSYDVDMVVMSV 240
Query: 236 GVRANVDLAKDAGLEV--NRGIVVNEYLQTS-DPDIYAIGDCAEVIDAVTGKRTLSQLGT 292
G R N +L KD LE N IVV+ ++T+ DPD++AIGDCA V + K+ L T
Sbjct: 241 GFRPNNELYKDY-LETLPNGAIVVDTTMKTTKDPDVFAIGDCATVYSRASEKQEYIALAT 299
Query: 293 SAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRG 352
+AVRM VAA + GK V++ + +F + + G +EE AK++G+ V F+
Sbjct: 300 NAVRMGIVAANNALGKHVEYCGTQGSNAICVFGYNMASTGWSEETAKKKGLKVKSNFFKD 359
Query: 353 STKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVE 407
S +PE+ P + + VK+I+ + RL+GAQI I S Q G V+
Sbjct: 360 SERPEFMPTNEDVLVKIIYEEGSRRLLGAQIASKHNHAEAIHAFSLAIQNGMTVD 414
>pir||H72337 oxidoreductase - Thermotoga maritima (strain MSB8)
>gi|4981281|gb|AAD35836.1|AE001745_3 (AE001745)
oxidoreductase [Thermotoga maritima]
Length = 358
Score = 191 bits (480), Expect = 1e-47
Identities = 118/339 (34%), Positives = 197/339 (57%), Gaps = 19/339 (5%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
M+VV++G+G G A ++L + E+ ++ +E Y+ L H ++G E+ + +
Sbjct: 1 MKVVIVGNGPGGVELA---KQLSEEHEVTIVERETVPYYTKPMLSHYVAGLAEE-KSLFP 56
Query: 61 FPNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGEVPYDKLVLATGSKAFIPPIKGVENE 120
+P ++YEK+ IK++LG AK+ID E+KV+ TD+G + YD LVLATG+K I G E
Sbjct: 57 YPIDWYEKKGIKLLLGTTAKRIDAEKKVLETDRGTLEYDVLVLATGAKPRTLKIPGWER- 115
Query: 121 GVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLP 180
++TL++++D +R+K + + K ++IG G IGLE A +K G++V VVE + L+
Sbjct: 116 -MYTLRTIEDAKRLKGAVERE--KDLLIIGGGFIGLEIAGNLSKQGIKVKVVEKMTRLMG 172
Query: 181 TMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKIGDETVEADLVLVATGVRAN 240
LD+++ ++ +E+HGV+F G V I + + K E + A ++L + G+
Sbjct: 173 --LDEELTERIKGELEKHGVEFYLGRDVERIENDVLVTDK---EEIPARVILCSIGIVPE 227
Query: 241 VDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKV 300
V LAK++GL+VNRGI+V++ +TS PDIYAIGDCAE + G +A+ AKV
Sbjct: 228 VSLAKESGLDVNRGILVDKTFRTSKPDIYAIGDCAEHEGIICG------TAKAAMAHAKV 281
Query: 301 AAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAK 339
A + G ++ F ++ + D I G +R +
Sbjct: 282 LANTLKGIPDEYDFHFRSSYFKFGDFPIAIVGELTDRGE 320
>gb|AAC78822.1| (AF060813) NADH oxidase [Serpulina murdochii]
Length = 424
Score = 189 bits (474), Expect = 7e-47
Identities = 124/418 (29%), Positives = 211/418 (49%), Gaps = 19/418 (4%)
Query: 11 AGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFPNEFYEKQK 70
AG+ A L+ D +++ + + + C + + G ++ P+ + E + +
Sbjct: 2 AGTWAAKTLKATDPNCQVVTYDRNDNISFLACGIALWVGGVVKDPKGLFYASPESLKAEG 61
Query: 71 IKMMLGVEAKKIDRERKVVITDKGEVP------YDKLVLATGSKAFIPPIKGVENEG--- 121
I + +G + KID K + + + YDKL+LATGS PPI+G+ EG
Sbjct: 62 IDVYMGHDVTKIDWANKKLHVKELKTGKEFDDNYDKLILATGSWPVTPPIEGLMQEGTEY 121
Query: 122 -----VFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLE 176
+F K + I + I K KK +V+GAG IG+E EAF G EV+++E +
Sbjct: 122 GLKKGIFFSKLFQQGQEIIDEIAKPEVKKVMVVGAGYIGVELIEAFKNHGKEVILMEAMP 181
Query: 177 HLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGDETVEADLVLVAT 235
++ DK++ +K ++E G++ G V + G+ V+ V + + D+V+++
Sbjct: 182 RVMANYFDKEITDEAEKRIKEAGIEMHLGETVKKFEGDDRVKRVVTDKGSYDVDMVVMSV 241
Query: 236 GVRANVDLAKDAGLEV--NRGIVVNEYLQTS-DPDIYAIGDCAEVIDAVTGKRTLSQLGT 292
G R N +L KD LE N I V+ ++T+ DP+++AIGDCA V +GK L T
Sbjct: 242 GFRPNSELYKDY-LETLPNGAIKVDTTMKTTKDPNVFAIGDCATVYSRASGKEEYIALAT 300
Query: 293 SAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRG 352
+AVRM VAA + GK V++ + +F + + G +EE AK++G+ V F+
Sbjct: 301 NAVRMGIVAANNALGKHVEYCGTQGSNAICVFGYNMASTGWSEETAKKKGLKVKSNFFKD 360
Query: 353 STKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIA 410
+ +PE+ P + + VK+I+ ++ R++GAQI I S Q G V+ A
Sbjct: 361 AERPEFMPSYEDVLVKIIYEEDTRRMVGAQIASKHNHAEAIHAFSLAIQNGMTVDQFA 418
>gb|AAC78814.1| (AF060805) NADH oxidase [Brachyspira innocens]
Length = 416
Score = 187 bits (471), Expect = 2e-46
Identities = 123/415 (29%), Positives = 210/415 (49%), Gaps = 19/415 (4%)
Query: 11 AGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFPNEFYEKQK 70
AG+ A L+ D +++ + + + C + + G ++ P+ + E + +
Sbjct: 2 AGTWAAKTLKATDPNCQVVTYDRNDNISFLACGIALWVGGVVKDPKGLFYASPESLKAEG 61
Query: 71 IKMMLGVEAKKIDRERKVVITDKGEVP------YDKLVLATGSKAFIPPIKGVENEG--- 121
I + +G + KID K + + + YDKL+LATGS PPI+G+ EG
Sbjct: 62 IDVYMGHDVTKIDWANKKLHVKELKTGKEFDDNYDKLILATGSWPVTPPIEGLMQEGTEY 121
Query: 122 -----VFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLE 176
+F K + I + I K KK +V+GAG IG+E EAF G EV+++E +
Sbjct: 122 GLKKGIFFSKLFQQGQEIIDEIAKPEVKKVMVVGAGYIGVELIEAFKNHGKEVILMEAMP 181
Query: 177 HLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGDETVEADLVLVAT 235
++ DK++ +K ++E G++ G V + G+ V+ V + + D+V+++
Sbjct: 182 RVMANYFDKEITDETEKRIKEAGIEMHLGETVKKFEGDDRVKKVITDKGSYDVDMVVMSV 241
Query: 236 GVRANVDLAKDAGLEV--NRGIVVNEYLQTS-DPDIYAIGDCAEVIDAVTGKRTLSQLGT 292
G R N +L KD LE N I V+ ++T+ DP+++AIGDCA V +GK L T
Sbjct: 242 GFRPNSELYKDY-LETLPNGAIKVDTTMKTTKDPNVFAIGDCATVYSRASGKEEYIALAT 300
Query: 293 SAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRG 352
+AVRM VAA + GK V++ + +F + + G +EE AK++G+ V F+
Sbjct: 301 NAVRMGIVAANNALGKHVEYCGTQGSNAICVFGYNMASTGWSEETAKKKGLKVKSNFFKD 360
Query: 353 STKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVE 407
+ +PE+ P + + VK+I+ ++ R++GAQI I S Q G V+
Sbjct: 361 AERPEFMPSYEDVLVKIIYEEDTRRMVGAQIASNHNHAEAIHAFSLAIQNGMTVD 415
>gb|AAC78823.1| (AF060814) NADH oxidase [Serpulina alvinipulli]
Length = 421
Score = 187 bits (471), Expect = 2e-46
Identities = 126/418 (30%), Positives = 215/418 (51%), Gaps = 19/418 (4%)
Query: 11 AGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFPNEFYEKQK 70
AG+ A L K E++ + + + C + + G ++ P+ + E + +
Sbjct: 1 AGTWAAKTLAASKXKCEVVTYDRNDNISFLACGIALWVGGVVKDPKGLFYASPESLKSEG 60
Query: 71 IKMMLGVEAKKID-RERKVVITD-----KGEVPYDKLVLATGSKAFIPPIKGVENEG--- 121
I + +G E KID +K+ I + + + YDKL+LATGS PPI+G+ EG
Sbjct: 61 IDVHMGHEVMKIDWANKKLHIKELKTGKEFDDNYDKLILATGSWPVTPPIEGLMQEGTTY 120
Query: 122 -----VFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLE 176
+F K + I + I K + K+ +V+GAG IG+E EAF G EV+++E +
Sbjct: 121 GLKKGIFFSKLYQQGQEIIDEIAKPDVKRVMVVGAGYIGVELIEAFKNHGKEVILMESMP 180
Query: 177 HLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGDETVEADLVLVAT 235
++ DK++ +K ++E G++ G V + G+ V+ V + + D+V+++
Sbjct: 181 RVMANYFDKEITDEAEKRIKEAGIEMHLGETVKKFEGDDRVKKVVTDKGSYDVDMVVMSV 240
Query: 236 GVRANVDLAKDAGLEV--NRGIVVNEYLQTS-DPDIYAIGDCAEVIDAVTGKRTLSQLGT 292
G R N +L KD LE N IVV+ ++TS D ++YAIGDC+ V + K+ L T
Sbjct: 241 GFRPNSELYKDY-LETLPNGAIVVDTTMKTSKDENVYAIGDCSTVYSRASEKQEYIALAT 299
Query: 293 SAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRG 352
+AVRM VAA +I G V++ + +F + + G +E+ AK++G+ V F+
Sbjct: 300 NAVRMGIVAANNIVGNKVEYCGTQGSNAICVFGYNMASTGWSEDTAKKKGLKVKSNFFKD 359
Query: 353 STKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIA 410
+ +PE+ P + + VK+++ + GRL+GAQI I S Q G V++ A
Sbjct: 360 AERPEFMPTHEDVLVKIVYEEGTGRLLGAQIASKNNHAEAIHAFSLAIQRGMTVQEFA 417
>gb|AAC78812.1| (AF060803) NADH oxidase [Serpulina murdochii]
Length = 421
Score = 187 bits (470), Expect = 2e-46
Identities = 121/410 (29%), Positives = 207/410 (49%), Gaps = 19/410 (4%)
Query: 19 LRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFPNEFYEKQKIKMMLGVE 78
L+ D +++ + + + C + + G ++ P+ + E + + I + +G +
Sbjct: 7 LKATDPNCQVVTYDRNDNISFLACGIALWVGGVVKDPKGLFYASPESLKAEGIDVYMGHD 66
Query: 79 AKKIDRERKVVITDKGEVP------YDKLVLATGSKAFIPPIKGVENEG--------VFT 124
KID K + + + YDKL+LATGS PPI+G+ EG +F
Sbjct: 67 VTKIDWANKKLHVKELKTGKEFDDNYDKLILATGSWPVTPPIEGLMQEGTEYGLKKGIFF 126
Query: 125 LKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLD 184
K + I + I K KK +V+GAG IG+E EAF G EV+++E + ++ D
Sbjct: 127 SKLFQQGQEIIDEIAKPEVKKVMVVGAGYIGVELIEAFKNHGKEVILMEAMPRVMANYFD 186
Query: 185 KDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGDETVEADLVLVATGVRANVDL 243
K++ +K ++E G++ G V + G+ V+ V + + D+V+++ G R N +L
Sbjct: 187 KEITDEAEKRIKEAGIEMHLGETVKKFEGDDRVKRVVTDKGSYDVDMVVMSVGFRPNSEL 246
Query: 244 AKDAGLEV--NRGIVVNEYLQTS-DPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKV 300
KD LE N I V+ ++T+ DP+++AIGDCA V +GK L T+AVRM V
Sbjct: 247 YKDY-LETLPNGAIKVDTTMKTTKDPNVFAIGDCATVYSRASGKEEYIALATNAVRMGIV 305
Query: 301 AAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYP 360
AA + GK V++ + +F + + G +EE AK++G+ V F+ + +PE+ P
Sbjct: 306 AANNALGKHVEYCGTQGSNAICVFGYNMASTGWSEETAKKKGLKVKSNFFKDAERPEFMP 365
Query: 361 GGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIA 410
+ + VK+I+ ++ R++GAQI I S Q G V+ A
Sbjct: 366 SYEDVLVKIIYEEDTXRMVGAQIASKHNHAEAIHAFSLAIQNGMTVDQFA 415
>pir||B71078 probable NADH oxidase - Pyrococcus horikoshii
>gi|3257301|dbj|BAA29984.1| (AP000004) 397aa long
hypothetical NADH oxidase [Pyrococcus horikoshii]
Length = 397
Score = 187 bits (470), Expect = 2e-46
Identities = 127/387 (32%), Positives = 210/387 (53%), Gaps = 34/387 (8%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
MR V+IG+G AG+ A +R + + EIIVI +E T+ YSP ALP+ I G++ + E + +
Sbjct: 1 MRHVIIGAGGAGTAAAETIRA-NSEDEIIVINREKTLPYSPAALPYYIEGSVRR-EKLFI 58
Query: 61 FPNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGE-VPYDKLVLATGSKAFIPPIKGVEN 119
+ F I ++G E K++D ERK VI D GE + YDKL++++G+K I P +
Sbjct: 59 WDWHFIRSNSIDYIMGREVKRVDTERKKVILDNGEEIEYDKLLISSGAKPRIVP--QFDR 116
Query: 120 EGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLL 179
E V +++L+D R+++ G+ ++IGAG + +E A A K+G + +++ +L
Sbjct: 117 ENVIGVRTLEDAERLRKVKGR-----VIIIGAGPVAVETAIALKKIGADPIII-CRSRIL 170
Query: 180 PTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKIGDETVEADLVLVATGVRA 239
+ D+D+++I++ M +GVK F + EIIG+P E +K + DL++ A GV
Sbjct: 171 RRLFDEDISNIIRDVMILNGVKVLFEKSI-EIIGDPAEGIKAPCGVIYGDLIVAALGVTP 229
Query: 240 NVD-LAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMA 298
N++ L L + GI+ NE ++T+ D+YA GDCAE D ++G+ + + A
Sbjct: 230 NLNFLDGKIKLGEHGGILTNEKMETNVKDVYAAGDCAETKDVISGRYGIFAIWPLAREQG 289
Query: 299 KVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEY 358
+VA ++ G + +R N I +FD + +G F G+ K +
Sbjct: 290 RVAGYNMLGHEKHYRGSINMNIITIFDKVFAS----------------IGTFMGARKEIW 333
Query: 359 YPGGKPITVKLIFRKEEGRLIGAQIVG 385
+ G I I E GRL GAQ+VG
Sbjct: 334 H--GSHIAKLFI---ENGRLNGAQLVG 355
>emb|CAA32416.1| (X14202) NADH-dependent nitrite reductase (nirB) (AA 1-839)
[Escherichia coli]
Length = 839
Score = 187 bits (469), Expect = 3e-46
Identities = 134/406 (33%), Positives = 204/406 (50%), Gaps = 33/406 (8%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKA--EIIVIGKEPTMQYSPCALPHVISGTIEKPEDV 58
+R+ +IG+G G F L A +I V +EP + Y L S E++
Sbjct: 4 VRLAIIGNGMVGHRFIEDLLDKSDAANFDITVFCEEPRIAYDRVHLSSYFSH--HTAEEL 61
Query: 59 IVFPNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGE-VPYDKLVLATGSKAFIPPIKGV 117
+ FYEK IK+++G A I+R+ KV+ + G V YDKL++ATGS +IPPIKG
Sbjct: 62 SLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKGS 121
Query: 118 ENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEH 177
+ + F ++++D+ I+ R K+ V+G GL+GLE A A LG+E V+E
Sbjct: 122 DTQDCFVYRTIEDLNAIESCA--RRSKRGAVVGGGLLGLEAAGALKNLGIETHVIEFAPM 179
Query: 178 LLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKI-----GDETVEADLVL 232
L+ LD+ +++ +E GV+ EI+ VEA K G E +E D ++
Sbjct: 180 LMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSE-LEVDFIV 238
Query: 233 VATGVRANVDLAKDAGLEV--NRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQL 290
+TG+R LA GL+V GIV+N+ QTSDPDIYAIG+CA + V G L
Sbjct: 239 FSTGIRPRDKLATQCGLDVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVFG------L 292
Query: 291 GTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKF 350
+MA+VA +HI G + F +A +L +++G GI G+
Sbjct: 293 VAPGYKMAQVAVDHILGSENAFEGADLSAKLKLLGVDVG------------GIGDAHGRT 340
Query: 351 RGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTL 396
G+ Y K I +LI ++ L+GA +VG +G ++ L
Sbjct: 341 PGARSYVYLDESKEIYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQL 386
>gb|AAC78818.1| (AF060809) NADH oxidase [Brachyspira pilosicoli]
Length = 422
Score = 187 bits (469), Expect = 3e-46
Identities = 125/418 (29%), Positives = 212/418 (49%), Gaps = 19/418 (4%)
Query: 11 AGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFPNEFYEKQK 70
AG+ A L+ D +++ + + + C + + G +E P+ + E + +
Sbjct: 1 AGTWAAKTLKATDPNCQVVTYDRNDNISFLACGIALWVGGVVEDPKGLFYASPEGLKSEG 60
Query: 71 IKMMLGVEAKKID-RERKVVITD-----KGEVPYDKLVLATGSKAFIPPIKGVENEG--- 121
I++ +G E KID +K+ + + + E YDKL+LATGS PPI+G++ EG
Sbjct: 61 IEVYMGHEVTKIDWANKKMTVKELKTGKEFEDNYDKLILATGSWPVTPPIEGLKQEGTTY 120
Query: 122 -----VFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLE 176
+F K + I I K K+ +V+GAG IG+E EAF G EV+++E +
Sbjct: 121 GLKKGIFFSKLYQQGQDIINEIAKPEVKRVMVVGAGYIGVELIEAFKNHGKEVILMEAMP 180
Query: 177 HLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGDETVEADLVLVAT 235
++ DK++ +K +++ G++ G V + G+ V+ V + + D+V+++
Sbjct: 181 RVMANYFDKEITDEAEKRIKDAGIELHLGETVKKFEGDDRVKKVVTDKGSYDVDMVVMSV 240
Query: 236 GVRANVDLAKDAGLEV--NRGIVVNEYLQTS-DPDIYAIGDCAEVIDAVTGKRTLSQLGT 292
G R N +L KD LE N IVV+ +++S D ++YAIGDC+ V + L T
Sbjct: 241 GFRPNSELYKDY-LETLPNGAIVVDTTMKSSKDENVYAIGDCSSVYSCSSKSHEYIALAT 299
Query: 293 SAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRG 352
+AVRM VAA +I GK V + + +F + + G +EE AK++G+ V FR
Sbjct: 300 NAVRMGIVAANNILGKKVNYCGTQGSNAICVFGYNMASTGWSEETAKKKGLKVKSNFFRD 359
Query: 353 STKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIA 410
+ +PE+ P + + VK+++ + GRL+GAQI I S V+D A
Sbjct: 360 AERPEFMPTYEDVLVKIVYEESTGRLLGAQIASKHNHAEAIHAFSLAIANEMTVQDFA 417
>sp|P08201|NIRB_ECOLI NITRITE REDUCTASE [NAD(P)H] LARGE SUBUNIT >gi|7466664|pir||H65130
nitrite reductase (NADH) (EC 1.6.6.4) - Escherichia coli
>gi|606299|gb|AAA58162.1| (U18997) NADH-nitrate
oxidoreductase apoprotein [Escherichia coli]
>gi|1789765|gb|AAC76390.1| (AE000412) nitrite reductase
(NAD(P)H) subunit [Escherichia coli K12]
Length = 847
Score = 187 bits (469), Expect = 3e-46
Identities = 134/406 (33%), Positives = 204/406 (50%), Gaps = 33/406 (8%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKA--EIIVIGKEPTMQYSPCALPHVISGTIEKPEDV 58
+R+ +IG+G G F L A +I V +EP + Y L S E++
Sbjct: 4 VRLAIIGNGMVGHRFIEDLLDKSDAANFDITVFCEEPRIAYDRVHLSSYFSH--HTAEEL 61
Query: 59 IVFPNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGE-VPYDKLVLATGSKAFIPPIKGV 117
+ FYEK IK+++G A I+R+ KV+ + G V YDKL++ATGS +IPPIKG
Sbjct: 62 SLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKGS 121
Query: 118 ENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEH 177
+ + F ++++D+ I+ R K+ V+G GL+GLE A A LG+E V+E
Sbjct: 122 DTQDCFVYRTIEDLNAIESCA--RRSKRGAVVGGGLLGLEAAGALKNLGIETHVIEFAPM 179
Query: 178 LLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKI-----GDETVEADLVL 232
L+ LD+ +++ +E GV+ EI+ VEA K G E +E D ++
Sbjct: 180 LMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSE-LEVDFIV 238
Query: 233 VATGVRANVDLAKDAGLEV--NRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQL 290
+TG+R LA GL+V GIV+N+ QTSDPDIYAIG+CA + V G L
Sbjct: 239 FSTGIRPRDKLATQCGLDVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVFG------L 292
Query: 291 GTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKF 350
+MA+VA +HI G + F +A +L +++G GI G+
Sbjct: 293 VAPGYKMAQVAVDHILGSENAFEGADLSAKLKLLGVDVG------------GIGDAHGRT 340
Query: 351 RGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTL 396
G+ Y K I +LI ++ L+GA +VG +G ++ L
Sbjct: 341 PGARSYVYLDESKEIYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQL 386
>dbj|BAA74793.1| (AB017192) nitrate reductase NADH oxydase subunit [Clostridium
perfringens]
Length = 407
Score = 186 bits (467), Expect = 5e-46
Identities = 117/332 (35%), Positives = 192/332 (57%), Gaps = 23/332 (6%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
MR +V+G+ AG + A LR+LD+ AEII++ K+ + YS C L H ISG + + +
Sbjct: 1 MRYIVVGASAAGISGAKTLRELDKDAEIILVSKDENV-YSRCILHHYISG--HRDIEALD 57
Query: 61 FPN-EFYEKQKIKMMLGVEAKKIDRERKVVITDKGE-VPYDKLVLATGSKAFIPPIKGV- 117
F + +F+EK I+ G+E K ID V++ GE + YDK++LATG+ AFIPP++ +
Sbjct: 58 FTDRDFFEKYNIEWKKGLEVKAIDDREHVIVLSNGESLKYDKILLATGASAFIPPVENLR 117
Query: 118 ENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEH 177
E + V L++L+D +IKE K K VV+GAGL+G++ A + V +VE+ +
Sbjct: 118 EAKNVVGLRNLEDAIKIKEEAEK--VKNVVVLGAGLVGIDAIAGLAFKDLNVTLVEMGDR 175
Query: 178 LLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEII----GNPVEAVKIGDETVEADLVLV 233
+LP LDK +S +K E+ GVK + GV +++ NP + E + +L++V
Sbjct: 176 VLPIQLDKYASSKYEKRFEDAGVKLKLGVRAEKVLIDENKNPKALLINTGEEIPCELIIV 235
Query: 234 ATGVRANVDLAKDAGLEVNR-GIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGT 292
ATGVR+NV KD+ +E +R G+++NE +T+ D+Y GD +TG+ + +
Sbjct: 236 ATGVRSNVAFLKDSSIETDRFGLIINEKGETNARDVYGAGD-------ITGR---NPIWP 285
Query: 293 SAVRMAKVAAEHIAGKDVKFRPVFNTAITELF 324
+AV+ +AA ++ G ++ F + T F
Sbjct: 286 TAVKEGIIAANNMVGNEIFMEDFFGSKNTMNF 317
>gb|AAC78819.1| (AF060810) NADH oxidase [Serpulina intermedia]
Length = 415
Score = 185 bits (466), Expect = 6e-46
Identities = 121/391 (30%), Positives = 205/391 (51%), Gaps = 19/391 (4%)
Query: 11 AGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFPNEFYEKQK 70
AG+ L+ D +++ + + + C + G ++ P+ + E +
Sbjct: 1 AGTWAVKTLKATDPNCQVVTYDRNDNISFLACGIALWXGGVVKDPKGLFYANPEGLTSEG 60
Query: 71 IKMMLGVEAKKID-RERKVVITD-----KGEVPYDKLVLATGSKAFIPPIKGVENEG--- 121
I++ +G + KID +K+ + + + E YDKL+LATGS PPI+G++ EG
Sbjct: 61 IEVHMGHDVTKIDWANKKLHVKELKTGKEFEDNYDKLILATGSWPVTPPIEGLKQEGTTY 120
Query: 122 -----VFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLE 176
+F K + I E + K KK +V+GAG IG+E EAF G EV+++E L
Sbjct: 121 GLKKGIFFSKLYQQGQEIIEELKKPEVKKVMVVGAGYIGVELIEAFKNHGKEVILMEALP 180
Query: 177 HLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGDETVEADLVLVAT 235
++ DK++ +K ++E G++ G V + G+ V+ V + + D+V+++
Sbjct: 181 RVMGNYFDKEITDEAEKRIKEAGIEMHLGETVKKFEGDDRVKKVITDKGSYDVDMVVMSV 240
Query: 236 GVRANVDLAKDAGLEV--NRGIVVNEYLQTS-DPDIYAIGDCAEVIDAVTGKRTLSQLGT 292
G + N DL KD LE N I+V+ ++TS DPD+YAIGDCA V + L T
Sbjct: 241 GFKPNSDLYKDY-LETLPNGAIIVDTTMKTSKDPDVYAIGDCASVYSCSSKNNEYIALAT 299
Query: 293 SAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRG 352
+AVRM VAA +I GK V + + +F + + G +EE AK++G+ V +
Sbjct: 300 NAVRMGIVAANNILGKKVNYCGTQGSNAICVFGYNMASTGWSEETAKKKGLKVKSNFVKD 359
Query: 353 STKPEYYPGGKPITVKLIFRKEEGRLIGAQI 383
+ +PE+ P + + VK+I+ ++ GR++GAQI
Sbjct: 360 AERPEFMPTYEDVLVKIIYMEDTGRIVGAQI 390
>sp|P42435|NASD_BACSU NITRITE REDUCTASE [NAD(P)H] >gi|2127153|pir||I40029 nitrite
reductase (NADH) (EC 1.6.6.4) nasD - Bacillus subtilis
>gi|710020|dbj|BAA06354.1| (D30689) subunit of nitrite
reductase [Bacillus subtilis]
>gi|1805402|dbj|BAA08964.1| (D50453) subunit of nitrite
reductase [Bacillus subtilis]
>gi|2632616|emb|CAB12124.1| (Z99105) assimilatory
nitrite reductase (subunit) [Bacillus subtilis]
Length = 805
Score = 185 bits (465), Expect = 8e-46
Identities = 113/314 (35%), Positives = 170/314 (53%), Gaps = 13/314 (4%)
Query: 2 RVVVIGSGTAGSN-FALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
++V++G+G AG L + +I + G EP Y+ L V+ G + +D+ +
Sbjct: 5 QLVLVGNGMAGVRAIEEILSVAKDEFQITIFGAEPHPNYNRILLSKVLQGDTDI-KDITL 63
Query: 61 FPNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGEV-PYDKLVLATGSKAFIPPIKGVEN 119
++YE+ I++ K+D E K VITD + PYD+L+LATGS FI PI G +
Sbjct: 64 NDWDWYEENNIQLYTNETVIKVDTENKTVITDADRIQPYDELILATGSVPFILPIPGADK 123
Query: 120 EGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLL 179
+GV + + D + + KKA VIG GL+GLE A LGM+V V+ L L+
Sbjct: 124 KGVTAFRDIKDTDTM--LAASKQYKKAAVIGGGLLGLEAARGLLNLGMDVSVIHLAPFLM 181
Query: 180 PTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGDET-VEADLVLVATGV 237
LD ++Q +E+ G+ F EI+G+ VE ++ D T +EADLV++A G+
Sbjct: 182 ERQLDATAGRLLQNELEKQGMTFLLEKQTEEIVGDDRVEGLRFKDGTSIEADLVVMAVGI 241
Query: 238 RANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRM 297
R N L ++G+ VNRGI+VN+Y+QT P IYA+G+CAE G L
Sbjct: 242 RPNTTLGAESGIPVNRGIIVNDYMQTEIPHIYAVGECAEHRGIAYG------LVAPLYEQ 295
Query: 298 AKVAAEHIAGKDVK 311
AKV A+H+ G + K
Sbjct: 296 AKVLAKHMCGIETK 309
>gb|AAC78813.1| (AF060804) NADH oxidase [Brachyspira innocens]
Length = 413
Score = 185 bits (465), Expect = 8e-46
Identities = 120/407 (29%), Positives = 206/407 (50%), Gaps = 19/407 (4%)
Query: 19 LRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFPNEFYEKQKIKMMLGVE 78
L+ D +++ + + + C + + G ++ P+ + E + + I + +G +
Sbjct: 6 LKATDPNCQVVTYDRNDNISFLACGIALWVGGVVKDPKGLFYASPESLKAEGIDVYMGHD 65
Query: 79 AKKIDRERKVVITDKGEVP------YDKLVLATGSKAFIPPIKGVENEG--------VFT 124
KID K + + + YDKL+LATGS PPI+G+ EG +F
Sbjct: 66 VTKIDWANKKLHVKELKTGKEFDDNYDKLILATGSWPVTPPIEGLMQEGTEYGLKKGIFF 125
Query: 125 LKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLD 184
K + I + I K KK +V+GAG IG+E EAF G EV+++E + ++ D
Sbjct: 126 SKLFQQGQEIIDEIAKPEVKKVMVVGAGYIGVELIEAFKNHGKEVILMEAMPRVMANYFD 185
Query: 185 KDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGDETVEADLVLVATGVRANVDL 243
K++ +K ++E G++ G V + G+ V+ V + + D+V+++ G R N +L
Sbjct: 186 KEITDEAEKRIKEAGIEMHLGETVKKFEGDDRVKKVITDKGSYDVDMVVMSVGFRPNSEL 245
Query: 244 AKDAGLEV--NRGIVVNEYLQTS-DPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKV 300
KD LE N I V+ ++T+ DP+++AIGDCA V +GK L T+AVRM V
Sbjct: 246 YKDY-LETLPNGAIKVDTTMKTTKDPNVFAIGDCATVYSRASGKEEYIALATNAVRMGIV 304
Query: 301 AAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYP 360
AA + GK V++ + +F + + G +EE AK++G+ V F+ + +PE+ P
Sbjct: 305 AANNALGKHVEYCGTQGSNAICVFGYNMASTGWSEETAKKKGLKVKSNFFKDAERPEFMP 364
Query: 361 GGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVE 407
+ + VK+I+ ++ R++GAQI I S Q G V+
Sbjct: 365 SYEDVLVKVIYEEDTRRMVGAQIASNHNHAEAIHAFSLAIQNGMTVD 411
>gb|AAC78815.1| (AF060806) NADH oxidase [Brachyspira pilosicoli]
Length = 423
Score = 185 bits (465), Expect = 8e-46
Identities = 124/418 (29%), Positives = 213/418 (50%), Gaps = 19/418 (4%)
Query: 11 AGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFPNEFYEKQK 70
AG+ A L+ D +++ + + + C + + G ++ P+ + E + +
Sbjct: 1 AGTWAAKTLKATDPNCQVVTYDRNDNISFLACGIALWVGGVVKDPKGLFYASPEGLKSEG 60
Query: 71 IKMMLGVEAKKID-RERKVVITD-----KGEVPYDKLVLATGSKAFIPPIKGVENEG--- 121
I++ +G E KID +K+ + + + E YDKL+LATGS PPI+G++ EG
Sbjct: 61 IEVYMGHEVTKIDWANKKMTVKELKTGKEFEDNYDKLILATGSWPVTPPIEGLKQEGTTY 120
Query: 122 -----VFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLE 176
+F K + I + I K K+ +V+GAG IG+E EAF G EV+++E +
Sbjct: 121 GLKKGIFFSKLYQQGQDIIDEIAKPEVKRVMVVGAGYIGVELIEAFKNHGKEVILMEAMP 180
Query: 177 HLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGDETVEADLVLVAT 235
++ DK++ +K +++ G++ G V + G+ V+ V + + D+V+++
Sbjct: 181 RVMANYFDKEITDEAEKRIKDAGIELHLGETVKKFEGDDRVKKVVTDKGSYDVDMVVMSV 240
Query: 236 GVRANVDLAKDAGLEV--NRGIVVNEYLQTS-DPDIYAIGDCAEVIDAVTGKRTLSQLGT 292
G R N +L KD LE N IVV+ +++S D ++YAIGDC+ V + L T
Sbjct: 241 GFRPNSELYKDY-LETLPNGAIVVDTTMKSSKDENVYAIGDCSSVYSCSSKSHEYIALAT 299
Query: 293 SAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRG 352
+AVRM VAA +I GK V + + +F + + G +EE AK++G+ V FR
Sbjct: 300 NAVRMGIVAANNILGKKVNYCGTQGSNAICVFGYNMASTGWSEETAKKKGLKVKSNFFRD 359
Query: 353 STKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIA 410
+ +PE+ P + + VK+++ + GRL+GAQI I S V+D A
Sbjct: 360 AERPEFMPTYEDVLVKIVYEEGTGRLLGAQIASKHNHAEAIHAFSLAIANEMTVQDFA 417
>gb|AAC78817.1| (AF060808) NADH oxidase [Brachyspira pilosicoli]
Length = 421
Score = 185 bits (465), Expect = 8e-46
Identities = 124/418 (29%), Positives = 213/418 (50%), Gaps = 19/418 (4%)
Query: 11 AGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFPNEFYEKQK 70
AG+ A L+ D +++ + + + C + + G ++ P+ + E + +
Sbjct: 1 AGTWAAKTLKATDPNCQVVTYDRNDNISFLACGIALWVGGVVKDPKGLFYASPEGLKSEG 60
Query: 71 IKMMLGVEAKKID-RERKVVITD-----KGEVPYDKLVLATGSKAFIPPIKGVENEG--- 121
I++ +G E KID +K+ + + + E YDKL+LATGS PPI+G++ EG
Sbjct: 61 IEVYMGHEVTKIDWANKKMTVKELKTGKEFEDNYDKLILATGSWPVTPPIEGLKQEGTTY 120
Query: 122 -----VFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLE 176
+F K + I + I K K+ +V+GAG IG+E EAF G EV+++E +
Sbjct: 121 GLKKGIFFSKLYQQGQDIIDEIAKPEVKRVMVVGAGYIGVELIEAFKNHGKEVILMEAMP 180
Query: 177 HLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGDETVEADLVLVAT 235
++ DK++ +K +++ G++ G V + G+ V+ V + + D+V+++
Sbjct: 181 RVMANYFDKEITDEAEKRIKDAGIELHLGETVKKFEGDDRVKKVVTDKGSYDVDMVVMSV 240
Query: 236 GVRANVDLAKDAGLEV--NRGIVVNEYLQTS-DPDIYAIGDCAEVIDAVTGKRTLSQLGT 292
G R N +L KD LE N IVV+ +++S D ++YAIGDC+ V + L T
Sbjct: 241 GFRPNSELYKDY-LETLPNGAIVVDTTMKSSKDENVYAIGDCSSVYSCSSKSHEYIALAT 299
Query: 293 SAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRG 352
+AVRM VAA +I GK V + + +F + + G +EE AK++G+ V FR
Sbjct: 300 NAVRMGIVAANNILGKKVNYCGTQGSNAICVFGYNMASTGWSEETAKKKGLKVKSNFFRD 359
Query: 353 STKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIA 410
+ +PE+ P + + VK+++ + GRL+GAQI I S V+D A
Sbjct: 360 AERPEFMPTYEDVLVKIVYEEGTGRLLGAQIASKHNHAEAIHAFSLAIANEMTVQDFA 417
>gb|AAC78825.1| (AF060816) NADH oxidase [Brachyspira aalborgi]
Length = 418
Score = 185 bits (464), Expect = 1e-45
Identities = 122/417 (29%), Positives = 214/417 (51%), Gaps = 19/417 (4%)
Query: 11 AGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFPNEFYEKQK 70
AG+ A L+ +D ++ + + + C + + G ++ P+ + E + +
Sbjct: 3 AGTWAAKTLKAVDSSTTVVTYDRNDNISFLACGIALWVGGVVKDPKGLFYANPEGLKSEG 62
Query: 71 IKMMLGVEAKKID------RERKVVITDKGEVPYDKLVLATGSKAFIPPIKGVEN----- 119
I + +G E KID R+++ + E YDKL+LATGS PPI+G+
Sbjct: 63 IDVHMGHEVVKIDWANRKLTVRELITGKEFEDNYDKLILATGSWPVTPPIEGLMQPGTKY 122
Query: 120 ---EGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLE 176
EG+F K + I + I + K+ +V+GAG IG+E EAF G EV+++E +
Sbjct: 123 GLKEGIFFSKLFQQGQEIIDEIKRPEVKRVMVVGAGYIGVELVEAFKNHGKEVILMEAMP 182
Query: 177 HLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGDETVEADLVLVAT 235
++ DK++ +K ++E G++ G V + G+ V+ V + + D+V+++
Sbjct: 183 RVMANYFDKEITDEAEKRIKEAGIELHLGETVKKFEGSVRVQKVVTDKGSYDVDMVVMSV 242
Query: 236 GVRANVDLAKDAGLEV--NRGIVVNEYLQTS-DPDIYAIGDCAEVIDAVTGKRTLSQLGT 292
G R N +L KD LE N IVV+ ++T+ DP+++AIGDC+ V + K+ L T
Sbjct: 243 GFRPNSELYKDY-LETLPNGAIVVDTTMKTTKDPNVFAIGDCSTVYSRASEKQDYIALAT 301
Query: 293 SAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRG 352
+AVRM VAA + G+ V++ + +F + + G +EE AK++G++V F+
Sbjct: 302 NAVRMGIVAANNALGRHVEYCGTQGSNAICVFGYNMASTGWSEETAKKKGLNVKSNFFKD 361
Query: 353 STKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDI 409
+ +PE+ P + + VK+I+ + R+IGAQI I S Q G V+ +
Sbjct: 362 AERPEFMPTYEDVLVKIIYEEGSRRMIGAQIASKHNHAEAIHAFSLAIQNGMTVDHL 418
>pir||S10791 nitrite reductase nirB - Escherichia coli
Length = 839
Score = 184 bits (462), Expect = 2e-45
Identities = 133/406 (32%), Positives = 203/406 (49%), Gaps = 33/406 (8%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKA--EIIVIGKEPTMQYSPCALPHVISGTIEKPEDV 58
+R+ +IG+G G F L A +I V +EP + Y L S E++
Sbjct: 4 VRLAIIGNGMVGHRFIEDLLDKSDAANFDITVFCEEPRIAYDRVHLSSYFSH--HTAEEL 61
Query: 59 IVFPNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGE-VPYDKLVLATGSKAFIPPIKGV 117
+ FYEK IK+++G A I+R+ KV+ + G V YDKL++ATGS +IPPIKG
Sbjct: 62 SLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKGS 121
Query: 118 ENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEH 177
+ + F ++++D+ I+ R K+ V+G GL+GLE A A LG+E V+E
Sbjct: 122 DTQDCFVYRTIEDLNAIESCA--RRSKRGAVVGGGLLGLEAAGALKNLGIETHVIEFAPM 179
Query: 178 LLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKI-----GDETVEADLVL 232
L+ LD+ +++ +E GV+ I+ VEA K G E +E D ++
Sbjct: 180 LMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLGIVQEGVEARKTMRFADGSE-LEVDFIV 238
Query: 233 VATGVRANVDLAKDAGLEV--NRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQL 290
+TG+R LA GL+V GIV+N+ QTSDPDIYAIG+CA + V G L
Sbjct: 239 FSTGIRPRDKLATQCGLDVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVFG------L 292
Query: 291 GTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKF 350
+MA+VA +HI G + F +A +L +++G GI G+
Sbjct: 293 VAPGYKMAQVAVDHILGSENAFEGADLSAKLKLLGVDVG------------GIGDAHGRT 340
Query: 351 RGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTL 396
G+ Y K I +LI ++ L+GA +VG +G ++ L
Sbjct: 341 PGARSYVYLDESKEIYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQL 386
>gb|AAC78816.1| (AF060807) NADH oxidase [Brachyspira pilosicoli]
Length = 407
Score = 183 bits (460), Expect = 3e-45
Identities = 117/383 (30%), Positives = 202/383 (52%), Gaps = 19/383 (4%)
Query: 19 LRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFPNEFYEKQKIKMMLGVE 78
L+ D +++ + + + C + + G ++ P+ + E + + I++ +G E
Sbjct: 7 LKATDPNCQVVTYDRNDNISFLACGIALWVGGVVKDPKGLFYASPEGLKSEGIEVYMGHE 66
Query: 79 AKKID-RERKVVITD-----KGEVPYDKLVLATGSKAFIPPIKGVENEG--------VFT 124
KID +K+ + + + E YDKL+LATGS PPI+G++ EG +F
Sbjct: 67 VTKIDWANKKMTVKELKTGKEFEDNYDKLILATGSWPVTPPIEGLKQEGTTYGLKKGIFF 126
Query: 125 LKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLD 184
K + I I K KK +V+GAG IG+E EAF G EV+++E + ++ D
Sbjct: 127 SKLYQQGQDIINEIAKPEVKKVMVVGAGYIGVELIEAFKNHGKEVILMEAMPRVMANYFD 186
Query: 185 KDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGDETVEADLVLVATGVRANVDL 243
K++ +K +++ G++ G V + G+ V+ V + + D+V+++ G R N +L
Sbjct: 187 KEITDEAEKRIKDAGIELHLGETVKKFEGDDRVKKVVTDKGSYDVDMVVMSVGFRPNSEL 246
Query: 244 AKDAGLEV--NRGIVVNEYLQTS-DPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKV 300
KD LE N IVV+ +++S D ++YAIGDC+ V + L T+AVRM V
Sbjct: 247 YKDY-LETLPNGAIVVDTTMKSSKDENVYAIGDCSSVYSCSSKSHEYIALATNAVRMGIV 305
Query: 301 AAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYP 360
AA +I GK V + + +F + + G +EE AK++G+ V FR + +PE+ P
Sbjct: 306 AANNILGKKVNYCGTQGSNAICVFGYNMASTGWSEETAKKKGLKVKSNFFRDAERPEFMP 365
Query: 361 GGKPITVKLIFRKEEGRLIGAQI 383
+ + VK+++ + GRL+GAQI
Sbjct: 366 TYEDVLVKIVYEEGTGRLLGAQI 388
>pir||JC4541 NADH oxidase (H2O-forming) (EC 1.6.-.-) - Streptococcus mutans
>gi|1199958|dbj|BAA08707.1| (D49951) H2O-forming NADH
Oxidase [Streptococcus mutans] >gi|1586930|prf||2205240A
H2O-forming NADH oxidase [Streptococcus mutans]
Length = 457
Score = 181 bits (455), Expect = 1e-44
Identities = 135/452 (29%), Positives = 230/452 (50%), Gaps = 23/452 (5%)
Query: 2 RVVVIGSGTAGSN-FALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
++V++G+ AG+ L + E++V + + + C + I I P+ +
Sbjct: 3 KIVIVGANHAGTAAINTILDNYGSENEVVVFDQNSNISFLGCGMALWIGKQISGPQGLFY 62
Query: 61 FPNEFYEKQ--KIKMMLGVEAKKIDRERKVVITDKGE--VPYDKLVLATGSKAFIPPIKG 116
E E + KI M V A D +R + + E Y+KL+LATGS +PPIKG
Sbjct: 63 ADKESLEAKGAKIYMESPVTAIDYDAKRVTALVNGQEHVESYEKLILATGSTPILPPIKG 122
Query: 117 VE-NEGV----FTLKSLDDVR---RIKEYIGK-----RNPKKAVVIGAGLIGLEGAEAFA 163
EG TLK+L V+ ++ I K +N + V+GAG IG+E AEAF
Sbjct: 123 AAIKEGSRDFEATLKNLQFVKLYQNAEDVINKLQDKSQNLNRIAVVGAGYIGVELAEAFK 182
Query: 164 KLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGN-PVEAVKIG 222
+LG EV+++++++ L D+D++ ++++N+E+HG++ FG V I G+ VE +
Sbjct: 183 RLGKEVILIDVVDTCLAGYYDQDLSEMMRQNLEDHGIELAFGETVKAIEGDGKVERIVTD 242
Query: 223 DETVEADLVLVATGVRANVDLAKDAGLEV--NRGIVVNEYLQTSDPDIYAIGDCAEVIDA 280
+ + D+V++A G R N L +A L+ N +V++ +TS PD+YAIGDCA V D
Sbjct: 243 KASHDVDMVILAVGFRPNTALG-NAKLKTFRNGAFLVDKKQETSIPDVYAIGDCATVYDN 301
Query: 281 VTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKR 340
L ++A+R VA + AG ++ V + +F L + + G+T+E+AKR
Sbjct: 302 AINDTNYIALASNALRSGIVAGHNAAGHKLESLGVQGSNGISIFGLNMVSTGLTQEKAKR 361
Query: 341 EGIDVVVGKFRGSTKPEYYP-GGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSAL 399
G + V F K + P+T+K+++ K+ ++GAQ+ E + I S
Sbjct: 362 FGYNPEVTAFTDFQKASFIEHDNYPVTLKIVYDKDSRLVLGAQMASKEDMSMGIHMFSLA 421
Query: 400 AQMGAKVEDIAYLETAYAPPISPTIDPITVAA 431
Q +E +A L+ + P + + +T AA
Sbjct: 422 IQEKVTIERLALLDYFFLPHFNQPYNYMTKAA 453
>sp|P42433|NASB_BACSU ASSIMILATORY NITRATE REDUCTASE ELECTRON TRANSFER SUBUNIT
>gi|2127152|pir||I40027 nitrite reductase (NADH) (EC
1.6.6.4) nasB - Bacillus subtilis
>gi|710018|dbj|BAA06352.1| (D30689) electolon trasporter
subunit of nitrate reductase [Bacillus subtilis]
>gi|1805404|dbj|BAA08966.1| (D50453) electron transfer
subunit of nitrate reductase [Bacillus subtilis]
>gi|2632618|emb|CAB12126.1| (Z99105) assimilatory
nitrate reductase (electron transfer subunit) [Bacillus
subtilis]
Length = 770
Score = 180 bits (453), Expect = 2e-44
Identities = 113/349 (32%), Positives = 193/349 (54%), Gaps = 14/349 (4%)
Query: 2 RVVVIGSGTAGSNFALFLRKLDRKA-EIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
R+V+ G+G AG + KL+R EI++ G EP Y+ L V+ G +D+ +
Sbjct: 5 RLVLAGNGMAGIRCIEEVLKLNRHMFEIVIFGSEPHPNYNRILLSSVLQGEASL-DDITL 63
Query: 61 FPNEFYEKQKIKMMLGVEAKKIDRERKVVITD-KGEVPYDKLVLATGSKAFIPPIKGVEN 119
++Y+K I + G +ID +++ VITD K + YDKL++ATGS I PI G +
Sbjct: 64 NSKDWYDKHGITLYTGETVIQIDTDQQQVITDRKRTLSYDKLIVATGSSPHILPIPGADK 123
Query: 120 EGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLL 179
+GV+ ++++D + + ++ +KA VIGAGL+GLE A LGM+V V+ ++
Sbjct: 124 KGVYGFRTIEDCQALMNMA--QHFQKAAVIGAGLLGLEAAVGLQHLGMDVSVIHHSAGIM 181
Query: 180 PTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIG-NPVEAVKIGD-ETVEADLVLVATGV 237
LD+ A ++Q +E+ G+ F I G + + D +++ADL+++A GV
Sbjct: 182 QKQLDQTAARLLQTELEQKGLTFLLEKDTVSISGATKADRIHFKDGSSLKADLIVMAAGV 241
Query: 238 RANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRM 297
+ N++LA AG++VNRGI+VN+++QTS+P+IYA+G+CAE V G L
Sbjct: 242 KPNIELAVSAGIKVNRGIIVNDFMQTSEPNIYAVGECAEHNGTVYG------LVAPLYEQ 295
Query: 298 AKVAAEHIAGKDV-KFRPVFNTAITELFDLEIGTFGMTEERAKREGIDV 345
K A HI G +++ +A ++ +++ + G +E + I +
Sbjct: 296 GKALASHICGVPCEEYQGSAPSAALKIAGIDVWSAGKIQEDERTTSIKI 344
>pir||S04349 nitrate reductase (NADH) (EC 1.6.6.1) - Escherichia coli
Length = 838
Score = 180 bits (451), Expect = 4e-44
Identities = 132/406 (32%), Positives = 202/406 (49%), Gaps = 33/406 (8%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKA--EIIVIGKEPTMQYSPCALPHVISGTIEKPEDV 58
+R+ +IG+G G F L A +I V +EP + Y L S E++
Sbjct: 4 VRLAIIGNGMVGHRFIEDLLDKSDAANFDITVFCEEPRIAYDRVHLSSYFSH--HTAEEL 61
Query: 59 IVFPNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGE-VPYDKLVLATGSKAFIPPIKGV 117
+ FYEK IK+++G A I+R+ KV+ + G V YDKL++ATGS +IPPIKG
Sbjct: 62 SLVREGFYEKHGIKVLVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKGS 121
Query: 118 ENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEH 177
+ + F ++++D+ I+ R K+ V+G G +GLE A A LG+E V+E
Sbjct: 122 DTQDCFVYRTIEDLNAIESCA--RRSKRGAVVGGGPLGLEAAGALKNLGIETHVIESAPM 179
Query: 178 LLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKI-----GDETVEADLVL 232
L+ LD+ +++ +E GV+ I+ VEA K G E +E D ++
Sbjct: 180 LMAERLDRMDDERLRRKIESMGVRVHTSKNTLGIVQEGVEARKTMRFADGSE-LEVDFIV 238
Query: 233 VATGVRANVDLAKDAGLEV--NRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQL 290
+TG+R LA GL+V GIV+N+ QTSDPDIYAIG+CA + V G L
Sbjct: 239 FSTGIRPRDKLATQCGLDVAPRGGIVINDSCQTSDPDIYAIGECASWNNRVFG------L 292
Query: 291 GTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKF 350
+MA+VA +HI G + F +A +L +++G GI G+
Sbjct: 293 VAPGYKMAQVAVDHILGSENAFEGADLSAKLKLLGVDVG------------GIGDAHGRT 340
Query: 351 RGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTL 396
G+ Y K I +LI ++ L+GA +VG +G ++ L
Sbjct: 341 PGARSYVYLDESKEIYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQL 386
>gb|AAK41472.1| Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase
component, probable (todA) [Sulfolobus solfataricus]
Length = 404
Score = 179 bits (450), Expect = 5e-44
Identities = 116/334 (34%), Positives = 187/334 (55%), Gaps = 12/334 (3%)
Query: 4 VVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYS-PCALPHVISGTIEKPEDVIVFP 62
++IGSG AG N L ++ + II+I + Y P + G +EK D++ F
Sbjct: 6 LIIGSGIAGYNALKELLQIKPNSRIIMITSDKYYPYDRPPLSKDYLKGKLEK--DMLFFE 63
Query: 63 NE-FYEKQKIKMMLGVEAKKIDRERKVVITDKGEV-PYDKLVLATGSKAFIPPIKGVENE 120
++ FY++ +++ML ++ID K I + G V +DK +++TG + I G EN
Sbjct: 64 SDDFYKRDNLEVMLNKSVERIDANLKEAILNDGSVISFDKALISTGGRPRRLNIPGSEN- 122
Query: 121 GVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLP 180
L+SLDD RI+E K K A++IGAG IG+E A + LG++ VVE++ ++
Sbjct: 123 -ALYLRSLDDADRIREAASKG--KNALIIGAGFIGVEVASSLITLGVKTTVVEVMPYIWN 179
Query: 181 TMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKIGDETVEADLVLVATGVRAN 240
T +D+ ++ ++Q+ +E G+ F V EI G A +EAD+ L+A G+ N
Sbjct: 180 TFVDEKVSRVIQQYLESKGINFILNESVKEIQGKI--ATTSSGRKIEADMFLIAVGISPN 237
Query: 241 VDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKV 300
V+LA+ +G++V+ GIVVNEYL+TS DIYA GD A + D GKR + +A K+
Sbjct: 238 VELAQRSGMQVDNGIVVNEYLETSARDIYAAGDIANIFDPREGKRKRIEHWNNAEYTGKL 297
Query: 301 AAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMT 334
AA ++AG + ++ +++FDL I + G T
Sbjct: 298 AARNMAGSREAYN-FISSIWSDIFDLHIESAGET 330
>pir||F71265 probable NADH oxidase - syphilis spirochete
>gi|3323238|gb|AAC65876.1| (AE001260) NADH oxidase
[Treponema pallidum]
Length = 445
Score = 179 bits (449), Expect = 6e-44
Identities = 123/440 (27%), Positives = 215/440 (47%), Gaps = 9/440 (2%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
M++V+IG+ AG+ L L E++V + + + C + I G I E +
Sbjct: 1 MKIVIIGANHAGTACVNCLTDLTTTNEVVVFDRNNNISFLGCGMALWIGGQIRGSEGLFY 60
Query: 61 FPNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGE-----VPYDKLVLATGSKAFIPPIK 115
E EK+ ++ + + +ID K V + YDKL++ATGS IP I
Sbjct: 61 ANKEQLEKKGARVSMESDITRIDFASKKVYGTARDGSAIAESYDKLIIATGSLPIIPKID 120
Query: 116 GVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELL 175
G++ E V +K D + + + + + K VIGAG IG+E AEAF + +V +++ +
Sbjct: 121 GMDLENVQRIKLFQDAEAVIKKLEQPSIKNIAVIGAGYIGVELAEAFERHQKKVTLIDAM 180
Query: 176 EHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKIGDETVE--ADLVLV 233
+ L D +++ +N+ H + FG V ++ G+ + V + + E AD+V+V
Sbjct: 181 DSSLSNYYDASFRALMDENLRSHHITLAFGQKVQKLRGSNGKVVAVVTDKGEYPADMVMV 240
Query: 234 ATGVRANVDLAK-DAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGT 292
G N L K + N V+ +TS D+YAIGDCA V D G+ + L T
Sbjct: 241 CIGFSPNTALGKNEVRTFANGAYAVDLKQETSVKDVYAIGDCATVFDNSLGQTSYIALAT 300
Query: 293 SAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRG 352
+A+R VAA + AG ++ V + ++DL++ + G+T+ERA R G++V V F
Sbjct: 301 NAMRSGIVAAHNAAGFPLEGIGVQGSNGINIYDLKMVSTGVTQERAARMGLEVEVTDFED 360
Query: 353 STKPEYYP-GGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAY 411
S P + P+ ++++F K+ ++GAQ+ + I S Q ++ +
Sbjct: 361 SQLPAFMEVDNHPVKIRIVFDKKTRVIVGAQMASRHDMSMGIHLFSLAIQERVTIDKLKL 420
Query: 412 LETAYAPPISPTIDPITVAA 431
L+ + P + + +T+AA
Sbjct: 421 LDMFFLPHFNKPYNYVTMAA 440
>gb|AAC26485.2| (AF014458) NADH oxidase [Streptococcus pneumoniae]
Length = 459
Score = 178 bits (447), Expect = 1e-43
Identities = 130/453 (28%), Positives = 228/453 (49%), Gaps = 24/453 (5%)
Query: 2 RVVVIGSGTAGSN-FALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
++VV+G+ AG+ L + EI+V + + + C + I I+ E +
Sbjct: 3 KIVVVGANHAGTACINTMLDNFGNENEIVVFDQNSNISFLGCGMALWIGEQIDGAEGLFY 62
Query: 61 FPNEFYEKQKIKMMLGVEAKKIDRERKVVITD----KGEVPYDKLVLATGSKAFIPPIKG 116
E E + K+ + ID + KVV + + + Y+KL+ ATGS +PPI+G
Sbjct: 63 SDKEKLEAKGAKVYMNSPVLSIDYDNKVVTAEVEGKEHKESYEKLIFATGSTPILPPIEG 122
Query: 117 VE-----NEGVFTLKSLDDVR---RIKEYIGKRNPK-----KAVVIGAGLIGLEGAEAFA 163
VE E TL+++ V+ +E I K + K + V+G G IG+E AEAF
Sbjct: 123 VEIVKGNREFKATLENVQFVKLYQNAEEVINKLSDKSQHLDRIAVVGGGYIGVELAEAFE 182
Query: 164 KLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGN-PVEAVKIG 222
+LG EV++V++++ +L DKD ++ KN+E+H ++ G V I G+ VE +
Sbjct: 183 RLGKEVVLVDIVDTVLNGYYDKDFTQMMAKNLEDHNIRLALGQTVKAIEGDGKVERLITD 242
Query: 223 DETVEADLVLVATGVRANVDLAKDAGLEV--NRGIVVNEYLQTSDPDIYAIGDCAEVIDA 280
E+ + D+V++A G R N LA D +E+ N +V++ +TS P +YA+GDCA V D
Sbjct: 243 KESFDVDMVILAVGFRPNTALA-DGKIELFRNGAFLVDKKQETSIPGVYAVGDCATVYDN 301
Query: 281 VTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKR 340
+ L ++AVR V A + G +++ V + ++ L + + G+T E+AK
Sbjct: 302 ARKDTSYIALASNAVRTGIVGAYNACGHELEGIGVQGSNGISIYGLHMVSTGLTLEKAKA 361
Query: 341 EGIDVVVGKFRGSTKPEYYP-GGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSAL 399
G + F KPE+ + +K++F K+ ++GAQ+V + + + +L
Sbjct: 362 AGYNATETGFNDLQKPEFMKHDNHEVAIKIVFDKDSREILGAQMVSHDIAISMGIHMFSL 421
Query: 400 A-QMGAKVEDIAYLETAYAPPISPTIDPITVAA 431
A Q ++ +A + + P + + IT+AA
Sbjct: 422 AIQEHVTIDKLALTDLFFLPHFNKPYNYITMAA 454
>pir||C83424 assimilatory nitrite reductase large subunit PA1781 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9947761|gb|AAG05170.1|AE004603_10 (AE004603)
assimilatory nitrite reductase large subunit
[Pseudomonas aeruginosa]
Length = 816
Score = 178 bits (447), Expect = 1e-43
Identities = 116/312 (37%), Positives = 173/312 (55%), Gaps = 15/312 (4%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKA-EIIVIGKEPTMQYSPCALPHVISGTIEKPEDVI 59
+++V++G+G AG L KL+ +I V G EP Y+ L V++G + E+++
Sbjct: 4 IKLVMVGNGMAGVRTLEELLKLNSDFYDITVFGAEPHPNYNRILLSPVLAGE-QTFEEIV 62
Query: 60 VFPNEFYEKQKIKMMLGVEAKKIDR-ERKVVITDKGEVPYDKLVLATGSKAFIPPIKGVE 118
+ +Y + IK++L + +IDR R+VV D E YD+L+LATGS FI PI G
Sbjct: 63 LNDLNWYAENGIKLLLDRKVVQIDRLRRRVVAADGSEAEYDRLLLATGSLPFILPIPGNR 122
Query: 119 NEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHL 178
+GV + + D + + + R AVVIG GL+GLE A + GM+V VV L + L
Sbjct: 123 LQGVIGYRDIADTQAMIDCA--RTHSHAVVIGGGLLGLEAANGLKQRGMDVTVVHLSDWL 180
Query: 179 LPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP---VEAVKIGD-ETVEADLVLVA 234
L LD+ ++Q +E G++FR E++ N V AV+ D + + ADLV++A
Sbjct: 181 LERQLDRTAGKLLQGALEARGIRFRLNTQTQELMDNGSGRVCAVQFNDGDVIPADLVVMA 240
Query: 235 TGVRANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSA 294
G+R N +LA+ AG+ NRGI+VN+ LQT DP IYA+G+CA G L
Sbjct: 241 AGIRPNTELAESAGIPCNRGILVNDTLQTYDPRIYAVGECANHRGIAYG------LVAPL 294
Query: 295 VRMAKVAAEHIA 306
AKV A H+A
Sbjct: 295 FEQAKVCANHLA 306
>gb|AAB97073.1| (AF041467) coenzyme A disulfide reductase [Staphylococcus aureus]
Length = 438
Score = 171 bits (430), Expect = 1e-41
Identities = 119/438 (27%), Positives = 214/438 (48%), Gaps = 18/438 (4%)
Query: 2 RVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVF 61
++VV+G+ G+ A +R+LD++++II+ K+ M ++ CALP+VI +E + +
Sbjct: 3 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAY 62
Query: 62 -PNEFYEKQKIKMMLGVEAKKIDRERKVV------ITDKGEVPYDKLVLATGSKAFIPPI 114
P +FY++++I + E I+ ER+ V ++ E YDKL+L+ G+ A
Sbjct: 63 TPEKFYDRKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASA---NS 119
Query: 115 KGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVEL 174
G E++ FTL++L+D I ++I K +V+GAG + LE E + G+ ++
Sbjct: 120 LGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLNERGLHPTLIHR 179
Query: 175 LEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKIGDETVEADLVLVA 234
+ + ++D DM + +++ + +R ++ I GN + K G + D+++
Sbjct: 180 SDK-INKLMDADMNQPILDELDKREIPYRLNEEINAINGNEI-TFKSG-KVEHYDMIIEG 236
Query: 235 TGVRANVDLAKDAGLEVNRG--IVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGT 292
G N + + ++++R I VN+ +T+ P+IYAIGD A L
Sbjct: 237 VGTHPNSKFIESSNIKLDRKGFIPVNDKFETNVPNIYAIGDIATSHYRHVDLPASVPLAW 296
Query: 293 SAVRMAKVAAEHIAGKD-VKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFR 351
A R A + AE IAG D ++F+ I + FD + G+ K+ D + +
Sbjct: 297 GAHRAASIVAEQIAGNDTIEFKGFLGNNIVKFFDYTFASVGVKPNELKQ--FDYKMVEVT 354
Query: 352 GSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAY 411
YYPG P+ +++ + +++ A VG E RI LS V+++
Sbjct: 355 QGAHANYYPGNSPLHLRVYYDTSNRQILRAAAVGKEGADKRIDVLSMAMMNQLTVDELTE 414
Query: 412 LETAYAPPISPTIDPITV 429
E AYAPP S D I +
Sbjct: 415 FEVAYAPPYSHPKDLINM 432
>emb|CAB69774.1| (AL137187) putative nitrite reductase [Streptomyces coelicolor
A3(2)]
Length = 410
Score = 163 bits (409), Expect = 3e-39
Identities = 138/414 (33%), Positives = 209/414 (50%), Gaps = 48/414 (11%)
Query: 2 RVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVF 61
RVVVIG+G AG A L +L A + +G E Y+ L V++G +VI
Sbjct: 6 RVVVIGAGLAGVTLARRLGELGTPA--LTLGDEEHRPYNRVLLAEVLAGRYGP--EVIAL 61
Query: 62 PNEFYEKQKIKMMLGVEAKKIDRE-RKVVITDKGEVPYDKLVLATGSKAFIPPIKGVEN- 119
P +L IDR R V D + YD LVLATGS A +PP++G+
Sbjct: 62 PAP-------AGLLRGRVTGIDRAGRTVRCADGSVIAYDTLVLATGSNAVLPPLRGLFTP 114
Query: 120 -----EGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVEL 174
EGV +++DD + + + R +AVVIG GL+G+ A A A G +V++ +
Sbjct: 115 DHELPEGVHAFRTMDDCLGLSKAV--RPGVRAVVIGGGLLGVSAARALAVRGAQVVLAQQ 172
Query: 175 LEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEI--IGNPVEAVKIGDE-TVEADLV 231
E L+ LD +++V++++E GV+ V ++ +G V +V++GD + ADLV
Sbjct: 173 SERLMERQLDPAASALVRRHLEGLGVEVHTECRVRDVRSVGGAVRSVEMGDGYALGADLV 232
Query: 232 LVATGVRANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTG--KRTLSQ 289
++A GVR LA++AGL V +G++V++ L+TSDP I AIGDCA+ D V G L Q
Sbjct: 233 VLACGVRPRAGLAREAGLAVGKGVLVDDELRTSDPHIRAIGDCAQHADHVYGLAAPALEQ 292
Query: 290 LGTSAVRMAK--VAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVV 347
G A +A+ A H G R A + L++ FG T+ R G DVV
Sbjct: 293 AGVLAELLAEGGTATRHYTGTRALTRLTLTGADSPFAPLDLAAFGETD---PRPGDDVV- 348
Query: 348 GKFRGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQ 401
+ +T+ Y K++ R + RL+G +V G + T+ ALA+
Sbjct: 349 -QLADATRGTYR--------KVVVR--DDRLVGGVLV------GELGTVGALAR 385
>emb|CAB69775.1| (AL137187) putative nitrite reductase large subunit [Streptomyces
coelicolor A3(2)]
Length = 871
Score = 160 bits (401), Expect = 3e-38
Identities = 132/430 (30%), Positives = 198/430 (45%), Gaps = 48/430 (11%)
Query: 3 VVVIGSGTAGSNF--ALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
+V++G G G F AL R L ++V+ +EP Y L SG + PED+ +
Sbjct: 11 IVLVGHGMVGQRFLEALAERGLTGTHRVVVLCEEPRPAYDRVQLTSYFSG--KTPEDLSM 68
Query: 61 FPNEFYEKQKIKMMLGVEAKKIDRERKVVITDKG-EVPYDKLVLATGSKAFIPPIKGVEN 119
F + I++ +G A+ IDRE + V G V YD LVLATGS F+PP+ G +
Sbjct: 69 TDPAFIAEHGIELRVGDPAETIDREARRVTARSGLVVEYDVLVLATGSYPFVPPVPGKDA 128
Query: 120 EGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLL 179
EG F ++++D+ I+ Y R AVV G GL+GLE A A LG+ +VE L+
Sbjct: 129 EGCFVYRTIEDLLAIEAYARTRATTGAVV-GGGLLGLEAAGALNGLGLTSHIVEFAPRLM 187
Query: 180 PTMLDKDMASIVQKNMEEHGVKFRFGVGVSEII---GNPVEAVKIGD-ETVEADLVLVAT 235
P +D+ + + + +EE G+ GVG EI V +K+ D + DLV+ +
Sbjct: 188 PVQVDEGGGAALLRTIEEMGLSVHTGVGTQEITTGEDGAVTGMKLSDGSELATDLVVFSA 247
Query: 236 GVRANVDLAKDAGLEVNR--GIVVNEYLQT-SDPDIYAIGDCAEVIDAVTGKRTLSQLGT 292
GVR LA+D GL V GI V+E +T +D ++AIG+CA D + L
Sbjct: 248 GVRPRDQLARDCGLAVGERGGISVDERCRTVTDERVFAIGECALAADG-----RVYGLVA 302
Query: 293 SAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRG 352
A+ AA IA ++ F + +L +++ +FG + +DVV R
Sbjct: 303 PGYEQAETAAATIAAQEASFTGADLSTKLKLLGVDVASFG-DAHGTTEDCLDVVYSDSRA 361
Query: 353 STKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYL 412
+ G +G L+G +VG +G TL A
Sbjct: 362 GLYKKLVVG------------RDGTLLGGILVGDAEAYG---TLRAF------------- 393
Query: 413 ETAYAPPISP 422
T PP+SP
Sbjct: 394 -TGSVPPVSP 402
>emb|CAB69078.1| (AJ233397) rubredoxin reductase [Pseudomonas putida]
Length = 385
Score = 160 bits (400), Expect = 3e-38
Identities = 103/313 (32%), Positives = 165/313 (51%), Gaps = 10/313 (3%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYS--PCALPHVISGTIEKPEDV 58
M +V++G+GTAG N A +LR+ K I ++ +E Y P + + S T E +
Sbjct: 1 MAIVIVGAGTAGVNAAFWLRQYGYKGGIRLLSRESVTPYQRPPLSKAFLTSETAESA--I 58
Query: 59 IVFPNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGE-VPYDKLVLATGSKAFIPPIKGV 117
+ P FY I + L + ID RKVV GE Y+KL+LATG+ A +G
Sbjct: 59 PLKPESFYTNNNISISLNTQIVSIDVGRKVVAAKDGEEYAYEKLILATGASARRLTCEGS 118
Query: 118 ENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEH 177
E GV L+S++D + ++ + + VV+G G+IGLE A A +G V V+E
Sbjct: 119 ELSGVCYLRSMEDAKNLRRKLVES--ASVVVLGGGVIGLEVASAAVGIGRRVTVIEAAPR 176
Query: 178 LLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIG---NPVEAVKIGDETVEADLVLVA 234
++ ++ A++V+ +E GV F+ ++ I G + + V E ++ADL++V
Sbjct: 177 VMARVVTPAAANLVRARLEAEGVGFKLNAKLTSIKGRNGHVNQCVLESGEKIQADLIIVG 236
Query: 235 TGVRANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSA 294
G ++LA +A LEV+ G+VV++ ++TSD IYAIGDCA + G + +A
Sbjct: 237 IGAIPELELATEAALEVSNGVVVDDQMRTSDTSIYAIGDCALARNLFFGTMVRLETIHNA 296
Query: 295 VRMAKVAAEHIAG 307
V A++ A I G
Sbjct: 297 VTQAQIVASSICG 309
>sp|P75389|NAOX_MYCPN PROBABLE NADH OXIDASE (NOXASE) >gi|2146473|pir||S73770 NADH oxidase
nox - Mycoplasma pneumoniae (strain ATCC 29342)
>gi|1674132|gb|AAB96092.1| (AE000044) NADH oxidase
[Mycoplasma pneumoniae]
Length = 479
Score = 159 bits (398), Expect = 6e-38
Identities = 131/470 (27%), Positives = 218/470 (45%), Gaps = 39/470 (8%)
Query: 2 RVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVF 61
+V+VIG AG++F L + ++ + + + C + +SG ++ ED+
Sbjct: 3 KVIVIGVNHAGTSFIRTLLSKSKDFQVNAYDRNTNISFLGCGIALAVSGVVKNTEDLFYS 62
Query: 62 PNEFYEKQKIKMMLGVEAKKIDRERKVVI-----TDKGEVP-YDKLVLATGSKAFIPPIK 115
E + + + + +D ++K VI T K V YD+LV+A+G+ P
Sbjct: 63 TPEELKAMGANVFMAHDVVGLDLDKKQVIVKDLATGKETVDHYDQLVVASGAW---PICM 119
Query: 116 GVENEGVFT-------------LKSLDDVRR-------IKEYIGKRNPKKAVVIGAGLIG 155
VENE T +K+L + I + ++ K ++G+G IG
Sbjct: 120 NVENEVTHTQLQFNHTDKYCGNIKNLISCKLYQHALTLIDSFRHDKSIKSVAIVGSGYIG 179
Query: 156 LEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEII--- 212
LE AEA + G +V V+++L+ D++ + ++K M++ G+ G V I
Sbjct: 180 LELAEAAWQCGKQVTVIDMLDKPAGNNFDEEFTNELEKAMKKAGINLMMGSAVKGFIVDA 239
Query: 213 -GNPVEAVKIGDETVEADLVLVATGVRANVDLA-KDAGLEVNRG--IVVNEYLQT-SDPD 267
N V+ V+ V+ADLV+ + G R N KD E NR I VNEYLQ + +
Sbjct: 240 DKNVVKGVETDKGRVDADLVIQSIGFRPNTQFVPKDRQFEFNRNGSIKVNEYLQALNHEN 299
Query: 268 IYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAG-KDVKFRPVFNTAITELFDL 326
+Y IG A + DA + + L T+AV+ VAA H+ G K VK + T +F L
Sbjct: 300 VYVIGGAAAIYDAASEQYENIDLATNAVKSGLVAAMHMIGSKAVKLESIVGTNALHVFGL 359
Query: 327 EIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGG 386
+ G+TE+RAK G DV V + +PE+ + KLI+ K+ RL+GAQ++
Sbjct: 360 NLAATGLTEKRAKMNGFDVGVSIVDDNDRPEFMGTFDKVRFKLIYDKKTLRLLGAQLLSW 419
Query: 387 ERVWGRIMTLSALA-QMGAKVEDIAYLETAYAPPISPTIDPITVAADMAL 435
I+ ALA Q + ++ ++ + P + + + A AL
Sbjct: 420 NTNHSEIIFYIALAVQKKMLISELGLVDVYFLPHYNKPFNFVLAAVLQAL 469
>emb|CAA86926.1| (Z46863) rubredoxin reductase [Acinetobacter sp. ADP1]
Length = 393
Score = 157 bits (392), Expect = 3e-37
Identities = 100/284 (35%), Positives = 152/284 (53%), Gaps = 10/284 (3%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFP 62
+V+IGSG AG A RKL+ + E+++I + + Y+ L + +SG + PE + +
Sbjct: 4 IVIIGSGMAGYTLAREFRKLNPEHELVMICADDAVNYAKPTLSNALSGN-KAPEQIPLGD 62
Query: 63 NEFYEKQ-KIKMMLGVEAKKIDRERKVVITDKGEV----PYDKLVLATGSKAFIPPIKGV 117
E Q K++++ K I+ E + +K PY KLVLA G+ I G
Sbjct: 63 AEKMSTQLKLQILSETWVKAINPETHELKLEKNGQETIQPYSKLVLAVGANPTRLAIAGD 122
Query: 118 ENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEH 177
++ + + SL D R +E + KR K+ V++GAGLIG E A G +V V++L
Sbjct: 123 GSDDIHVVNSLIDYRAFRENLAKRQDKRVVILGAGLIGCEFANDLQHTGHQVTVIDLSPR 182
Query: 178 LLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEII----GNPVEAVKIGDETVEADLVLV 233
L +L +A QKN+EE G+ F V ++ G +T+ AD+VL
Sbjct: 183 PLGRLLPAHIADAFQKNLEESGIHFVLSTTVEKVSKINDGQDYAVTLANGQTLVADIVLS 242
Query: 234 ATGVRANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEV 277
A G++ N+DLAK AG+ +RGI+ N L+T+ DIYAIGDCAEV
Sbjct: 243 AIGLQPNIDLAKHAGVHTSRGILTNSLLETNLEDIYAIGDCAEV 286
>sp|P43494|THCD_RHOER RHODOCOXIN REDUCTASE >gi|576673|gb|AAC45752.1| (U17130) ThcD
[Rhodococcus erythropolis]
Length = 427
Score = 156 bits (391), Expect = 4e-37
Identities = 106/321 (33%), Positives = 161/321 (50%), Gaps = 10/321 (3%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
M +V+IGSG AG A+ LR I ++G EP + Y L + E + +
Sbjct: 1 MSIVIIGSGQAGFEAAVSLRSHGFSGTITLVGDEPGVPYQRPPLSKAYLHSDPDRESLAL 60
Query: 61 FPNEFYEKQKIKMMLGVEAKKIDRE-RKVVITDKGEVPYDKLVLATGSKAFIPPIKGVEN 119
P ++++ +I + G +IDR+ ++V + D + YD L+LATG++ + P+ G
Sbjct: 61 RPAQYFDDHRITLTCGKPVVRIDRDAQRVELIDATAIEYDHLILATGARNRLLPVPGANL 120
Query: 120 EGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLL 179
GV L++ + + + + VVIGAG IGLE A A K G++V VVE ++ +
Sbjct: 121 PGVHYLRTAGEAESLTSSMASCS--SLVVIGAGFIGLEVAAAARKKGLDVTVVEAMDRPM 178
Query: 180 PTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKI---GDETVEADLVLVATG 236
L M+ EHGV R GV I A + + + AD V+V G
Sbjct: 179 ARALSSVMSGYFSTAHTEHGVHMRLSTGVKTINAADGRAAGVTTNSGDVIHADAVVVGIG 238
Query: 237 VRANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGT--SA 294
V N++LA GL V+ GIVV+EYL+T D +I AIGDCA + GK L +L + +A
Sbjct: 239 VVPNIELAALTGLPVDNGIVVDEYLRTPDENISAIGDCAAY--PIPGKAGLVRLESVQNA 296
Query: 295 VRMAKVAAEHIAGKDVKFRPV 315
V A+ A + G +R V
Sbjct: 297 VDQARCLAAQLTGTSTHYRSV 317
>pdb|1NHR| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant With Leu 40 Replaced
By Cys (L40c)
Length = 447
Score = 156 bits (390), Expect = 5e-37
Identities = 116/445 (26%), Positives = 204/445 (45%), Gaps = 8/445 (1%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
M+V+V+GS G L L AEI K + + C + + G ++ V
Sbjct: 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFCSCGMQLYLEGKVKDVNSVRY 60
Query: 61 FPNEFYEKQKIKMMLGVEAKKID-RERKVVITD--KGEVP---YDKLVLATGSKAFIPPI 114
E E + + + E I +E +V + D GE YDKL+++ G+ F I
Sbjct: 61 MTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDI 120
Query: 115 KGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVEL 174
G + + ++ ++ ++K+ VVIG+G IG+E AEAFAK G +V V+++
Sbjct: 121 PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
Query: 175 LEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGN-PVEAVKIGDETVEADLVLV 233
L+ L LDK+ ++ + ME + + G V G+ V+ V +ADLV+V
Sbjct: 181 LDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVV 240
Query: 234 ATGVRANVDLAKDA-GLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGT 292
A GVR N K L N I +EY++TS+PD++A+GD + L T
Sbjct: 241 AVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALAT 300
Query: 293 SAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRG 352
+A + + A +++ F V ++ +FD + + G+ E A++ G +
Sbjct: 301 NARKQGRFAVKNLEEPVKPFPGVQGSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVE 360
Query: 353 STKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYL 412
++ P + KL++ E +++GAQ++ + I +S Q +ED+AY
Sbjct: 361 DYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYA 420
Query: 413 ETAYAPPISPTIDPITVAADMALRK 437
+ + P + I AA A+++
Sbjct: 421 DFFFQPAFDKPWNIINTAALEAVKQ 445
>sp|P37062|NAPE_ENTFA NADH PEROXIDASE (NPXASE) >gi|97914|pir||S18332 NADH peroxidase (EC
1.11.1.1) [validated] - Enterococcus faecalis
>gi|494414|pdb|1NPX| Nadh Peroxidase (E.C.1.11.1.1)
Non-Active Form With Cys 42 Oxidized To A Sulfonic Acid
(Cys42-So3h) >gi|494823|pdb|2NPX| Nadh Peroxidase
(E.C.1.11.1.1) With Cys 42 Oxidized To A Sulfonic Acid
(Cys42-So3h) >gi|49023|emb|CAA44611.1| (X62755) NADH
peroxidase [Enterococcus faecalis]
Length = 447
Score = 155 bits (389), Expect = 7e-37
Identities = 116/445 (26%), Positives = 204/445 (45%), Gaps = 8/445 (1%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
M+V+V+GS G L L AEI K + + C + + G ++ V
Sbjct: 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSCGMQLYLEGKVKDVNSVRY 60
Query: 61 FPNEFYEKQKIKMMLGVEAKKID-RERKVVITD--KGEVP---YDKLVLATGSKAFIPPI 114
E E + + + E I +E +V + D GE YDKL+++ G+ F I
Sbjct: 61 MTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDI 120
Query: 115 KGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVEL 174
G + + ++ ++ ++K+ VVIG+G IG+E AEAFAK G +V V+++
Sbjct: 121 PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
Query: 175 LEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGN-PVEAVKIGDETVEADLVLV 233
L+ L LDK+ ++ + ME + + G V G+ V+ V +ADLV+V
Sbjct: 181 LDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVV 240
Query: 234 ATGVRANVDLAKDA-GLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGT 292
A GVR N K L N I +EY++TS+PD++A+GD + L T
Sbjct: 241 AVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALAT 300
Query: 293 SAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRG 352
+A + + A +++ F V ++ +FD + + G+ E A++ G +
Sbjct: 301 NARKQGRFAVKNLEEPVKPFPGVQGSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVE 360
Query: 353 STKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYL 412
++ P + KL++ E +++GAQ++ + I +S Q +ED+AY
Sbjct: 361 DYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYA 420
Query: 413 ETAYAPPISPTIDPITVAADMALRK 437
+ + P + I AA A+++
Sbjct: 421 DFFFQPAFDKPWNIINTAALEAVKQ 445
>sp|P17052|RURE_PSEOL RUBREDOXIN-NAD(+) REDUCTASE >gi|77723|pir||S09114
rubredoxin--NAD(P)+ reductase (EC 1.18.1.4) -
Pseudomonas oleovorans >gi|5824156|emb|CAB54063.1|
(AJ245436) rubredoxin reductase [Pseudomonas putida]
Length = 385
Score = 155 bits (389), Expect = 7e-37
Identities = 101/311 (32%), Positives = 160/311 (50%), Gaps = 6/311 (1%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
M +VV+G+GTAG N A +LR+ K EI + +E Y L + V +
Sbjct: 1 MAIVVVGAGTAGVNAAFWLRQYGYKGEIRIFSRESVAPYQRPPLSKAFLTSEIAESAVPL 60
Query: 61 FPNEFYEKQKIKMMLGVEAKKIDRERKVVITDKG-EVPYDKLVLATGSKAFIPPIKGVEN 119
P FY I + L ID RK+V + G E Y+KL+LAT + A +G E
Sbjct: 61 KPEGFYTNNNITISLNTPIVSIDVGRKIVSSKDGKEYAYEKLILATPASARRLTCEGSEL 120
Query: 120 EGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLL 179
GV L+S++D + ++ + + VV+G G+IGLE A A LG V V+E ++
Sbjct: 121 SGVCYLRSMEDAKNLRRKLVES--ASVVVLGGGVIGLEVASAAVGLGKRVTVIEATPRVM 178
Query: 180 PTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIG---NPVEAVKIGDETVEADLVLVATG 236
++ A++V+ +E G++F+ ++ I G + + V E ++ADL++V G
Sbjct: 179 ARVVTPAAANLVRARLEAEGIEFKLNAKLTSIKGRNGHVEQCVLESGEEIQADLIVVGIG 238
Query: 237 VRANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVR 296
++LA +A LEV+ G+VV++ + TSD IYAIGDCA + G + +AV
Sbjct: 239 AIPELELATEAALEVSNGVVVDDQMCTSDTSIYAIGDCAMARNPFWGTMVRLETIHNAVT 298
Query: 297 MAKVAAEHIAG 307
A++ A I G
Sbjct: 299 HAQIVASSICG 309
>pdb|1NHS| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant With Ser 41 Replaced
By Cys (S41c)
Length = 447
Score = 155 bits (387), Expect = 1e-36
Identities = 116/445 (26%), Positives = 204/445 (45%), Gaps = 8/445 (1%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
M+V+V+GS G L L AEI K + + C + + G ++ V
Sbjct: 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLCCGMQLYLEGKVKDVNSVRY 60
Query: 61 FPNEFYEKQKIKMMLGVEAKKID-RERKVVITD--KGEVP---YDKLVLATGSKAFIPPI 114
E E + + + E I +E +V + D GE YDKL+++ G+ F I
Sbjct: 61 MTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDI 120
Query: 115 KGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVEL 174
G + + ++ ++ ++K+ VVIG+G IG+E AEAFAK G +V V+++
Sbjct: 121 PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
Query: 175 LEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGN-PVEAVKIGDETVEADLVLV 233
L+ L LDK+ ++ + ME + + G V G+ V+ V +ADLV+V
Sbjct: 181 LDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVV 240
Query: 234 ATGVRANVDLAKDA-GLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGT 292
A GVR N K L N I +EY++TS+PD++A+GD + L T
Sbjct: 241 AVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALAT 300
Query: 293 SAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRG 352
+A + + A +++ F V ++ +FD + + G+ E A++ G +
Sbjct: 301 NARKQGRFAVKNLEEPVKPFPGVQGSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVE 360
Query: 353 STKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYL 412
++ P + KL++ E +++GAQ++ + I +S Q +ED+AY
Sbjct: 361 DYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYA 420
Query: 413 ETAYAPPISPTIDPITVAADMALRK 437
+ + P + I AA A+++
Sbjct: 421 DFFFQPAFDKPWNIINTAALEAVKQ 445
>emb|CAC04223.1| (AL391515) putative ferredoxin reductase [Streptomyces coelicolor
A3(2)]
Length = 420
Score = 155 bits (387), Expect = 1e-36
Identities = 135/437 (30%), Positives = 202/437 (45%), Gaps = 41/437 (9%)
Query: 4 VVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTI---EKPEDVIV 60
V++G G A A LR+ ++VIG E + P P + G + E E + V
Sbjct: 8 VIVGGGLAAGKAAEELREHGHDGPLLVIGDE---RERPYIRPPLSKGYLLGKEDRESIHV 64
Query: 61 FPNEFYEKQKIKMMLGVEAKKID-RERKVVITDKGEVPYDKLVLATGSKAFIPPIKGVEN 119
P +Y + + ++LG +D R R V + D VPY L+LATGS + G +
Sbjct: 65 HPESWYREHDVDLLLGTSVTSVDARGRAVTLDDGRRVPYAGLLLATGSSPRRLSVPGADL 124
Query: 120 EGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLL 179
EGV L+ + D R+KE + + VV+G G IGLE A A G EV V+E E L
Sbjct: 125 EGVLYLRRVGDSERLKEAFTEG--ARIVVVGGGWIGLETAAAARAAGAEVTVLERGELPL 182
Query: 180 PTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP--VEAVKIGDET-VEADLVLVATG 236
+L ++ A + +HGV R + + G V+ V++ D T + AD V+V G
Sbjct: 183 LKVLGREAAEVFAGLHRDHGVDLRPHARIEAVTGTGGRVDGVRLADGTHLPADAVVVGVG 242
Query: 237 VRANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVR 296
+ NV LA++AGL+V GIV + L+TS ++A GD A G+ + +A+
Sbjct: 243 ITPNVRLAEEAGLDVRNGIVTDARLRTSAAGVHAAGDVANAYHPRLGRHLRVEHWANALH 302
Query: 297 MAKVAAEHIAGKDVKF--RPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGST 354
+ AA + G+D + P F T+ +DL + G E G D VV FRGS
Sbjct: 303 QPRTAALSMLGQDAVYDRLPYF---YTDQYDLGMEYTGYAEP----GGYDRVV--FRGSR 353
Query: 355 KPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAY--- 411
+ + L F R++ V +W I T+ AL + GA+ +D A
Sbjct: 354 EERRF---------LAFWMSGDRVLAGMSV---NLWDVIGTIRALIESGAETDDAALADP 401
Query: 412 ---LETAYAPPISPTID 425
LE+ P PT D
Sbjct: 402 SVPLESLLPPHARPTGD 418
>pdb|1NHP| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant With Cys 42 Replaced
By Ala (C42a)
Length = 447
Score = 152 bits (380), Expect = 8e-36
Identities = 115/445 (25%), Positives = 203/445 (44%), Gaps = 8/445 (1%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
M+V+V+GS G L L AEI K + + + + G ++ V
Sbjct: 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRY 60
Query: 61 FPNEFYEKQKIKMMLGVEAKKID-RERKVVITD--KGEVP---YDKLVLATGSKAFIPPI 114
E E + + + E I +E +V + D GE YDKL+++ G+ F I
Sbjct: 61 MTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDI 120
Query: 115 KGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVEL 174
G + + ++ ++ ++K+ VVIG+G IG+E AEAFAK G +V V+++
Sbjct: 121 PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
Query: 175 LEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGN-PVEAVKIGDETVEADLVLV 233
L+ L LDK+ ++ + ME + + G V G+ V+ V +ADLV+V
Sbjct: 181 LDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVV 240
Query: 234 ATGVRANVDLAKDA-GLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGT 292
A GVR N K L N I +EY++TS+PD++A+GD + L T
Sbjct: 241 AVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALAT 300
Query: 293 SAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRG 352
+A + + A +++ F V ++ +FD + + G+ E A++ G +
Sbjct: 301 NARKQGRFAVKNLEEPVKPFPGVQGSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVE 360
Query: 353 STKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYL 412
++ P + KL++ E +++GAQ++ + I +S Q +ED+AY
Sbjct: 361 DYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYA 420
Query: 413 ETAYAPPISPTIDPITVAADMALRK 437
+ + P + I AA A+++
Sbjct: 421 DFFFQPAFDKPWNIINTAALEAVKQ 445
>pdb|1NHQ| Nadh Peroxidase (Npx) (E.C.1.11.1.1) Mutant With Cys 42 Replaced
By Ser (C42s)
Length = 447
Score = 152 bits (379), Expect = 1e-35
Identities = 115/445 (25%), Positives = 203/445 (44%), Gaps = 8/445 (1%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
M+V+V+GS G L L AEI K + + + + G ++ V
Sbjct: 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSSGMQLYLEGKVKDVNSVRY 60
Query: 61 FPNEFYEKQKIKMMLGVEAKKID-RERKVVITD--KGEVP---YDKLVLATGSKAFIPPI 114
E E + + + E I +E +V + D GE YDKL+++ G+ F I
Sbjct: 61 MTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDI 120
Query: 115 KGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVEL 174
G + + ++ ++ ++K+ VVIG+G IG+E AEAFAK G +V V+++
Sbjct: 121 PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
Query: 175 LEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGN-PVEAVKIGDETVEADLVLV 233
L+ L LDK+ ++ + ME + + G V G+ V+ V +ADLV+V
Sbjct: 181 LDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVV 240
Query: 234 ATGVRANVDLAKDA-GLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGT 292
A GVR N K L N I +EY++TS+PD++A+GD + L T
Sbjct: 241 AVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALAT 300
Query: 293 SAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRG 352
+A + + A +++ F V ++ +FD + + G+ E A++ G +
Sbjct: 301 NARKQGRFAVKNLEEPVKPFPGVQGSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVE 360
Query: 353 STKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYL 412
++ P + KL++ E +++GAQ++ + I +S Q +ED+AY
Sbjct: 361 DYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYA 420
Query: 413 ETAYAPPISPTIDPITVAADMALRK 437
+ + P + I AA A+++
Sbjct: 421 DFFFQPAFDKPWNIINTAALEAVKQ 445
>pir||C65051 rubredoxin--NAD+ reductase (EC 1.18.1.1) - Escherichia coli
(strain K-12) >gi|882604|gb|AAA69221.1| (U29579)
ORF_o377 [Escherichia coli] >gi|1789065|gb|AAC75753.1|
(AE000355) putative oxidoreductase [Escherichia coli
K12]
Length = 377
Score = 151 bits (378), Expect = 1e-35
Identities = 92/277 (33%), Positives = 147/277 (52%), Gaps = 6/277 (2%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFP 62
+V+IGSG A +RK D + +I + +Y+ L HVIS +
Sbjct: 5 IVIIGSGFAARQLVKNIRKQDATIPLTLIAADSMDEYNKPDLSHVISQGQRADDLTRQTA 64
Query: 63 NEFYEKQKIKMMLGVEAKKIDRERKVVITDKGEVPYDKLVLATGSKAFIPPIKGVENEGV 122
EF E+ + + ID E +VV + + YDKLVLATG+ AF+PP+ G E +
Sbjct: 65 GEFAEQFNLHLFPQTWVTDIDAEARVVKSQNNQWQYDKLVLATGASAFVPPVPG--RELM 122
Query: 123 FTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTM 182
TL S + R + + R+ ++ +++G GLIG E A F + G V +++ +L ++
Sbjct: 123 LTLNSQQEYRACETQL--RDARRVLIVGGGLIGSELAMDFCRAGKAVTLIDNAASILASL 180
Query: 183 LDKDMASIVQKNMEEHGVKFRFGVGVS--EIIGNPVEAVKIGDETVEADLVLVATGVRAN 240
+ +++S +Q + E GV + E + ++A +E D V+ ATG+R
Sbjct: 181 MPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIQATLDRQRNIEVDAVIAATGLRPE 240
Query: 241 VDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEV 277
LA+ AGL +NRG+ V+ YLQTS+ DIYA+GDCAE+
Sbjct: 241 TALARRAGLTINRGVCVDSYLQTSNTDIYALGDCAEI 277
>pdb|1JOA| Nadh Peroxidase With Cysteine-Sulfenic Acid
Length = 447
Score = 151 bits (378), Expect = 1e-35
Identities = 115/445 (25%), Positives = 203/445 (44%), Gaps = 8/445 (1%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
M+V+V+GS G L L AEI K + + + + G ++ V
Sbjct: 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSXGMQLYLEGKVKDVNSVRY 60
Query: 61 FPNEFYEKQKIKMMLGVEAKKID-RERKVVITD--KGEVP---YDKLVLATGSKAFIPPI 114
E E + + + E I +E +V + D GE YDKL+++ G+ F I
Sbjct: 61 MTGEKMESRGVNVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDI 120
Query: 115 KGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVEL 174
G + + ++ ++ ++K+ VVIG+G IG+E AEAFAK G +V V+++
Sbjct: 121 PGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDI 180
Query: 175 LEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGN-PVEAVKIGDETVEADLVLV 233
L+ L LDK+ ++ + ME + + G V G+ V+ V +ADLV+V
Sbjct: 181 LDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGRVQKVVTDKNAYDADLVVV 240
Query: 234 ATGVRANVDLAKDA-GLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGT 292
A GVR N K L N I +EY++TS+PD++A+GD + L T
Sbjct: 241 AVGVRPNTAWLKGTLELHPNGLIKTDEYMRTSEPDVFAVGDATLIKYNPADTEVNIALAT 300
Query: 293 SAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRG 352
+A + + A +++ F V ++ +FD + + G+ E A++ G +
Sbjct: 301 NARKQGRFAVKNLEEPVKPFPGVQGSSGLAVFDYKFASTGINEVMAQKLGKETKAVTVVE 360
Query: 353 STKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYL 412
++ P + KL++ E +++GAQ++ + I +S Q +ED+AY
Sbjct: 361 DYLMDFNPDKQKAWFKLVYDPETTQILGAQLMSKADLTANINAISLAIQAKMTIEDLAYA 420
Query: 413 ETAYAPPISPTIDPITVAADMALRK 437
+ + P + I AA A+++
Sbjct: 421 DFFFQPAFDKPWNIINTAALEAVKQ 445
>pir||A49847 nitrite reductase (NADH) (EC 1.6.6.4) nasB - Klebsiella pneumoniae
Length = 957
Score = 150 bits (375), Expect = 3e-35
Identities = 111/391 (28%), Positives = 189/391 (47%), Gaps = 31/391 (7%)
Query: 3 VVVIGSGTAGSNFA--LFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
+V++G G G +F R L ++ I+V +E Y L +G E + +
Sbjct: 6 LVLVGHGMVGHHFLEQCVSRDLHQQYRIVVFCEERYAAYDRVELTEYFAG--RSAESLSL 63
Query: 61 FPNEFYEKQKIKMMLGVEAKKIDRERKVVITDKG-EVPYDKLVLATGSKAFIPPIKGVEN 119
+F+ + I++ L IDRE +VV G E +DKLVLATGS F+PP+ G
Sbjct: 64 VEGDFFTQHGIELRLSESVASIDREARVVRDAFGHETHWDKLVLATGSYPFVPPVPGHNL 123
Query: 120 EGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLL 179
EG F ++LDD+ +I ++ VVIG GL+GLE A A +LG+E VVE +L+
Sbjct: 124 EGCFVYRTLDDLDQIAARAA--TARRGVVIGGGLLGLEAANALKQLGLETHVVEFAPNLM 181
Query: 180 PTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKIG---DETVEADLVLVATG 236
LD A+++++ + E GV +EI+ N + +++ ++ D+++ + G
Sbjct: 182 AVQLDNGGAAMLREKISELGVGVHTSKATTEIVRNE-QGLQLNFRDGSSLATDMLVFSAG 240
Query: 237 VRANVDLAKDAGLEVNR--GIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSA 294
+R LA+ GL V GI ++ +TSDPD+ AIG+CA + + G L
Sbjct: 241 IRPQDALARSGGLSVGERGGICIDNQCRTSDPDVLAIGECALWENKIYG------LVAPG 294
Query: 295 VRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGST 354
+MA A +AG+ F + +L +++ +FG + G+ G
Sbjct: 295 YQMAARRAATLAGEAGSFSGADMSTKLKLLGVDVASFGDAQ------------GRTPGCQ 342
Query: 355 KPEYYPGGKPITVKLIFRKEEGRLIGAQIVG 385
++ G + + K++ + L+G +VG
Sbjct: 343 SYQWTHGPQQVYKKIVVSADGKNLLGGVLVG 373
>sp|P37596|YGBD_ECOLI HYPOTHETICAL 41.4 KD PROTEIN IN SRLQ-HYPF INTERGENIC REGION (ORF4)
(ORF2) >gi|688408|dbj|BAA05934.1| (D28595) unknown
[Escherichia coli]
Length = 377
Score = 150 bits (375), Expect = 3e-35
Identities = 91/277 (32%), Positives = 147/277 (52%), Gaps = 6/277 (2%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFP 62
+V+IGSG A +RK D + +I + +Y+ L HVIS +
Sbjct: 5 IVIIGSGFAARQLVKNIRKQDATIPLTLIAADSMDEYNKPDLSHVISQGQRADDLTRQTA 64
Query: 63 NEFYEKQKIKMMLGVEAKKIDRERKVVITDKGEVPYDKLVLATGSKAFIPPIKGVENEGV 122
EF E+ + + ID E +VV + + YDKLVLATG+ AF+PP+ G E +
Sbjct: 65 GEFAEQFNLHLFPQTWVTDIDAEARVVKSQNNQWQYDKLVLATGASAFVPPVPG--RELM 122
Query: 123 FTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTM 182
TL S + R + + R+ ++ +++G GLIG E A F + G V +++ +L ++
Sbjct: 123 LTLNSQQEYRACETQL--RDARRVLIVGGGLIGSELAMDFCRAGKAVTLIDNAASILASL 180
Query: 183 LDKDMASIVQKNMEEHGVKFRFGVGVS--EIIGNPVEAVKIGDETVEADLVLVATGVRAN 240
+ +++S +Q + E GV + E + ++A +E D V+ ATG+R
Sbjct: 181 MPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSGIQATLDRQRNIEVDAVIAATGLRPE 240
Query: 241 VDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEV 277
LA+ AGL +NRG+ V+ YLQT++ DIYA+GDCAE+
Sbjct: 241 TALARRAGLTINRGVCVDSYLQTNNTDIYALGDCAEI 277
>sp|Q06458|NIRB_KLEPN NITRITE REDUCTASE [NAD(P)H] LARGE SUBUNIT >gi|293006|gb|AAA25099.1|
(L06800) nitrite reductase [Klebsiella oxytoca]
Length = 957
Score = 150 bits (374), Expect = 4e-35
Identities = 111/391 (28%), Positives = 189/391 (47%), Gaps = 31/391 (7%)
Query: 3 VVVIGSGTAGSNFA--LFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
+V++G G G +F R L ++ I+V +E Y L +G E + +
Sbjct: 6 LVLVGHGMVGHHFLEQCVSRDLHQQYRIVVFCEERYAAYDRVHLTEYFAG--RSAESLSL 63
Query: 61 FPNEFYEKQKIKMMLGVEAKKIDRERKVVITDKG-EVPYDKLVLATGSKAFIPPIKGVEN 119
+F+ + I++ L IDRE +VV G E +DKLVLATGS F+PP+ G
Sbjct: 64 VEGDFFTQHGIELRLSESVASIDREARVVRDAFGHETHWDKLVLATGSYPFVPPVPGHNL 123
Query: 120 EGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLL 179
EG F ++LDD+ +I ++ VVIG GL+GLE A A +LG+E VVE +L+
Sbjct: 124 EGCFVYRTLDDLDQIAARAA--TARRGVVIGGGLLGLEAANALKQLGLETHVVEFAPNLM 181
Query: 180 PTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKIG---DETVEADLVLVATG 236
LD A+++++ + E GV +EI+ N + +++ ++ D+++ + G
Sbjct: 182 AVQLDNGGAAMLREKISELGVGVHTSKATTEIVRNE-QGLQLNFRDGSSLATDMLVFSAG 240
Query: 237 VRANVDLAKDAGLEVNR--GIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSA 294
+R LA+ GL V GI ++ +TSDPD+ AIG+CA + + G L
Sbjct: 241 IRPQDALARSGGLSVGERGGICIDNQCRTSDPDVLAIGECALWENKIYG------LVAPG 294
Query: 295 VRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGST 354
+MA A +AG+ F + +L +++ +FG + G+ G
Sbjct: 295 YQMAARRAATLAGEAGSFSGADMSTKLKLLGVDVASFGDAQ------------GRTPGCQ 342
Query: 355 KPEYYPGGKPITVKLIFRKEEGRLIGAQIVG 385
++ G + + K++ + L+G +VG
Sbjct: 343 SYQWTHGPQQVYKKIVVSADGKNLLGGVLVG 373
>pir||E70667 hypothetical protein Rv1869c - Mycobacterium tuberculosis (strain
H37RV) >gi|1781178|emb|CAB06118.1| (Z83859) hypothetical
protein Rv1869c [Mycobacterium tuberculosis]
Length = 411
Score = 146 bits (366), Expect = 3e-34
Identities = 103/310 (33%), Positives = 156/310 (50%), Gaps = 7/310 (2%)
Query: 4 VVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFPN 63
V++G G AG+ LR+ D II+ G E + Y L + D + +
Sbjct: 8 VIVGGGLAGAKAVEALRRSDFGGRIILFGDEEHLPYDRPPLSKEFLAGKKSLSDFTIQTS 67
Query: 64 EFYEKQKIKMMLGVEAKKIDRERKVV-ITDKGEVPYDKLVLATGSKAFIPPIKGVENEGV 122
++Y + + LGV +DR V + D V YDKL+LATGS PPI G + GV
Sbjct: 68 DWYRDHDVDVRLGVRVSSLDRSAHTVELPDGAAVRYDKLLLATGSAPRRPPIPGSDAAGV 127
Query: 123 FTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTM 182
L+S +D + + + + V+GAG IGLE A + + G++V VVE L
Sbjct: 128 HYLRSYNDAVALNSVLVQGS--SLAVVGAGWIGLEVAASARQRGVDVTVVETAIQPLLAA 185
Query: 183 LDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEA--VKIGD-ETVEADLVLVATGVRA 239
L + + + + GV R + EI +A +K+ D TV AD VLVA G +
Sbjct: 186 LGEAVGKVFADLHRDQGVDLRLQTQLEEITAADGKATGLKMRDGSTVAADAVLVAVGAKP 245
Query: 240 NVDLAKDAGLEVNRG-IVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMA 298
NV+LA+ AGL + G ++V+ L+TSDPDIYA+GD A + G R ++ +A++
Sbjct: 246 NVELAQQAGLAMGEGGVLVDASLRTSDPDIYAVGDIAAAEHPLLGTRVRTEHWANALKQP 305
Query: 299 KVAAEHIAGK 308
VAA + G+
Sbjct: 306 AVAAAGMLGR 315
>sp|Q49408|NAOX_MYCGE PROBABLE NADH OXIDASE (NOXASE) >gi|1361730|pir||D64230 NADH oxidase
(nox) homolog - Mycoplasma genitalium
>gi|3844868|gb|AAC71497.1| (U39707) NADH oxidase (nox)
[Mycoplasma genitalium]
Length = 478
Score = 145 bits (361), Expect = 1e-33
Identities = 118/434 (27%), Positives = 199/434 (45%), Gaps = 38/434 (8%)
Query: 2 RVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVF 61
+V+VIG AG++F L + ++ + + + C + +SG ++ +D+
Sbjct: 3 KVIVIGINHAGTSFIRTLLSKSKDFKVNAYDRNTNISFLGCGIALAVSGVVKNTDDLFYS 62
Query: 62 PNEFYEKQKIKMMLGVEAKKIDRERKVV----ITDKGEVP--YDKLVLATGSKAFIPPIK 115
E ++ + + + ID +K V +T E +D+LV+A+G+ P
Sbjct: 63 NPEELKQMGANIFMSHDVTNIDLIKKQVTVRDLTSNKEFTDQFDQLVIASGAW---PICM 119
Query: 116 GVEN-------EGVFTLKSLDDVRR-------------IKEYIGKRNPKKAVVIGAGLIG 155
VEN E +T K +V+ I + + K ++G+G IG
Sbjct: 120 NVENKVTHKPLEFNYTDKYCGNVKNLISCKLYQHALTLIDSFRKDKTIKSVAIVGSGYIG 179
Query: 156 LEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEII--- 212
LE AEA +V V++LL+ D + ++K M++ G+K G V +
Sbjct: 180 LELAEAAWLCKKQVTVIDLLDKPAGNNFDHEFTDELEKVMQKDGLKLMMGCSVKGFVVDS 239
Query: 213 -GNPVEAVKIGDETVEADLVLVATGVRANVDLA-KDAGLEV--NRGIVVNEYLQT-SDPD 267
N V+ V+ V ADLV + G R + KD E N I VNE+LQ + D
Sbjct: 240 TNNVVKGVETDKGIVNADLVNQSIGFRPSTKFVPKDQNFEFIHNGSIKVNEFLQALNHKD 299
Query: 268 IYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKD-VKFRPVFNTAITELFDL 326
+Y IG CA + +A + + L T+AV+ VAA HI G + VK + + T +F L
Sbjct: 300 VYVIGGCAAIYNAASEQYENIDLATNAVKSGLVAAMHIIGSNQVKLQSIVGTNALHIFGL 359
Query: 327 EIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGG 386
+ G+TE+RAK+ G DV + + +PE+ + KL++ K+ R++GAQ++
Sbjct: 360 NLAACGLTEQRAKKLGFDVGISVVDDNDRPEFMGSYDKVRFKLVYDKKTLRILGAQLLSW 419
Query: 387 ERVWGRIMTLSALA 400
I+ ALA
Sbjct: 420 NTNHSEIIFYIALA 433
>dbj|BAA06871.1| (D32142) biphenyl dioxygenase [Rhodococcus sp.]
Length = 413
Score = 142 bits (354), Expect = 9e-33
Identities = 122/409 (29%), Positives = 194/409 (46%), Gaps = 32/409 (7%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPH-VISGTIEKPEDVIVF 61
+VVIG G AG A LR +++IGKE + Y AL V++G + P ++F
Sbjct: 5 IVVIGGGVAGVTAAQSLRSEGYDGRLVLIGKERELPYDRTALSKAVLAGDLADPP--LLF 62
Query: 62 PNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGE-VPYDKLVLATGSKAFIPPIKGVENE 120
P ++Y++ +I+ +L ++D R+ V+ D G + D++ LATG+ A +P G +
Sbjct: 63 PADWYDEWQIETVLDRTVLQVDVTRREVLLDGGPWLKVDRVHLATGASARVPSFSGSDLP 122
Query: 121 GVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLP 180
GV TL++ DDV R++ ++ VV+G GLIG E A KLG+EV ++E + LL
Sbjct: 123 GVATLRTADDVHRMRR--DWEPGQRLVVVGGGLIGCEVATTARKLGLEVSILEASDELLQ 180
Query: 181 TMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKIGDE--TVEADLVLVATGVR 238
+L + + + + E G+ GV+E G IG + + AD +V G
Sbjct: 181 RVLGRRIGGWCRARLMELGISVVLNTGVAEFKGVDRITTVIGTDGRSFVADRAIVCVGAE 240
Query: 239 ANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMA 298
+A+ +GL NRGI+VN+ T+ ++A GD A +TG R + ++ R A
Sbjct: 241 PETAIAEQSGLACNRGILVNDSGGTAAEGVFAAGDVAS-WPLLTGGRRSLETYINSQREA 299
Query: 299 KVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEY 358
A + GK V P + TE+ I ++G GS EY
Sbjct: 300 TAVASAMLGKAV-HGPQLPLSWTEMAGHRI----------------QMIGDIEGS--GEY 340
Query: 359 YPGGKPIT-VKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKV 406
G P L+FR +GR+ A V R + + L + GA+V
Sbjct: 341 VMRGDPDDGPALLFRLSDGRVTAAVSVDAPRDFA---MATRLVERGAQV 386
>sp|P42454|RURE_ACICA RUBREDOXIN-NAD(+) REDUCTASE >gi|2120863|pir||I39521
rubredoxin--NAD+ reductase (EC 1.18.1.1) - Acinetobacter
calcoaceticus
Length = 392
Score = 142 bits (354), Expect = 9e-33
Identities = 100/283 (35%), Positives = 151/283 (53%), Gaps = 9/283 (3%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFP 62
+V+IGSG AG A RKL+ + E+++I + + Y+ L + +SG + PE + +
Sbjct: 4 IVIIGSGMAGYTLAREFRKLNPEHELVMICADDAVNYAKPTLSNALSGN-KAPEQIPLGD 62
Query: 63 NEFYEKQ-KIKMMLGVEAKKIDRERKVVITDKGEV----PYDKLVLATGSKAFIPPIKGV 117
E Q K+++ K I+ E + +K PY KLVLA G+ I G
Sbjct: 63 AEKMSTQLKLQISSDTWVKAINPETHELKLEKNGQETIQPYSKLVLAVGANPTRLAIAGD 122
Query: 118 ENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEH 177
++ + + SL D R +E + KR K+ V++GAGLIG E A G +V V++L
Sbjct: 123 GSDDIHVVNSLIDYRAFRENLAKRQDKRVVILGAGLIGCEFANDLQHTGHQVTVIDLSPR 182
Query: 178 LLPTMLDKDMASIVQKNMEE--HGVKFRFGVGVSEIIGNPVEAVKIGD-ETVEADLVLVA 234
L +L +A QK + H V VS+I AV + + +T+ AD+VL A
Sbjct: 183 PLGRLLPAHIADAFQKIWRKRIHFVLSTTVEKVSKINDGQDYAVTLANGQTLVADIVLSA 242
Query: 235 TGVRANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEV 277
G++ N+DLAK AG+ +RGI+ N L+T+ DIYAIGDCAEV
Sbjct: 243 IGLQPNIDLAKHAGVHTSRGILTNSLLETNLEDIYAIGDCAEV 285
>gb|AAB08028.1| (U24277) isopropylbenzene 2,3-dioxygenase [Rhodococcus
erythropolis]
Length = 412
Score = 140 bits (350), Expect = 3e-32
Identities = 118/409 (28%), Positives = 194/409 (46%), Gaps = 32/409 (7%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPH-VISGTIEKPEDVIVF 61
+VVIG G AG + LR + +IGKE + Y +L V++G + P +
Sbjct: 5 IVVIGGGVAGVSAVQSLRSEGYDGRLFLIGKERELPYDRTSLSKAVLAGDLADPPPLA-- 62
Query: 62 PNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGE-VPYDKLVLATGSKAFIPPIKGVENE 120
P ++Y++ +++ +L ++D RK V+ D G + D+++LATG+ A +P G +
Sbjct: 63 PADWYDELQVETVLDRTVLQVDVTRKEVLLDGGRSLEVDRVLLATGASARVPSFSGADLP 122
Query: 121 GVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLP 180
GV TL+++DD +R+++ ++ VV+G GLIG E A KLG+EV ++E + LL
Sbjct: 123 GVTTLRTVDDAQRLRQ--DWEPGQRLVVVGGGLIGCEVATTARKLGLEVSILEASDELLQ 180
Query: 181 TMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKIGDE--TVEADLVLVATGVR 238
+L + + + +EE G+ GV+E G IG + AD +V G
Sbjct: 181 RVLGRRIGGWCRARLEELGISVMVNTGVAEFDGVDRITAVIGTDGRRFPADSAIVCVGAE 240
Query: 239 ANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMA 298
+A+ AGL +RGI+VN+ T+ ++A GD A G+R+L + ++ + A
Sbjct: 241 PETAIAEQAGLACSRGIIVNDSGGTALEGVFAAGDAASWPLRTGGRRSL-ETYINSQKEA 299
Query: 299 KVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEY 358
A + GK V P + TE+ I ++G GS EY
Sbjct: 300 TAVASAMLGKAV-HAPQLPLSWTEIAGHRI----------------QMIGDIEGS--GEY 340
Query: 359 YPGGKPIT-VKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKV 406
G P L+FR +G+L A V R + L + GA+V
Sbjct: 341 VMRGAPDDGPALLFRLTDGKLTAALSVDAPR---EFAMATRLVESGAQV 386
>pir||G82976 probable rubredoxin reductase PA5349 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9951669|gb|AAG08734.1|AE004947_4 (AE004947) probable
rubredoxin reductase [Pseudomonas aeruginosa]
Length = 384
Score = 139 bits (346), Expect = 7e-32
Identities = 112/386 (29%), Positives = 178/386 (46%), Gaps = 29/386 (7%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFP 62
+V+IG+G AG N A RKLD + +++I + YS L S + + P
Sbjct: 7 LVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGLAMAEP 66
Query: 63 NEFYEKQKIKMMLGVEAKKIDRERKVVITDKGEVPYDKLVLATGSKAFIPPIKGVENEGV 122
E+ +++ ID + + + EV Y LVLA G++ P++G + +
Sbjct: 67 GAMAEQLNARILTHTRVTGIDPGHQRIWIGEEEVRYRDLVLAWGAEPIRVPVEGDAQDAL 126
Query: 123 FTLKSLDDVRRIKEYI-GKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPT 181
+ + L+D R ++ GKR + +++GAGLIG E A + G ++ VV E ++P
Sbjct: 127 YPINDLEDYARFRQAAAGKR---RVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPG 183
Query: 182 MLDKDMASIVQKNMEEHGVKFRFGVGVSEI--IGNPVEAVKIGDETVEADLVLVATGVRA 239
+L A VQ +E GV+F G ++ + G +EA E + DLV+ A G+R
Sbjct: 184 LLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRP 243
Query: 240 NVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAK 299
+LA AGL VNRGIVV+ L+TS +IYA+GDCAE V G L + A A+
Sbjct: 244 RTELAFAAGLAVNRGIVVDRSLRTSHANIYALGDCAE----VDGLNLLYVMPLMA--CAR 297
Query: 300 VAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYY 359
A+ +AG + +G K +VV ++
Sbjct: 298 ALAQTLAGNPSQV-----------------AYGPMPVTVKTPACPLVVSPPPRGMDGQWL 340
Query: 360 PGGKPITVKLIFRKEEGRLIGAQIVG 385
G +K++ R GR+IG + G
Sbjct: 341 VEGSGTDLKVLCRDTAGRVIGYALTG 366
>emb|CAA05635.1| (AJ002606) redA2 [Sphingomonas sp.]
Length = 409
Score = 138 bits (345), Expect = 1e-31
Identities = 100/336 (29%), Positives = 165/336 (48%), Gaps = 6/336 (1%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFP 62
VV++G+G AG+ A+ LR+ + I ++G+E + Y L + E + + P
Sbjct: 6 VVIVGAGHAGAQCAIALRQAGYEGSIALVGRENEVPYERPPLSKEYFSREKSFERLYIRP 65
Query: 63 NEFYEKQKIKMMLGVEAKKIDRERKVV-ITDKGEVPYDKLVLATGSKAFIPPIKGVENEG 121
EF+ ++ I + LG+E +D KV+ ++D Y +LV ATG G E G
Sbjct: 66 PEFWREKDIHLTLGIEVSAVDPGSKVLTLSDGSAFAYGQLVWATGGDPRKLACPGAELSG 125
Query: 122 VFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPT 181
V +++ D R+ I R + VV+G G IGLE A KL V ++E + +L
Sbjct: 126 VHAIRTRADCDRLMAEID-RGLTQVVVVGGGYIGLEAAAVLTKLNCHVTLLEAMPRVLAR 184
Query: 182 MLDKDMASIVQKNMEEHGVKFRFGVGVSEIIG-NPVEAVKIGDETV-EADLVLVATGVRA 239
+ ++++ + HGV R G+ V+ + G V V++GD +V A V+V G+
Sbjct: 185 VAGTELSTFYENEHRGHGVDLRTGITVAALEGQESVTGVRLGDGSVLPAQAVIVGIGIVP 244
Query: 240 NVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLS-QLGTSAVRMA 298
V +AG + G+ V+EY +TS PD++AIGDCA + R L + +A A
Sbjct: 245 AVAPLIEAGAAGDGGVTVDEYCRTSLPDVFAIGDCASFSCSFADGRVLRVESVQNANDQA 304
Query: 299 KVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMT 334
A+ I G +R F + +DL + T G++
Sbjct: 305 SCVAKTICGDPQPYR-AFPWFWSNQYDLRLQTAGLS 339
>gb|AAD53005.1|AF076471_3 (AF076471) MocF [Sinorhizobium meliloti]
Length = 408
Score = 138 bits (343), Expect = 2e-31
Identities = 98/310 (31%), Positives = 154/310 (49%), Gaps = 8/310 (2%)
Query: 2 RVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVF 61
R+V++G+G G+ A LR+ I +IG EP + Y L P+ +
Sbjct: 3 RIVIVGAGECGARAAFALREKGFDGGITLIGAEPDLPYERPPLSKEGLAAAAPPKYLADA 62
Query: 62 PNEFYEKQKIKMMLGVEAKKIDRERKVV-ITDKGEVPYDKLVLATGSKAFIPPIKGVENE 120
Y++ +I ++ +IDR+ K V + D V YD+L+LATG+ + P +E
Sbjct: 63 MR--YQEARITVLTNAPVARIDRDEKAVELADGRSVAYDRLLLATGAPPRVFPGAPENSE 120
Query: 121 GVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLP 180
+ L++ D I+ + +K VIG G IGLE A KLG EV V+E L +L
Sbjct: 121 RIRMLRTHADALAIRAALAPG--RKLAVIGGGFIGLELAATARKLGAEVGVIEGLPRILS 178
Query: 181 TMLDKDMASIVQKNMEEHGVKFRFGVGVSEI--IGNPVEAVKIGDETVEADLVLVATGVR 238
+ K++A+IV + GVK G ++ I G+ + ++ ADL++V G
Sbjct: 179 RGVPKEIAAIVDERHRREGVKILCGARIATIGHQGDGANILLADGGSIAADLLVVGIGAT 238
Query: 239 ANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEV-IDAVTGKRTLSQLGTSAVRM 297
N +LA+ AGL V GI V+E L+TSDPDI+A GDC + G+R + +A
Sbjct: 239 PNTELAEAAGLAVEDGIPVDETLRTSDPDIFAAGDCCSFPLSHYHGRRVRLEAWRNAQEQ 298
Query: 298 AKVAAEHIAG 307
+ A ++ G
Sbjct: 299 GTLVAANLMG 308
>sp|Q07946|BEDA_PSEPU BENZENE 1,2-DIOXYGENASE SYSTEM FERREDOXIN--NAD(+) REDUCTASE
COMPONENT >gi|538680|pir||JN0810 benzene 1,2-dioxygenase
(EC 1.14.12.3) ferredoxin reductase component -
Pseudomonas putida plasmid pHMT112
>gi|309858|gb|AAA17761.1| (AF148496) BedA [Pseudomonas
putida]
Length = 410
Score = 136 bits (340), Expect = 4e-31
Identities = 99/312 (31%), Positives = 164/312 (51%), Gaps = 9/312 (2%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYS-PCALPHVISGTIEKPEDVIVF 61
V +IG+G AG A LR + I +IG+E + Y P V+ G+ E+P +
Sbjct: 5 VAIIGNGVAGFTTAQALRAEGYEGRISLIGEEQHLPYDRPSLSKAVLDGSFEQPPRLA-- 62
Query: 62 PNEFYEKQKIKMMLGVEAKKIDRERKVV-ITDKGEVPYDKLVLATGSKAFIPPIKGVENE 120
++Y + I+M+ G E +D ++K++ + D + D +V+ATGS+A + + G +
Sbjct: 63 EADWYSEASIEMLTGSEVTDLDTQKKMISLNDGSTISADAIVIATGSRARMLSLPGSQLP 122
Query: 121 GVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLP 180
GV TL++ DV+ +++ + +++G GLIG E A KLG+ V ++E + LL
Sbjct: 123 GVVTLRTYGDVQLLRDSWTPNT--RLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLV 180
Query: 181 TMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIG-NPVEAVKIGD-ETVEADLVLVATGVR 238
+L + + + ++ + E GV+ GVS G +E V + D + AD L+ G
Sbjct: 181 RVLGRRIGAWLRGLLTEQGVQVELKTGVSGFSGEGQLEKVMVNDGRSFIADNALICVGAD 240
Query: 239 ANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMA 298
LA+ AGLE +RG+VV+ TS I+A+GD A GKR+L + +A R A
Sbjct: 241 PADQLARQAGLECDRGVVVDHRGATSAKGIFAVGDVATWPLHSGGKRSL-ETYMNAQRQA 299
Query: 299 KVAAEHIAGKDV 310
A+ I GK+V
Sbjct: 300 TAVAKAILGKEV 311
>emb|CAA08856.1| (AJ009826) nitrite reductase (NADPH) [Phaeosphaeria nodorum]
>gi|3378501|emb|CAA08858.1| (AJ009827) nitrite reductase
[Phaeosphaeria nodorum]
Length = 1141
Score = 136 bits (340), Expect = 4e-31
Identities = 120/410 (29%), Positives = 193/410 (46%), Gaps = 35/410 (8%)
Query: 2 RVVVIGSGTAGSNFALFLRKLD---RKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDV 58
++VV+G G G F L K D R+ +++VIG+EP + Y+ L + E++
Sbjct: 73 KIVVVGLGMVGIAFIEKLMKYDVKRREYDVVVIGEEPHLAYNRVGLTSFFQHRLV--ENL 130
Query: 59 IVFPNEFYEKQ---KIKMMLGVEAKKIDRERKVVITDKGE-VPYDKLVLATGSKAFIPP- 113
+ P E+Y + L +ID K V T G+ VPYD LVLATGS A +P
Sbjct: 131 YLNPKEWYSSMPEGSLNYHLNTMVTEIDSYNKTVKTSSGDTVPYDILVLATGSDALLPRH 190
Query: 114 IKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLG--MEVLV 171
G + +GVF ++++D++ + E+ R V+G GL+GLE A+A L +V +
Sbjct: 191 TPGHDAKGVFVYRTIEDLQNLIEFASSRKGTTGAVVGGGLLGLEAAKAMMDLEDFGQVRL 250
Query: 172 VELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVK----IGDETVE 227
+E +L LD D +V + + G+ V +I+ AVK E +E
Sbjct: 251 IERNRWVLSRQLDGDAGGMVVEQVRALGLDVMLSKRVGKILTTEENAVKGVVFEDGEEME 310
Query: 228 ADLVLVATGVRANVDLAKDAGLEV---NRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGK 284
+ A G+++ +LA+ +G++ GIVV L TS PDIYAIG+CA + G
Sbjct: 311 CSCISFAIGIKSRDELARKSGIKCADRGGGIVVGSDLTTSKPDIYAIGECASWENQTFG- 369
Query: 285 RTLSQLGTSAVRMAKVAAEHI----AGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKR 340
L V A V A ++ A KF+ + +L +E+ +FG + A R
Sbjct: 370 -----LIAPGVEQADVLAFNLTQAKAHAPRKFKSPDLSTKLKLLGVEVASFG--DFFADR 422
Query: 341 EGIDVVVGKFRGSTKPEYYPGGKPITVK----LIFRKEEGRLIGAQIVGG 386
+G + G+ R K K +T K +++K + G ++GG
Sbjct: 423 DGPKNMPGRQRAEKKEAGGINVKALTYKDPFQQVYKKYLFTMDGKYLLGG 472
>emb|CAA75809.1| (Y15883) rubredoxin reductase [Acinetobacter calcoaceticus]
Length = 338
Score = 136 bits (340), Expect = 4e-31
Identities = 103/314 (32%), Positives = 161/314 (50%), Gaps = 15/314 (4%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFP 62
+V+IGSG AG RKL+ + E+ +I + + Y+ L + +SG + PE + +
Sbjct: 4 IVIIGSGMAGYTLDREFRKLNPEHELDMICADDAVNYAKPTLSNALSGN-KAPEQIPLGD 62
Query: 63 NEFYEKQ-KIKMMLGVEAKKIDRERKVVITDKGEV----PYDKLVLATGSKAFIPPIKGV 117
E Q K++++ K I+ E + +K PY KLVLA G+ I G
Sbjct: 63 AEKMSTQLKLQILSETWVKAINPETHELKLEKNGQETIQPYSKLVLAVGANPTRLAIAGD 122
Query: 118 ENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEH 177
++ + + SL D R +E + KR K+ V++GAGLIG E A G +V V++L
Sbjct: 123 GSDDIHVVNSLIDYRAFRENLAKRQDKRVVILGAGLIGCEFANDLQHTGHQVTVIDLSPR 182
Query: 178 LLPTMLDKDMASIVQKNMEE--HGVKFRFGVGVSEIIGNPVEAVKIGD-ETVEADLVLVA 234
L +L +A QK + H V VS+I AV + + +T+ AD+VL A
Sbjct: 183 PLGRLLPAHIADAFQKIWRKRIHFVLSTTVEKVSKINDGQDYAVTLANGQTLVADIVLSA 242
Query: 235 TGVRANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSA 294
G++ N+DLAK AG+ +RGI+ N L+T+ D YAIGDCAEV TL
Sbjct: 243 IGLQPNIDLAKHAGVHTSRGILTNSLLETNLEDTYAIGDCAEV------NGTLLPYEMPI 296
Query: 295 VRMAKVAAEHIAGK 308
++ A+ A+ ++G+
Sbjct: 297 MQQARALAKTLSGE 310
>pir||H70939 probable nirB protein - Mycobacterium tuberculosis (strain H37RV)
>gi|2909456|emb|CAA17344.1| (AL021929) nirB
[Mycobacterium tuberculosis]
Length = 853
Score = 136 bits (339), Expect = 5e-31
Identities = 110/406 (27%), Positives = 189/406 (46%), Gaps = 38/406 (9%)
Query: 3 VVVIGSGTAGSNF--ALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
+VV+G G G A+ R D I V+ +E Y L S T ++
Sbjct: 16 IVVVGHGMVGHRLVEAVRARDADGSLRITVLAEEGDAAYDRVGLT---SYTESWDRALLA 72
Query: 61 FP-NEFYEKQKIKMMLGVEAKKIDRERKVVITDKGEVP-YDKLVLATGSKAFIPPIKGVE 118
P N++ Q+++++L +IDR K V+T G+ YD LVLATGS AF+PP+ G +
Sbjct: 73 LPGNDYAGDQRVRLLLNTRVTQIDRATKSVVTAAGQRHRYDTLVLATGSYAFVPPVPGHD 132
Query: 119 NEGVFTLKSLDDVRRIK----EYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVEL 174
++ DD+ I+ + + VVIG GL+GLE A A + G++ VVE+
Sbjct: 133 LPACHVYRTFDDLDAIRAGAQRTLDGGHTDGGVVIGGGLLGLEAANALRQFGLQTHVVEM 192
Query: 175 LEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEI------IGNPVEAVKIGD-ETVE 227
+ L+ +D+ +++ + + + G+ G G I G+ V++ D E ++
Sbjct: 193 MPRLMAQQIDEAGGALLARMIADLGIAVHVGTGTESIESVKHSDGSVWARVRLSDGEVID 252
Query: 228 ADLVLVATGVRANVDLAKDAGLEV--NRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKR 285
A +V+ A G+R +LA+ AGL + G++ + +TSDPDIYA+G+ A + G
Sbjct: 253 AGVVIFAAGIRPRDELARAAGLAIGDRGGVLTDLSCRTSDPDIYAVGEVAAIDGRCYG-- 310
Query: 286 TLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDV 345
L A+V A+ + +F + +L +++ +FG A ++V
Sbjct: 311 ----LVGPGYTSAEVVADRLLDGSAEFPEADLSTKLKLLGVDVASFG-DAMGATENCLEV 365
Query: 346 VVGKFRGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWG 391
V+ + K Y KL+ + L+G +VG +G
Sbjct: 366 VI---NDAVKRTY--------AKLVLSDDATTLLGGVLVGDASSYG 400
>gb|AAC31188.1| (AF076240) putative ferredoxin reductase MocF [Rhizobium
leguminosarum bv. viciae]
Length = 421
Score = 136 bits (339), Expect = 5e-31
Identities = 92/280 (32%), Positives = 147/280 (51%), Gaps = 13/280 (4%)
Query: 2 RVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVF 61
+++++G G G+ A LR+ +I +IG EP + Y L + P+ V
Sbjct: 14 KIIIVGGGECGARAAFALREQGFNGDITLIGAEPHLPYERPPLSKTGLASAAPPQ--YVA 71
Query: 62 PNEFYEKQKIKMMLGVEAKKIDRERKVV-ITDKGEVPYDKLVLATGSKAFIPPIKGVENE 120
YE+ +I ++ GV +DR+ K+V ++D + PYD+L+LATG++ P GV +
Sbjct: 72 GPARYEEARITILTGVPVDTVDRQSKLVRLSDGRKFPYDQLLLATGARP--RPFAGVSGD 129
Query: 121 G----VFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLE 176
+ L++ D I E + K V+G G IGLE A KLG EVL++E
Sbjct: 130 PGLGRICMLRNHGDAVAIHEALAPG--KSLAVVGGGFIGLEIAATARKLGAEVLLIESSP 187
Query: 177 HLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEII--GNPVEAVKIGDETVEADLVLVA 234
+L + ++A +V + + GV G ++ I + V+ + T AD+V+V
Sbjct: 188 RVLSRGVPAEIAKVVTERHRQEGVNILCGEQITSIATENDKVQILFANGTTRLADIVVVG 247
Query: 235 TGVRANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDC 274
GV NV+LA+ AGL ++ GI V+ L+TSDPDI+A GDC
Sbjct: 248 IGVIPNVELAEAAGLLIDNGIAVDATLRTSDPDIFAAGDC 287
>gb|AAF04734.1| (AF101442) NADH oxidase [Streptococcus pyogenes]
Length = 246
Score = 136 bits (338), Expect = 6e-31
Identities = 86/245 (35%), Positives = 133/245 (54%), Gaps = 17/245 (6%)
Query: 52 IEKPEDVIVFPNEFYEKQKIKMMLGVEAKKIDRERKVV---ITDKGEVP-YDKLVLATGS 107
I PE + E E K+ + + ID + K V + K V YDKL+ ATGS
Sbjct: 2 IAGPEGLFYSDKEELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGS 61
Query: 108 KAFIPPIKGVE-NEGVFTLKS-LDDVRRIKEY---------IGKRNPKKAVVIGAGLIGL 156
+ +PPIKG E EG ++ L++++ +K Y + ++ K+ V+GAG IG+
Sbjct: 62 QPILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSADVIAKLENKDIKRVAVVGAGYIGV 121
Query: 157 EGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGN-P 215
E AEAF + G EV+++++++ L D+D+ ++ KNMEEHG++ FG V E+ GN
Sbjct: 122 ELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLAFGETVKEVAGNGK 181
Query: 216 VEAVKIGDETVEADLVLVATGVRANVDLAK-DAGLEVNRGIVVNEYLQTSDPDIYAIGDC 274
VE + + D+V++A G R N L L N +VN+ +TS P +YAIGDC
Sbjct: 182 VEKIITDKNEYDVDMVILAVGFRPNTTLGNGKIDLFRNGAFLVNKRQETSIPGVYAIGDC 241
Query: 275 AEVID 279
A + D
Sbjct: 242 ATIYD 246
>gb|AAC43635.1| (U15298) chlorobenzene dioxygenase, NADH-ferredoxin reductase
[Pseudomonas sp.] >gi|1588373|prf||2208373D
chlorobenzene dioxygenase [Pseudomonas sp.]
Length = 410
Score = 133 bits (331), Expect = 4e-30
Identities = 98/310 (31%), Positives = 157/310 (50%), Gaps = 9/310 (2%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYS-PCALPHVISGTIEKPEDVIVF 61
V +IG+G AG A LR + I +IG EP + Y P V+ G++E P ++
Sbjct: 5 VAIIGNGVAGFTTAQALRAEGFEGRISLIGNEPHLPYDRPSLSKAVLGGSLEHPP--VLA 62
Query: 62 PNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGEV-PYDKLVLATGSKAFIPPIKGVENE 120
++Y + +I M+ G ++ + + + D G D +V+ATGS+A + G +
Sbjct: 63 EADWYGEARIDMLSGRSVTNLNVDARTISLDDGSTFAADAIVIATGSRARTLALPGSQLT 122
Query: 121 GVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLP 180
GV TL++ DDVR + G + V+ G GLIG E A KLG+ V ++E + LL
Sbjct: 123 GVVTLRTYDDVRPLCR--GWTPATRLVIAGGGLIGCEVATTARKLGLAVTILESADELLV 180
Query: 181 TMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGD-ETVEADLVLVATGVR 238
+L + + + ++ + E GV+F G GV+ G+ +E V D AD LV G
Sbjct: 181 RVLGRRIGAWLRGLLTELGVRFELGTGVAGFSGDDRLEEVLASDGRRFAADNALVCIGAE 240
Query: 239 ANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMA 298
LA+ AGL +RG++V+++ T ++A+GD A G+R+L + +A R A
Sbjct: 241 PEDQLARQAGLSCDRGVIVDDHGATHAEGVFAVGDAASWPLRDGGRRSL-ETYMNAQRQA 299
Query: 299 KVAAEHIAGK 308
A I GK
Sbjct: 300 AAVAAAILGK 309
>gb|AAD45419.1| (U65001) naphthalenesulfonate dioxygenase reductase subunit
[Sphingomonas sp.]
Length = 409
Score = 132 bits (329), Expect = 7e-30
Identities = 110/343 (32%), Positives = 164/343 (47%), Gaps = 11/343 (3%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYS-PCALPHVISGTIEKPEDVIVF 61
V ++G+ AG A LR++ I +IG+EP Y P + E ++ +
Sbjct: 4 VAIVGANLAGGRAAEALRQVGFDGRITLIGEEPWRPYERPPLSKEFLWNPAEMSDNFFLQ 63
Query: 62 PNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGE-VPYDKLVLATGSKAFIPPIKGVENE 120
+Y +I M+L A+ ID V G+ V DK++LATG A + G +
Sbjct: 64 DENWYSDNRIDMLLSTRAEAIDLNAGGVRLSGGQLVAADKVLLATGGHARKLNLAGADCV 123
Query: 121 GVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLP 180
V L++ DD R+ + R + V++G G+IG E A + KLG EV VE L +
Sbjct: 124 NVHYLRTRDDAARMA--LDLRQGARVVIVGMGVIGAEVAASAIKLGCEVTAVEPLAGPME 181
Query: 181 TMLDKDMASIVQKNMEEHGVKFRFGVGVS--EIIGNPVEAVKIGDETV-EADLVLVATGV 237
L K + + + GVK F GV+ + V AV+I D TV D V+V G+
Sbjct: 182 RALGKRFGQWLGEEHRKRGVKTHFNRGVTGFKFADGRVSAVEIDDGTVIPCDAVVVGVGI 241
Query: 238 RANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRM 297
LA DAGL VN GIVV+ QTS+ I+A GD AE D G R + +A
Sbjct: 242 IPATSLAVDAGLTVNNGIVVDRRCQTSNKAIFAAGDVAEQ-DGFFGGRFRQETYQNASDQ 300
Query: 298 AKVAAEHIAGKDVKF-RPVFNTAITELFDLEIGTFGMTEERAK 339
A+ AA + G +V + +P++ ++ FDL I G +A+
Sbjct: 301 AQAAASAMLGHEVDYCKPMWYW--SDQFDLNIQFCGQIPAQAE 341
>pir||I40794 dihydrolipoamide dehydrogenase (EC 1.8.1.4) [validated] -
Clostridium magnum >gi|472330|gb|AAA21748.1| (L31844)
dihydrolipoamide dehydrogenase [Clostridium magnum]
Length = 578
Score = 132 bits (328), Expect = 1e-29
Identities = 114/374 (30%), Positives = 197/374 (52%), Gaps = 60/374 (16%)
Query: 70 KIKMMLGVEAKKIDRERKVVITDKG---EVPYDKLVLATGSKAFIPPIKGVENEGVFTLK 126
K+K++ G AK ++ +V + G +V +D ++ATGS FIP I+G + GV
Sbjct: 218 KVKVIKGT-AKFESKDTILVTKEDGVAEKVNFDNAIIATGSMPFIPEIEGNKLSGV---- 272
Query: 127 SLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKD 186
+D + + NP+ +IG G+IG+E A F LG +V ++E+L H+LP M D++
Sbjct: 273 -IDSTGALSL---ESNPESIAIIGGGVIGVEFASIFNSLGCKVSIIEMLPHILPPM-DRE 327
Query: 187 MASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKI------GDETVEADLVLVATGVRAN 240
++ I + + G+ V+ I + +K+ G+E+++ + VL+A G R+N
Sbjct: 328 ISEIAKAKLIRDGININNNCKVTR-IEQGEDGLKVSFIGDKGEESIDVEKVLIAVGRRSN 386
Query: 241 VDLAKDAGLEVNR--------GIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGT 292
++ GL+V + I+VN+ ++T+ IYAIGDC TGK L+ + +
Sbjct: 387 IE-----GLDVEKIGVKTEGGSIIVNDKMETNVEGIYAIGDC-------TGKIMLAHVAS 434
Query: 293 SAVRMAKVAAEHIAGKDVK--FRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKF 350
VAAE+I G++ K ++ V T+ E+ + G+TEE+AK +GID VGKF
Sbjct: 435 D---QGVVAAENIMGQNKKMDYKTVPACVYTK---PELASVGLTEEQAKEKGIDYKVGKF 488
Query: 351 R----GSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALA-QMGAK 405
+ G + GG +K+I K+ ++G I+G ++T +ALA ++ A
Sbjct: 489 QLAANGKSLIMNETGG---VIKIITDKKYEEILGVHILGPRAT--DLITEAALALRLEAT 543
Query: 406 VEDIAYLETAYAPP 419
+E+I + T +A P
Sbjct: 544 LEEI--ITTVHAHP 555
>gi|10956962 ferredoxin reductase subunit aromatic oxygenase [Sphingomonas
aromaticivorans] >gi|11255973|pir||T31254 biphenyl
dioxygenase homolog - Sphingomonas aromaticivorans
plasmid pNL1 >gi|3378395|gb|AAD03978.1| (AF079317)
ferredoxin reductase subunit aromatic oxygenase
[Sphingomonas aromaticivorans]
Length = 408
Score = 131 bits (327), Expect = 1e-29
Identities = 98/332 (29%), Positives = 165/332 (49%), Gaps = 11/332 (3%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYS-PCALPHVISGTIEKPEDVIVF 61
+ V+G+ AG LR+ I +IG+EP Y P V+ P++ +
Sbjct: 4 IAVVGANLAGGRAVESLRQAGFDGRITLIGEEPWRPYERPPLSKEVLWDPANVPDNFFLH 63
Query: 62 PNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGE-VPYDKLVLATGSKAFIPPIKGVENE 120
+Y +I+M LG A+ +D V G+ V D+++L TG A ++G +
Sbjct: 64 DEAWYAANRIEMRLGTRAEALDLAASAVRLTGGDLVQADRILLTTGGSARKLNMEGADAA 123
Query: 121 GVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLP 180
V L++ DD R+ + R+ + V+IG G+IG E A + KLG V +E L +
Sbjct: 124 NVHYLRTRDDATRMATDL--RDGARIVIIGMGVIGAEVAASAVKLGCRVTAIEPLAAPMI 181
Query: 181 TMLDKDMASIVQKNMEEHGVKFRFGVGVS--EIIGNPVEAVKIGDET-VEADLVLVATGV 237
L + + + GV RFG GV+ +++ V V++ D + V+ D V+V G+
Sbjct: 182 RALGPQFGQWLGEEHRQRGVDTRFGRGVNAMKVLDGRVTQVELDDGSLVDCDAVVVGVGI 241
Query: 238 RANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRM 297
+ LA+DAG+ N GI+V+ +TS+ +++A GD AE D+ G + +A
Sbjct: 242 VPEISLARDAGIVTNNGIIVDRQCRTSNENVFAAGDVAEQ-DSFFGGHIRQETYQNAADQ 300
Query: 298 AKVAAEHIAGKDVKF-RPVFNTAITELFDLEI 328
A+ AA + G+DV + +PV+ ++ FDL I
Sbjct: 301 AQAAALAMLGQDVDYCKPVWYW--SDQFDLNI 330
>pir||S70585 nitrite reductase (NADH) (EC 1.6.6.4) - Aspergillus parasiticus
>gi|1477476|gb|AAB18726.1| (U39557) nitrite reductase
[Aspergillus parasiticus]
Length = 400
Score = 130 bits (324), Expect = 3e-29
Identities = 111/367 (30%), Positives = 177/367 (47%), Gaps = 29/367 (7%)
Query: 2 RVVVIGSGTAGSNFALFLRKLD---RKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDV 58
R+VV+G G +F L K D RK +I+VIG+EP + Y+ L ED+
Sbjct: 43 RIVVVGLGMVAISFLEKLVKQDSERRKYDIVVIGEEPHVAYNRVGLSSFFEH--RNIEDL 100
Query: 59 IVFPNEFYEKQKIKMM---LGVEAKKIDRERKVVITDKGE-VPYDKLVLATGSKAFIPP- 113
+ P E+Y K + L I +RK V T G+ + Y LVLATGS A +P
Sbjct: 101 YLNPKEWYGSFKDRSFDYHLNTRVTDIFPDRKTVKTSTGDTIAYVLLVLATGSDAVLPTH 160
Query: 114 IKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLG--MEVLV 171
G + GVF +++ D+ R+ E+ K + A +G GL+GLE A+A L +V +
Sbjct: 161 TPGYDANGVFVYRTISDLERLIEFASKHQGETATTVGGGLLGLEAAKAMTDLEDFGKVKL 220
Query: 172 VELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEI---IGNPVEAVKIGD-ETVE 227
++ + +L L+ D ++V + + E G+ V++I N V + D E ++
Sbjct: 221 IDRNKWVLARQLEADAGTLVTRKIRELGLDVLHQKRVAKIKTDDNNNVTGIVFEDGEEID 280
Query: 228 ADLVLVATGVRANVDLAKDAGLEV--NRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKR 285
V GVR +L AG++ G V+NE LQTS P+IYAIG+CA + G
Sbjct: 281 CCCVCFRIGVRPRDELGTTAGIQCASRGGFVINESLQTSIPEIYAIGECASCANQTFG-- 338
Query: 286 TLSQLGTSAVRMAKVAAEHIAGKDVK---FRPVFNTAITELFDLEIGTFGMTEERAKREG 342
+ + MA V A ++ D + FR + +L +++ +FG + A R+G
Sbjct: 339 ----IIAPGIEMADVLAFNLTNPDKEPKSFRRPHLSTKLKLLGVDVASFG--DFFADRDG 392
Query: 343 IDVVVGK 349
+ G+
Sbjct: 393 PKFLPGR 399
>sp|P13452|TODA_PSEPU TOLUENE 1,2-DIOXYGENASE SYSTEM FERREDOXIN--NAD(+) REDUCTASE
COMPONENT >gi|94930|pir||D36516 toluene dioxygenase (EC
1.14.12.11) ferredoxin reductase component - Pseudomonas
putida >gi|151604|gb|AAA26008.1| (J04996) reductase
(todA) [Pseudomonas putida]
>gi|9957550|gb|AAG09411.1|AF180147_3 (AF180147) toluene
dioxygenase reductase TobA [Pseudomonas putida]
Length = 410
Score = 129 bits (322), Expect = 5e-29
Identities = 95/312 (30%), Positives = 159/312 (50%), Gaps = 9/312 (2%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYS-PCALPHVISGTIEKPEDVIVF 61
V +IG+G G A LR + I +IG EP + Y P V+ G++E+P I+
Sbjct: 5 VAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPP--ILA 62
Query: 62 PNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGE-VPYDKLVLATGSKAFIPPIKGVENE 120
++Y + +I M+ G E +D + + + D G + D +V+ATGS+A + G +
Sbjct: 63 EADWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRARTMALPGSQLP 122
Query: 121 GVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLP 180
GV TL++ DV+ +++ + + +++G GLIG E A KLG+ V ++E + LL
Sbjct: 123 GVVTLRTYGDVQVLRD--SWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLV 180
Query: 181 TMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIG-NPVEAVKIGD-ETVEADLVLVATGVR 238
+L + + + ++ + E GV+ G GV G +E V D + AD L+ G
Sbjct: 181 RVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAE 240
Query: 239 ANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMA 298
LA+ AGL +RG++V+ T ++A+GD A G+R+L + +A R A
Sbjct: 241 PADQLARQAGLACDRGVIVDHCGATLAKGVFAVGDVASWPLRAGGRRSL-ETYMNAQRQA 299
Query: 299 KVAAEHIAGKDV 310
A I GK+V
Sbjct: 300 AAVAAAILGKNV 311
>pir||C70640 hypothetical protein Rv0688 - Mycobacterium tuberculosis (strain
H37RV) >gi|1806154|emb|CAB06451.1| (Z84395) hypothetical
protein Rv0688 [Mycobacterium tuberculosis]
Length = 406
Score = 129 bits (322), Expect = 5e-29
Identities = 97/335 (28%), Positives = 176/335 (51%), Gaps = 13/335 (3%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYS-PCALPHVISGTIEKPEDVIVF 61
+V++G G A + A LR+ + ++ E + Y P V+ ++ DV +
Sbjct: 18 IVIVGGGLAAARTAEQLRRAGYSGRLTIVSDEVHLPYDRPPLSKEVLRSEVD---DVALK 74
Query: 62 PNEFYEKQKIKMMLGVEAKKIDR-ERKVVITDKGEVPYDKLVLATGS-KAFIPPIKGVEN 119
P EFY+++ I + LG A +D E+ V + D + YD+LV+ATG IP + ++
Sbjct: 75 PREFYDEKDIALRLGSAAVSLDTGEQTVTLADGTVLGYDELVIATGLVPRRIPSLPDLD- 133
Query: 120 EGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLL 179
G+ L+S D+ ++++ + AVV+GAG IG E A + LG++V++VE L
Sbjct: 134 -GIRVLRSFDESMALRKHASAA--RHAVVVGAGFIGCEVAASLRGLGVDVVLVEPQPAPL 190
Query: 180 PTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIG-NPVEAVKIGDET-VEADLVLVATGV 237
++L + + +V + + GV R GV V+E+ G V+AV + D T + ADLV+V G
Sbjct: 191 ASVLGEQIGQLVTRLHRDEGVDVRTGVTVAEVRGKGHVDAVVLTDGTELPADLVVVGIGS 250
Query: 238 RANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRM 297
+ + +G+EV+ G++ ++ +TS P+++A+GD A D + G + + ++
Sbjct: 251 TPATEWLEGSGVEVDNGVICDKAGRTSAPNVWALGDVASWRDPM-GHQARVEHWSNVADQ 309
Query: 298 AKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFG 332
A+V + G DV V ++ +D++I G
Sbjct: 310 ARVVVPAMLGTDVPTGVVVPYFWSDQYDVKIQCLG 344
>gb|AAC46393.1| (U78099) TecA4 [Burkholderia sp. PS12]
Length = 410
Score = 129 bits (322), Expect = 5e-29
Identities = 97/310 (31%), Positives = 156/310 (50%), Gaps = 9/310 (2%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYS-PCALPHVISGTIEKPEDVIVF 61
V +IG+G AG A LR + I +IG EP + Y P V+ G++E P ++
Sbjct: 5 VAIIGNGVAGFTTAQALRAEGFEGRISLIGNEPHLPYDRPSLSKAVLGGSLEHPP--VLA 62
Query: 62 PNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGEV-PYDKLVLATGSKAFIPPIKGVENE 120
++Y + +I M+ G ++ + + + D G D +V+ATGS+A + G +
Sbjct: 63 EADWYGEARIDMLSGRSVTNLNVDARTISLDDGSTFAADAIVIATGSRARTLALPGSQLT 122
Query: 121 GVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLP 180
GV TL++ DDVR + G + V+ G GLIG E A KLG+ V ++E + LL
Sbjct: 123 GVVTLRTNDDVRPLCR--GWTPATRLVIAGGGLIGCEVATTARKLGLAVTILESADELLV 180
Query: 181 TMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGD-ETVEADLVLVATGVR 238
+L + + + ++ + E GV+ G GV+ G+ +E V D AD LV G
Sbjct: 181 RVLGRRIGAWLRGLLTELGVRVELGTGVAGFSGDDRLEEVLASDGRRFAADNALVCIGAE 240
Query: 239 ANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMA 298
LA+ AGL +RG++V+++ T ++A+GD A G+R+L + +A R A
Sbjct: 241 PEDQLARQAGLSCDRGVIVDDHGATHAEGVFAVGDAASWPLRDGGRRSL-ETYMNAQRQA 299
Query: 299 KVAAEHIAGK 308
A I GK
Sbjct: 300 AAVAAAILGK 309
>emb|CAA06973.1| (AJ006307) reductase [Ralstonia sp.]
Length = 410
Score = 129 bits (321), Expect = 6e-29
Identities = 96/312 (30%), Positives = 157/312 (49%), Gaps = 9/312 (2%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYS-PCALPHVISGTIEKPEDVIVF 61
V +IG+G AG A LR + I +IG EP + Y P V+ G++E+P ++
Sbjct: 5 VAIIGNGVAGVTTAQALRAEGFEGRISLIGSEPHLPYDRPSLSKAVLDGSLERPP--VLA 62
Query: 62 PNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGE-VPYDKLVLATGSKAFIPPIKGVENE 120
++Y + I M+ G + I+ E + + D G + D +V+ATGS+A + G +
Sbjct: 63 EADWYGEANIDMLTGPQVTAINAETRTISLDDGTTLSADAIVIATGSRARTLALPGSQLG 122
Query: 121 GVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLP 180
GV TL++ DDV+ +++ + ++ G GLIG E A KLG+ V ++E + LL
Sbjct: 123 GVVTLRTYDDVQSLRD--SWTPATRLLIAGGGLIGCEVATTARKLGLPVTILEAGDELLV 180
Query: 181 TMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIG-NPVEAVKIGD-ETVEADLVLVATGVR 238
+L + + + ++ + E GV+ G GV+ G +E V D AD L+ G
Sbjct: 181 RVLGRRIGAWLRGRLTELGVQVELGAGVAGFSGEGRLEQVLASDGRFFAADSALICIGAE 240
Query: 239 ANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMA 298
LA+ AGL +RG++V+ T ++A+GD A G+R+L + +A R A
Sbjct: 241 PADQLARQAGLACDRGVIVDHCGATLAEGVFAVGDAASWPLRAGGRRSL-ETYMNAQRQA 299
Query: 299 KVAAEHIAGKDV 310
A I GK V
Sbjct: 300 AAVAAAILGKAV 311
>pir||S51760 ferredoxin reductase BPH - Rhodococcus globerulus
>gi|607175|emb|CAA56349.1| (X80041) ferredoxin reductase
BPH [Rhodococcus globerulus] >gi|927235|gb|AAB07753.1|
(U27591) ferrodoxin reductase [Rhodococcus sp. M5]
>gi|3059207|dbj|BAA25622.1| (D88020) ferredoxin
reductase [Rhodococcus erythropolis]
Length = 412
Score = 128 bits (318), Expect = 1e-28
Identities = 95/304 (31%), Positives = 151/304 (49%), Gaps = 8/304 (2%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPH-VISGTIEKPEDVIVF 61
+ VIG+G AG + A LR + +IG+E Y AL V++G +P ++
Sbjct: 5 IAVIGNGVAGVSAAQTLRLEGFDGRLFLIGEEEHEPYDRTALSKAVLAGETAEPPPLMT- 63
Query: 62 PNEFYEKQKIKMMLGVEAKKIDRERKVV-ITDKGEVPYDKLVLATGSKAFIPPIKGVENE 120
+E E ++ + G +D + D G + D+L+L TG++A +P + GV
Sbjct: 64 -SEQLEALDVESITGRTVVGVDSAAGTLRFADGGTLASDRLLLVTGARARVPRVPGVALS 122
Query: 121 GVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLP 180
GV TL++ DV+ +++ R V++G GLIG E A K+G+EV ++E LL
Sbjct: 123 GVHTLRTSGDVKALRQ--AWRPGAHVVIVGGGLIGCEVATTARKVGLEVTLLEAGSELLT 180
Query: 181 TMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGD-ETVEADLVLVATGVR 238
+L + + + ++ +E GV+ R V+E +G V AV D + D VLV G
Sbjct: 181 RVLGRQVGAWCRQRLEGLGVEVRLNTAVAEFVGRDYVSAVMTSDGNRFDVDSVLVCVGAE 240
Query: 239 ANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMA 298
N LA+ GL+ +RGIVV+ T P I+A GD A G+R+L S + +
Sbjct: 241 PNTVLAQSLGLKCDRGIVVDAAGSTDHPTIFAAGDAASWPLRSGGRRSLETYLNSQKQAS 300
Query: 299 KVAA 302
V A
Sbjct: 301 AVVA 304
>emb|CAB51550.1| (AJ244019) ORF1 [Streptomyces coelicolor A3(2)]
>gi|6759564|emb|CAB69757.1| (AL137187) putative
reductase [Streptomyces coelicolor A3(2)]
Length = 421
Score = 127 bits (316), Expect = 2e-28
Identities = 104/317 (32%), Positives = 152/317 (47%), Gaps = 12/317 (3%)
Query: 4 VVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFPN 63
V++G G AG+ A LR +I++ E Y L E+ + V V
Sbjct: 9 VIVGGGLAGAKAAETLRTEGFTGRVILVCDERDHPYERPPLSKGYLLGKEERDSVFVHEP 68
Query: 64 EFYEKQKIKMMLGVEAKKIDRERKVVI--TDKGEVPYDKLVLATGSKAFIPPIKGVENEG 121
+Y + I++ LG IDR K V D V YDKL++ATG++ + G G
Sbjct: 69 AWYARHDIELHLGQTVVAIDRAAKTVHYGDDGTHVSYDKLLIATGAEPRRLDVPGTGLAG 128
Query: 122 VFTLKSLDDVRRIKEYIGK--RNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLL 179
V L+ L R+K + R+ V+ GAG IGLE A A + G EV V+E L
Sbjct: 129 VHHLRRLAHAERLKGVLATLGRDNGHLVIAGAGWIGLEVAAAAREYGAEVTVIEPAPTPL 188
Query: 180 PTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP--VEAVKIGD-ETVEADLVLVATG 236
+L ++ ++ + E GV+FRFGV ++EI+G V A + D E A VL A G
Sbjct: 189 HGVLGPELGAVFAELHESRGVRFRFGVKLTEIVGQDGVVLAARTDDGEEHPAHDVLAAIG 248
Query: 237 VRANVDLAKDAGLEV-----NRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLG 291
LA+ AGLE+ GIVV+++L+TSDPDI+A GD A A+ +
Sbjct: 249 AAPRTALAQAAGLEIADRAHGGGIVVDDHLRTSDPDIFAAGDVASFHHALFDTSLRVEHW 308
Query: 292 TSAVRMAKVAAEHIAGK 308
+A+ AA + G+
Sbjct: 309 ANALNGGPAAARAMLGR 325
>gb|AAF28060.1|AF123281_2 (AF123281) nitrite reductase [Pichia anomala]
Length = 1077
Score = 127 bits (315), Expect = 3e-28
Identities = 117/445 (26%), Positives = 202/445 (45%), Gaps = 71/445 (15%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEII--VIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
+V++G G G F + D E VIG+EP + Y+ L + + +++
Sbjct: 29 MVIVGLGMTGIAFLEKMLNNDTAQEYFYTVIGEEPYLAYNRVGLTEYFEH--KNFDKLLL 86
Query: 61 FPNEFYE---KQKIKMMLGVEAKKIDRERKVVITDKGE-VPYDKLVLATGSKAFIP---- 112
P FYE K + + ++DR+ KV T KG YD LV ATGS +P
Sbjct: 87 SPKTFYEERNKNRWNFKVDEAVVEVDRDHKVAKTSKGNSYEYDTLVFATGSNGVLPLQLL 146
Query: 113 --PIKGVENE--------GVFTLKSLDDVRRIKEY-----IGKRNPKKAVVIGAGLIGLE 157
P+ G + G F +++DD+ + + I K + K+A+V+G GL+GLE
Sbjct: 147 PDPVNGKSKQDYRNYREMGCFVYRTIDDLNSMLSFSEELSIPKDSTKRAIVVGGGLLGLE 206
Query: 158 GAEAFAKLGM--EVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEII--- 212
+A + V VV + LL +D+ +++ + + + GV R G V E++
Sbjct: 207 AGKALLDMKTFDNVTVVHRSKWLLSQQMDEKGGALLTEKVRDLGVTARTGTTVDELLFDN 266
Query: 213 GNPVEAVKIGD-ETVEADLVLVATGVRANVDLAKDAGLEVNR--GIVVNEYLQTSDPDIY 269
++AVK D E E L+ G++ ++A ++GL ++ G+ +N ++QTSDP+IY
Sbjct: 267 NGKLKAVKYNDGEIEECQLLCYTIGIQPRDEVAAESGLVCSKRGGVAINNFMQTSDPNIY 326
Query: 270 AIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIG 329
AIG+CA D G L + MA + + ++ KF + E + +IG
Sbjct: 327 AIGECASWNDKTFG------LIAPGITMADILSFNLI--QSKFH-----SPKEFSEPDIG 373
Query: 330 TFGMTEERAKREGIDVVV--GKFRGSTKPEYYPGG---------------KPITVKLIFR 372
T R K G++V F P++ P G + I +KLI
Sbjct: 374 T------RLKLMGVEVASFGDYFADKNGPKWLPKGYTLKKVRSLVYEDPIEGIYIKLILT 427
Query: 373 KEEGRLIGAQIVGGERVWGRIMTLS 397
++ L+G +VG + + + +++
Sbjct: 428 QDGKYLLGGILVGNTKQFTKFTSIA 452
>pir||A55581 nasC protein - Klebsiella pneumoniae >gi|473440|gb|AAB86902.1|
(L27431) nitrate reductase small subunit; NasC
[Klebsiella oxytoca]
Length = 398
Score = 126 bits (314), Expect = 4e-28
Identities = 101/344 (29%), Positives = 163/344 (47%), Gaps = 23/344 (6%)
Query: 2 RVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVF 61
++V+IG+G A + + + R+ I +IG EP Y+ L V+ G + +
Sbjct: 4 QLVIIGNGMAATPGEALVERDARRFSITIIGDEPRQAYNRIQLSPVL-GAEKTAGATRLL 62
Query: 62 PNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGEVPYDKLVLATGSKAFIPPIKGVENEG 121
P E+Y + + + G +D + + T GE+ +D+LV ATGS F+PP+ G+
Sbjct: 63 PAEWYSQHNVTVRAGETVTAVDMAARTLQTTAGELGWDELVFATGSLPFLPPLPGITLPH 122
Query: 122 VFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPT 181
VF ++L DV I G AVVIG G++G+E A A + G V ++ L+
Sbjct: 123 VFAFRTLADVEGILAIDG-----PAVVIGGGVLGVEAAAALRRHGDSVTLLHRGSWLMEQ 177
Query: 182 MLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKIGD-ETVEADLVLVATGVRAN 240
D + +Q + E G+ V S I V + D A V++ATGV+ N
Sbjct: 178 QTDAFVGEQLQMLLAERGIGC---VMESRIAAIDEHQVLLEDGRAFAASRVVLATGVQPN 234
Query: 241 VDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKV 300
LA+ +GL RGI+V+ L T+ P + A+G+C E+ G L +R A+V
Sbjct: 235 KRLAERSGLACGRGILVDRRLATAQPGVSALGECCEIDGQTWG------LVAPCLRQAEV 288
Query: 301 AAEH---IAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKRE 341
A+ I G+D +++ + T L +I F E RA +
Sbjct: 289 LADRLCAIPGEDFRWQ----DSGTRLKVTDIELFSAGELRADEQ 328
>sp|P22944|NIR_EMENI NITRITE REDUCTASE [NAD(P)H] >gi|83710|pir||JH0181 nitrite reductase
(NADH) (EC 1.6.6.4), long form - Emericella nidulans
>gi|168064|gb|AAA33315.1| (M58289) nitrite reductase
[Aspergillus nidulans]
Length = 1104
Score = 125 bits (312), Expect = 7e-28
Identities = 110/383 (28%), Positives = 184/383 (47%), Gaps = 44/383 (11%)
Query: 2 RVVVIGSGTAGSNFALFLRKLD---RKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDV 58
++VV+G G F L KLD RK +I+VIG+EP + Y+ L K ED+
Sbjct: 45 KIVVVGLGMVAVAFIEKLVKLDSERRKYDIVVIGEEPHIAYNRVGLSSYFEH--RKIEDL 102
Query: 59 IVFPNEFYEKQKIKMM---LGVEAKKIDRERKVVITDKGE-VPYDKLVLATGSKAFIPP- 113
+ P E+Y K + L + + K V T G+ V YD LVLATGS A +P
Sbjct: 103 YLNPKEWYGSFKDRSFDYYLNTRVTDVFPQHKTVKTSTGDIVSYDILVLATGSDAVLPTS 162
Query: 114 IKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLG--MEVLV 171
G + +G+F +++ D+ R+ E+ + V +G GL+GLE A+A L V +
Sbjct: 163 TPGHDAKGIFVYRTISDLERLMEFAANHKGQTGVTVGGGLLGLEAAKAMTDLEDFGSVKL 222
Query: 172 VELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEI---IGNPVEAVKIGD-ETVE 227
++ + +L LD D S+V K + + G++ V++I N V + D + ++
Sbjct: 223 IDRNKWVLARQLDGDAGSLVTKKIRDLGLEVLHEKRVAKIHTDDDNNVTGILFEDGQELD 282
Query: 228 ADLVLVATGVRANVDLAKDAGLEVNR--GIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKR 285
+ A G+R +L G++ + G V++E L+TS DIYAIG+CA + G
Sbjct: 283 CCCICFAIGIRPRDELGGSTGIQCAKRGGFVIDESLRTSVNDIYAIGECASWENQTFG-- 340
Query: 286 TLSQLGTSAVRMAKVAAEHIAGKDVK----FRPVFNTAITELFDLEIGTFGMTEERAKRE 341
+ + MA V + ++ D + RP +T + +L +++ +FG + A R+
Sbjct: 341 ----IIAPGIEMADVLSFNLTNPDKEPKRFNRPDLSTKL-KLLGVDVASFG--DFFADRD 393
Query: 342 GIDVVVGKFRGSTKPEYYPGGKP 364
G P++ PG +P
Sbjct: 394 G-------------PKFLPGQRP 403
>pir||PS0299 nitrite reductase (NADH) (EC 1.6.6.4), short form - Emericella
nidulans
Length = 771
Score = 125 bits (312), Expect = 7e-28
Identities = 110/383 (28%), Positives = 184/383 (47%), Gaps = 44/383 (11%)
Query: 2 RVVVIGSGTAGSNFALFLRKLD---RKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDV 58
++VV+G G F L KLD RK +I+VIG+EP + Y+ L K ED+
Sbjct: 45 KIVVVGLGMVAVAFIEKLVKLDSERRKYDIVVIGEEPHIAYNRVGLSSYFEH--RKIEDL 102
Query: 59 IVFPNEFYEKQKIKMM---LGVEAKKIDRERKVVITDKGE-VPYDKLVLATGSKAFIPP- 113
+ P E+Y K + L + + K V T G+ V YD LVLATGS A +P
Sbjct: 103 YLNPKEWYGSFKDRSFDYYLNTRVTDVFPQHKTVKTSTGDIVSYDILVLATGSDAVLPTS 162
Query: 114 IKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLG--MEVLV 171
G + +G+F +++ D+ R+ E+ + V +G GL+GLE A+A L V +
Sbjct: 163 TPGHDAKGIFVYRTISDLERLMEFAANHKGQTGVTVGGGLLGLEAAKAMTDLEDFGSVKL 222
Query: 172 VELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEI---IGNPVEAVKIGD-ETVE 227
++ + +L LD D S+V K + + G++ V++I N V + D + ++
Sbjct: 223 IDRNKWVLARQLDGDAGSLVTKKIRDLGLEVLHEKRVAKIHTDDDNNVTGILFEDGQELD 282
Query: 228 ADLVLVATGVRANVDLAKDAGLEVNR--GIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKR 285
+ A G+R +L G++ + G V++E L+TS DIYAIG+CA + G
Sbjct: 283 CCCICFAIGIRPRDELGGSTGIQCAKRGGFVIDESLRTSVNDIYAIGECASWENQTFG-- 340
Query: 286 TLSQLGTSAVRMAKVAAEHIAGKDVK----FRPVFNTAITELFDLEIGTFGMTEERAKRE 341
+ + MA V + ++ D + RP +T + +L +++ +FG + A R+
Sbjct: 341 ----IIAPGIEMADVLSFNLTNPDKEPKRFNRPDLSTKL-KLLGVDVASFG--DFFADRD 393
Query: 342 GIDVVVGKFRGSTKPEYYPGGKP 364
G P++ PG +P
Sbjct: 394 G-------------PKFLPGQRP 403
>dbj|BAA84715.1| (AB017795) ferredoxin reductase [Nocardioides sp.]
>gi|7619822|dbj|BAA94714.1| (AB031319) ferredoxin
reductase [Nocardioides sp. KP7]
Length = 414
Score = 125 bits (312), Expect = 7e-28
Identities = 106/368 (28%), Positives = 171/368 (45%), Gaps = 10/368 (2%)
Query: 5 VIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFPNE 64
+IG G AG + A LR+ ++++ E + Y L + D ++ P E
Sbjct: 9 LIGGGMAGVHAAEVLRRDGFDGRVLLVSAEQHLPYDRPPLSKALLRGELALADCLLRPPE 68
Query: 65 FYEKQKIKMMLGVEAKKIDRERKVVITDKGE-VPYDKLVLATGSKAFIPPIKGVENEGVF 123
+YE+Q I+++LGV +D R+ + GE V +D+ +LATG++ P VF
Sbjct: 69 WYEEQGIEVLLGVSVDALDPGRRTLRLSTGEQVEFDRALLATGARPRWPLGLAPGCGPVF 128
Query: 124 TLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTML 183
L+++DD I+ + R+ VV+G G +G E A + A LG V ++E + +L
Sbjct: 129 ALRTVDDCLAIRSRL--RSGASVVVVGGGFVGAELASSAASLGCRVTMLEAADAPFQRVL 186
Query: 184 DKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEA-VKIGDETV-EADLVLVATGVRANV 241
+ + + + G++ GV V+ P A + GD +AD+V+V GV N
Sbjct: 187 GRTVGELFGRFYATGGIRLVTGVQVTGTSVGPEGARLTAGDGRFWDADVVVVGVGVVPNT 246
Query: 242 DLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVA 301
+LA DAGL V+ G+ V+ Y TS P ++A GD A D V G+R + +A A
Sbjct: 247 ELAVDAGLRVSDGVEVDAYCTTSAPHVFAAGDVANRPDPVLGRRVRIEHWQNAQHQGTAA 306
Query: 302 AEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYPG 361
+ G F V ++ F L + G +RA R VV G+ G +Y
Sbjct: 307 GRAMLGIREPFDGV-PWFWSDQFGLNLQVAGF-PDRADRV---VVRGRLEGDRFAAFYLA 361
Query: 362 GKPITVKL 369
G + L
Sbjct: 362 GPTLVAAL 369
>gb|AAC03439.1| (AF006691) isopropylbenzene dioxygenase, ferredoxin reductase
subunit [Pseudomonas putida]
Length = 411
Score = 125 bits (311), Expect = 9e-28
Identities = 112/393 (28%), Positives = 183/393 (46%), Gaps = 32/393 (8%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYS-PCALPHVISGTIEKPEDVIVF 61
+V+IG+G AG+ A LR + +I ++G+E + Y P V++G + P +
Sbjct: 5 IVIIGAGLAGATAARSLRAQGYQGKIHMVGEEACVAYDRPSLSKDVLAGKLGDPP--FIM 62
Query: 62 PNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGE-VPYDKLVLATGSKAFIPPIKGVENE 120
+Y I + LGV ID + V+ + G + YD+L+LATG +A I G E
Sbjct: 63 DPFWYASADIDLHLGVRVTSIDVVSRQVLFESGHTLAYDRLLLATGVRARRMAIMGCELA 122
Query: 121 GVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLP 180
G+ TL+ D +++ +G K V++G GLIG E A K G V ++E + LL
Sbjct: 123 GIHTLRDNADSFALRQVLGPG--KSLVIVGGGLIGCEVATTARKAGTTVTILEAGDELLL 180
Query: 181 TMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGD-ETVEADLVLVATGVR 238
+L + + + +E GV+ S G V AV D V AD+VL++ G
Sbjct: 181 RVLGHKIGAWCRAELELMGVRIELNAQASHFEGKGHVRAVVCADGRRVAADVVLISIGAE 240
Query: 239 ANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMA 298
+LA+ AG+ RG++V+ +S P+++A+GD A G+R+L S ++ A
Sbjct: 241 PADELARAAGIACERGVLVDATGASSCPEVFAVGDVAAWPLRAGGRRSLETYMNSQMQ-A 299
Query: 299 KVAAEHIAGKDVKFRPVFNTAITELFDLE---IGTFGMTEERAKREGIDVVVGKFRGSTK 355
+ AA + G V P T+ TE+ IG FG E R +
Sbjct: 300 ETAAAAMLGTPVP-APQVPTSWTEIAGHRMQMIGDFGGPGEIVLRGDVQ----------- 347
Query: 356 PEYYPGGKPITVKLIFRKEEGRLIGAQIVGGER 388
G+P+ ++FR +GR+ A + +
Sbjct: 348 -----NGQPL---VLFRLLDGRIEAATAINAAK 372
>sp|P33009|TERA_PSESP TERPREDOXIN REDUCTASE >gi|285441|pir||D42971 terpredoxin reductase
(EC 1.18.1.-) - Pseudomonas sp >gi|151588|gb|AAA25997.1|
(M91440) terpredoxin reductase [Pseudomonas sp.]
Length = 409
Score = 124 bits (309), Expect = 2e-27
Identities = 87/314 (27%), Positives = 158/314 (49%), Gaps = 13/314 (4%)
Query: 4 VVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYS--PCALPHVISGTIEKPEDVIVF 61
V++G+G AG+ A FLR+ ++++ E Y P + ++++ + ++
Sbjct: 9 VIVGAGHAGTAAAFFLREFGYHGRVLLLSAETQHPYQRPPLSKEYLLA---QHSTPSLLK 65
Query: 62 PNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGEVPYDKLVLATGSKAFIPPIKGVENEG 121
+ Y + I++ L + I + V + +G YD L+LATGS G + +
Sbjct: 66 GKDSYARADIELCLQDDVLSITPASRQVKSSQGSYTYDHLILATGSHPRFMATLG-QADN 124
Query: 122 VFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPT 181
+ L DD RI++ +G+ + + VV+G G IGLE A + K+G V V+E LL
Sbjct: 125 LCYLSDWDDAGRIRQQLGEAS--RIVVLGGGFIGLEIASSACKMGKHVTVIERAPRLLSR 182
Query: 182 MLDKDMASIVQKNMEEHGVKFRFGVGVSEI----IGNPVEAVKIGD-ETVEADLVLVATG 236
++ + A+ + +G++ R G V E+ G V+AV + D + +E D++++ G
Sbjct: 183 VVSEAFATFIGDIHLGNGIELRLGEEVREVRRCTSGVRVDAVFLSDGQLLECDMLVIGVG 242
Query: 237 VRANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVR 296
++LA AGL G++V+E+ TSDP I AIGDC V + + + +A
Sbjct: 243 SEPRMELATAAGLACASGVLVDEHCHTSDPFISAIGDCVAVCPSPGHQLPRRESVQNATE 302
Query: 297 MAKVAAEHIAGKDV 310
A++ A ++G+ V
Sbjct: 303 QARLVAARLSGRPV 316
>emb|CAB99199.1| (AJ293587) alkylbenzene dioxygenase, ferredoxin reductase subunit
EbdAd [Pseudomonas putida]
Length = 411
Score = 123 bits (307), Expect = 3e-27
Identities = 110/393 (27%), Positives = 185/393 (46%), Gaps = 32/393 (8%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYS-PCALPHVISGTIEKPEDVIVF 61
+V+IG+G AG+ A LR +I ++G+E + Y P V++G + +P ++
Sbjct: 5 IVIIGAGLAGATAARSLRAQGYLGQIHMVGEEACVAYDRPSLSKDVLAGNLVEPP--LIM 62
Query: 62 PNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGE-VPYDKLVLATGSKAFIPPIKGVENE 120
+Y I + LGV ID + V+ + GE + YD+L+LATG +A I G E
Sbjct: 63 DPFWYVSADIDLHLGVRVTGIDVVSRQVLFESGETLAYDRLLLATGVRARRMAIMGCELA 122
Query: 121 GVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLP 180
G+ TL+ D +++ + K V++G GLIG E A K G +V ++E + LL
Sbjct: 123 GIHTLRDSADSFALRQVL--EPGKSLVIVGGGLIGCEVATTARKAGTKVTILEAGDELLL 180
Query: 181 TMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGD-ETVEADLVLVATGVR 238
+L + + + +E G++ S G V AV D + AD+VL++ G
Sbjct: 181 RVLGHKIGAWCRTELELMGIRVELNAQASHFEGQGHVRAVVCADGRRIAADVVLISIGAE 240
Query: 239 ANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMA 298
+LA+ AG+ RG++V+ +S P+++A+GD A G+R+L S ++ A
Sbjct: 241 PADELARAAGIACERGVLVDATGASSCPEVFAVGDVAAWPLRTGGQRSLETYINSQMQ-A 299
Query: 299 KVAAEHIAGKDVKFRPVFNTAITELFDLE---IGTFGMTEERAKREGIDVVVGKFRGSTK 355
+ AA + G V P T+ TE+ IG FG E R +
Sbjct: 300 ETAAAAMLGTPVP-APQVPTSWTEIAGHRMQMIGDFGGPGEIVLRGDVQ----------- 347
Query: 356 PEYYPGGKPITVKLIFRKEEGRLIGAQIVGGER 388
G+P+ ++FR +GR+ A + +
Sbjct: 348 -----NGQPL---VLFRLLDGRIEAATAINAAK 372
>dbj|BAA04112.2| (D16831) ferredoxin reductase [Pseudomonas sp. KKS102]
Length = 408
Score = 123 bits (306), Expect = 4e-27
Identities = 115/419 (27%), Positives = 185/419 (43%), Gaps = 38/419 (9%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYS--PCALPHVISGTIEKPEDVIV 60
VVV+G+G A +F LR+ + I V+G E Y P + + G EK
Sbjct: 10 VVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEK------ 63
Query: 61 FPNEFYEKQKIKMMLGVEAKKIDRE-RKVVITDKGEVPYDKLVLATGSKAFIPPIKGVEN 119
+ +++ +LGV A+ D + V ++D +PY LVLATG+ P
Sbjct: 64 IRLDCKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGAT 123
Query: 120 EGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLL 179
V TL++L+D RRI+ G R + +++G G+IGLE A G+ V +VE L+
Sbjct: 124 MPVHTLRTLEDARRIQA--GLRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLM 181
Query: 180 PTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKIGDET-VEADLVLVATGVR 238
+A V + GV RF V+ G+ V + D T + AD+V+V GV
Sbjct: 182 SRAAPATLADFVARYHAAQGVDLRFERSVT---GSVDGVVLLDDGTRIAADMVVVGIGVL 238
Query: 239 ANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMA 298
AN LA+ AGL + GI V+ Y +T+ PD+YA+GD + ++G+ + ++A
Sbjct: 239 ANDALARAAGLACDDGIFVDAYGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQG 298
Query: 299 KVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMT--EERAKREGIDVVVGKFRGSTKP 356
A H+ ++ L I G+ +E R + + KF
Sbjct: 299 IAVARHLVDPTAPGYAELPWYWSDQGALRIQVAGLASGDEEIVRGEVSLDAPKF------ 352
Query: 357 EYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYLETA 415
+ ++GR++GA V R + + L A +GAK + A + A
Sbjct: 353 ------------TLIELQKGRIVGATCVNNARDFAPLRRLLA---VGAKPDRAALADPA 396
>sp|P16640|CAMA_PSEPU PUTIDAREDOXIN REDUCTASE >gi|77767|pir||JX0078 putidaredoxin
reductase (EC 1.18.1.-) - Pseudomonas putida plasmid CAM
>gi|151112|gb|AAA25758.1| (J05406) putidaredoxin
reductase [Pseudomonas putida]
>gi|912426|dbj|BAA00413.1| (D00528) NADH-putidaredoxin
reductase [Pseudomonas putida]
Length = 422
Score = 122 bits (304), Expect = 6e-27
Identities = 96/316 (30%), Positives = 154/316 (48%), Gaps = 13/316 (4%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFP 62
VV++G+G AG A LR + I ++G + + L E + +
Sbjct: 7 VVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRT 66
Query: 63 NEFYEKQKIKMMLGVEAKKIDRERK-VVITDKGEVPYDKLVLATGSKAFIPPIK----GV 117
+ Y Q I+++ G + I+R+R+ V+++D + YD+LVLATG + P+ G
Sbjct: 67 PDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASGAVGK 126
Query: 118 ENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEH 177
N + L++L+D I+ + N + VVIG G IGLE A K M V +++
Sbjct: 127 ANNFRY-LRTLEDAECIRRQLIADN--RLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR 183
Query: 178 LLPTMLDKDMASIVQKNMEEHGVKFRFGVGVS----EIIGNPVEAVKIGDET-VEADLVL 232
+L + +++ + E GV R G V V AV D T + ADLV+
Sbjct: 184 VLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVI 243
Query: 233 VATGVRANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGT 292
G+ N +LA AGL+V+ GIV+NE++QTSDP I A+GDCA + + +
Sbjct: 244 AGIGLIPNCELASAAGLQVDNGIVINEHMQTSDPLIMAVGDCARFHSQLYDRWVRIESVP 303
Query: 293 SAVRMAKVAAEHIAGK 308
+A+ A+ A + GK
Sbjct: 304 NALEQARKIAAILCGK 319
>pir||T43160 nitrite reductase (EC 1.7.99.3) - yeast (Pichia angusta)
>gi|1418717|emb|CAA92206.1| (Z68122) nitrite reductase
[Pichia angusta]
Length = 1044
Score = 121 bits (301), Expect = 1e-26
Identities = 91/295 (30%), Positives = 147/295 (48%), Gaps = 24/295 (8%)
Query: 2 RVVVIGSGTAGSNFALFLRKLDRKAE---IIVIGKEPTMQYSPCALPHVISGTIEKPEDV 58
++V++G G G +F L D K I+V G+EP + Y+ L K ++
Sbjct: 20 KLVIVGLGMVGLSFLEKLLSNDSKLNEYSIMVYGEEPYLAYNRVGLTEYFQHREFK--NL 77
Query: 59 IVFPNEFYEKQKIKMMLGVEAK--KIDRERKVVITDKGE-VPYDKLVLATGSKAFIP--- 112
++ P EFY+ + K ++ K IDR +++ TDKG YD LVL TGS A +P
Sbjct: 78 LLSPEEFYQLRGEKWNYAIDEKVVDIDRRARIITTDKGNRASYDVLVLCTGSAAILPTDL 137
Query: 113 --PI--KGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGM- 167
P+ K G F +++DD+ + +Y +A+V+G GL+GLE A+A +
Sbjct: 138 LPPLTRKSYREMGCFVYRTIDDLYSMIDYCQGAKKTRAIVVGGGLLGLEAAKALYDMESF 197
Query: 168 -EVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEII---GNPVEAVKIGD 223
++ +V LL +D+ S++ ++E G+ R G VSE++ ++ VK +
Sbjct: 198 EDITIVHRSHWLLSQQMDQKGGSLLTSKVKELGITCRTGTTVSELLFDEDQNLKGVKYDN 257
Query: 224 ETV-EADLVLVATGVRANVDLAKDAGLEVNR--GIVVNEYLQTSDPDIYAIGDCA 275
+ E L+ G++ +L GL G VN LQTSD +IYAIG+CA
Sbjct: 258 GQIEECSLLCYTIGIKPRDELT-SCGLNAGSRGGFKVNNMLQTSDENIYAIGECA 311
>pir||T43155 nitrite reductase (EC 1.7.99.3) - yeast (Pichia angusta)
>gi|3849987|emb|CAA11230.1| (AJ223294) nitrite reductase
[Pichia angusta]
Length = 1044
Score = 121 bits (301), Expect = 1e-26
Identities = 91/295 (30%), Positives = 147/295 (48%), Gaps = 24/295 (8%)
Query: 2 RVVVIGSGTAGSNFALFLRKLDRKAE---IIVIGKEPTMQYSPCALPHVISGTIEKPEDV 58
++V++G G G +F L D K I+V G+EP + Y+ L K ++
Sbjct: 20 KLVIVGLGMVGLSFLEKLLSNDSKLNEYSIMVYGEEPYLAYNRVGLTEYFQHREFK--NL 77
Query: 59 IVFPNEFYEKQKIKMMLGVEAK--KIDRERKVVITDKGE-VPYDKLVLATGSKAFIP--- 112
++ P EFY+ + K ++ K IDR +++ TDKG YD LVL TGS A +P
Sbjct: 78 LLSPEEFYQLRGEKWNYAIDEKVVDIDRRARIITTDKGNRASYDVLVLCTGSAAILPTDL 137
Query: 113 --PI--KGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGM- 167
P+ K G F +++DD+ + +Y +A+V+G GL+GLE A+A +
Sbjct: 138 LPPLTRKSYREMGCFVYRTIDDLYSMIDYCQGAKKTRAIVVGGGLLGLEAAKALYDMESF 197
Query: 168 -EVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEII---GNPVEAVKIGD 223
++ +V LL +D+ S++ ++E G+ R G VSE++ ++ VK +
Sbjct: 198 EDITIVHRSHWLLSQQMDQKGGSLLTSKVKELGITCRTGTTVSELLFDEDQNLKGVKYDN 257
Query: 224 ETV-EADLVLVATGVRANVDLAKDAGLEVNR--GIVVNEYLQTSDPDIYAIGDCA 275
+ E L+ G++ +L GL G VN LQTSD +IYAIG+CA
Sbjct: 258 GQIEECSLLCYTIGIKPRDELT-SCGLNAGSRGGFKVNNMLQTSDENIYAIGECA 311
>emb|CAB61699.1| (AL133219) putative oxidoreductase. [Streptomyces coelicolor A3(2)]
Length = 407
Score = 120 bits (299), Expect = 2e-26
Identities = 103/337 (30%), Positives = 161/337 (47%), Gaps = 17/337 (5%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYS-PCALPHVISGTIEKPEDVIVF 61
+VV+G+G AG A+ LR+ + +IG EP Y P V+ GT E + F
Sbjct: 1 MVVVGAGMAGVQTAVALREQGFTGPVTLIGAEPHQPYDRPPLSKAVLLGTAEGSAFDVDF 60
Query: 62 PNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGEVPYDKLVLATGSKAF-IPPIKGVENE 120
E I + LG EA + V+ T +G VPYD LVLATG++ +P +GV
Sbjct: 61 -----EALGITLRLGCEALGVRPAEHVLDTSEGPVPYDVLVLATGAEPVRLPGAEGVP-- 113
Query: 121 GVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLP 180
GV L++LDD R++ + +++ VV+GAG IG E A A + G V VVE + L
Sbjct: 114 GVHLLRTLDDAERLRPVLARQHD--VVVVGAGWIGAEFATAAREAGCAVTVVEAADRPLA 171
Query: 181 TMLDKDMASIVQKNMEEHGVKFRFGVGVSEI-IGNPVEA--VKIGDET-VEADLVLVATG 236
L ++A+ + + G + R V + G P E+ V + D T + A V+V G
Sbjct: 172 DALPAEVAAPMTAWYADAGAELRTRARVERVESGGPGESGRVVLDDGTRLAAGAVVVGIG 231
Query: 237 VRANVDLAKDAGLEVNRG--IVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSA 294
R +G+ + ++ ++ L+TS PD++A+GDCA A G+R L +A
Sbjct: 232 ARPATGWLAGSGIALGAHGEVLADDLLRTSAPDVHAVGDCASFPSARYGERLLVHHWDNA 291
Query: 295 VRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTF 331
++ + A I G P + + + G F
Sbjct: 292 LQGPRTVAADIVGTPGGETPAAYDPVPYFWSEQFGRF 328
>sp|P08087|BNZD_PSEPU BENZENE 1,2-DIOXYGENASE SYSTEM FERREDOXIN--NAD(+) REDUCTASE
COMPONENT (P4 SUBUNIT) >gi|77732|pir||D29830 benzene
1,2-dioxygenase (EC 1.14.12.3) ferredoxin reductase
component - Pseudomonas putida >gi|151072|gb|AAA25738.1|
(M17904) protein 4 [Pseudomonas putida]
Length = 409
Score = 120 bits (297), Expect = 4e-26
Identities = 94/312 (30%), Positives = 157/312 (50%), Gaps = 10/312 (3%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYS-PCALPHVISGTIEKPEDVIVF 61
V +IG+G G A LR + I +IG EP + Y P V+ G++E+P I+
Sbjct: 5 VAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPP--ILA 62
Query: 62 PNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGE-VPYDKLVLATGSKAFIPPIKGVENE 120
++Y + +I M+ G E +D + + + D G + D +V+ATGS+A + G +
Sbjct: 63 EADWYGEARIDMLTGPEVTALDVQTRTISLDDGTTLSADAIVIATGSRARTMALPGSQLP 122
Query: 121 GVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLP 180
GV TL++ DV+ +++ + + +++G GLIG E A KLG+ V ++E + LL
Sbjct: 123 GVVTLRTYGDVQVLRD--SWTSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLV 180
Query: 181 TMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIG-NPVEAVKIGD-ETVEADLVLVATGVR 238
+L + + + ++ + E GV+ G GV G +E V D + AD L+ G
Sbjct: 181 RVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAE 240
Query: 239 ANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMA 298
LA+ AGL +RG++V+ T Y+ + V A G+R+L + +A R A
Sbjct: 241 PADQLARQAGLACDRGVIVDHCGATLAKG-YSPSEMWPVGAAAGGRRSL-ETYMNAQRQA 298
Query: 299 KVAAEHIAGKDV 310
A I GK+V
Sbjct: 299 AAVAAAILGKNV 310
>sp|Q04829|DLDH_HALVO DIHYDROLIPOAMIDE DEHYDROGENASE >gi|1076150|pir||A56824
dihydrolipoamide dehydrogenase (EC 1.8.1.4) - Haloferax
volcanii >gi|149020|gb|AAA72340.1| (L09733)
dihydrolipoamide dehydrogenase [Haloferax volcanii]
Length = 475
Score = 120 bits (297), Expect = 4e-26
Identities = 110/335 (32%), Positives = 166/335 (48%), Gaps = 49/335 (14%)
Query: 96 VPYDKLVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIG 155
+ ++ ++ATGS+ P +E V++ + + + P++ VV+G G IG
Sbjct: 140 IEFEHCIIATGSRVIQIPGFDFGDEPVWSSRDALEADTV--------PERLVVVGGGYIG 191
Query: 156 LEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVS------ 209
+E + FAKLG +V VVE+L+ +LP + D+A +V+K EE G+ G G +
Sbjct: 192 MELSTTFAKLGADVTVVEMLDDILPG-YESDVARVVRKRAEELGIDMHLGEGATGWREED 250
Query: 210 EIIGNPVEAVKIGDETVEADLVLVATG---VRANVDLAKDAGLEV-NRGIV-VNEYLQTS 264
+ I E + AD VLVA G V +D+ ++AGLE +RG + V++ +T
Sbjct: 251 DGIMVTTETEDGEENEYRADKVLVAVGRSPVTDTMDI-ENAGLEADDRGFLSVDDRRRTD 309
Query: 265 DPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELF 324
IYA+GD E L A + VAAEH+AG+ V F A
Sbjct: 310 VEHIYAVGDVVE---------DTPMLAHVASKEGIVAAEHVAGEPVAFDSQAVPAAV-FT 359
Query: 325 DLEIGTFGMTEERAKREGIDVVVGK--FRGSTKPEYYPGGKPIT-------VKLIFRKEE 375
D EIGT GMTE A+ G VVG+ FR S G+ +T V+++ +E
Sbjct: 360 DPEIGTVGMTEADAEEAGFTPVVGQMPFRAS--------GRALTTNHADGFVRVVADEES 411
Query: 376 GRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIA 410
G ++GAQIVG E I L+ +MGA +ED+A
Sbjct: 412 GFVLGAQIVGPE-ASELIAELAFAIEMGATLEDVA 445
>sp|P38681|NIR_NEUCR NITRITE REDUCTASE [NAD(P)H] >gi|542387|pir||A49848 nitrite
reductase (NADH) (EC 1.6.6.4) - Neurospora crassa
Length = 1176
Score = 119 bits (296), Expect = 5e-26
Identities = 125/447 (27%), Positives = 203/447 (44%), Gaps = 66/447 (14%)
Query: 2 RVVVIGSGTAGSNFALFLRKLD--RKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVI 59
R+VV+G G G F L KLD R+ EI+VIG+EP + Y+ L S + E +
Sbjct: 27 RIVVVGLGMVGIAFIEKLIKLDTQRQYEIVVIGEEPHVAYNRVGLTSFFSH--REVEQLY 84
Query: 60 VFPNEFYEKQ-----------KIKMMLGVEAKKIDRERKVVITDKGEVPYDKLVLATGSK 108
+ P E+Y++ + L K + +PYD L+LATGS
Sbjct: 85 LNPLEWYKQHLQTSSLTHHLSTAALSLSPATKSLTISPPPSTPSLTTLPYDHLILATGSS 144
Query: 109 AFIPP-IKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKA--VVIGAGLIGLEGAEAFAKL 165
A +P G + GVF +++ D++ + + K + VV+G GL+GLE A+A L
Sbjct: 145 ALLPTSTPGHDASGVFVYRNIADLQSLITWSSDTQIKGSTGVVVGGGLLGLEAAKALMDL 204
Query: 166 GM--EVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-------- 215
+ V+V+E +L +D + ++V + + GV+ V E+ +
Sbjct: 205 QVFGRVVVIERNGWVLSRQVDGEAGALVLEGVRGLGVEVLTRKRVKEVECDESKDEGEKE 264
Query: 216 ---VEAVKIGD-ETVEADLVLVATGVRANVDLAKDAGLEVNR----GIVVNEYLQTSDPD 267
V+ ++ D E + + A G++A +LA++AG+ GIVV++ LQTS PD
Sbjct: 265 KKRVKGIRFEDGEYLACSTICFAIGIKARDELAREAGITCAERGGGGIVVDDSLQTSAPD 324
Query: 268 IYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAA-----EHIAGKDVKFRPVFNTAITE 322
+YAIG+CA +T +G V MA V A H+ V RP +T + +
Sbjct: 325 VYAIGECAS-----WKGQTFGLIG-PGVEMADVLAFNFSQAHLHTPRVFKRPDLSTKL-K 377
Query: 323 LFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGGK-------------PITVKL 369
L +E+ +FG + A R+G + K R K GGK + K
Sbjct: 378 LLGVEVASFG--DFFADRDGPKELPPKLRRELKKS---GGKAEVKALTYKDPFLSVYKKY 432
Query: 370 IFRKEEGRLIGAQIVGGERVWGRIMTL 396
IF + L+G ++G + R++ L
Sbjct: 433 IFTSDGKYLLGGMMIGDTTDYVRLVPL 459
>sp|P37337|BPHG_BURCE BIPHENYL DIOXYGENASE SYSTEM FERREDOXIN--NAD(+) REDUCTASE COMPONENT
>gi|285279|pir||E42409 biphenyl dioxygenase (EC
1.14.-.-) ferredoxin reductase component - Pseudomonas
pseudoalcaligenes >gi|151095|gb|AAA25747.1| (M83673)
dioxygenase [Pseudomonas pseudoalcaligenes]
>gi|349604|gb|AAB63429.1| (M86348) biphenyl dioxygenase
[Burkholderia sp. LB400]
Length = 408
Score = 118 bits (294), Expect = 9e-26
Identities = 98/337 (29%), Positives = 164/337 (48%), Gaps = 10/337 (2%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPH-VISGTIEKPEDVIVF 61
+ +IG+G AGS A LR + I ++G E Y L V++G E+PE +
Sbjct: 5 IAIIGAGLAGSTAARALRAQGYEGRIHLLGDESHQAYDRTTLSKTVLAG--EQPEPPAIL 62
Query: 62 PNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGE-VPYDKLVLATGSKAFIPPIKGVENE 120
+ +Y + + LG +D + + + G + YD+L+LATG++A I+G +
Sbjct: 63 DSAWYASAHVDVQLGRRVSCLDLANRQIQFESGAPLAYDRLLLATGARARRMAIRGGDLA 122
Query: 121 GVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLP 180
G+ TL+ L D + +++ + + + V++G GLIG E A KL + V ++E + LL
Sbjct: 123 GIHTLRDLADSQALRQAL--QPGQSLVIVGGGLIGCEVATTARKLSVHVTILEAGDELLV 180
Query: 181 TMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGN-PVEAVKIGD-ETVEADLVLVATGVR 238
+L + + +E GV+ + G V AV D V AD+VLV+ G
Sbjct: 181 RVLGHRTGAWCRAELERMGVRVERNAQAARFEGQGQVRAVICADGRRVPADVVLVSIGAE 240
Query: 239 ANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMA 298
+LA+ AG+ RG++V+ TS P+++A GD A G+R+L S + A
Sbjct: 241 PADELARAAGIACARGVLVDATGATSCPEVFAAGDVAAWPLRQGGQRSLETYLNSQME-A 299
Query: 299 KVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTE 335
++AA + + V P T+ TE+ I G E
Sbjct: 300 EIAASAMLSQPVP-APQVPTSWTEIAGHRIQMIGDAE 335
>gb|AAB41508.1| (U29532) MopA [Burkholderia cepacia]
Length = 431
Score = 118 bits (294), Expect = 9e-26
Identities = 96/323 (29%), Positives = 157/323 (47%), Gaps = 16/323 (4%)
Query: 2 RVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVF 61
RVV++G+G A + A LR + EI+++G E Y L PE +
Sbjct: 12 RVVIVGAGQAAAAVAKTLRAEGHRGEIMMLGAERVGPYERPPLSKAWLSAENVPEIAALL 71
Query: 62 PNEFYEKQKIKMMLGVEAKKIDRERKVVITDKG-EVPYDKLVLATGSKAFIPPIKGVENE 120
+ + + GV +IDR V D G E+ +D+LV+ATG +A + G ++
Sbjct: 72 EKSEAGQSDVDLRTGVNVTRIDRPSCTVHVDDGSEICFDRLVIATGGRARRLAVPGDASD 131
Query: 121 GVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVE----LLE 176
+ L+++DD I+ G + K+ ++IG G IGLE A + KLG++V++VE L E
Sbjct: 132 QIAYLRTIDDALHIRR--GLKAGKRLLLIGGGWIGLETACSARKLGVDVVLVEAAQRLCE 189
Query: 177 HLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVE--AVKIGDETVEADLVLVA 234
+P ++ + + I Q+++ GV R G G+ ++ P A + E DLV+
Sbjct: 190 RTVPAIVGERLLGI-QRSL---GVDVRLGAGIEQLSKLPGGRYAASLSGVREEFDLVVAG 245
Query: 235 TGVRANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCA--EVIDAVTGKRTLSQLGT 292
G+ AN +LA +AGL G++ + +T DP ++A GD A E G R L +
Sbjct: 246 VGMVANDELAAEAGLPCAGGVLCDVEGRTVDPHVFACGDVASFEHPSGPIGMRRL-ESWD 304
Query: 293 SAVRMAKVAAEHIAGKDVKFRPV 315
+A + A I GK P+
Sbjct: 305 NAQQQGAACARAILGKRAAAHPL 327
>gb|AAC38619.1| (AF060489) initial dioxygenase reductase subunit [Sphingomonas sp.
CB3]
Length = 409
Score = 118 bits (294), Expect = 9e-26
Identities = 86/276 (31%), Positives = 142/276 (51%), Gaps = 8/276 (2%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFP 62
V ++G+ AG A LR + EI +IG E + Y A+ I T P + P
Sbjct: 5 VAIVGASAAGVAAATTLRDEGYEGEITLIGGETDLPYERPAVSKDILLTGAAPP---IIP 61
Query: 63 NEFYEKQKIKMMLGVEAKKID-RERKVVITDKGEVPYDKLVLATGSKAFIPPIKGVENEG 121
+ Y + IK++LG A++ID R ++ ++D + D+L+LATG P+ G E G
Sbjct: 62 EQRYAELNIKLLLGTRAERIDARYGQIELSDGRTMVSDRLLLATGGWPRRLPVPGAELGG 121
Query: 122 VFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPT 181
+ ++ D + I+ G R + V+G GLIG E A + + G EV +E L
Sbjct: 122 LHYVRDARDGQAIRS--GLRPGARIAVVGGGLIGAEVAASAVQAGCEVDWIEAEGLCLAR 179
Query: 182 MLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGN-PVEAVKIGD-ETVEADLVLVATGVRA 239
L + +A + + GV+ V +IG V+AV++ D ++AD+V+V G+
Sbjct: 180 ALSRPLAEAMMDVHRQRGVRVHANALVVRLIGERSVQAVELADGRRIDADMVVVGIGITP 239
Query: 240 NVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCA 275
+LA++A L V+ GIV++ + +TS ++YA GD A
Sbjct: 240 AAELAEEADLTVSDGIVIDPFCRTSAENVYAAGDVA 275
>pir||JW0101 azaarene carbazole catabolism related protein carAd - Sphingomonas
sp
Length = 409
Score = 118 bits (294), Expect = 9e-26
Identities = 86/276 (31%), Positives = 142/276 (51%), Gaps = 8/276 (2%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFP 62
V ++G+ AG A LR + EI +IG E + Y A+ I T P + P
Sbjct: 5 VAIVGASAAGVAAATTLRDEGYEGEITLIGGETDLPYERPAVSKDILLTGAAPP---IIP 61
Query: 63 NEFYEKQKIKMMLGVEAKKID-RERKVVITDKGEVPYDKLVLATGSKAFIPPIKGVENEG 121
+ Y + IK++LG A++ID R ++ ++D + D+L+LATG P+ G E G
Sbjct: 62 EQRYAELNIKLLLGTRAERIDARYGQIELSDGRTMVSDRLLLATGGWPRRLPVPGAELGG 121
Query: 122 VFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPT 181
+ ++ D + I+ G R + V+G GLIG E A + + G EV +E L
Sbjct: 122 LHYVRDARDGQAIRS--GLRPGARIAVVGGGLIGAEVAASAVQAGCEVDWIEAEGLCLAR 179
Query: 182 MLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGN-PVEAVKIGD-ETVEADLVLVATGVRA 239
L + +A + + GV+ V +IG V+AV++ D ++AD+V+V G+
Sbjct: 180 ALSRPLAEAMMDVHRQRGVRVHANALVVRLIGERSVQAVELADGRRIDADMVVVGIGITP 239
Query: 240 NVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCA 275
+LA++A L V+ GIV++ + +TS ++YA GD A
Sbjct: 240 AAELAEEADLTVSDGIVIDPFCRTSAENVYAAGDVA 275
>pir||F41858 biphenyl dioxygenase (EC 1.14.-.-) ferredoxin reductase component -
Pseudomonas sp
Length = 408
Score = 118 bits (293), Expect = 1e-25
Identities = 98/337 (29%), Positives = 163/337 (48%), Gaps = 10/337 (2%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPH-VISGTIEKPEDVIVF 61
+ +IG+G AGS A LR + I ++G E Y L V++G E+PE +
Sbjct: 5 IAIIGAGLAGSTAARALRAQGYEGRIHLLGDESHQAYDRTTLSKTVLAG--EQPEPPAIL 62
Query: 62 PNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGE-VPYDKLVLATGSKAFIPPIKGVENE 120
+ +Y + + LG +D + + + G + YD+L+LATG++A I+G +
Sbjct: 63 DSAWYASAHVDVQLGRRVSCLDLANRQIQFESGAPLAYDRLLLATGARARRMAIRGGDLA 122
Query: 121 GVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLP 180
G+ TL+ L D + +++ + + + V++G GLIG E A KL + V ++E + LL
Sbjct: 123 GIHTLRDLADSQALRQAL--QPGQSLVIVGGGLIGCEVATTARKLSVHVTILEAGDELLV 180
Query: 181 TMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGN-PVEAVKIGD-ETVEADLVLVATGVR 238
+L + + +E GV+ + G V AV D V AD+VLV+ G
Sbjct: 181 RVLGHRTGAWCRAELERMGVRVERNAQAARFEGQGQVRAVICADGRRVPADVVLVSIGAE 240
Query: 239 ANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMA 298
+LA+ AG+ RG++V+ TS P+++A GD A G+R+L S + A
Sbjct: 241 PADELARAAGIACARGVLVDATGATSCPEVFAAGDVAAWPLRQGGQRSLETYLNSQME-A 299
Query: 299 KVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTE 335
++AA + + V P T TE+ I G E
Sbjct: 300 EIAASAMLSQPVP-APQVPTCWTEIAGHRIQMIGDAE 335
>sp|P57303|DLDH_BUCAI DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONENT OF PYRUVATE AND
2-OXOGLUTARATE DEHYDROGENASES COMPLEXES)
>gi|10038889|dbj|BAB12924.1| (AP001118) dihydrolipoamide
dehydrogenase [Buchnera sp. APS]
Length = 473
Score = 118 bits (293), Expect = 1e-25
Identities = 119/376 (31%), Positives = 186/376 (48%), Gaps = 47/376 (12%)
Query: 67 EKQKIKMMLGVEAKKIDRERKVVIT-DKGEVPYDKLVLATGSKAFIPPIKGVENEGVFTL 125
+K+KI++ G + D+ V T DK + +D ++ATGSK I + ++ +
Sbjct: 106 KKRKIRIFQGHAIFETDKSLCVTNTEDKFTIFFDNAIIATGSKPI--KIPSIPHDDIRIW 163
Query: 126 KSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDK 185
S D + K+ P ++IG+G+IGLE A ++ LG +V +++ H LP ++D+
Sbjct: 164 DSTDALSL------KKIPNNFLIIGSGIIGLEMATIYSALGSKVDIIDRFNHFLP-VIDE 216
Query: 186 DMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVK-----------IGDETVEADLVLVA 234
D++SI +K++ + +F + ++ I + VE K I + + D VLVA
Sbjct: 217 DISSIYKKSINQ-----QFNLMLNTHI-DKVEVKKDALIVDMIHENIPKKNILYDAVLVA 270
Query: 235 TGVRANVD-LAKD-AGLEVNR--GIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQL 290
G N+D L D GL++N I VN L+T+ P IYAIGD V G L+
Sbjct: 271 IGRTPNIDSLGLDRIGLKINNFGFIQVNNQLKTNIPHIYAIGD-------VAGTPMLAHK 323
Query: 291 GTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKF 350
G V +AAE I+GK+ F P +I D EI G++E+ AK+E I+ V F
Sbjct: 324 G---VHEGHIAAEVISGKNHYFEPKVIPSIA-YTDPEIAWVGLSEKEAKQENINYEVAIF 379
Query: 351 RGSTKPEYYPGGKPI-TVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALA-QMGAKVED 408
+ I KLIF K+ ++IG IVG G ++ LA +MG ED
Sbjct: 380 PWNASGRAIASNCSIGKTKLIFNKQNNKIIGGSIVGSNA--GELIGEVGLAIEMGCDAED 437
Query: 409 IAYLETAYAPPISPTI 424
IA A+ P +S +I
Sbjct: 438 IALTIHAH-PTLSESI 452
>sp|P21880|DLD1_BACSU DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONENT OF PYRUVATE COMPLEX)
(S COMPLEX, 50 KD SUBUNIT) >gi|98440|pir||E36718
dihydrolipoamide dehydrogenase (EC 1.8.1.4) - Bacillus
subtilis >gi|143380|gb|AAA62684.1| (M57435)
dihydrolipoamide dehydrogenase E3 subunit [Bacillus
subtilis] >gi|2633832|emb|CAB13334.1| (Z99111)
dihydrolipoamide dehydrogenase E3 subunit of both
pyruvate dehydrogenase and 2-oxoglutarate dehydrogenase
complexes [Bacillus subtilis] >gi|3282145|gb|AAC24935.1|
(AF012285) dihydrolipoamide dehydrogenase E3 [Bacillus
subtilis]
Length = 470
Score = 118 bits (292), Expect = 2e-25
Identities = 114/361 (31%), Positives = 175/361 (47%), Gaps = 61/361 (16%)
Query: 98 YDKLVLATGSKAF-IPPIKGVE----NEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAG 152
+ ++ATGS+ +P K E + G LK + PKK VVIG G
Sbjct: 140 FKNAIIATGSRPIELPNFKYSERVLNSTGALALKEI--------------PKKLVVIGGG 185
Query: 153 LIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHG-VKFRFGVGVSEI 211
IG E A+A G E++++E + +LP +K M+S+V + +++ G V+ +
Sbjct: 186 YIGTELGTAYANFGTELVILEGGDEILPG-FEKQMSSLVTRRLKKKGNVEIHTNAMAKGV 244
Query: 212 IGNP-----VEAVKIGDETVEADLVLVATGVRANVDL--AKDAGLEV-NRGIV-VNEYLQ 262
P VK ++TV+AD VL+ G R N D + G+E+ +RGIV ++ +
Sbjct: 245 EERPDGVTVTFEVKGEEKTVDADYVLITVGRRPNTDELGLEQVGIEMTDRGIVKTDKQCR 304
Query: 263 TSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITE 322
T+ P+IYAIGD E L A K+AAE IAG+ + + A+
Sbjct: 305 TNVPNIYAIGDIIEG----------PPLAHKASYEGKIAAEAIAGEPAEIDYLGIPAVV- 353
Query: 323 LFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGGKPIT-------VKLIFRKEE 375
+ E+ + G TE +AK EG+D+V KF + G+ ++ +KLI RKE+
Sbjct: 354 FSEPELASVGYTEAQAKEEGLDIVAAKF------PFAANGRALSLNETDGFMKLITRKED 407
Query: 376 GRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYLETAYAPPISPTIDPITV-AADMA 434
G +IGAQI G I LS + G EDIA A+ PT+ IT+ AA++A
Sbjct: 408 GLVIGAQIAGAS-ASDMISELSLAIEGGMTAEDIAMTIHAH-----PTLGEITMEAAEVA 461
Query: 435 L 435
+
Sbjct: 462 I 462
>gb|AAD22551.1|AF112870_3 (AF112870) nitrate reductase [Pseudomonas aeruginosa]
Length = 221
Score = 117 bits (290), Expect = 3e-25
Identities = 75/216 (34%), Positives = 118/216 (53%), Gaps = 5/216 (2%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKA-EIIVIGKEPTMQYSPCALPHVISGTIEKPEDVI 59
+++V++G+G AG L KL+ +I V G EP Y+ L V++G + E+++
Sbjct: 4 IKLVMVGNGMAGVRTLEELLKLNSDFYDITVFGAEPHPNYNRILLSPVLAGE-QTFEEIV 62
Query: 60 VFPNEFYEKQKIKMMLGVEAKKIDR-ERKVVITDKGEVPYDKLVLATGSKAFIPPIKGVE 118
+ +Y + IK++L + +IDR R+VV D E YD+L+LATGS FI PI G
Sbjct: 63 LNDLNWYAENGIKLLLDRKVVQIDRLRRRVVAADGSEAEYDRLLLATGSLPFILPIPGNR 122
Query: 119 NEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHL 178
+GV + + D + + + R AVVIG GL+GLE A + GM+V VV L + L
Sbjct: 123 LQGVIGYRDIADTQAMIDCA--RTHSHAVVIGGGLLGLEAANGLKQRGMDVTVVHLSDWL 180
Query: 179 LPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGN 214
L LD+ ++Q +E G++FR E++ N
Sbjct: 181 LERQLDRTAGKLLQGALEARGIRFRLNTQTQELMDN 216
>dbj|BAB06371.1| (AP001516) pyruvate dehydrogenase E3 (dihydrolipoamide
dehydrogenase) [Bacillus halodurans]
Length = 469
Score = 116 bits (288), Expect = 5e-25
Identities = 106/313 (33%), Positives = 154/313 (48%), Gaps = 47/313 (15%)
Query: 143 PKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKF 202
PKK VVIG G IG+E A++ LG +V+V+E + +LP +K MA +V++ ++++GV F
Sbjct: 176 PKKLVVIGGGYIGIELTGAYSNLGSDVVVLEGGKQILPG-FEKQMAKLVERKLKKNGVSF 234
Query: 203 RF-----GVGVSEIIGNPVEAVKIGDETVEADLVLVATGVRANVDLAKDAGLE------V 251
GV +E +K +E EAD VLV G + N D + GLE
Sbjct: 235 HTEAMAKGVEETEDGVKVTAEIKGKEEVFEADYVLVTVGRKPNTD---ELGLEQIGVELT 291
Query: 252 NRGIV-VNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDV 310
RG++ V++ +T+ +IYAIGD E L A K+AAE IAG+
Sbjct: 292 ERGLIKVDKQCRTNLSNIYAIGDVIEG----------PALAHKASYEGKIAAEAIAGEKS 341
Query: 311 KFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGGKPIT---- 366
+ + A+ D E+ T G TE AK G DV KF + G+ ++
Sbjct: 342 EIDYLAIPAVV-FSDPELATVGYTETEAKEAGYDVTAAKF------PFAANGRALSLNDA 394
Query: 367 ---VKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYLETAYAPPISPT 423
+KLI RKE+G +IGAQI G I L + G EDIA A+ P+
Sbjct: 395 DGFMKLITRKEDGLVIGAQI-AGPNASDMIAELGLAIETGMTAEDIALTIHAH-----PS 448
Query: 424 IDPITV-AADMAL 435
+ IT+ AA++AL
Sbjct: 449 LGEITMEAAEVAL 461
>emb|CAB93969.1| (AJ251217) ferredoxin reductase [Pseudomonas sp. B4]
Length = 408
Score = 116 bits (287), Expect = 6e-25
Identities = 97/337 (28%), Positives = 163/337 (47%), Gaps = 10/337 (2%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPH-VISGTIEKPEDVIVF 61
+ +IG+G AGS A LR + I ++G E Y L V++G E+PE +
Sbjct: 5 IAIIGAGLAGSTAARALRAQGYEGRIHLLGDESHQAYDRTTLSKTVLAG--EQPEPPAIL 62
Query: 62 PNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGE-VPYDKLVLATGSKAFIPPIKGVENE 120
+ +Y + + LG +D + + + G + YD+L+LATG++A I+G +
Sbjct: 63 DSAWYASAHVDVQLGRRVSCLDLANRQIQFESGAPLAYDRLLLATGARARRMAIRGGDLA 122
Query: 121 GVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLP 180
G+ TL+ L D + +++ + + + V++G GLIG E A KL + V ++E + LL
Sbjct: 123 GIHTLRDLADSQALRQAL--QPGQSLVIVGGGLIGCEVATTARKLSVHVTILEAGDELLV 180
Query: 181 TMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGN-PVEAVKIGD-ETVEADLVLVATGVR 238
+L + + +E GV+ + G V AV D AD+VLV+ G
Sbjct: 181 RVLGHRTGAWCRAELERMGVRVERNAQAARFEGQGQVRAVICADGRRGPADVVLVSIGAE 240
Query: 239 ANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMA 298
+LA+ AG+ RG++V+ TS P+++A GD A G+R+L S + A
Sbjct: 241 PADELARAAGIACARGVLVDATGATSCPEVFAAGDVAAWPLRQGGQRSLETYLNSQME-A 299
Query: 299 KVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTE 335
++AA + + V P T+ TE+ I G E
Sbjct: 300 EIAASAMLSQPVP-APQVPTSWTEIAGHRIQMIGDAE 335
>sp|P77650|HCAD_ECOLI 3-PHENYLPROPIONATE DIOXYGENASE FERREDOXIN--NAD(+) REDUCTASE
COMPONENT (DIGOXIGENIN SYSTEM FERREDOXIN--NAD(+)
REDUCTASE COMPONENT) >gi|7433254|pir||E65031
hypothetical protein b2542 - Escherichia coli (strain
K-12) >gi|1788892|gb|AAC75595.1| (AE000340) ferredoxin
reductase subunit of phenylpropionate dioxygenase
[Escherichia coli K12] >gi|1799960|dbj|BAA16445.1|
(D90884) BIPHENYL DIOXYGENASE SYSTEM FERREDOXIN--NAD(+)
REDUCTASE COMPONENT (EC 1.18.1.3). [Escherichia coli]
>gi|1799968|dbj|BAA16452.1| (D90885) BIPHENYL
DIOXYGENASE SYSTEM FERREDOXIN--NAD(+) REDUCTASE
COMPONENT (EC 1.18.1.3). [Escherichia coli]
>gi|2072113|emb|CAA71952.1| (Y11070) ferredoxin
reductase [Escherichia coli]
Length = 400
Score = 115 bits (286), Expect = 8e-25
Identities = 84/316 (26%), Positives = 156/316 (48%), Gaps = 10/316 (3%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYS--PCALPHVISGTIEKPEDVIV 60
++++G G A + A LR+ E+ + E + Y P + ++ + P+ V
Sbjct: 6 IIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLE---DSPQLQQV 62
Query: 61 FPNEFYEKQKIKMMLGVEAKKIDRE-RKVVITDKGEVPYDKLVLATGSKAFIPPIKGVEN 119
P ++++ + + GV K + R+ R++V+T+ +D+L +ATG+ A P+
Sbjct: 63 LPANWWQENNVHLHSGVTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALG 122
Query: 120 EGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLL 179
E FTL+ D R++E + + + V+IGAG IGLE A + + +V V+EL ++
Sbjct: 123 ERCFTLRHAGDAARLREVL--QPERSVVIIGAGTIGLELAASATQRRCKVTVIELAATVM 180
Query: 180 PTMLDKDMASIVQKNMEEHGVKFRFGVGVSEII-GNPVEAVKIGDETVEADLVLVATGVR 238
+ + + ++ GV+ + ++ G VE ET++AD+V+ G+
Sbjct: 181 GRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEKVELTLQSGETLQADVVIYGIGIS 240
Query: 239 ANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMA 298
AN LA++A L+ GIV++E +T DP I+A GD A + G + +A A
Sbjct: 241 ANEQLAREANLDTANGIVIDEACRTCDPAIFAGGDVA-ITRLDNGALHRCESWENANNQA 299
Query: 299 KVAAEHIAGKDVKFRP 314
++AA + G + P
Sbjct: 300 QIAAAAMLGLPLPLLP 315
>emb|CAC12462.1| (AL445067) mercuric reductase related protein [Thermoplasma
acidophilum]
Length = 469
Score = 115 bits (284), Expect = 1e-24
Identities = 113/364 (31%), Positives = 177/364 (48%), Gaps = 39/364 (10%)
Query: 85 ERKVVITDKGEVPYDKLVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKEYIGKRNPK 144
+R+V + D E+ +++ATGS+ IP + G+ N G T + RI P+
Sbjct: 123 DRRVKLDDGQELFGYNVLIATGSRPSIPAVPGLANAGYITSNEFWALERI--------PE 174
Query: 145 KAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRF 204
V+IG+G IG E +A A+LG V +VE+ + +LP + KDMA +V M GV+F
Sbjct: 175 SLVIIGSGPIGSEIGQAAARLGSRVHIVEIADQILPG-ISKDMAQMVMDAMASDGVEFSL 233
Query: 205 GVGVSEI-IGNPVEAVKIG----DETVEADLVLVATGVRANVDL-AKDAGLEVNR-GIVV 257
V ++ + N + V+ +EAD +LVATG N DL + G++ +R GI V
Sbjct: 234 SSMVKDVSVRNGKKIVRFEKNGVQHEIEADEILVATGRSPNADLDLEKTGVKYDRYGIEV 293
Query: 258 NEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHI---AGKDVKFRP 314
+ L+TS+ IYA GD K+ L +L T A + +AAE++ AG V
Sbjct: 294 DSTLRTSNRKIYAAGDVV--------KQRL-KLETLASKEGVIAAENMFDHAGISVDLN- 343
Query: 315 VFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKP-EYYPGGKPITVKLIFRK 373
+ + E + G TE+ A + G++ V + P E +K++ +
Sbjct: 344 --SFPVAVFTSPEYASVGYTEDEALKAGLNYDVRSIYTTDVPKERILRNDRGMIKIVAEQ 401
Query: 374 EEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYLETAYAPPISPTI-DPITVAAD 432
GR+IG QIV E I SA+ G V D+ ++T P + PT+ + I +AA
Sbjct: 402 GTGRIIGIQIV-AENAADMINEASAILHAGMTVGDV--IDT---PHVFPTVNEGIKLAAQ 455
Query: 433 MALR 436
LR
Sbjct: 456 SFLR 459
>gb|AAG20022.1| (AE005082) NADH oxidase; NoxA [Halobacterium sp. NRC-1]
Length = 417
Score = 113 bits (280), Expect = 4e-24
Identities = 95/340 (27%), Positives = 163/340 (47%), Gaps = 15/340 (4%)
Query: 4 VVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVFPN 63
V+IG G AGS+ A + + A+I V+ E Y+ + G + + I P
Sbjct: 6 VIIGDGIAGSSAAEAIHEEAPDADITVLTDEGETLYNRILIKEYAKGKLPEAPISIHDP- 64
Query: 64 EFYEKQKIKMMLGVEAKKIDRERKVVITDKG-EVPYDKLVLATGSKAFIPPIKGVENEGV 122
E+Y+++ I + L +I+ + V T +G E+ YDKL++A G P++ + +GV
Sbjct: 65 EWYDERDIDIQLNTLVTRINPDAHTVETHEGTEIEYDKLLVAAGGTPNDLPVENADADGV 124
Query: 123 FTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTM 182
+ +D RRI+E+ + VV+GAGL+G++ A ++ +
Sbjct: 125 HHFWTFEDARRIREHAEAADT--GVVVGAGLLGIDLAAICGGQDVDAKYLMRGNRWWRYA 182
Query: 183 LDKDMASIVQKNMEEHGVK--FRFGVGVSEIIGNPVEAVKIGDETV--EADLVLVATGVR 238
L + A I+ + + E GV+ F GV E+ + A + V +AD VA G+
Sbjct: 183 LSEAGAEIIHEGLREKGVEPVFESGVDHFEVDDDGALAAAVDGNGVRHDADFAGVAIGLD 242
Query: 239 ANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMA 298
NV++ +D + G+ V+EY++T DIYA GD + D + +R + SA +
Sbjct: 243 FNVEILQDTDATIENGVHVDEYMRTEVDDIYAAGDITQYWDTILDERAQNGSWGSAKQQG 302
Query: 299 KVAAEHI---AGKDVK---FRPVFNTAITELFDLEIGTFG 332
+A + +G DV+ FR V + +IT FD +FG
Sbjct: 303 ALAGRTMLADSGHDVEIEPFRWVSSYSITH-FDFPFLSFG 341
>sp|P11959|DLD1_BACST DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONENT OF PYRUVATE COMPLEX)
>gi|98197|pir||S13839 dihydrolipoamide dehydrogenase (EC
1.8.1.4) [validated] - Bacillus stearothermophilus
>gi|40044|emb|CAA37631.1| (X53560) dihydrolipoamide
dehydrogenase [Bacillus stearothermophilus]
Length = 470
Score = 113 bits (279), Expect = 5e-24
Identities = 124/389 (31%), Positives = 186/389 (46%), Gaps = 61/389 (15%)
Query: 70 KIKMMLGVEAKKIDRER-KVVITDKGEV-PYDKLVLATGSKAF-IPPIKGVENEGVFTLK 126
K++++ G EA +D +VV D + + ++ATGS+ +P K F+ +
Sbjct: 111 KVEIVKG-EAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFK-------FSNR 162
Query: 127 SLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKD 186
LD + +G+ PK VVIG G IG+E A+A G +V ++E +L + +K
Sbjct: 163 ILDSTGALN--LGEV-PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL-SGFEKQ 218
Query: 187 MASIVQKNMEEHGVKF---RFGVGVSEIIGNPVEAVKIGDE--TVEADLVLVATGVRANV 241
MA+I++K +++ GV+ G E + E T++AD VLV G R N
Sbjct: 219 MAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNT 278
Query: 242 DLAKDAGLE------VNRGIV-VNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSA 294
D + GLE NRG++ V++ +TS P+I+AIG D V G L A
Sbjct: 279 D---ELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIG------DIVPG----PALAHKA 325
Query: 295 VRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGST 354
KVAAE IAG V A+ D E + G E++AK EGIDV+ KF
Sbjct: 326 SYEGKVAAEAIAGHPSAVDYVAIPAVV-FSDPECASVGYFEQQAKDEGIDVIAAKF---- 380
Query: 355 KPEYYPGGKPIT-------VKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVE 407
+ G+ + +KL+ RKE+G +IGAQI+ G I L + G E
Sbjct: 381 --PFAANGRALALNDTDGFLKLVVRKEDGVIIGAQII-GPNASDMIAELGLAIEAGMTAE 437
Query: 408 DIAYLETAYAPPISPTIDPITV-AADMAL 435
DIA A+ PT+ I + AA++AL
Sbjct: 438 DIALTIHAH-----PTLGEIAMEAAEVAL 461
>pdb|1EBD|A Chain A, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
>gi|1633235|pdb|1EBD|B Chain B, Dihydrolipoamide
Dehydrogenase Complexed With The Binding Domain Of The
Dihydrolipoamide Acetylase
Length = 455
Score = 113 bits (279), Expect = 5e-24
Identities = 124/389 (31%), Positives = 186/389 (46%), Gaps = 61/389 (15%)
Query: 70 KIKMMLGVEAKKIDRER-KVVITDKGEV-PYDKLVLATGSKAF-IPPIKGVENEGVFTLK 126
K++++ G EA +D +VV D + + ++ATGS+ +P K F+ +
Sbjct: 105 KVEIVKG-EAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFK-------FSNR 156
Query: 127 SLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKD 186
LD + +G+ PK VVIG G IG+E A+A G +V ++E +L + +K
Sbjct: 157 ILDSTGALN--LGEV-PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL-SGFEKQ 212
Query: 187 MASIVQKNMEEHGVKF---RFGVGVSEIIGNPVEAVKIGDE--TVEADLVLVATGVRANV 241
MA+I++K +++ GV+ G E + E T++AD VLV G R N
Sbjct: 213 MAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNT 272
Query: 242 DLAKDAGLE------VNRGIV-VNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSA 294
D + GLE NRG++ V++ +TS P+I+AIG D V G L A
Sbjct: 273 D---ELGLEQIGIKMTNRGLIEVDQQCRTSVPNIFAIG------DIVPG----PALAHKA 319
Query: 295 VRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGST 354
KVAAE IAG V A+ D E + G E++AK EGIDV+ KF
Sbjct: 320 SYEGKVAAEAIAGHPSAVDYVAIPAVV-FSDPECASVGYFEQQAKDEGIDVIAAKF---- 374
Query: 355 KPEYYPGGKPIT-------VKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVE 407
+ G+ + +KL+ RKE+G +IGAQI+ G I L + G E
Sbjct: 375 --PFAANGRALALNDTDGFLKLVVRKEDGVIIGAQII-GPNASDMIAELGLAIEAGMTAE 431
Query: 408 DIAYLETAYAPPISPTIDPITV-AADMAL 435
DIA A+ PT+ I + AA++AL
Sbjct: 432 DIALTIHAH-----PTLGEIAMEAAEVAL 455
>gb|AAB36670.1| (U53507) isopropylbenzene-2,3-dioxygenase [Pseudomonas sp. JR1]
Length = 411
Score = 112 bits (277), Expect = 9e-24
Identities = 84/277 (30%), Positives = 139/277 (49%), Gaps = 8/277 (2%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHV-ISGTIEKPEDVIVF 61
+V+IG+G AG+ +LR + +I ++G+E + Y +L V +SG + +P ++
Sbjct: 5 IVIIGAGLAGATATRYLRAQGYQGKIHLVGEELHVAYDRPSLSKVALSGKVVEPPAIL-- 62
Query: 62 PNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGEV-PYDKLVLATGSKAFIPPIKGVENE 120
+Y I + LGV ID V+ + G++ YD+L+LATG++A I G E
Sbjct: 63 DPCWYASADIDLHLGVRVTGIDVVNHQVLFESGDILAYDRLLLATGARARRMAITGSELA 122
Query: 121 GVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLP 180
G+ TL+ D + +++ + + V++G GLIG E A G V V+E + LL
Sbjct: 123 GIHTLRDRADSQALRQAL--EPGQSLVIVGGGLIGCEVATTAINAGAHVTVLEAGDELLL 180
Query: 181 TMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGD-ETVEADLVLVATGVR 238
+L + + + +E GV+ + G V AV D + A VLV+ GV
Sbjct: 181 RVLGRSTGAWCRNELERLGVRVELNAQAAHFEGEGHVHAVVCADGRRIAAGTVLVSIGVE 240
Query: 239 ANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCA 275
+LA+ AG RG+VV+ +S P ++A GD A
Sbjct: 241 PADELARAAGFACERGVVVDATGASSCPAVFAAGDVA 277
>dbj|BAA07078.1| (D37828) ferredoxin reductase of cumene dioxygenase [Pseudomonas
fluorescens] >gi|4105713|gb|AAD12767.1| (AF049851)
ferredoxin reductase [Pseudomonas fluorescens]
Length = 411
Score = 111 bits (274), Expect = 2e-23
Identities = 82/277 (29%), Positives = 137/277 (48%), Gaps = 8/277 (2%)
Query: 3 VVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYS-PCALPHVISGTIEKPEDVIVF 61
+V+IG+G AG+ +LR + +I ++G+E + Y P +SG + +P ++
Sbjct: 5 IVIIGAGLAGATATRYLRAQGYQGKIHLVGEELHVAYDRPSLSKDTLSGKVVEPPAIL-- 62
Query: 62 PNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGEV-PYDKLVLATGSKAFIPPIKGVENE 120
+Y I + LGV ID V+ + G++ YD+L+LATG++A I G E
Sbjct: 63 DPCWYASADIDLHLGVRVTGIDVVNHQVLFESGDILAYDRLLLATGARARRMAITGSELA 122
Query: 121 GVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLP 180
G+ TL+ D + +++ + + V++G GLIG E A G V V+E + LL
Sbjct: 123 GIHTLRDRADSQALRQAL--EPGQSLVIVGGGLIGCEVATTAINAGAHVTVLEAGDELLL 180
Query: 181 TMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP-VEAVKIGD-ETVEADLVLVATGVR 238
+L + + + +E GV+ + G V AV D + A VLV+ G
Sbjct: 181 RVLGRSTGAWCRNELERLGVRVELNAQAAHFEGEGHVHAVVCADGRRIAAGTVLVSIGAE 240
Query: 239 ANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCA 275
+LA+ AG+ RG+VV+ +S P ++A GD A
Sbjct: 241 PADELARAAGIACERGVVVDATGASSCPAVFAAGDVA 277
>gb|AAA63016.1| (U15183) lipoamide dehydrogenase [Mycobacterium leprae]
Length = 467
Score = 110 bits (272), Expect = 4e-23
Identities = 92/302 (30%), Positives = 147/302 (48%), Gaps = 31/302 (10%)
Query: 95 EVPYDKLVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLI 154
+V ++ +++ATGSK + P TL S + + ++ + + P V++GAG I
Sbjct: 135 KVTFNNVIIATGSKTRLVP---------GTLLSTNVITYEEQILTRELPDSIVIVGAGAI 185
Query: 155 GLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGN 214
G+E G++V +VE L +P D +++ ++K ++ G+K G V I N
Sbjct: 186 GIEFGYVLKNYGVDVTIVEFLPRAMPNE-DAEVSKEIEKQFKKMGIKILTGTKVESISDN 244
Query: 215 P----VEAVKIGD-ETVEADLVLVATGVRANVD---LAK-DAGLEVNRGIVVNEYLQTSD 265
V K G + ++AD VL A G NVD L K L ++ + +++Y+QT+
Sbjct: 245 GSHVLVAVSKDGQFQELKADKVLQAIGFAPNVDGYGLDKVGVALTADKAVDIDDYMQTNV 304
Query: 266 PDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELF- 324
IYAIGD VTGK QL A VAAE IAG + + F
Sbjct: 305 SHIYAIGD-------VTGK---LQLAHVAEAQGVVAAEAIAGAETLALSDYRMMPRATFC 354
Query: 325 DLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGGKPI-TVKLIFRKEEGRLIGAQI 383
+ +FG+TE++A+ G DVVV KF + + + G P VKL+ + G L+G +
Sbjct: 355 QPNVASFGLTEQQARDGGYDVVVAKFPFTANAKAHGMGDPSGFVKLVADAKYGELLGGHM 414
Query: 384 VG 385
+G
Sbjct: 415 IG 416
>gb|AAG20347.1| (AE005108) dihydrolipoamide dehydrogenase; LpdA [Halobacterium sp.
NRC-1]
Length = 474
Score = 110 bits (272), Expect = 4e-23
Identities = 105/334 (31%), Positives = 161/334 (47%), Gaps = 48/334 (14%)
Query: 96 VPYDKLVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIG 155
+ Y+ +++TGS+ P ++ V + + + P V++G G IG
Sbjct: 140 IEYEHAIVSTGSRPIEVPGFDFGDDPVLDSRQALAMAEL--------PSSMVIVGGGYIG 191
Query: 156 LEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP 215
+E + FAKLG++V VVE+L+ +LP D D+A V++ EE G+ F FG+
Sbjct: 192 MELSTVFAKLGVDVTVVEMLDGILPQYGD-DIARPVRQRAEELGIDFHFGLAADSWTDTD 250
Query: 216 -----VEAVKIGDET-VEADLVLVATGVRANVD-LAKDA-GLEVNRG--IVVNEYLQTSD 265
A + G+ET E + VLVA G + D L DA GLE N + + +T
Sbjct: 251 DGIVVTAADEDGEETEFETEKVLVAVGRQPVTDTLNLDAVGLEPNDDGRLETDHEARTDV 310
Query: 266 PDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKD--VKFRPVFNTAITEL 323
+++AIGD A L A + +VAAE IAG+ + ++ V T
Sbjct: 311 ENVFAIGDVAPG----------PMLAHKASKEGEVAAEVIAGEPAALDYQAVPAAVFT-- 358
Query: 324 FDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGGKPIT-------VKLIFRKEEG 376
D EIGT G+TE+ A +G D VVG F + G+ +T V+++ +E G
Sbjct: 359 -DPEIGTVGLTEDDAAAQGFDPVVGTF------PFNASGRALTTGHDDGFVEVVADEESG 411
Query: 377 RLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIA 410
L+GAQIVG E + L +MGA +ED+A
Sbjct: 412 FLLGAQIVGPE-ASELVAELGLAIEMGATLEDVA 444
>sp|O34324|DLD3_BACSU DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONENT OF ACETOIN CLEAVING
SYSTEM) >gi|7431860|pir||G69581 acetoin dehydrogenase E3
component (dihydrolipoamide dehydroge) acoL - Bacillus
subtilis >gi|2245640|gb|AAC05585.1| (AF006075)
dihydrolipoamide dehydrogenase [Bacillus subtilis]
>gi|2633133|emb|CAB12638.1| (Z99108) acetoin
dehydrogenase E3 component (dihydrolipoamide
dehydrogenase) [Bacillus subtilis]
>gi|2780392|dbj|BAA24293.1| (D78509) YfjH [Bacillus
subtilis]
Length = 458
Score = 109 bits (270), Expect = 6e-23
Identities = 103/375 (27%), Positives = 178/375 (47%), Gaps = 48/375 (12%)
Query: 67 EKQKIKMMLGVEAKKIDRERKVVITDKGEV-PYDKLVLATGSKAFIPPIKGVENEGVFTL 125
+K +I+++ G + +R+ + + E+ D++++A+GS+ P + E +
Sbjct: 101 KKNQIQVVKGTASFLSERKLLIEGENGKEIREADQVLIASGSEPIELPFAPFDGEWILDS 160
Query: 126 KSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDK 185
K + I P V++G G+IG E A FA+LG +V ++E + L+P D+
Sbjct: 161 KDALSLSEI--------PSSLVIVGGGVIGCEYAGLFARLGSQVTIIETADRLIPAE-DE 211
Query: 186 DMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAV-KIGDE--TVEADLVLVATGVRANVD 242
D+A + Q+ +EE GV+ + + A+ K G +AD VLVA G + +D
Sbjct: 212 DIARLFQEKLEEDGVEVHTSSRLGRVDQTAKTAIWKSGQREFKTKADYVLVAIGRKPRLD 271
Query: 243 --LAKDAGLEVN-RGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAK 299
+ AG++ + +GI VN ++QT+ P IYA G DA+ G QL +A
Sbjct: 272 GLQLEQAGVDFSPKGIPVNGHMQTNVPHIYACG------DAIGG----IQLAHAAFHEGI 321
Query: 300 VAAEHIAGKDVKF------RPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKF--- 350
+AA H +G+DVK R ++ + EI GMTE +A+ DV +G+F
Sbjct: 322 IAASHASGRDVKINEKHVPRCIYTSP-------EIACIGMTERQARSIYGDVKIGEFSFS 374
Query: 351 -RGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDI 409
G + GK VK++ E G ++G ++G + ++ +A G D+
Sbjct: 375 ANGKALIKQQAEGK---VKIMAEPEFGEIVGVSMIGPDVT--ELIGQAAAIMNGEMTADM 429
Query: 410 AYLETAYAPPISPTI 424
A A P +S T+
Sbjct: 430 AEHFIAAHPTLSETL 444
>gb|AAB62284.1| (U24215) p-cumate dioxygenase ferredoxin reductase subunit
[Pseudomonas putida] >gi|11138221|dbj|BAB17770.1|
(AB042508) ferredoxin reductase subunit of p-cumated
dioxgenase [Pseudomonas putida]
>gi|1588761|prf||2209341A p-cumate
2,3-dioxygenase:SUBUNIT=ferredoxin reductase
[Pseudomonas putida]
Length = 402
Score = 109 bits (269), Expect = 8e-23
Identities = 80/280 (28%), Positives = 142/280 (50%), Gaps = 15/280 (5%)
Query: 2 RVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVI-- 59
++V+IG+G AG+ A LR+ EI ++G+E + Y L S + +PE
Sbjct: 7 KIVIIGAGQAGATVAFGLRRNGFAGEITLVGEESHLPYERPQL----SKEMLRPEASAHK 62
Query: 60 -VFPNEFYEKQKIKMMLGVEAKKIDRERKVVITDKG-EVPYDKLVLATG--SKAFIPPIK 115
+ YE+Q I + LG + + D + ++ D G ++ +D+LV+ATG + +
Sbjct: 63 SIKTRADYEEQSILLELGCKVVRADAQAHSIVLDDGRQLAFDRLVIATGVQPRRLSSAFQ 122
Query: 116 GVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELL 175
G V L++L+D R++ + K ++G G+IGLE A A L V ++E
Sbjct: 123 GAHR--VHYLRTLEDAARLRADL--EAGKSLAIVGGGVIGLEVAAAARALNCPVTLIEAA 178
Query: 176 EHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKIGDETVEADLVLVAT 235
+ L+ +D+ +++ + + +GV R+GV +E++ + + G TV A+ VLV
Sbjct: 179 DRLMSRSVDEVVSAYLDRAHRRNGVDIRYGVAATELLDDGRLRLSDGG-TVPAEAVLVGI 237
Query: 236 GVRANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCA 275
GV N++ + + G+ V+ Y QT P I+A GD A
Sbjct: 238 GVTPNIEGFEHLDITDATGVRVDAYSQTVVPGIFATGDIA 277
>pir||A72548 probable lipoamide dehydrogenase component (E3) of pyruvate
dehydrogenase complex APE1669 - Aeropyrum pernix (strain
K1) >gi|5105357|dbj|BAA80670.1| (AP000062) 467aa long
hypothetical lipoamide dehydrogenase component (E3) of
pyruvate dehydrogenase complex [Aeropyrum pernix]
Length = 467
Score = 108 bits (268), Expect = 1e-22
Identities = 110/366 (30%), Positives = 169/366 (46%), Gaps = 47/366 (12%)
Query: 88 VVITDKGEVPYDKLVLATG-SKAFIPPIKGVENEGVFTLKSLDDVRRIKEYIG-KRNPKK 145
V + G + Y KLVLA G S A IP G+E +G + V + +G +R P +
Sbjct: 120 VEVDGSGSIGYSKLVLALGTSPASIP---GLEPDG-------EVVHNNRTILGLRRKPGR 169
Query: 146 AVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFG 205
+++G G IG+E A A A+LG+EV +VELL+ LLP M +D + +V++ + GVK
Sbjct: 170 MLIVGGGYIGVEYATAMARLGVEVTIVELLDRLLPNM-QRDFSRVVERRLRAEGVKIHTK 228
Query: 206 VGVSEIIGNPVEAV--KIGDETVEADLVLVATGVRANVDLAKDAGLEVNRGIVVNE---- 259
V + AV G +E D +LVA G R N D GLE G+ +++
Sbjct: 229 SKVEAVERRERYAVVEVSGVGKMEYDAILVAVGRRPNTG---DVGLE-KLGVKLDKAGYI 284
Query: 260 -----YLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRP 314
L+T P +YA GD VTG L+ A A VAAE AG
Sbjct: 285 QVDGATLETGVPGVYASGD-------VTGPPLLAH---RAFLQAVVAAERAAGDSSAAFD 334
Query: 315 VFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEY--YPGGKPITVKLIFR 372
D E+ T G+T E A+ G+D + ++ P G + K+++
Sbjct: 335 AKAVPAVVYTDPELATVGLTLEEARAAGVDAAETRLPLASLPRVGAIEGCRECFAKVVYD 394
Query: 373 KEEGRLIGAQIVGGERVWGRIMTLSALA-QMGAKVEDIAYLETAYAPPISPTIDPITVAA 431
+ ++G + I+ +ALA +MGA +ED+A L P +S + + A
Sbjct: 395 RSSRAILGFHVAAPHA--SEIIAEAALAIEMGATLEDLA-LTIHPHPSVSEALKEV---A 448
Query: 432 DMALRK 437
++AL +
Sbjct: 449 ELALER 454
>sp|P43784|DLDH_HAEIN DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONENT OF PYRUVATE AND
2-OXOGLUTARATE DEHYDROGENASES COMPLEXES)
>gi|1074971|pir||H64111 dihydrolipoamide dehydrogenase
(EC 1.8.1.4) - Haemophilus influenzae (strain Rd KW20)
>gi|1574161|gb|AAC22884.1| (U32802) dihydrolipoamide
dehydrogenase (lpdA) [Haemophilus influenzae Rd]
Length = 478
Score = 108 bits (266), Expect = 2e-22
Identities = 113/346 (32%), Positives = 166/346 (47%), Gaps = 58/346 (16%)
Query: 96 VPYDKLVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIG 155
V +D ++A GS+ P E+ ++ D ++KE PKK +++G G+IG
Sbjct: 137 VKFDNAIIAAGSRPVQLPFIPHEDPRIW---DSTDALKLKEV-----PKKLLIMGGGIIG 188
Query: 156 LEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP 215
LE + LG EV VVE+ + ++P DKD+ I K +E+ KF+ + E
Sbjct: 189 LEMGTVYNALGSEVEVVEMFDQVIPA-ADKDVVGIYTKQVEK---KFKL---MLETKVTA 241
Query: 216 VEAVKIG----------DETVEADLVLVATGVRANVDL--AKDAGLEV-NRGIV-VNEYL 261
VEA G ++T D VLVA G N L A AG+EV +RG + V++ +
Sbjct: 242 VEAKDDGIYVSMEGKACNDTKRYDAVLVAIGRVPNGKLIDAGKAGVEVDDRGFIHVDKQM 301
Query: 262 QTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAIT 321
+T+ P IYAIGD + G+ L+ G V VAAE IAG+ F P +I
Sbjct: 302 RTNVPHIYAIGD-------IVGQPMLAHKG---VHEGHVAAEVIAGQKHYFDPKVIPSIA 351
Query: 322 ELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGGKPIT-------VKLIFRKE 374
+ E+ G TE+ K+EG++ V KF + G+ I KLIF K+
Sbjct: 352 -YTEPEVAWVGKTEKECKQEGLNYEVAKF------PWAASGRAIASECSEGMTKLIFDKD 404
Query: 375 EGRLIGAQIVGGERVWGRIMTLSALA-QMGAKVEDIAYLETAYAPP 419
R++G IVG G ++ LA +MG EDIA T +A P
Sbjct: 405 THRVLGGAIVGSN--GGELLGEIGLAIEMGCDAEDIAL--TIHAHP 446
>sp|Q59822|DLDH_STAAU DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONENT OF PYRUVATE COMPLEX)
(MEMBRANE-BOUND RIBOSOME PROTEIN COMPLEX 50 KD SUBUNIT)
>gi|97798|pir||S19723 dihydrolipoamide dehydrogenase (EC
1.8.1.4) - Staphylococcus aureus
>gi|48874|emb|CAA41340.1| (X58434) dihydrolipoamide
dehydrogenase: subunit E3 [Staphylococcus aureus]
Length = 468
Score = 107 bits (265), Expect = 2e-22
Identities = 119/393 (30%), Positives = 177/393 (44%), Gaps = 78/393 (19%)
Query: 70 KIKMMLGVEAKKIDRERKVVITDKGEVPYD--KLVLATGSKAF-IPPIKG----VENEGV 122
K+ ++ G EA +D V+ +K Y+ ++ATGS+ IP K +++ G
Sbjct: 111 KVNIVKG-EAYFVDNNSLRVMDEKSAQTYNFKNAIIATGSRPIEIPNFKFGKRVIDSTGA 169
Query: 123 FTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTM 182
L+ + P K VV+G G IG E AFA G EV ++E + +L
Sbjct: 170 LNLQEV--------------PGKLVVVGGGYIGSELGTAFANFGSEVTILEGAKDILGG- 214
Query: 183 LDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKIG----------DETVEADLVL 232
+K M V+K M+E GV+ V+E + E G ++T+EAD VL
Sbjct: 215 FEKQMTQPVKKGMKEKGVEI-----VTEAMAKSAEETDNGVKVTYEAKGEEKTIEADYVL 269
Query: 233 VATGVRANVDLAKDAGLE------VNRGIV-VNEYLQTSDPDIYAIGDCAEVIDAVTGKR 285
V G R N D + GLE +RG++ V++ +TS +IYAIGD +
Sbjct: 270 VTVGRRPNTD---ELGLEELGVKFADRGLLEVDKQSRTSISNIYAIGDIVPGL------- 319
Query: 286 TLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDV 345
L A AKVAAE I G+ + + A+ + E+ T G +E +AK EG+ +
Sbjct: 320 ---PLAHKASYEAKVAAEAIDGQAAEVDYIGMPAVC-FTEPELATVGYSEAQAKEEGLAI 375
Query: 346 VVGKFRGSTKPEYYPGGKPIT-------VKLIFRKEEGRLIGAQIVGGERVWGRIMTLSA 398
KF Y G+ ++ VKLI KE+ LIGAQ+V G I L
Sbjct: 376 KASKF------PYAANGRALSLDDTNGFVKLITLKEDDTLIGAQVV-GTGASDIISELGL 428
Query: 399 LAQMGAKVEDIAYLETAYAPPISPTIDPITVAA 431
+ G EDIA A+ PT+ +T+ A
Sbjct: 429 AIEAGMNAEDIALTIHAH-----PTLGEMTMEA 456
>pir||E72383 dihydrolipoamide dehydrogenase - Thermotoga maritima (strain MSB8)
>gi|4980884|gb|AAD35466.1|AE001718_3 (AE001718)
dihydrolipoamide dehydrogenase [Thermotoga maritima]
Length = 449
Score = 107 bits (264), Expect = 3e-22
Identities = 96/320 (30%), Positives = 167/320 (52%), Gaps = 37/320 (11%)
Query: 76 GVEAKK----IDRERKVVITDKGE-VPYDKLVLATGSKAFIPPI-KGVENEGVFTLKSLD 129
GVE K ++ + VV+ + GE + LVLA GS +P + + +GV+T D
Sbjct: 104 GVEVFKGTAVVENKNTVVVQETGEKLEAKNLVLAHGS---VPSVFSPFDIDGVWTS---D 157
Query: 130 DVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMAS 189
DV +KE+ PK V++G G+IG+E A F G++V +VE+ EH+LP D D+A
Sbjct: 158 DVFNLKEF-----PKSLVIVGGGVIGVEFATFFGSFGVDVTIVEIAEHILP-YEDSDVAE 211
Query: 190 IVQKNMEEHGVKFRFGVGVSEI--IGNPVEAVKIGDETVEADLVLVATGVRANV-DLAKD 246
V+K ++ GVK +S + + + E ET++A+ VL+A G + N+ + K
Sbjct: 212 EVKKALKRKGVKILEKTKISSLSKVDDGFEVALENGETLKAEKVLLAAGRKPNIPEDVKA 271
Query: 247 AGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIA 306
G+++ +G+V + ++T+ ++YAIGD R+ L A+ VAA++IA
Sbjct: 272 LGVKIEKGVVTDSRMRTNVENVYAIGDI----------RSGIMLAHVAMYEGIVAAKNIA 321
Query: 307 GKDVKFRPVFNTAITELFDL-EIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGGKPI 365
G++ + ++ + +F E+ + G+ E+ E +VV+ KF S + I
Sbjct: 322 GEEEEMD--YSAVPSIIFSSPEVASVGVREKDVNPE--EVVISKFPVSANGRARTMLENI 377
Query: 366 -TVKLIFRKEEGRLIGAQIV 384
K+I K++G ++G IV
Sbjct: 378 GFAKVIADKKDGTVLGMSIV 397
>pir||G71641 dihydrolipoamide dehydrogenase (pdhD) RP805 - Rickettsia prowazekii
>gi|3861332|emb|CAA15231.1| (AJ235273) DIHYDROLIPOAMIDE
DEHYDROGENASE (pdhD) [Rickettsia prowazekii]
Length = 459
Score = 106 bits (263), Expect = 4e-22
Identities = 97/338 (28%), Positives = 168/338 (49%), Gaps = 46/338 (13%)
Query: 67 EKQKIKMMLGVEAKKIDRERKVV-ITDKGEVPYDKLVLATGSKAFIPPIKGVENEGVFTL 125
+K K+ ++ GV + E KV+ + DK V + +++ATG++ I ++G E
Sbjct: 102 KKNKVTIIDGVASFG---ENKVINVNDKPTVKAENIIIATGTRPKI--LQGFE------- 149
Query: 126 KSLDDVRRI----KEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPT 181
D+++I + I + PK ++IG+G IG+E A + +G++V V+E +LP+
Sbjct: 150 ---PDIKQIWTSKEAMIPQHVPKSMIIIGSGAIGIEFASFYNSIGVDVTVIEAKNRILPS 206
Query: 182 MLDKDMASIVQKNMEEHGVKFRFGVGVSEII-----GNPVEA---VKIGDETVEADLVLV 233
D ++A I KN E+ G+K + +++I N +E ++ + ++A ++L+
Sbjct: 207 E-DTEIAGIAHKNFEQKGIKI---ITNAKLIKQTKSQNEIEVELELEGKTQKLQATILLM 262
Query: 234 ATGVRANVDL--AKDAGLEVNRG-IVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQL 290
A G+ AN++ + +EV G I+ N +QT++ IYAIGD A V L
Sbjct: 263 AVGISANIENLGLEKTKVEVENGYILTNGLMQTAESGIYAIGDVAGV----------PCL 312
Query: 291 GTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKF 350
A +AAE IAG + N +I + G+TEE AK G ++ +G+F
Sbjct: 313 AHKASHEGIIAAESIAGLNPNGINKHNIPYCIYSSPQIASVGLTEEIAKDLGYEIKIGRF 372
Query: 351 RGSTKPE-YYPGGKPITVKLIFRKEEGRLIGAQIVGGE 387
S + G +K IF + G L+GA +VG E
Sbjct: 373 PFSANGKALVSGNSDGLIKTIFDVKTGELLGAHMVGLE 410
>pir||T47545 monodehydroascorbate reductase (NADH)-like protein - Arabidopsis
thaliana >gi|7529712|emb|CAB86892.1| (AL132969)
monodehydroascorbate reductase (NADH)-like protein
[Arabidopsis thaliana]
Length = 434
Score = 104 bits (258), Expect = 2e-21
Identities = 97/364 (26%), Positives = 161/364 (43%), Gaps = 43/364 (11%)
Query: 2 RVVVIGSG-TAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
+ +++G G +AG F + + E+ VI KE Y AL S PE
Sbjct: 7 KYIILGGGVSAGYAAKEFANQGVQPGELAVISKEAVAPYERPAL----SKGYLFPEGAAR 62
Query: 61 FPN--------------EFYEKQKIKMMLGVEAKKIDRERKVVITDKGEV-PYDKLVLAT 105
P E Y+++ I+++L E K D K +++ G+V Y L++AT
Sbjct: 63 LPGFHCCVGSGGEKLLPESYKQKGIELILSTEIVKADLSAKSLVSATGDVFKYQTLIIAT 122
Query: 106 GSKAFIPP---IKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAF 162
GS +KG +++ + L+ +DD ++ E I + KAVV+G G IGLE +
Sbjct: 123 GSTVLRLTDFGVKGADSKNILYLREIDDADKLVEAIKAKKGGKAVVVGGGYIGLELSAVL 182
Query: 163 AKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP---VEAV 219
++V +V +P + D+A+ + GVK G S P V+ V
Sbjct: 183 RINNLDVTMVFPEPWCMPRLFTADIAAFYETYYTNKGVKIIKGTVASGFTAQPNGEVKEV 242
Query: 220 KIGD-ETVEADLVLVATGVRANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEV- 277
++ D T+EAD+V+V G + L K E GI + + +TS PD+YA+GD A
Sbjct: 243 QLKDGRTLEADIVIVGVGAKPLTSLFKGQVEEDKGGIKTDAFFKTSVPDVYAVGDVATFP 302
Query: 278 ---------IDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEI 328
++ V R ++ A++ A+ A A ++ + P F + FDL
Sbjct: 303 LKMYGDVRRVEHVDHSRKSAEQAVKAIKAAEGGA---AVEEYDYLPFF---YSRSFDLSW 356
Query: 329 GTFG 332
+G
Sbjct: 357 QFYG 360
>sp|O50286|DLDH_VIBPA DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONENT OF 2-OXOGLUTARATE
DEHYDROGENASE COMPLEX) >gi|2689039|gb|AAC46405.1|
(AF035967) lipoamide dehydrogenase [Vibrio
parahaemolyticus]
Length = 475
Score = 104 bits (256), Expect = 3e-21
Identities = 111/361 (30%), Positives = 166/361 (45%), Gaps = 54/361 (14%)
Query: 81 KIDRERKVVITDKGE---VPYDKLVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKEY 137
K +++ +GE V +D ++A GS+ P E+ ++ D +KE
Sbjct: 118 KFTGPNSILVEGEGESTVVNFDNAIVAAGSRPIKLPFIPHEDSRIW---DSTDALELKEV 174
Query: 138 IGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEE 197
P+K +++G G+IGLE + LG +V VVE+ + ++P DKD+ + K +++
Sbjct: 175 -----PEKLLIMGGGIIGLEMGTVYHSLGSKVEVVEMFDQVIPA-ADKDIVKVYTKRIKD 228
Query: 198 HGVKFRFGVGVSEI------IGNPVEAVKIGDETVEADLVLVATGVRANVDL--AKDAGL 249
K V+ + I +E K E D VLVA G N L + AGL
Sbjct: 229 K-FKLMLETKVTAVEAKEDGIYVSMEGKKAPAEAERYDAVLVAIGRVPNGKLIDGEKAGL 287
Query: 250 EVN-RGIV-VNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAG 307
E++ RG + V++ ++T+ P I+AIGD + G+ L+ G V VAAE I+G
Sbjct: 288 EIDERGFINVDKQMRTNVPHIFAIGD-------IVGQPMLAHKG---VHEGHVAAEVISG 337
Query: 308 KDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGGKPIT- 366
K F P +I + E+ G TE+ AK EGI V F + G+ I
Sbjct: 338 KKHYFDPKVIPSIA-YTEPEVAWVGKTEKEAKAEGIKYEVATF------PWAASGRAIAS 390
Query: 367 ------VKLIFRKEEGRLIGAQIVG--GERVWGRIMTLSALAQMGAKVEDIAYLETAYAP 418
KLIF KE R+IG IVG G + G I +MG EDIA T +A
Sbjct: 391 DCSDGMTKLIFDKETHRVIGGAIVGTNGGELLGEI---GLAIEMGCDAEDIAL--TIHAH 445
Query: 419 P 419
P
Sbjct: 446 P 446
>pir||B82079 pyruvate dehydrogenase, E3 component, lipoamide dehydrogenase
VC2412 [imported] - Vibrio cholerae (group O1 strain
N16961) >gi|9656986|gb|AAF95555.1| (AE004311) pyruvate
dehydrogenase, E3 component, lipoamide dehydrogenase
[Vibrio cholerae]
Length = 475
Score = 104 bits (256), Expect = 3e-21
Identities = 114/351 (32%), Positives = 163/351 (45%), Gaps = 61/351 (17%)
Query: 93 KGEVPYDKLVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAG 152
K V +D ++A GS+ P E+ ++ D +KE P K +++G G
Sbjct: 133 KTVVTFDNAIVAAGSRPIKLPFIPHEDPRIW---DSTDALELKEV-----PGKLLIMGGG 184
Query: 153 LIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEII 212
+IGLE A + LG ++ VVE+ + L+P DKDM + K +++ KF + E
Sbjct: 185 IIGLEMATVYHSLGSKIDVVEMFDQLIPA-ADKDMVKVYTKRIKD---KFNL---MLETK 237
Query: 213 GNPVEAVKIG-----------DETVEADLVLVATGVRANVDL--AKDAGLEVN-RGIV-V 257
VEA + G + D VLVA G N L A+ AGLEV+ RG + V
Sbjct: 238 VTAVEAKEDGIYVSMEGKSAPAQAERYDAVLVAIGRVPNGKLLDAEKAGLEVDERGFIRV 297
Query: 258 NEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFN 317
++ ++T+ P I+AIGD + G+ L+ G V VAAE I+GK F P
Sbjct: 298 DKQMRTNVPHIFAIGD-------IVGQPMLAHKG---VHEGHVAAEVISGKKHYFDPKVI 347
Query: 318 TAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGGKPIT-------VKLI 370
+I + E+ G TE+ AK EGI+ V F + G+ I KLI
Sbjct: 348 PSIA-YTEPEVAWVGKTEKEAKAEGINYEVATF------PWAASGRAIASDCADGMTKLI 400
Query: 371 FRKEEGRLIGAQIVG--GERVWGRIMTLSALAQMGAKVEDIAYLETAYAPP 419
F KE R+IG IVG G + G I +MG EDIA T +A P
Sbjct: 401 FDKETHRVIGGAIVGTNGGELLGEI---GLAIEMGCDAEDIAL--TIHAHP 446
>pir||T08854 ferric leghemoglobin reductase - soybean >gi|546360|gb|AAB30526.1|
(S70187) ferric leghemoglobin reductase, FLbR [Glycine
max=soybeans, Merr, nodules, Peptide, 523 aa]
Length = 523
Score = 103 bits (255), Expect = 3e-21
Identities = 112/385 (29%), Positives = 185/385 (47%), Gaps = 48/385 (12%)
Query: 66 YEKQKIKMMLGVEAKKIDRERKVVITDKGE---VPYDKLVLATGSKAFIPPIKGVENEGV 122
++K K+ + G K + V T +GE V +++ATGS P ++ + +
Sbjct: 136 FQKNKVTYVKGY-GKLVSPSEISVDTTEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKI 194
Query: 123 FTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTM 182
+ + I PKK VVIGAG IGLE + ++G EV VVE ++PTM
Sbjct: 195 VSSTGALALSEI--------PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTM 246
Query: 183 LDKDMASIVQKNMEEHGVKFRF-----GVGVS-EIIGNPVEAVKIGDET-VEADLVLVAT 235
D D+ Q+++E+ G+KF+ GV S + + VE G++T +EAD+VLV+
Sbjct: 247 -DADIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA 305
Query: 236 G---VRANVDLAKDAGLEVNR--GIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQL 290
G + ++L K G+E ++ I+VNE T+ +YAIG D + G L
Sbjct: 306 GRTPFTSGLNLDK-IGVETDKLGRILVNERFSTNVSGVYAIG------DVIPG----PML 354
Query: 291 GTSAVRMAKVAAEHIAGK--DVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVG 348
A E++ GK V + V T + E+ + G TEE+ K G++ VG
Sbjct: 355 AHKAEEDGVACVEYLTGKVGHVDYDKVPGVVYT---NPEVASVGKTEEQVKETGVEYRVG 411
Query: 349 K--FRGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALA-QMGAK 405
K F +++ + + + VK+I KE +++G I+ G ++ +A+A Q A
Sbjct: 412 KFPFLANSRAKAIDNAEGL-VKIIAEKETDKILGVHIMAPNA--GELIHEAAIALQYDAS 468
Query: 406 VEDIAYLETAYAPPISPTIDPITVA 430
EDIA + A+ P +S + +A
Sbjct: 469 SEDIARVCHAH-PTMSEAVKEAAMA 492
>pir||A42494 dihydrolipoamide dehydrogenase (EC 1.8.1.4) - garden pea
Length = 529
Score = 102 bits (253), Expect = 6e-21
Identities = 113/385 (29%), Positives = 186/385 (47%), Gaps = 48/385 (12%)
Query: 66 YEKQKIKMMLGVEAKKIDRERKVVITDKGE---VPYDKLVLATGSKAFIPPIKGVENEGV 122
++K K+ + G K + V T +GE V +++ATGS P ++ + +
Sbjct: 137 FKKNKVTYVKGY-GKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKI 195
Query: 123 FTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTM 182
+ + I PKK VVIGAG IGLE + ++G EV VVE ++PTM
Sbjct: 196 VSSTGALALSEI--------PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTM 247
Query: 183 LDKDMASIVQKNMEEHGVKFRF-----GVGVS-EIIGNPVEAVKIGDET-VEADLVLVAT 235
D ++ Q+++E+ G+KF+ GV S + + VE G++T +EAD+VLV+
Sbjct: 248 -DAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA 306
Query: 236 G---VRANVDLAKDAGLEVNR--GIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQL 290
G + ++L K G+E ++ I+VNE T+ +YAIG D + G L
Sbjct: 307 GRTPFTSGLNLDK-IGVETDKLGRILVNERFSTNVSGVYAIG------DVIPG----PML 355
Query: 291 GTSAVRMAKVAAEHIAGK--DVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVG 348
A E++AGK V + V T + E+ + G TEE+ K G++ VG
Sbjct: 356 AHKAEEDGVACVEYLAGKVGHVDYDKVPGVVYT---NPEVASVGKTEEQVKETGVEYRVG 412
Query: 349 K--FRGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALA-QMGAK 405
K F +++ + + + VK+I KE +++G I+ G ++ +A+A Q A
Sbjct: 413 KFPFMANSRAKAIDNAEGL-VKIIAEKETDKILGVHIMAPNA--GELIHEAAIALQYDAS 469
Query: 406 VEDIAYLETAYAPPISPTIDPITVA 430
EDIA + A+ P +S I +A
Sbjct: 470 SEDIARVCHAH-PTMSEAIKEAAMA 493
>emb|CAA44729.1| (X62995) lipoamide dehydrogenase [Pisum sativum]
>gi|6723874|emb|CAA45066.2| (X63464) dihydrolipoamide
dehydrogenase [Pisum sativum]
Length = 501
Score = 102 bits (253), Expect = 6e-21
Identities = 113/385 (29%), Positives = 186/385 (47%), Gaps = 48/385 (12%)
Query: 66 YEKQKIKMMLGVEAKKIDRERKVVITDKGE---VPYDKLVLATGSKAFIPPIKGVENEGV 122
++K K+ + G K + V T +GE V +++ATGS P ++ + +
Sbjct: 137 FKKNKVTYVKGY-GKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKI 195
Query: 123 FTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTM 182
+ + I PKK VVIGAG IGLE + ++G EV VVE ++PTM
Sbjct: 196 VSSTGALALSEI--------PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTM 247
Query: 183 LDKDMASIVQKNMEEHGVKFRF-----GVGVS-EIIGNPVEAVKIGDET-VEADLVLVAT 235
D ++ Q+++E+ G+KF+ GV S + + VE G++T +EAD+VLV+
Sbjct: 248 -DAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA 306
Query: 236 G---VRANVDLAKDAGLEVNR--GIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQL 290
G + ++L K G+E ++ I+VNE T+ +YAIG D + G L
Sbjct: 307 GRTPFTSGLNLDK-IGVETDKLGRILVNERFSTNVSGVYAIG------DVIPG----PML 355
Query: 291 GTSAVRMAKVAAEHIAGK--DVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVG 348
A E++AGK V + V T + E+ + G TEE+ K G++ VG
Sbjct: 356 AHKAEEDGVACVEYLAGKVGHVDYDKVPGVVYT---NPEVASVGKTEEQVKETGVEYRVG 412
Query: 349 K--FRGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALA-QMGAK 405
K F +++ + + + VK+I KE +++G I+ G ++ +A+A Q A
Sbjct: 413 KFPFMANSRAKAIDNAEGL-VKIIAEKETDKILGVHIMAPNA--GELIHEAAIALQYDAS 469
Query: 406 VEDIAYLETAYAPPISPTIDPITVA 430
EDIA + A+ P +S I +A
Sbjct: 470 SEDIARVCHAH-PTMSEAIKEAAMA 493
>pdb|1DXL|A Chain A, Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum >gi|9955322|pdb|1DXL|B Chain B,
Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum >gi|9955323|pdb|1DXL|C Chain C,
Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum >gi|9955324|pdb|1DXL|D Chain D,
Dihydrolipoamide Dehydrogenase Of Glycine Decarboxylase
From Pisum Sativum
Length = 470
Score = 102 bits (253), Expect = 6e-21
Identities = 113/385 (29%), Positives = 186/385 (47%), Gaps = 48/385 (12%)
Query: 66 YEKQKIKMMLGVEAKKIDRERKVVITDKGE---VPYDKLVLATGSKAFIPPIKGVENEGV 122
++K K+ + G K + V T +GE V +++ATGS P ++ + +
Sbjct: 106 FKKNKVTYVKGY-GKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKI 164
Query: 123 FTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTM 182
+ + I PKK VVIGAG IGLE + ++G EV VVE ++PTM
Sbjct: 165 VSSTGALALSEI--------PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTM 216
Query: 183 LDKDMASIVQKNMEEHGVKFRF-----GVGVS-EIIGNPVEAVKIGDET-VEADLVLVAT 235
D ++ Q+++E+ G+KF+ GV S + + VE G++T +EAD+VLV+
Sbjct: 217 -DAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA 275
Query: 236 G---VRANVDLAKDAGLEVNR--GIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQL 290
G + ++L K G+E ++ I+VNE T+ +YAIG D + G L
Sbjct: 276 GRTPFTSGLNLDK-IGVETDKLGRILVNERFSTNVSGVYAIG------DVIPG----PML 324
Query: 291 GTSAVRMAKVAAEHIAGK--DVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVG 348
A E++AGK V + V T + E+ + G TEE+ K G++ VG
Sbjct: 325 AHKAEEDGVACVEYLAGKVGHVDYDKVPGVVYT---NPEVASVGKTEEQVKETGVEYRVG 381
Query: 349 K--FRGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALA-QMGAK 405
K F +++ + + + VK+I KE +++G I+ G ++ +A+A Q A
Sbjct: 382 KFPFMANSRAKAIDNAEGL-VKIIAEKETDKILGVHIMAPNA--GELIHEAAIALQYDAS 438
Query: 406 VEDIAYLETAYAPPISPTIDPITVA 430
EDIA + A+ P +S I +A
Sbjct: 439 SEDIARVCHAH-PTMSEAIKEAAMA 462
>pir||T06407 monodehydroascorbate reductase (NADH) (EC 1.6.5.4), cytosolic -
tomato >gi|832876|gb|AAC41654.1| (L41345) ascorbate free
radical reductase [Lycopersicon esculentum]
>gi|1097368|prf||2113407A ascorbate free radical
reductase [Lycopersicon esculentum]
Length = 433
Score = 102 bits (251), Expect = 1e-20
Identities = 85/297 (28%), Positives = 138/297 (45%), Gaps = 27/297 (9%)
Query: 2 RVVVIGSG-TAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
+ V++G G +AG F ++ + E+ +I KE Y AL S PE
Sbjct: 7 KYVIVGGGVSAGYAAREFAKQGVKPGELAIISKEAVAPYERPAL----SKAYLFPEGAAR 62
Query: 61 FPN--------------EFYEKQKIKMMLGVEAKKIDRERKVVITDKGE-VPYDKLVLAT 105
P E+Y ++ I ++L E K D K +++ GE Y LV+AT
Sbjct: 63 LPGFHVCVGSGGERQLPEWYAEKGISLILSTEIVKADLASKTLVSAAGESFKYQTLVIAT 122
Query: 106 GS---KAFIPPIKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAF 162
G+ K ++G +++ +F L+ +DD ++ E + + KAVV+G G IGLE +
Sbjct: 123 GTTVLKLSDFGVQGADSKNIFYLREIDDADQLVEALKAKKNGKAVVVGGGYIGLELSAVL 182
Query: 163 AKLGMEVLVVELLEHLLPTMLDKDMASIVQ---KNMEEHGVKFRFGVGVSEIIGNPVEAV 219
+EV +V +P + + +A+ + KN + +K VG V+ V
Sbjct: 183 RLNNIEVNMVYPEPWCMPRLFTEGIAAFYEGYYKNKGVNIIKGTVAVGFDTHPNGEVKEV 242
Query: 220 KIGD-ETVEADLVLVATGVRANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCA 275
K+ D +EAD+V+V G R L K E GI + + +TS PD+YA+GD A
Sbjct: 243 KLKDGRVLEADIVVVGVGARPLTTLFKGQVEEEKGGIKTDAFFKTSVPDVYAVGDVA 299
>sp|P31023|DLDH_PEA DIHYDROLIPOAMIDE DEHYDROGENASE, MITOCHONDRIAL PRECURSOR (GLYCINE
CLEAVAGE SYSTEM L PROTEIN) >gi|100037|pir||S22384
dihydrolipoamide dehydrogenase (EC 1.8.1.4) precursor -
garden pea
Length = 501
Score = 101 bits (250), Expect = 1e-20
Identities = 108/365 (29%), Positives = 177/365 (47%), Gaps = 47/365 (12%)
Query: 66 YEKQKIKMMLGVEAKKIDRERKVVITDKGE---VPYDKLVLATGSKAFIPPIKGVENEGV 122
++K K+ + G K + V T +GE V +++ATGS P ++ + +
Sbjct: 137 FKKNKVTYVKGY-GKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDEKKI 195
Query: 123 FTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTM 182
+ + I PKK VVIGAG IGLE + ++G EV VVE ++PTM
Sbjct: 196 VSSTGALALSEI--------PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTM 247
Query: 183 LDKDMASIVQKNMEEHGVKFRF-----GVGVS-EIIGNPVEAVKIGDET-VEADLVLVAT 235
D ++ Q+++E+ G+KF+ GV S + + VE G++T +EAD+VLV+
Sbjct: 248 -DAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA 306
Query: 236 G---VRANVDLAKDAGLEVNR--GIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQL 290
G + ++L K G+E ++ I+VNE T+ +YAIG D + G L
Sbjct: 307 GRTPFTSGLNLDK-IGVETDKLGRILVNERFSTNVSGVYAIG------DVIPG----PML 355
Query: 291 GTSAVRMAKVAAEHIAGK--DVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVG 348
A E++AGK V + V T + E+ + G TEE+ K G++ VG
Sbjct: 356 AHKAEEDGVACVEYLAGKVGHVDYDKVPGVVYT---NPEVASVGKTEEQVKETGVEYRVG 412
Query: 349 K--FRGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALA-QMGAK 405
K F +++ + + + VK+I KE +++G I+ G ++ +A+A Q A
Sbjct: 413 KFPFMANSRAKAIDNAEGL-VKIIAEKETDKILGVHIMAPNA--GELIHEAAIALQYDAS 469
Query: 406 VEDIA 410
EDIA
Sbjct: 470 SEDIA 474
>sp|O50311|DLDH_CHLVI DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONENT OF PYRUVATE AND
2-OXOGLUTARATE DEHYDROGENASES COMPLEXES)
>gi|7469227|pir||T17191 dihydrolipoamide dehydrogenase
(EC 1.8.1.4) - Chlorobium vibrioforme
>gi|2661853|emb|CAB06298.1| (Z83933) dehydrolipoamide
dehydrogenase [Chlorobium vibrioforme]
Length = 469
Score = 101 bits (250), Expect = 1e-20
Identities = 119/426 (27%), Positives = 199/426 (45%), Gaps = 46/426 (10%)
Query: 20 RKLDRKAEIIVIGKEPT-MQYSPCALPHVISGTIEKPEDVIVFPNEFYE----KQKIKMM 74
+ L R AE+ + K P+ + L ++ +++ V + ++ E K K+++
Sbjct: 57 KALLRSAEVYDLAKNPSEFGVNVSELSFDLAQAVKRSRKVSLKSSKGVEFMLKKAKVEVW 116
Query: 75 LGVEAKKIDRERKVVITDKGEVPYD--KLVLATGSKAFIPPIKGVENEGVFTLKSLDDVR 132
G + KV D E + +++ATG++ + P G+E +G + S + +
Sbjct: 117 RGEAVLTGSKGVKVTAEDGSERSLEAANIIVATGAQPRVIP--GLEPDGKKIITSREAL- 173
Query: 133 RIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQ 192
I K P+ +V+G G IG+E A +AK G +V +VEL+ LLP + +++ ++
Sbjct: 174 -----ILKDVPESMIVVGGGAIGVEMAWFYAKAGAKVTIVELMPRLLPAE-EAEVSEALK 227
Query: 193 KNMEEHGVKFRFG-----VGVSEIIGNPVEAVKIGDE--TVEADLVLVATGVRANVD-LA 244
++ E+ + + G V +SE G + + G E +EA +LVA GV +D L
Sbjct: 228 RSFEKVDITVQCGAKLGNVAISE-FGVNADLLAEGKEPQKIEASCMLVAVGVTGVIDGLG 286
Query: 245 KD-AGLEVNRGIV-VNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAA 302
D AG+E RG + +E +TS IYAIGD V G L+ A A +A
Sbjct: 287 LDAAGIETERGFIRTDELCRTSASGIYAIGD-------VRGGMLLAH---KASAEAAIAV 336
Query: 303 EHIAGK--DVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGK--FRGSTKPEY 358
E IAGK + P+ + + + G+TEE A G V+VG+ F S K
Sbjct: 337 EAIAGKLPEPLSEPLIPRCV--YAQPSVASVGLTEEAAIAAGYKVLVGRSQFAASGKANA 394
Query: 359 YPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYLETAYAP 418
Y G VKL+F E G+++G ++G + V I L + G E + A+ P
Sbjct: 395 Y-GQLEGFVKLVFNAETGKMLGGHLIGHDAV-ELIGELGLACRYGVTAEGLVGTVHAH-P 451
Query: 419 PISPTI 424
+S T+
Sbjct: 452 TLSETV 457
>gb|AAF49294.1| (AE003522) CG7430 gene product [Drosophila melanogaster]
Length = 504
Score = 101 bits (250), Expect = 1e-20
Identities = 111/395 (28%), Positives = 178/395 (44%), Gaps = 65/395 (16%)
Query: 66 YEKQKIKMMLG---------VEAKKIDRERKVVITDKGEVPYDKLVLATGSKAFIPPIKG 116
++K K+ + G VE KK D + V T +++ATGS+ + P G
Sbjct: 138 FKKNKVTQLTGFGTIVNPNEVEVKKSDGSTETVKTKN-------ILIATGSE--VTPFPG 188
Query: 117 VENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLE 176
+E + + S ++ K PK VVIGAG+IGLE +++LG EV +E ++
Sbjct: 189 IEIDEEVIVSSTGALKLAKV------PKHLVVIGAGVIGLELGSVWSRLGAEVTAIEFMD 242
Query: 177 HLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVS------EIIGNPVEAVKIGD-ETVEAD 229
+ +D +++ QK + + G+KF+ G V+ + + VE K G+ E ++ D
Sbjct: 243 TIGGVGIDNEVSKTFQKVLTKQGLKFKLGTKVTAASRSGDNVTVSVENAKSGEKEEIQCD 302
Query: 230 LVLVATGVRANVDLAKDAGLEV------NRG-IVVNEYLQTSDPDIYAIGDCAEVIDAVT 282
+LV+ G R + GLE +RG I VN QT P+IYAIGDC
Sbjct: 303 ALLVSVGRR---PYTEGLGLEAVGIVKDDRGRIPVNATFQTVVPNIYAIGDCIHG----- 354
Query: 283 GKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELF-DLEIGTFGMTEERAKRE 341
L A + E I G V +N + ++ E+ G +EE+ K+E
Sbjct: 355 -----PMLAHKAEDEGLITIEGINGGHVHID--YNCVPSVVYTHPEVAWVGKSEEQLKQE 407
Query: 342 GIDVVVGKF----RGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLS 397
G+ VGKF K G VK++ + +++G I+G G ++ +
Sbjct: 408 GVAYKVGKFPFLANSRAKTNNDTDG---FVKVLADQATDKILGTHIIGPGA--GELINEA 462
Query: 398 ALA-QMGAKVEDIAYLETAYAPPISPTIDPITVAA 431
LA + GA ED+A + A+ P S + VAA
Sbjct: 463 VLAMEYGAAAEDVARVCHAH-PTCSEALREANVAA 496
>sp|P09063|DLD1_PSEPU DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONENT OF BRANCHED-CHAIN
ALPHA-KETO ACID DEHYDROGENASE COMPLEX) (LPD-VAL)
>gi|66126|pir||DEPSLP dihydrolipoamide dehydrogenase (EC
1.8.1.4) - Pseudomonas putida >gi|790518|gb|AAA65618.1|
(M57613) lipoamide dehydrogenase [Pseudomonas putida]
Length = 459
Score = 101 bits (249), Expect = 2e-20
Identities = 105/353 (29%), Positives = 167/353 (46%), Gaps = 37/353 (10%)
Query: 67 EKQKIKMMLGVEAKKIDRERKVVITDKGEVPYDKLVLATGSKAFIPPIKGVENEGVFTLK 126
+K +K++ G AK +D K V D + + L+LATGS + P+ + + + +
Sbjct: 108 KKHGVKVVHGW-AKVLDG--KQVEVDGQRIQCEHLLLATGSSSVELPMLPLGGPVISSTE 164
Query: 127 SLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKD 186
+L K P+ VV+G G IGLE A+ KLG +V VVE E +LPT D +
Sbjct: 165 ALAP---------KALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-YDSE 214
Query: 187 MASIVQKNMEEHGVKFRFGVGVSEIIGNPVEA--VKIGDETVEADLVLVATGVRANVDLA 244
+ + V +++++ G+ G V + A K G +EAD VLVA G R
Sbjct: 215 LTAPVAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVGRRPR---T 271
Query: 245 KDAGLEV------NRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMA 298
K LE I ++E QTS +++AIGD V G+ L+ A+
Sbjct: 272 KGFNLECLDLKMNGAAIAIDERCQTSMHNVWAIGD-------VAGEPMLAH---RAMAQG 321
Query: 299 KVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEY 358
++ AE IAGK +F P A+ D E+ G T E+A ++G+D +V +F +
Sbjct: 322 EMVAEIIAGKARRFEPAAIAAVC-FTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRA 380
Query: 359 YP-GGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIA 410
K V+++ R++ ++G Q V G V + +MGA +ED+A
Sbjct: 381 MSLESKSGFVRVVARRDNHLILGWQAV-GVAVSELSTAFAQSLEMGACLEDVA 432
>pdb|1LVL| Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4) Complex With
Nicotinamide-Adenine-Dinucleotide (Nad+)
Length = 458
Score = 101 bits (249), Expect = 2e-20
Identities = 105/353 (29%), Positives = 167/353 (46%), Gaps = 37/353 (10%)
Query: 67 EKQKIKMMLGVEAKKIDRERKVVITDKGEVPYDKLVLATGSKAFIPPIKGVENEGVFTLK 126
+K +K++ G AK +D K V D + + L+LATGS + P+ + + + +
Sbjct: 107 KKHGVKVVHGW-AKVLDG--KQVEVDGQRIQCEHLLLATGSSSVELPMLPLGGPVISSTE 163
Query: 127 SLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKD 186
+L K P+ VV+G G IGLE A+ KLG +V VVE E +LPT D +
Sbjct: 164 ALAP---------KALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPT-YDSE 213
Query: 187 MASIVQKNMEEHGVKFRFGVGVSEIIGNPVEA--VKIGDETVEADLVLVATGVRANVDLA 244
+ + V +++++ G+ G V + A K G +EAD VLVA G R
Sbjct: 214 LTAPVAESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVGRRPR---T 270
Query: 245 KDAGLEV------NRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMA 298
K LE I ++E QTS +++AIGD V G+ L+ A+
Sbjct: 271 KGFNLECLDLKMNGAAIAIDERCQTSMHNVWAIGD-------VAGEPMLAH---RAMAQG 320
Query: 299 KVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEY 358
++ AE IAGK +F P A+ D E+ G T E+A ++G+D +V +F +
Sbjct: 321 EMVAEIIAGKARRFEPAAIAAVC-FTDPEVVVVGKTPEQASQQGLDCIVAQFPFAANGRA 379
Query: 359 YP-GGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIA 410
K V+++ R++ ++G Q V G V + +MGA +ED+A
Sbjct: 380 MSLESKSGFVRVVARRDNHLILGWQAV-GVAVSELSTAFAQSLEMGACLEDVA 431
>pir||A55333 monodehydroascorbate reductase (NADH) (EC 1.6.5.4) - garden pea
>gi|497120|gb|AAA60979.1| (U06461) monodehydroascorbate
reductase [Pisum sativum]
Length = 433
Score = 101 bits (249), Expect = 2e-20
Identities = 112/439 (25%), Positives = 186/439 (41%), Gaps = 50/439 (11%)
Query: 2 RVVVIGSG-TAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
+ ++IG G +AG F+++ E+ +I KE Y AL S PE
Sbjct: 6 KYIIIGGGVSAGYAAREFVKQGVHPGELAIISKEAVAPYERPAL----SKAYLFPESPAR 61
Query: 61 FPN--------------EFYEKQKIKMMLGVEAKKIDRERKVVITDKGE-VPYDKLVLAT 105
P E+Y ++ I++ L E D K + + GE Y LV+AT
Sbjct: 62 LPGFHTCVGSGGERLLPEWYSEKGIQLYLSTEIVSADLAAKFLKSANGEHFDYQTLVIAT 121
Query: 106 GSKAFIPP---IKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAF 162
GS + G + +F L+ +DD ++ E I ++ K VV+G G IGLE +
Sbjct: 122 GSAVIRLTDFGVIGANAKNIFYLREVDDADKLYEAIKRKKNAKRVVVGGGYIGLELSAVL 181
Query: 163 AKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFG---VGVSEIIGNPVEAV 219
++V +V +P + ++A+ + G+ G VG + V+ V
Sbjct: 182 KLNDLDVTMVYPEPWCMPRLFTSEIAAFYEGYYANKGINIIKGTVAVGFTANSDGEVKEV 241
Query: 220 KIGDETV-EADLVLVATGVRANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCA--- 275
K+ D V EAD+V+V G R + L K E + GI + + +TS PD+YA+GD A
Sbjct: 242 KLKDGRVLEADIVIVGVGGRPQISLFKGQVEEQHGGIKTDSFFKTSVPDVYAVGDVATFP 301
Query: 276 -EVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMT 334
++ + V + SA + AK GK V+ + FDL +G
Sbjct: 302 LKLYNDVRRVEHVDHARKSAEQAAKAIFAADVGKSVEEYDYLPYFYSRSFDLSWQFYG-- 359
Query: 335 EERAKREGIDVVVG-KFRGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRI 393
G V+ G S+KP++ + +EG+++GA + GG +
Sbjct: 360 ----DNVGETVLFGDNDPASSKPKFG----------TYWIKEGKVVGAFLEGGTPDENK- 404
Query: 394 MTLSALAQMGAKVEDIAYL 412
++ +A+ VED+ L
Sbjct: 405 -AIAKVARAKPAVEDVNQL 422
>gb|AAD26637.1|AF111947_1 (AF111947) cytochrome P-450 reductase homolog [Myxococcus xanthus]
Length = 545
Score = 101 bits (249), Expect = 2e-20
Identities = 90/319 (28%), Positives = 150/319 (46%), Gaps = 20/319 (6%)
Query: 2 RVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYS-PCALPHVISGTIEKPEDVIV 60
R+V++G+ AG AL R + +IG E Y P V++G ++ ++
Sbjct: 97 RIVIVGASLAGLTAALMFRTQGFAGSLTLIGDEACDPYDRPPLSKQVLTGWVKADHTLLP 156
Query: 61 FPNEFYEKQKIKMMLGVEAKKIDRERK-VVITDKGEVPYDKLVLATGSKAFIPPIKGVEN 119
+ +E LGV A +D K V++ D V +D+L++ATG++A P +
Sbjct: 157 YSDEL----DADWHLGVRAMGLDLAGKQVLLADGNRVQFDRLLIATGARARPWPNDAEAS 212
Query: 120 -EGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHL 178
EGV +++ DD +++ + R P + +VIG G G E A A +LG+ V V E
Sbjct: 213 LEGVEVVRTRDDAAQLQRRLAAR-PGRVLVIGGGFTGSEVASACRELGLPVTVTERGATP 271
Query: 179 LPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP---VEAVKIGD-ETVEADLVLVA 234
L L + ++ +HGV R GV V+ + G+ + D T+ D+ +VA
Sbjct: 272 LVGALGGVVGAVAAALQRDHGVDLRCGVTVTRLEGDANGRLRRAHFSDGSTLNVDVAVVA 331
Query: 235 TGVRANVDLAKDAGLEVNR-GIVVNEYLQTSD------PDIYAIGDCAEVIDAVTGKRTL 287
G NV+ +D+GL V R G+ + D +I+ GD A V + + L
Sbjct: 332 LGAIRNVECVRDSGLAVTRWGVACDAACHAFDINGLVTRNIFVAGDVARVPHPIYDYQFL 391
Query: 288 S-QLGTSAVRMAKVAAEHI 305
S + +AV AK+AA ++
Sbjct: 392 SLEHWGNAVTQAKIAAHNM 410
>dbj|BAB04498.1| (AP001509) dihydrolipoamide dehydrogenase [Bacillus halodurans]
Length = 462
Score = 101 bits (248), Expect = 2e-20
Identities = 92/333 (27%), Positives = 161/333 (47%), Gaps = 44/333 (13%)
Query: 70 KIKMMLGVEAKKIDRERKVVITDKGE---VPYDKLVLATGSKAFIPPIKGVENEGVFTLK 126
KI + G + DR K+ + + E V + +++ATG++ IPP+ G+ V T
Sbjct: 105 KIDVYFGYGEIERDRSVKIKMKETAEIVSVRTENMIVATGTEPTIPPVPGLAEAVVDTSD 164
Query: 127 SLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKD 186
++ ++ I P+ V+IG G+IG+E A F+ L ++V +VE+ + +LP D++
Sbjct: 165 TIFELDSI--------PQSIVIIGGGVIGVEIACIFSSLQVDVTIVEMGKRILP-QEDEE 215
Query: 187 MASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKIGDET-----VEADLVLVATGVRANV 241
A ++ K + GV V+ ++ + V+I T +E + +L+A G N+
Sbjct: 216 AAKVLAKALAAKGVHLLTNTKVTAVLQGDKQKVEIETSTGDRDWLEGERILLAVGRTPNL 275
Query: 242 DLAKDAGLEV-NRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKV 300
+ K+ GL + + V++ ++TSDP IYAIGD V G L+ + ++ V
Sbjct: 276 SVVKELGLGMAGPFLKVDDQMRTSDPSIYAIGD-------VIGGWQLAHVASAE---GLV 325
Query: 301 AAEHIAGK-DVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYY 359
AA + +GK ++ R V I EI + G+TE+ AK +G V K +
Sbjct: 326 AAANASGKVEIINRQVIPRCI--YTQPEIASVGLTEQEAKEKGYSYKV------VKVDLR 377
Query: 360 PGGKPIT-------VKLIFRKEEGRLIGAQIVG 385
GK + VK+I G ++G +VG
Sbjct: 378 ANGKAMALGETTGFVKMIADPNYGEILGVTMVG 410
>sp|P95596|DLDH_RHOCA DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONENT OF PYRUVATE AND
2-OXOGLUTARATE DEHYDROGENASES COMPLEXES)
>gi|1814070|gb|AAC45483.1| (U84577) dihydrolipoamide
dehydrogenase [Rhodobacter capsulatus]
Length = 454
Score = 100 bits (247), Expect = 3e-20
Identities = 108/343 (31%), Positives = 158/343 (45%), Gaps = 59/343 (17%)
Query: 101 LVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAE 160
+V+ATGS++ P ++ + V T + ++ PK VVIGAG+IGLE
Sbjct: 127 IVIATGSESSGLPGIEIDEQTVVTSTGALSLAKV--------PKSMVVIGAGVIGLELGS 178
Query: 161 AFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGV---GVSEIIG-NPV 216
+A+LG EV VVE L+ + P M D ++A +Q+ + G+KF G GV + G N V
Sbjct: 179 VYARLGAEVTVVEYLDAITPGM-DAEVAKGLQRILTRQGLKFVLGAAVQGVDKAKGKNTV 237
Query: 217 EAVKIGDET---VEADLVLVATGVRANVDLAKDAGLE------VNRG-IVVNEYLQTSDP 266
DE+ +EA++VLVATG + K GLE + RG + + + T+ P
Sbjct: 238 RYTLRKDESAHAIEAEVVLVATGRK---PFTKGLGLEALGVEMLPRGQVKADSHWATNVP 294
Query: 267 DIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGK------DVKFRPVFNTAI 320
+YAIG DA+ G L A AE IAGK DV ++ T
Sbjct: 295 GLYAIG------DAIVG----PMLAHKAEDEGMAVAEVIAGKHGHVNYDVIPGVIYTTP- 343
Query: 321 TELFDLEIGTFGMTEERAKREGIDVVVGKF----RGSTKPEYYPGGKPITVKLIFRKEEG 376
E+ G TE+ K+EG VGKF G K + G VK++
Sbjct: 344 ------EVAAVGKTEDALKQEGRAYKVGKFSFMGNGRAKAVFQAEG---FVKILADAATD 394
Query: 377 RLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYLETAYAPP 419
R++GA I+ G I + + GA +D+A T +A P
Sbjct: 395 RILGAHII-GPSAGDMIHEICVAMEFGASAQDLAL--TCHAHP 434
>pir||B70828 hypothetical protein Rv0462 - Mycobacterium tuberculosis (strain
H37RV) >gi|2909538|emb|CAA17417.1| (AL021933)
hypothetical protein Rv0462 [Mycobacterium tuberculosis]
Length = 464
Score = 100 bits (247), Expect = 3e-20
Identities = 92/301 (30%), Positives = 139/301 (45%), Gaps = 31/301 (10%)
Query: 96 VPYDKLVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIG 155
V +D ++ATGS + P T S + V ++ + + PK ++ GAG IG
Sbjct: 133 VTFDNAIIATGSSTRLVP---------GTSLSANVVTYEEQILSRELPKSIIIAGAGAIG 183
Query: 156 LEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEII--G 213
+E G++V +VE L LP D D++ ++K ++ GV V I G
Sbjct: 184 MEFGYVLKNYGVDVTIVEFLPRALPNE-DADVSKEIEKQFKKLGVTILTATKVESIADGG 242
Query: 214 NPVEAVKIGD---ETVEADLVLVATGVRANVD---LAK-DAGLEVNRGIVVNEYLQTSDP 266
+ V D + ++A+ VL A G NV+ L K L + I V++Y++T+
Sbjct: 243 SQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYMRTNVG 302
Query: 267 DIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELF-D 325
IYAIGD V G L QL A VAAE IAG + F
Sbjct: 303 HIYAIGD-------VNG---LLQLAHVAEAQGVVAAETIAGAETLTLGDHRMLPRATFCQ 352
Query: 326 LEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGGKPI-TVKLIFRKEEGRLIGAQIV 384
+ +FG+TE++A+ EG DVVV KF + + + G P VKL+ + G L+G +V
Sbjct: 353 PNVASFGLTEQQARNEGYDVVVAKFPFTANAKAHGVGDPSGFVKLVADAKHGELLGGHLV 412
Query: 385 G 385
G
Sbjct: 413 G 413
>pir||T06332 ferric leghemoglobin reductase isoenzyme 2 precursor - soybean
>gi|3309269|gb|AAC26053.1| (AF074940) ferric
leghemoglobin reductase-2 precursor [Glycine max]
Length = 500
Score = 100 bits (247), Expect = 3e-20
Identities = 111/384 (28%), Positives = 182/384 (46%), Gaps = 46/384 (11%)
Query: 66 YEKQKIKMMLGVEAKKIDRERKVVITDKGE--VPYDKLVLATGSKAFIPPIKGVENEGVF 123
++K K+ + G E V T+ G V +++ATGS P ++ + V
Sbjct: 136 FKKNKVNYVKGYGKLVSPSEVSVDTTEGGNTVVKGKHIIIATGSDVKSLPGITIDEKKVV 195
Query: 124 TLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTML 183
+ + I PK+ +VIGAG IGLE + +LG E+ VVE ++PTM
Sbjct: 196 SSTGALALTEI--------PKRLIVIGAGYIGLEMGSVWGRLGSEITVVEFASEIVPTM- 246
Query: 184 DKDMASIVQKNMEEHGVKFRF-----GVGVS-EIIGNPVEAVKIGDE-TVEADLVLVATG 236
D ++ Q+++E+ G+KF+ GV S + + +E GD+ T+EAD+VLV+ G
Sbjct: 247 DAEVRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTLEPAAGGDQTTLEADVVLVSAG 306
Query: 237 ---VRANVDLAKDAGLEVNR--GIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLG 291
A + L K G+E ++ I+VNE T+ +YAIG D + G L
Sbjct: 307 RTPFTAELGLDK-IGVETDKIGRILVNERFATNVSGVYAIG------DVIPG----PMLA 355
Query: 292 TSAVRMAKVAAEHIAGK--DVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGK 349
A E+IAGK V + V T E+ + G TEE+ K G++ VGK
Sbjct: 356 HKAEEDGVACVEYIAGKVGHVDYDKVPGVVYTM---PEVASVGKTEEQVKELGVEYRVGK 412
Query: 350 --FRGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALA-QMGAKV 406
F +++ + + + VK++ KE +++G I+ G ++ +A+A Q A
Sbjct: 413 FPFLANSRAKAIDNAEGL-VKILAEKETDKILGVHIMAPNA--GELIHEAAIALQYDASS 469
Query: 407 EDIAYLETAYAPPISPTIDPITVA 430
EDIA + A+ P +S + +A
Sbjct: 470 EDIARVCHAH-PTMSEAVKEAAMA 492
>pir||F83365 lipoamide dehydrogenase-Val PA2250 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948276|gb|AAG05638.1|AE004650_9 (AE004650)
lipoamide dehydrogenase-Val [Pseudomonas aeruginosa]
Length = 464
Score = 100 bits (247), Expect = 3e-20
Identities = 96/328 (29%), Positives = 163/328 (49%), Gaps = 48/328 (14%)
Query: 99 DKLVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEG 158
+ L+LA GS++ PI + + + + ++L PK+ VV+G G IGLE
Sbjct: 142 EHLLLAAGSQSVELPILPLGGKVISSTEALAPGSL---------PKRLVVVGGGYIGLEL 192
Query: 159 AEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEA 218
A+ KLG+EV VVE +LP D+++ V + + GV+ G ++G
Sbjct: 193 GTAYRKLGVEVAVVEAQPRILPG-YDEELTKPVAQALRRLGVELYLG---HSLLGPSENG 248
Query: 219 VKIGD-----ETVEADLVLVATGVRANVD--LAKDAGLEVN-RGIVVNEYLQTSDPDIYA 270
V++ D + AD VLVA G + + + GL++N R + V++ +TS +++A
Sbjct: 249 VRVRDGAGEEREIAADQVLVAVGRKPRSEGWNLESLGLDMNGRAVKVDDQCRTSMRNVWA 308
Query: 271 IGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGT 330
IGD A G+ L+ A+ ++ AE IAGK +F PV A+ D E+
Sbjct: 309 IGDLA-------GEPMLAH---RAMAQGEMVAELIAGKRRQFAPVAIPAVC-FTDPEVVV 357
Query: 331 FGMTEERAKREGIDVVVGKFRGSTKPEYYPGGKPIT-------VKLIFRKEEGRLIGAQI 383
G++ E+AK G+D +V F + G+ +T V+++ R++ ++G Q
Sbjct: 358 AGLSPEQAKDAGLDCLVASF------PFAANGRAMTLEANEGFVRVVARRDNHLVVGWQA 411
Query: 384 VGGERVWGRIMTLSALA-QMGAKVEDIA 410
VG + + T A + +MGA++EDIA
Sbjct: 412 VG--KAVSELSTAFAQSLEMGARLEDIA 437
>gb|AAG17888.1| (AF295339) dihydrolipoamide dehydrogenase precursor [Solanum
tuberosum]
Length = 504
Score = 100 bits (247), Expect = 3e-20
Identities = 98/295 (33%), Positives = 143/295 (48%), Gaps = 39/295 (13%)
Query: 143 PKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKF 202
PK+ VVIGAG IGLE + +LG EV VVE ++PTM D ++ Q+ +E+ +KF
Sbjct: 211 PKRLVVIGAGYIGLEMGSVWGRLGSEVTVVEFASDIVPTM-DGEVRKQFQRALEKQKMKF 269
Query: 203 RFGVGVSEI------IGNPVEAVKIGDETV-EADLVLVATG-VRANVDLAKDA-GLEVNR 253
V + + +E GD+T+ EAD+VLV+ G V L D G+E ++
Sbjct: 270 MLNTKVVSVDATGDGVKLTLEPSAGGDQTILEADVVLVSAGRVPFTSGLGLDTIGVETDK 329
Query: 254 G--IVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKD-- 309
I+VNE T+ P ++AIG D + G L A E IAGK+
Sbjct: 330 AGRILVNERFATNVPGVHAIG------DVIPG----PMLAHKAEEDGVACVEFIAGKEGH 379
Query: 310 VKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGK--FRGSTKPEYYPGGKPITV 367
V + V T E+ G TEE+ K G+D VGK F +++ + + I V
Sbjct: 380 VDYDMVPGVVYTH---PEVAYVGKTEEQVKSLGVDYRVGKFPFLANSRAKAIDDAEGI-V 435
Query: 368 KLIFRKEEGRLIGAQIV---GGERVWGRIMTLSALAQMGAKVEDIAYLETAYAPP 419
K+I KE +++G I+ GE + ++ L Q GA EDIA T +A P
Sbjct: 436 KVIAEKESDKILGVHIMSPNAGELIHEAVLAL----QYGASSEDIA--RTCHAHP 484
>sp|P09623|DLDH_PIG DIHYDROLIPOAMIDE DEHYDROGENASE, MITOCHONDRIAL PRECURSOR
>gi|66122|pir||DEPGLP dihydrolipoamide dehydrogenase (EC
1.8.1.4) precursor - pig >gi|164539|gb|AAA31069.1|
(J03489) lipoamide dehydrogenase precursor [Sus scrofa]
Length = 509
Score = 100 bits (246), Expect = 4e-20
Identities = 114/374 (30%), Positives = 178/374 (47%), Gaps = 53/374 (14%)
Query: 77 VEAKKIDRERKVVITDKGEVPYDKLVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKE 136
V A K D +V+ T +++ATGS+ + P G+ + + S +
Sbjct: 162 VTATKADGSTEVINTKN-------ILIATGSE--VTPFPGITIDEDTVVSSTGALSL--- 209
Query: 137 YIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNME 196
K+ P+K VVIGAG+IG+E + +LG +V VELL H+ +D +++ Q+ ++
Sbjct: 210 ---KKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVELLGHVGGIGIDMEVSKNFQRILQ 266
Query: 197 EHGVKFRFGVGV----SEIIGN---PVEAVKIGD-ETVEADLVLVATGVR---ANVDLAK 245
+ G KF+ V + GN +EA G E + D++LV G R N+ L +
Sbjct: 267 KQGFKFKLNTKVIGATKKSDGNIDVSIEAASGGKAEVITCDVLLVCIGRRPFTQNLGL-E 325
Query: 246 DAGLEVN-RG-IVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAE 303
+ G+E++ RG I VN QT P+IYAIG D V G L A + E
Sbjct: 326 ELGIELDPRGRIPVNTRFQTKIPNIYAIG------DVVAG----PMLAHKAEDEGIICVE 375
Query: 304 HIAGKDVKFRPVFNTAITELF-DLEIGTFGMTEERAKREGIDVVVGKF----RGSTKPEY 358
+AG V +N + ++ E+ G +EE+ K EGI+ VGKF K
Sbjct: 376 GMAGGAVHID--YNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNA 433
Query: 359 YPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALA-QMGAKVEDIAYLETAYA 417
G VK++ +K R++GA I+G G ++ +ALA + GA EDIA + A+
Sbjct: 434 DTDG---MVKILGQKSTDRVLGAHIIGPGA--GEMINEAALALEYGASCEDIARVCHAH- 487
Query: 418 PPISPTIDPITVAA 431
P +S +AA
Sbjct: 488 PTLSEAFREANLAA 501
>pir||JU0182 monodehydroascorbate reductase (NADH) (EC 1.6.5.4) - cucumber
>gi|452165|dbj|BAA05408.1| (D26392) monodehydroascorbate
reductase [Cucumis sativus]
Length = 434
Score = 100 bits (246), Expect = 4e-20
Identities = 98/365 (26%), Positives = 167/365 (44%), Gaps = 45/365 (12%)
Query: 2 RVVVIGSGTAGSNFAL-FLRKLDRKAEIIVIGKEPTMQY-------------SPCALP-- 45
+ V++G G A A F+++ E+ +I KE Y SP LP
Sbjct: 7 KYVILGGGVAAGYAAREFVKQGLNPGELAIISKEAVAPYERPALSKAYLFPESPARLPGF 66
Query: 46 HVISGTIEKPEDVIVFPNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGEV-PYDKLVLA 104
HV G+ + + P ++Y+++ I+++L E + D K + + G++ Y L++A
Sbjct: 67 HVCVGSGGER----LLP-DWYKEKGIELILSTEIVEADLPAKRLRSAHGKIYNYQTLIIA 121
Query: 105 TGS---KAFIPPIKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEA 161
TGS K ++G + + +F L+ +DD ++ E I + K VV+G G IGLE A
Sbjct: 122 TGSTVIKLSDFGVQGADAKNIFYLREIDDADQLVEAIKAKENGKVVVVGGGYIGLELGAA 181
Query: 162 FAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGV---KFRFGVGVSEIIGNPVEA 218
+V +V +P + ++A+ + + G+ K VG + V+
Sbjct: 182 LRINNFDVSMVYPEPWCMPRLFTPEIAAFYEGYYAQKGITIIKGTVAVGFTVDTNGEVKE 241
Query: 219 VKIGDETV-EADLVLVATGVRANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEV 277
VK+ D V EAD+V+V G R L K +E GI +E+ +TS PD+YA+GD A
Sbjct: 242 VKLKDGRVLEADIVVVGVGARPLTSLFKGQIVEEKGGIKTDEFFKTSVPDVYAVGDVATF 301
Query: 278 ----------IDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLE 327
++ V R ++ AV+ K + E A ++ + P F + FDL
Sbjct: 302 PLKLYNELRRVEHVDHSRKSAE---QAVKAIKASEEGKAIEEYDYLPYF---YSRSFDLS 355
Query: 328 IGTFG 332
+G
Sbjct: 356 WQFYG 360
>pir||B71705 dihydrolipoamide dehydrogenase precursor (pdhD) RP460 - Rickettsia
prowazekii >gi|3861016|emb|CAA14916.1| (AJ235271)
DIHYDROLIPOAMIDE DEHYDROGENASE PRECURSOR (pdhD)
[Rickettsia prowazekii]
Length = 453
Score = 99.8 bits (245), Expect = 5e-20
Identities = 102/369 (27%), Positives = 171/369 (45%), Gaps = 50/369 (13%)
Query: 68 KQKIKMMLGVEAKKIDRERKVVITDKGEVPYDKLVLATGSKAFIPPIKGVENEGVFTLKS 127
K KI + G EAK I +V +K ++ +++ TGS P ++ E F + S
Sbjct: 98 KNKITKIKG-EAKIISNN--IVEVNKEQIKAKNILITTGSSVIEIPNITIDEE--FIVSS 152
Query: 128 LDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDM 187
++ K PK +V+G G IGLE + +LG +V VVE ++P MLDK++
Sbjct: 153 TGALKLSKV------PKHLIVVGGGYIGLELGSVWRRLGAKVTVVEYASSIVP-MLDKEI 205
Query: 188 ASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKIG--------DETVEADLVLVATGVRA 239
A ++ G++F+ +++I + V++ K+ + +D+VL+A G +A
Sbjct: 206 AKQFMTIQQKQGIEFKLN---TKVIASEVKSGKVNLTIEEWDKRSIITSDVVLIAVGRKA 262
Query: 240 NVDLAKDAGLEV------NRG-IVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGT 292
K+ G E N+G I +NE QT+ +IYA+GD V+ +
Sbjct: 263 ---YTKNLGFESVGITTDNKGRIEINERFQTAVSNIYAVGD---VVKGAMLAHKAEEEAI 316
Query: 293 SAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDL-EIGTFGMTEERAKREGIDVVVGKFR 351
+AV + A H+ +N + ++ E+ + G TEE+ + +GI+ VGKF
Sbjct: 317 AAVEIMVGQAGHVN---------YNLIPSVIYTYPEVASVGATEEQLQEQGINYKVGKFP 367
Query: 352 GSTKPEYYP-GGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIA 410
G VK++ + R++GA I+G + I L A + GA EDIA
Sbjct: 368 FLANSRARAIGSTEGMVKILADSKTDRVLGAHIIGSD-AGTLIAELIAYMEFGASSEDIA 426
Query: 411 YLETAYAPP 419
T +A P
Sbjct: 427 --RTCHAHP 433
>sp|P49819|DLDH_CANFA DIHYDROLIPOAMIDE DEHYDROGENASE, MITOCHONDRIAL PRECURSOR
>gi|1363945|pir||JC4241 dihydrolipoamide dehydrogenase
(EC 1.8.1.4) precursor - dog >gi|642070|gb|AAA87174.1|
(U19872) dihydrolipoamide: NAD+ oxidoreductase [Canis
familiaris]
Length = 509
Score = 99.1 bits (243), Expect = 9e-20
Identities = 112/375 (29%), Positives = 175/375 (45%), Gaps = 55/375 (14%)
Query: 77 VEAKKIDRERKVVITDKGEVPYDKLVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKE 136
V AKK D +V+ T +++ATGS+ + P G+ + + S +
Sbjct: 162 VTAKKADGSTQVIDTKN-------ILIATGSE--VTPFPGITIDEDTIVSSTGALSL--- 209
Query: 137 YIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNME 196
K+ P+K VVIGAG+IG+E + +LG +V VE L H+ +D +++ Q+ ++
Sbjct: 210 ---KKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQ 266
Query: 197 EHGVKFRFGVGVSEI-------IGNPVEAVKIGD-ETVEADLVLVATGVR---ANVDLAK 245
+ G KF+ V+ I +E G E + D++LV G R N+ L +
Sbjct: 267 KQGFKFKLNTKVTGATKKSDGKIDVSIEGASGGKAEVITCDVLLVCIGRRPFTQNLGL-E 325
Query: 246 DAGLEVN-RG-IVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAE 303
+ G+E++ RG I VN QT P+IYAIG D V G L A + E
Sbjct: 326 ELGIELDPRGRIPVNTRFQTKIPNIYAIG------DVVAG----PMLAHKAEDEGIICVE 375
Query: 304 HIAGKDVKFRPVFNTAITELF--DLEIGTFGMTEERAKREGIDVVVGKF----RGSTKPE 357
+AG V P+ + + E+ G +EE+ K EGI+ VGKF K
Sbjct: 376 GMAGGAV---PIDYNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTN 432
Query: 358 YYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALA-QMGAKVEDIAYLETAY 416
G VK++ +K R++GA I+G G ++ +ALA + GA EDIA + A+
Sbjct: 433 ADTDG---MVKILGQKSTDRVLGAHILGPGA--GEMVNEAALALEYGASCEDIARVCHAH 487
Query: 417 APPISPTIDPITVAA 431
P +S +AA
Sbjct: 488 -PTLSEAFREANLAA 501
>gb|AAD53185.1|AF181096_1 (AF181096) ferric leghemoglobin reductase [Vigna unguiculata]
Length = 523
Score = 99.1 bits (243), Expect = 9e-20
Identities = 113/384 (29%), Positives = 178/384 (45%), Gaps = 46/384 (11%)
Query: 66 YEKQKIKMMLGVEAKKIDRERKVVITDKGE--VPYDKLVLATGSKAFIPPIKGVENEGVF 123
++K K+ + G E V D G V +++ATGS P ++ + +
Sbjct: 136 FKKNKVNYVKGYGKFVSPSEVSVDTIDGGNTVVKGKHIIIATGSDVKSLPGVTIDEKKIV 195
Query: 124 TLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTML 183
+ + I PKK VVIGAG IGLE + +LG EV VVE ++PTM
Sbjct: 196 SSTGALALTEI--------PKKLVVIGAGYIGLEMGSVWGRLGSEVTVVEFASDIVPTM- 246
Query: 184 DKDMASIVQKNMEEHGVKFRF-----GVGVS-EIIGNPVEAVKIGDETV-EADLVLVATG 236
D ++ Q+++E+ G+KF+ GV S + + +E GD+T+ E D+VLV+ G
Sbjct: 247 DAEVRKQFQRSLEKQGMKFQLKTKVVGVDTSGDGVKLTLEPAAGGDQTILETDVVLVSAG 306
Query: 237 ---VRANVDLAKDAGLEVN--RGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLG 291
A + L K G+E + R I+VNE T+ +YAIG D + G L
Sbjct: 307 RTPFTAGLGLDK-IGVETDKIRRILVNERFTTNVSGVYAIG------DVIPG----PMLA 355
Query: 292 TSAVRMAKVAAEHIAGK--DVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGK 349
A E IAGK V + V T E+ G TEE+ K G++ VGK
Sbjct: 356 HKAEEDGVACVEFIAGKVGHVDYDKVPGVVYT---TPEVAYVGKTEEQVKALGVEYRVGK 412
Query: 350 --FRGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALA-QMGAKV 406
F +++ + + + VK++ KE +++G I+ G ++ +A+A Q A
Sbjct: 413 FPFMANSRAKAIDNAEGL-VKILAEKETDKILGVHIMAPNA--GELIHEAAIALQYDASS 469
Query: 407 EDIAYLETAYAPPISPTIDPITVA 430
EDIA + A+ P +S + +A
Sbjct: 470 EDIARVCHAH-PTMSEAVKEAAMA 492
>pir||T48390 monodehydroascorbate reductase (NADH)-like protein - Arabidopsis
thaliana >gi|7340648|emb|CAB82928.1| (AL162506)
monodehydroascorbate reductase (NADH)-like protein
[Arabidopsis thaliana]
Length = 437
Score = 99.1 bits (243), Expect = 9e-20
Identities = 86/299 (28%), Positives = 137/299 (45%), Gaps = 29/299 (9%)
Query: 2 RVVVIGSGTAGSNFAL-FLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
+ V++G G A A F + + E+ +I +E Q P P + G I E+
Sbjct: 8 KYVIVGGGVAAGYAAREFFNQGVKPGELAIISRE---QVPPYERPALSKGYIHL-ENKAT 63
Query: 61 FPN--------------EFYEKQKIKMMLGVEAKKIDRERKVVITDKGEV-PYDKLVLAT 105
PN ++Y+++ I+++LG E K D K +++ G+V Y L+ AT
Sbjct: 64 LPNFYVAAGIGGERQFPQWYKEKGIELILGTEIVKADLAAKTLVSGTGQVFKYQTLLAAT 123
Query: 106 GSK-AFIPPIKG----VENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAE 160
GS + I P + + +F L+ L+D + + + KAVV+G G IGLE
Sbjct: 124 GSSVSTIYPCTSYFGSADAKNIFYLRELEDADYLAYAMETKEKGKAVVVGGGYIGLELGA 183
Query: 161 AFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP---VE 217
A ++V +V +P + +AS + G+ G S N V
Sbjct: 184 ALKANNLDVTMVYPEPWCMPRLFTAGIASFYEGYYANKGINIVKGTVASGFTTNSNGEVT 243
Query: 218 AVKIGD-ETVEADLVLVATGVRANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCA 275
VK+ D T+EAD+V+V G R + L KD E G+ + + +TS PD+YAIGD A
Sbjct: 244 EVKLKDGRTLEADIVIVGVGGRPIISLFKDQVEEEKGGLKTDGFFKTSLPDVYAIGDVA 302
>sp|P00391|DLDH_ECOLI DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONENT OF PYRUVATE AND
2-OXOGLUTARATE DEHYDROGENASES COMPLEXES) (GLYCINE
CLEAVAGE SYSTEM L PROTEIN) >gi|2144348|pir||DEECLP
dihydrolipoamide dehydrogenase (EC 1.8.1.4) -
Escherichia coli >gi|473785|dbj|BAA05574.1| (D26562)
'dihydrolipoamide dehydrogenase (E3 component of
pyruvate dehydrog enase complex)' [Escherichia coli]
>gi|1786307|gb|AAC73227.1| (AE000121) lipoamide
dehydrogenase (NADH); component of 2-oxodehydrogenase
and pyruvate complexes; L-protein of glycine cleavage
complex [Escherichia coli K12]
Length = 474
Score = 98.7 bits (242), Expect = 1e-19
Identities = 107/346 (30%), Positives = 158/346 (44%), Gaps = 51/346 (14%)
Query: 93 KGEVPYDKLVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAG 152
K + +D ++A GS+ P E+ ++ D +KE P++ +V+G G
Sbjct: 133 KTVINFDNAIIAAGSRPIQLPFIPHEDPRIW---DSTDALELKEV-----PERLLVMGGG 184
Query: 153 LIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEH-----GVKFRFGVG 207
+IGLE + LG ++ VVE+ + ++P DKD+ + K + + K
Sbjct: 185 IIGLEMGTVYHALGSQIDVVEMFDQVIPA-ADKDIVKVFTKRISKKFNLMLETKVTAVEA 243
Query: 208 VSEIIGNPVEAVKIGDETVEADLVLVATG---VRANVDLAKDAGLEV-NRGIV-VNEYLQ 262
+ I +E K E D VLVA G N+D K AG+EV +RG + V++ L+
Sbjct: 244 KEDGIYVTMEGKKAPAEPQRYDAVLVAIGRVPNGKNLDAGK-AGVEVDDRGFIRVDKQLR 302
Query: 263 TSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITE 322
T+ P I+AIGD + G+ L+ G V VAAE IAGK F P +I
Sbjct: 303 TNVPHIFAIGD-------IVGQPMLAHKG---VHEGHVAAEVIAGKKHYFDPKVIPSIA- 351
Query: 323 LFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGGKPIT-------VKLIFRKEE 375
+ E+ G+TE+ AK +GI F + G+ I KLIF KE
Sbjct: 352 YTEPEVAWVGLTEKEAKEKGISYETATF------PWAASGRAIASDCADGMTKLIFDKES 405
Query: 376 GRLIGAQIVG--GERVWGRIMTLSALAQMGAKVEDIAYLETAYAPP 419
R+IG IVG G + G I +MG EDIA T +A P
Sbjct: 406 HRVIGGAIVGTNGGELLGEI---GLAIEMGCDAEDIAL--TIHAHP 446
>emb|CAA24742.1| (V01498) coding sequence of gene lpd [Escherichia coli]
Length = 475
Score = 98.7 bits (242), Expect = 1e-19
Identities = 107/346 (30%), Positives = 158/346 (44%), Gaps = 51/346 (14%)
Query: 93 KGEVPYDKLVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAG 152
K + +D ++A GS+ P E+ ++ D +KE P++ +V+G G
Sbjct: 134 KTVINFDNAIIAAGSRPIQLPFIPHEDPRIW---DSTDALELKEV-----PERLLVMGGG 185
Query: 153 LIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEH-----GVKFRFGVG 207
+IGLE + LG ++ VVE+ + ++P DKD+ + K + + K
Sbjct: 186 IIGLEMGTVYHALGSQIDVVEMFDQVIPA-ADKDIVKVFTKRISKKFNLMLETKVTAVEA 244
Query: 208 VSEIIGNPVEAVKIGDETVEADLVLVATG---VRANVDLAKDAGLEV-NRGIV-VNEYLQ 262
+ I +E K E D VLVA G N+D K AG+EV +RG + V++ L+
Sbjct: 245 KEDGIYVTMEGKKAPAEPQRYDAVLVAIGRVPNGKNLDAGK-AGVEVDDRGFIRVDKQLR 303
Query: 263 TSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITE 322
T+ P I+AIGD + G+ L+ G V VAAE IAGK F P +I
Sbjct: 304 TNVPHIFAIGD-------IVGQPMLAHKG---VHEGHVAAEVIAGKKHYFDPKVIPSIA- 352
Query: 323 LFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGGKPIT-------VKLIFRKEE 375
+ E+ G+TE+ AK +GI F + G+ I KLIF KE
Sbjct: 353 YTEPEVAWVGLTEKEAKEKGISYETATF------PWAASGRAIASDCADGMTKLIFDKES 406
Query: 376 GRLIGAQIVG--GERVWGRIMTLSALAQMGAKVEDIAYLETAYAPP 419
R+IG IVG G + G I +MG EDIA T +A P
Sbjct: 407 HRVIGGAIVGTNGGELLGEI---GLAIEMGCDAEDIAL--TIHAHP 447
>pir||T36209 probable pyridine nucleotide-disulfide oxidoreductase (EC 1.-.-.-)
SCE36.10c [imported] - Streptomyces coelicolor
>gi|4757094|emb|CAB42079.1| (AL049763) putative pyridine
nucleotide-disulphide oxidoreductase [Streptomyces
coelicolor A3(2)]
Length = 454
Score = 97.9 bits (240), Expect = 2e-19
Identities = 87/311 (27%), Positives = 148/311 (46%), Gaps = 40/311 (12%)
Query: 101 LVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAE 160
+V+ATGS+ IPP+ G++ +T + V K +P+ +V+G G +G+E A+
Sbjct: 136 VVIATGSRPQIPPVPGLDAVPYWTNREAIAV--------KDSPRSLMVLGGGAVGVELAQ 187
Query: 161 AFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEI--IGNPVEA 218
AFA+ G V VVE E LLP + + ++++ + G+ R G + G+
Sbjct: 188 AFARFGTAVTVVEAAERLLPAE-EPETSALLADVLGAEGITVRTGAQANRARHDGDTFTL 246
Query: 219 VKIGDETVEADLVLVATGVRA--------NVDLAKDAGLEVNRGIVVNEYLQTSDPDIYA 270
G E + A+ +LVATG RA V L DA R + V+E L+ + P ++
Sbjct: 247 TLEGGEELTAERLLVATGRRAGLAGLGLGTVGLDPDA-----RALHVDEQLRAA-PGLWG 300
Query: 271 IGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGT 330
+GD VTG+ + + +A A G +R + T D E+G+
Sbjct: 301 VGD-------VTGRGAFTHVAMYQAEIAVRAILGQPGPGADYRALPRVTFT---DPEVGS 350
Query: 331 FGMTEERAKREGIDVVVG--KFRGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQI---VG 385
G+TE RA+ +G+ V G + S + + G +KL+ + G L+GA +G
Sbjct: 351 VGLTEARAREKGLRVRTGTAQVPSSARGWIHKAGNEGLIKLVEDVDRGVLVGATSAGPMG 410
Query: 386 GERVWGRIMTL 396
GE ++G ++ +
Sbjct: 411 GEVLYGLVVAV 421
>gi|4557525 dihydrolipoamide dehydrogenase precursor; E3 component of pyruvate
dehydrogenase [Homo sapiens]
>gi|118674|sp|P09622|DLDH_HUMAN DIHYDROLIPOAMIDE
DEHYDROGENASE, MITOCHONDRIAL PRECURSOR
>gi|66123|pir||DEHULP dihydrolipoamide dehydrogenase (EC
1.8.1.4) precursor - human >gi|307137|gb|AAA59527.1|
(J03490) lipoamide dehydrogenase precursor old gene name
'LAD' [Homo sapiens]
Length = 509
Score = 97.5 bits (239), Expect = 3e-19
Identities = 112/374 (29%), Positives = 176/374 (46%), Gaps = 53/374 (14%)
Query: 77 VEAKKIDRERKVVITDKGEVPYDKLVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKE 136
V A K D +V+ T +++ATGS+ + P G+ + + S +
Sbjct: 162 VTATKADGGTQVIDTKN-------ILIATGSE--VTPFPGITIDEDTIVSSTGALSL--- 209
Query: 137 YIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNME 196
K+ P+K VVIGAG+IG+E + +LG +V VE L H+ +D +++ Q+ ++
Sbjct: 210 ---KKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQ 266
Query: 197 EHGVKFRFGVGVSEI-------IGNPVEAVKIGD-ETVEADLVLVATGVR---ANVDLAK 245
+ G KF+ V+ I +EA G E + D++LV G R N+ L +
Sbjct: 267 KQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGL-E 325
Query: 246 DAGLEVN-RG-IVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAE 303
+ G+E++ RG I VN QT P+IYAIG D V G L A + E
Sbjct: 326 ELGIELDPRGRIPVNTRFQTKIPNIYAIG------DVVAG----PMLAHKAEDEGIICVE 375
Query: 304 HIAGKDVKFRPVFNTAITELF-DLEIGTFGMTEERAKREGIDVVVGKF----RGSTKPEY 358
+AG V +N + ++ E+ G +EE+ K EGI+ VGKF K
Sbjct: 376 GMAGGAVHID--YNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNA 433
Query: 359 YPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALA-QMGAKVEDIAYLETAYA 417
G VK++ +K R++GA I+G G ++ +ALA + GA EDIA + A+
Sbjct: 434 DTDG---MVKILGQKSTDRVLGAHILGPGA--GEMVNEAALALEYGASCEDIARVCHAH- 487
Query: 418 PPISPTIDPITVAA 431
P +S +AA
Sbjct: 488 PTLSEAFREANLAA 501
>gb|AAA35764.1| (J03620) dihydrolipoamide dehydrogenase precursor [Homo sapiens]
Length = 509
Score = 97.5 bits (239), Expect = 3e-19
Identities = 113/375 (30%), Positives = 178/375 (47%), Gaps = 50/375 (13%)
Query: 80 KKIDRERKVVIT--DKGEVPYD--KLVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIK 135
+KI + +V T D G D +++ATGS+ + P G+ + + S +
Sbjct: 154 RKITGKNQVTATKADGGTQVIDTKNILIATGSE--VTPFPGITIDEDTIVSSTGALSL-- 209
Query: 136 EYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNM 195
K+ P+K VVIGAG+IG+E + +LG +V VE L H+ +D +++ Q+ +
Sbjct: 210 ----KKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRIL 265
Query: 196 EEHGVKFRFGVGVSEI-------IGNPVEAVKIGD-ETVEADLVLVATGVR---ANVDLA 244
++ G KF+ V+ I +EA G E + D++LV G R N+ L
Sbjct: 266 QKQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGL- 324
Query: 245 KDAGLEVN-RG-IVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAA 302
++ G+E++ RG I VN QT P+IYAIG D V G L A +
Sbjct: 325 EELGIELDPRGRIPVNTRFQTKIPNIYAIG------DVVAG----PMLAHKAEDEGIICV 374
Query: 303 EHIAGKDVKFRPVFNTAITELF-DLEIGTFGMTEERAKREGIDVVVGKF----RGSTKPE 357
E +AG V +N + ++ E+ G +EE+ K EGI+ VGKF K
Sbjct: 375 EGMAGGAVHID--YNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTN 432
Query: 358 YYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALA-QMGAKVEDIAYLETAY 416
G VK++ +K R++GA I+G G ++ +ALA + GA EDIA + A+
Sbjct: 433 ADTDG---MVKILGQKSTDRVLGAHILGPGA--GEMVNEAALALEYGASCEDIARVCHAH 487
Query: 417 APPISPTIDPITVAA 431
P +S +AA
Sbjct: 488 -PTLSEAFREANLAA 501
>sp|P18925|DLDH_AZOVI DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONENT OF PYRUVATE COMPLEX)
>gi|66125|pir||DEAVHL dihydrolipoamide dehydrogenase (EC
1.8.1.4) - Azotobacter vinelandii
>gi|142325|gb|AAA22139.1| (M37307) lipoamide
dehydrogenase [Azotobacter vinelandii]
Length = 477
Score = 96.7 bits (237), Expect = 4e-19
Identities = 99/343 (28%), Positives = 157/343 (44%), Gaps = 34/343 (9%)
Query: 99 DKLVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEG 158
+ ++LA+GSK P V+ + + D + + P K VIGAG+IGLE
Sbjct: 145 ENVILASGSKPVEIPPAPVDQDVIVDSTGALDFQNV--------PGKLGVIGAGVIGLEL 196
Query: 159 AEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEI-IGNPVE 217
+A+LG EV V+E ++ LP +D+ +A QK + + G+K G V+ + N
Sbjct: 197 GSVWARLGAEVTVLEAMDKFLPA-VDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQV 255
Query: 218 AVKI----GDETVEADLVLVATGVRANVD--LAKDAGLEVN-RG-IVVNEYLQTSDPDIY 269
VK G+++ D ++VA G R LA D+G+ ++ RG I V++Y TS P +Y
Sbjct: 256 TVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVY 315
Query: 270 AIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIG 329
AIG D V G + L A V AE IAG + A+ EI
Sbjct: 316 AIG------DVVRG----AMLAHKASEEGVVVAERIAGHKAQMNYDLIPAVIYTHP-EIA 364
Query: 330 TFGMTEERAKREGIDVVVGKFRGSTKPEYYPGGKPI-TVKLIFRKEEGRLIGAQIVGGER 388
G TE+ K EG+ + VG F + VK+I + R++G ++G
Sbjct: 365 GVGKTEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSA 424
Query: 389 VWGRIMTLSALA-QMGAKVEDIAYLETAYAPPISPTIDPITVA 430
++ A+A + G ED+ + A+ P +S + +A
Sbjct: 425 --AELVQQGAIAMEFGTSAEDLGMMVFAH-PALSEALHEAALA 464
>pdb|3LAD|A Chain A, Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4)
>gi|494879|pdb|3LAD|B Chain B, Dihydrolipoamide
Dehydrogenase (E.C.1.8.1.4)
Length = 476
Score = 96.7 bits (237), Expect = 4e-19
Identities = 99/343 (28%), Positives = 157/343 (44%), Gaps = 34/343 (9%)
Query: 99 DKLVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEG 158
+ ++LA+GSK P V+ + + D + + P K VIGAG+IGLE
Sbjct: 144 ENVILASGSKPVEIPPAPVDQDVIVDSTGALDFQNV--------PGKLGVIGAGVIGLEL 195
Query: 159 AEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEI-IGNPVE 217
+A+LG EV V+E ++ LP +D+ +A QK + + G+K G V+ + N
Sbjct: 196 GSVWARLGAEVTVLEAMDKFLPA-VDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQV 254
Query: 218 AVKI----GDETVEADLVLVATGVRANVD--LAKDAGLEVN-RG-IVVNEYLQTSDPDIY 269
VK G+++ D ++VA G R LA D+G+ ++ RG I V++Y TS P +Y
Sbjct: 255 TVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYCATSVPGVY 314
Query: 270 AIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIG 329
AIG D V G + L A V AE IAG + A+ EI
Sbjct: 315 AIG------DVVRG----AMLAHKASEEGVVVAERIAGHKAQMNYDLIPAVIYTHP-EIA 363
Query: 330 TFGMTEERAKREGIDVVVGKFRGSTKPEYYPGGKPI-TVKLIFRKEEGRLIGAQIVGGER 388
G TE+ K EG+ + VG F + VK+I + R++G ++G
Sbjct: 364 GVGKTEQALKAEGVAINVGVFPFAASGRAMAANDTAGFVKVIADAKTDRVLGVHVIGPSA 423
Query: 389 VWGRIMTLSALA-QMGAKVEDIAYLETAYAPPISPTIDPITVA 430
++ A+A + G ED+ + A+ P +S + +A
Sbjct: 424 --AELVQQGAIAMEFGTSAEDLGMMVFAH-PALSEALHEAALA 463
>emb|CAA11554.1| (AJ223804) 2-oxoglutarate dehydrogenase, E3 subunit [Arabidopsis
thaliana]
Length = 472
Score = 96.7 bits (237), Expect = 4e-19
Identities = 114/395 (28%), Positives = 182/395 (45%), Gaps = 68/395 (17%)
Query: 66 YEKQKIKMMLG---------VEAKKIDRERKVVITDKGEVPYDKLVLATGSKAFIPPIKG 116
++K K+ + G V ID E VV KG+ +++ATGS P
Sbjct: 108 FKKNKVNYVKGYGKFLSPSEVSVDTIDGENVVV---KGK----HIIVATGSDVKSLPGIT 160
Query: 117 VENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLE 176
++ + + + + I PKK +VIGAG IGLE + +LG EV VVE
Sbjct: 161 IDEKKIVSSTGALSLTEI--------PKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAA 212
Query: 177 HLLPTMLDKDMASIVQKNMEEHGVKFRFG---VGVS------EIIGNPVEAVKIGDETVE 227
++P M D ++ Q+++E+ +KF VGV ++I P E + T+E
Sbjct: 213 DIVPAM-DGEIRKQFQRSLEKQKMKFMLKTKVVGVDSSGDGVKLIVEPAEGGE--QTTLE 269
Query: 228 ADLVLVATG---VRANVDLAKDAGLEVNRG--IVVNEYLQTSDPDIYAIGDCAEVIDAVT 282
AD+VLV+ G + +DL K G+E ++G I+VNE T+ +YAIG D +
Sbjct: 270 ADVVLVSAGRTPFTSGLDLEK-IGVETDKGGRILVNERFSTNVSGVYAIG------DVIP 322
Query: 283 GKRTLSQLGTSAVRMAKVAAEHIAGK--DVKFRPVFNTAITELFDLEIGTFGMTEERAKR 340
G L A E IAGK V + V T E+ + G TEE+ K+
Sbjct: 323 G----PMLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTY---PEVASVGKTEEQLKK 375
Query: 341 EGIDVVVGK--FRGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIV---GGERVWGRIMT 395
EG+ VGK F +++ + + + VK++ KE +++G I+ GE + ++
Sbjct: 376 EGVSYNVGKFPFMANSRAKAIDTAEGM-VKILADKETDKILGVHIMSPNAGELIHEAVLA 434
Query: 396 LSALAQMGAKVEDIAYLETAYAPPISPTIDPITVA 430
++ A EDIA + A+ P +S I +A
Sbjct: 435 IN----YDASSEDIARVCHAH-PTMSEAIKEAAMA 464
>gb|AAF34796.1|AF228640_1 (AF228640) lipoamide dehydrogenase precursor [Arabidopsis thaliana]
Length = 507
Score = 96.7 bits (237), Expect = 4e-19
Identities = 114/395 (28%), Positives = 182/395 (45%), Gaps = 68/395 (17%)
Query: 66 YEKQKIKMMLG---------VEAKKIDRERKVVITDKGEVPYDKLVLATGSKAFIPPIKG 116
++K K+ + G V ID E VV KG+ +++ATGS P
Sbjct: 143 FKKNKVNYVKGYGKFLSPSEVSVDTIDGENVVV---KGK----HIIVATGSDVKSLPGIT 195
Query: 117 VENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLE 176
++ + + + + I PKK +VIGAG IGLE + +LG EV VVE
Sbjct: 196 IDEKKIVSSTGALSLTEI--------PKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAA 247
Query: 177 HLLPTMLDKDMASIVQKNMEEHGVKFRFG---VGVS------EIIGNPVEAVKIGDETVE 227
++P M D ++ Q+++E+ +KF VGV ++I P E + T+E
Sbjct: 248 DIVPAM-DGEIRKQFQRSLEKQKMKFMLKTKVVGVDSSGDGVKLIVEPAEGGE--QTTLE 304
Query: 228 ADLVLVATG---VRANVDLAKDAGLEVNRG--IVVNEYLQTSDPDIYAIGDCAEVIDAVT 282
AD+VLV+ G + +DL K G+E ++G I+VNE T+ +YAIG D +
Sbjct: 305 ADVVLVSAGRTPFTSGLDLEK-IGVETDKGGRILVNERFSTNVSGVYAIG------DVIP 357
Query: 283 GKRTLSQLGTSAVRMAKVAAEHIAGK--DVKFRPVFNTAITELFDLEIGTFGMTEERAKR 340
G L A E IAGK V + V T E+ + G TEE+ K+
Sbjct: 358 G----PMLAHKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTY---PEVASVGKTEEQLKK 410
Query: 341 EGIDVVVGK--FRGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIV---GGERVWGRIMT 395
EG+ VGK F +++ + + + VK++ KE +++G I+ GE + ++
Sbjct: 411 EGVSYNVGKFPFMANSRAKAIDTAEGM-VKILADKETDKILGVHIMSPNAGELIHEAVLA 469
Query: 396 LSALAQMGAKVEDIAYLETAYAPPISPTIDPITVA 430
++ A EDIA + A+ P +S I +A
Sbjct: 470 IN----YDASSEDIARVCHAH-PTMSEAIKEAAMA 499
>pir||A82753 dihydrolipoamide dehydrogenase XF0868 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9105778|gb|AAF83678.1|AE003926_7 (AE003926)
dihydrolipoamide dehydrogenase [Xylella fastidiosa]
Length = 603
Score = 96.7 bits (237), Expect = 4e-19
Identities = 92/302 (30%), Positives = 149/302 (48%), Gaps = 34/302 (11%)
Query: 143 PKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKF 202
PKK +V+G G+IGLE A + LG V +VE ++ ++P DKD+ + M++ G++
Sbjct: 291 PKKLLVVGGGIIGLEMATVYNALGSHVTIVEFMDQIIPG-TDKDLVKPLADRMKKQGIEI 349
Query: 203 RFGVGVSEIIGN----------PVEAVKIGDETVEADLVLVATG--VRANVDLAKDAGLE 250
S + + P + + +T D VLVA G N A+ AG+
Sbjct: 350 HLNTKASHVKADKKGITVSFEAPTQGTQPALKTSTYDRVLVAVGRTPTGNNIGAEKAGVN 409
Query: 251 V-NRGIV-VNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAK--VAAEHIA 306
V RG + V+ ++++ P I+AIGD + G L+ T ++A AAE +
Sbjct: 410 VTERGFIPVDRQMRSNVPHIFAIGD-------IVGNPMLAHKATHEGKLAAEVAAAETES 462
Query: 307 GKDVKF--RPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGGKP 364
GK ++ R + + A T + EI GMTE AK + +++ V KF + G+
Sbjct: 463 GKHREWVARVIPSVAYT---NPEIAWIGMTETEAKAKSLNIGVAKFPWAASGRAIGIGRT 519
Query: 365 I-TVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALA-QMGAKVEDIAYLETAYAPPISP 422
KLIF ++ R+IG IVG G ++ LA +MGA+ EDI++ A+ P +S
Sbjct: 520 EGFTKLIFDEDTHRIIGGAIVGVHA--GDLLAEIGLAIEMGAEAEDISHTIHAH-PTLSE 576
Query: 423 TI 424
+I
Sbjct: 577 SI 578
>gb|AAB01381.1| (L13761) dihydrolipoamide dehydrogenase [Homo sapiens]
Length = 511
Score = 96.3 bits (236), Expect = 6e-19
Identities = 107/353 (30%), Positives = 167/353 (46%), Gaps = 52/353 (14%)
Query: 77 VEAKKIDRERKVVITDKGEVPYDKLVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKE 136
V A K D +V+ T +++ATGS+ + P G+ + + S +
Sbjct: 162 VTATKADGGTQVIDTKN-------ILIATGSE--VTPFPGITIDEDTIVSSTGALSL--- 209
Query: 137 YIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNME 196
K+ P+K VVIGAG+IG+E + +LG +V VE L H+ +D +++ Q+ ++
Sbjct: 210 ---KKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQ 266
Query: 197 EHGVKFRFGVGVSEI-------IGNPVEAVKIGD-ETVEADLVLVATGVR---ANVDLAK 245
+ G KF+ V+ I +EA G E + D++LV G R N+ L +
Sbjct: 267 KQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGL-E 325
Query: 246 DAGLEVN-RG-IVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAE 303
+ G+E++ RG I VN QT P+IYAIG D V G L A + E
Sbjct: 326 ELGIELDPRGRIPVNTRFQTKIPNIYAIG------DVVAG----PMLAHKAEDEGIICVE 375
Query: 304 HIAGKDVKFRPVFNTAITELF-DLEIGTFGMTEERAKREGIDVVVGKF----RGSTKPEY 358
+AG V +N + ++ E+ G +EE+ K EGI+ VGKF K
Sbjct: 376 GMAGGAVHID--YNCVPSVIYTHPEVAWVGKSEEQLKEEGIEYKVGKFPFAANSRAKTNA 433
Query: 359 YPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALA-QMGAKVEDIA 410
G VK++ +K R++GA I+G G ++ +ALA + GA EDIA
Sbjct: 434 DTDG---MVKILGQKSTDRVLGAHILGPGA--GEMVNEAALALEYGASCEDIA 481
>sp|P08663|MERA_STAAU MERCURIC REDUCTASE (HG(II) REDUCTASE) >gi|79885|pir||E29504
mercury(II) reductase (EC 1.16.1.1) - Staphylococcus
aureus plasmid pI258 >gi|459907|gb|AAA98245.1| (L29436)
mercuric reductase [Plasmid pI258]
Length = 547
Score = 96.0 bits (235), Expect = 8e-19
Identities = 97/360 (26%), Positives = 156/360 (42%), Gaps = 53/360 (14%)
Query: 78 EAKKIDRERKVVITDKGEVPYDKLVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKEY 137
EA ID K + + + ++ATG+ +P I G+ T S +++ +
Sbjct: 195 EASFIDD--KTIQVNGQNITSKSFLIATGASPAVPEIPGMNEVDYLTSTSALELKEV--- 249
Query: 138 IGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEE 197
P++ VIG+G I E + F LG EV +++ E L T D +++ + +++ E
Sbjct: 250 -----PQRLAVIGSGYIAAELGQMFHNLGTEVTLMQRSERLFKTY-DPEISEAIDESLTE 303
Query: 198 HGVKFRFGVGVSEIIGNPVEA-----VKIGDETVEADLVLVATGVRANVDLA--KDAGLE 250
G+ GV ++ N V ++ +EAD VLVATG + N + + AG++
Sbjct: 304 QGLNLITGVTYQKVEQNGKSTSIYIEVNGQEQVIEADQVLVATGRKPNTETLNLESAGVK 363
Query: 251 VNRG--IVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGK 308
+ ++ NEYLQTS+ IYA GD LG V +A +A
Sbjct: 364 TGKKGEVLTNEYLQTSNNRIYAAGDVT--------------LGPQFVYVAAYEGGIVANN 409
Query: 309 ---------DVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYY 359
D++F P +T + I T G+TE++AK +G DV P
Sbjct: 410 ALGLAKRKIDLRFVP----GVT-FTNPSIATVGLTEQQAKEKGYDVKTSVLPLDAVPRAL 464
Query: 360 PGGKPITV-KLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYLETAYAP 418
+ V KL+ + +LIGA IV E I + Q G +ED L ++AP
Sbjct: 465 VNHETTGVYKLVVNAQTQKLIGAHIV-SENAGDVIYAATLAVQFGLTIED---LTDSFAP 520
>gi|6681189 dihydrolipoamide dehydrogenase [Mus musculus]
>gi|6014973|sp|O08749|DLDH_MOUSE DIHYDROLIPOAMIDE
DEHYDROGENASE, MITOCHONDRIAL PRECURSOR
>gi|2078522|gb|AAC53170.1| (U73445) dihydrolipoamide
dehydrogenase [Mus musculus]
Length = 509
Score = 96.0 bits (235), Expect = 8e-19
Identities = 111/374 (29%), Positives = 174/374 (45%), Gaps = 53/374 (14%)
Query: 77 VEAKKIDRERKVVITDKGEVPYDKLVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKE 136
V A K D +V+ T +++ATGS+ + P G+ + + S +
Sbjct: 162 VTATKADGSTQVIDTKN-------ILVATGSE--VTPFPGITIDEDTIVSSTGALSL--- 209
Query: 137 YIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNME 196
K+ P+K VVIGAG+IG+E + +LG +V VE L H+ +D +++ Q+ ++
Sbjct: 210 ---KKVPEKLVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGIGIDMEISKNFQRILQ 266
Query: 197 EHGVKFRFGVGVSEI-------IGNPVEAVKIGD-ETVEADLVLVATGVR---ANVDLAK 245
G KF+ V+ I VEA G E + D++LV G R N+ L +
Sbjct: 267 RQGFKFKLNTKVTGATKKSDGKIDVSVEAASGGKAEVITCDVLLVCIGRRPFTQNLGL-E 325
Query: 246 DAGLEVN-RG-IVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAE 303
+ G+E++ +G I VN QT P+IYAIG D V G L A + E
Sbjct: 326 ELGIELDPKGRIPVNNRFQTKIPNIYAIG------DVVAG----PMLAHKAEDEGIICVE 375
Query: 304 HIAGKDVKFRPVFNTAITELF-DLEIGTFGMTEERAKREGIDVVVGKF----RGSTKPEY 358
+AG V +N + ++ E+ G +EE+ K EGI+ +GKF K
Sbjct: 376 GMAGGAVHID--YNCVPSVIYTHPEVAWVGKSEEQLKEEGIEFKIGKFPFAANSRAKTNA 433
Query: 359 YPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALA-QMGAKVEDIAYLETAYA 417
G VK++ K R++GA I+G G ++ +ALA + GA EDIA + A+
Sbjct: 434 DTDG---MVKILGHKSTDRVLGAHILGPGA--GEMVNEAALALEYGASCEDIARVCHAH- 487
Query: 418 PPISPTIDPITVAA 431
P +S +AA
Sbjct: 488 PTLSEAFREANLAA 501
>pir||C59237 pyruvate dehydrogenase (EC 1.2.-.-) dihydrolipoyl
transacetylase/lipoamide dehydrogenase chain [imported]
- Thiobacillus ferrooxidans >gi|1750280|gb|AAB41628.1|
(U81808) dihydrolipoyl transacetylase and lipoamide
dehydrogenase of the pyruvate dehydrogenase complex
[Acidithiobacillus ferrooxidans]
Length = 978
Score = 95.6 bits (234), Expect = 1e-18
Identities = 100/334 (29%), Positives = 157/334 (46%), Gaps = 35/334 (10%)
Query: 92 DKGEVPYDKLVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGA 151
D + + V+ATG+ AF+PPI G+++ LKS V + K+ P + VIGA
Sbjct: 634 DARTLTFGACVIATGAPAFVPPIPGIQD----ALKSGAAVTSDTVWNLKQPPARLCVIGA 689
Query: 152 GLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRF--GVGVS 209
G IG+E A+ F G EV V+E L + M +K++A + K + + ++ + GV V+
Sbjct: 690 GAIGMEMAQMFHDFGAEVRVLEALPRPVAEM-EKEVAEQLMKAIAHNSLRLQVLTGVKVT 748
Query: 210 EIIG--NPV-EAVKIGDETVE--ADLVLVATGVRANVDLAKDAGLEVNRG----IVVNEY 260
E+ G PV A++ GDE DL+LVATG R + A V G I V+
Sbjct: 749 EVAGATRPVGGALQSGDEAANYACDLLLVATGKRPDTSGLNLAAAGVALGDRAVIAVDAS 808
Query: 261 LQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAI 320
+T+ P IYA+GD VI T Q G +VAA + G ++ + +
Sbjct: 809 GRTNVPHIYAVGD---VIGGYMLAHTAGQQG-------RVAAASLLGHSARYEAAKDCGV 858
Query: 321 TELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGGKPI-TVKLIFRKEEGRLI 379
T + G++ E+A+ EGID V K S + G+ +K++ K R++
Sbjct: 859 T-FTRPQCAFVGLSLEQARAEGIDAVEVKVPLSIDAKAMMTGETDGLIKIVADKISHRIV 917
Query: 380 GAQIVGGER---VWGRIMTLSALAQMGAKVEDIA 410
G + V +M +SA G +E +A
Sbjct: 918 GVHFLADHADTLVGEAVMMVSA----GLTLEQVA 947
>gb|AAF34795.1|AF228639_1 (AF228639) lipoamide dehydrogenase precursor [Arabidopsis thaliana]
Length = 497
Score = 95.6 bits (234), Expect = 1e-18
Identities = 105/386 (27%), Positives = 180/386 (46%), Gaps = 50/386 (12%)
Query: 66 YEKQKIKMMLGVEAKKIDRERKVVITDKGE--VPYDKLVLATGSKAFIPPIKGVENEGVF 123
++K K+ + G E V D G V +++ATGS P ++ + +
Sbjct: 133 FKKNKVTYVKGYGKFISPNEVSVETIDGGNTIVKGKHIIVATGSDVKSLPGITIDEKKIV 192
Query: 124 TLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTML 183
+ + + PKK +VIGAG IGLE + +LG EV VVE ++P+M
Sbjct: 193 SSTGALSLSEV--------PKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAGDIVPSM- 243
Query: 184 DKDMASIVQKNMEEHGVKFRFGVGV------SEIIGNPVEAVKIGDETV-EADLVLVATG 236
D ++ Q+++E+ +KF V S+ + VE + G++++ EAD+VLV+ G
Sbjct: 244 DGEIRKQFQRSLEKQKMKFMLKTKVVSVDSSSDGVKLTVEPAEGGEQSILEADVVLVSAG 303
Query: 237 ---VRANVDLAKDAGLEVNRG--IVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLG 291
+ +DL K G+E ++ I+VN+ ++ P +YAIG D + G L
Sbjct: 304 RTPFTSGLDLEK-IGVETDKAGRILVNDRFLSNVPGVYAIG------DVIPG----PMLA 352
Query: 292 TSAVRMAKVAAEHIAGK--DVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGK 349
A E IAGK V + V T E+ + G TEE+ K+EG+ VGK
Sbjct: 353 HKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTH---PEVASVGKTEEQLKKEGVSYRVGK 409
Query: 350 --FRGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIV---GGERVWGRIMTLSALAQMGA 404
F +++ + + + VK++ KE +++G I+ GE + ++ ++ A
Sbjct: 410 FPFMANSRAKAIDNAEGL-VKILADKETDKILGVHIMAPNAGELIHEAVLAIN----YDA 464
Query: 405 KVEDIAYLETAYAPPISPTIDPITVA 430
EDIA + A+ P +S + +A
Sbjct: 465 SSEDIARVCHAH-PTMSEALKEAAMA 489
>gb|AAF79529.1|AC023673_17 (AC023673) F21D18.28 [Arabidopsis thaliana]
Length = 505
Score = 95.6 bits (234), Expect = 1e-18
Identities = 105/386 (27%), Positives = 180/386 (46%), Gaps = 50/386 (12%)
Query: 66 YEKQKIKMMLGVEAKKIDRERKVVITDKGE--VPYDKLVLATGSKAFIPPIKGVENEGVF 123
++K K+ + G E V D G V +++ATGS P ++ + +
Sbjct: 141 FKKNKVTYVKGYGKFISPNEVSVETIDGGNTIVKGKHIIVATGSDVKSLPGITIDEKKIV 200
Query: 124 TLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTML 183
+ + + PKK +VIGAG IGLE + +LG EV VVE ++P+M
Sbjct: 201 SSTGALSLSEV--------PKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAGDIVPSM- 251
Query: 184 DKDMASIVQKNMEEHGVKFRFGVGV------SEIIGNPVEAVKIGDETV-EADLVLVATG 236
D ++ Q+++E+ +KF V S+ + VE + G++++ EAD+VLV+ G
Sbjct: 252 DGEIRKQFQRSLEKQKMKFMLKTKVVSVDSSSDGVKLTVEPAEGGEQSILEADVVLVSAG 311
Query: 237 ---VRANVDLAKDAGLEVNRG--IVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLG 291
+ +DL K G+E ++ I+VN+ ++ P +YAIG D + G L
Sbjct: 312 RTPFTSGLDLEK-IGVETDKAGRILVNDRFLSNVPGVYAIG------DVIPG----PMLA 360
Query: 292 TSAVRMAKVAAEHIAGK--DVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGK 349
A E IAGK V + V T E+ + G TEE+ K+EG+ VGK
Sbjct: 361 HKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTH---PEVASVGKTEEQLKKEGVSYRVGK 417
Query: 350 --FRGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIV---GGERVWGRIMTLSALAQMGA 404
F +++ + + + VK++ KE +++G I+ GE + ++ ++ A
Sbjct: 418 FPFMANSRAKAIDNAEGL-VKILADKETDKILGVHIMAPNAGELIHEAVLAIN----YDA 472
Query: 405 KVEDIAYLETAYAPPISPTIDPITVA 430
EDIA + A+ P +S + +A
Sbjct: 473 SSEDIARVCHAH-PTMSEALKEAAMA 497
>gb|AAG21579.1|AC051631_2 (AC051631) lipoamide dehydrogenase, putative; 44693-46402
[Arabidopsis thaliana]
Length = 507
Score = 95.6 bits (234), Expect = 1e-18
Identities = 105/386 (27%), Positives = 180/386 (46%), Gaps = 50/386 (12%)
Query: 66 YEKQKIKMMLGVEAKKIDRERKVVITDKGE--VPYDKLVLATGSKAFIPPIKGVENEGVF 123
++K K+ + G E V D G V +++ATGS P ++ + +
Sbjct: 143 FKKNKVTYVKGYGKFISPNEVSVETIDGGNTIVKGKHIIVATGSDVKSLPGITIDEKKIV 202
Query: 124 TLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTML 183
+ + + PKK +VIGAG IGLE + +LG EV VVE ++P+M
Sbjct: 203 SSTGALSLSEV--------PKKLIVIGAGYIGLEMGSVWGRLGSEVTVVEFAGDIVPSM- 253
Query: 184 DKDMASIVQKNMEEHGVKFRFGVGV------SEIIGNPVEAVKIGDETV-EADLVLVATG 236
D ++ Q+++E+ +KF V S+ + VE + G++++ EAD+VLV+ G
Sbjct: 254 DGEIRKQFQRSLEKQKMKFMLKTKVVSVDSSSDGVKLTVEPAEGGEQSILEADVVLVSAG 313
Query: 237 ---VRANVDLAKDAGLEVNRG--IVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLG 291
+ +DL K G+E ++ I+VN+ ++ P +YAIG D + G L
Sbjct: 314 RTPFTSGLDLEK-IGVETDKAGRILVNDRFLSNVPGVYAIG------DVIPG----PMLA 362
Query: 292 TSAVRMAKVAAEHIAGK--DVKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGK 349
A E IAGK V + V T E+ + G TEE+ K+EG+ VGK
Sbjct: 363 HKAEEDGVACVEFIAGKHGHVDYDKVPGVVYTH---PEVASVGKTEEQLKKEGVSYRVGK 419
Query: 350 --FRGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIV---GGERVWGRIMTLSALAQMGA 404
F +++ + + + VK++ KE +++G I+ GE + ++ ++ A
Sbjct: 420 FPFMANSRAKAIDNAEGL-VKILADKETDKILGVHIMAPNAGELIHEAVLAIN----YDA 474
Query: 405 KVEDIAYLETAYAPPISPTIDPITVA 430
EDIA + A+ P +S + +A
Sbjct: 475 SSEDIARVCHAH-PTMSEALKEAAMA 499
>gb|AAF04429.1|AC010927_22 (AC010927) putative monodehydroascorbate reductase (NADH)
[Arabidopsis thaliana]
Length = 441
Score = 95.2 bits (233), Expect = 1e-18
Identities = 96/344 (27%), Positives = 157/344 (44%), Gaps = 35/344 (10%)
Query: 2 RVVVIGSGTAGSNFAL-FLRKLDRKAEIIVIGKEPTMQYSPCALP--------------- 45
+ V+IG G AG A F + + E+ +I KEP + L
Sbjct: 8 KYVIIGGGVAGGYAAREFSNQGLKPGELAIISKEPVPPFERPELTKVYIDLEVNPTLANI 67
Query: 46 HVISGTIEKPEDVIVFPNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGEV-PYDKLVLA 104
+V +GT E + +PN +Y+++ I +++G E K D K +++D G++ Y L++A
Sbjct: 68 YVCAGTGEAKQ----YPN-WYKEKGIDLIVGTEIVKADLASKTLVSDDGKIYKYQTLLIA 122
Query: 105 TGSKAFIPPIKGVEN---EGVFTLKSLDDVRRIK---EYIGKRNPKKAVVIGAGLIGLEG 158
TGS GV+ + +F L+ ++D + E +R KAV+IG G +GLE
Sbjct: 123 TGSTNIRLSEIGVQEADVKNIFYLREIEDSDELALAMELYVQRG--KAVIIGGGFLGLEI 180
Query: 159 AEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGV---GVSEIIGNP 215
+ A EV +V L+ ++AS + G+K G G S
Sbjct: 181 SSALRANNHEVTMVFPEPWLVHRFFTAEIASFYESYYANKGIKIIKGTVATGFSTNSDGE 240
Query: 216 VEAVKIGD-ETVEADLVLVATGVRANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDC 274
V VK+ D T+EA++V+ G R L K E GI + + +TS PD+YA+GD
Sbjct: 241 VTEVKLEDGRTLEANIVVAGVGARPATSLFKGQLEEEKGGIKTDGFFKTSVPDVYALGDV 300
Query: 275 AEVIDAVTGKRTLSQLGTSAVRMAKVAAEHI-AGKDVKFRPVFN 317
A + G + +A + A A + I AG++ K P ++
Sbjct: 301 ATFPMKMYGGTRRVEHADNARKSAAQAVKAIKAGEEGKTIPDYD 344
>pir||F36953 dihydrolipoamide dehydrogenase (EC 1.8.1.4) - Pelobacter
carbinolicus >gi|434027|gb|AAA18919.1| (U01100)
dihydrolipoamide dehydrogenase [Pelobacter carbinolicus]
>gi|1220439|gb|AAA91879.1| (L24124) dihydrolipoamide
dehydrogenase [Pelobacter carbinolicus]
Length = 470
Score = 94.8 bits (232), Expect = 2e-18
Identities = 108/369 (29%), Positives = 168/369 (45%), Gaps = 44/369 (11%)
Query: 83 DRERKVVITDK--GEVPYDKLVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKEYIGK 140
D ++V +T K G V ++LATG K P V+N+ + + ++ E++
Sbjct: 125 DGLQQVEVTGKNAGVVKGKNVLLATGGKVAQVPGITVDNDVIIDNVGALSIDKVPEHL-- 182
Query: 141 RNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGV 200
++IGAG IGLE + +LG +V VVE+L +LP D D +Q+++++ G+
Sbjct: 183 ------MIIGAGYIGLELGSVWLRLGSKVTVVEMLPKMLP-KTDADTTQALQRSLKKQGM 235
Query: 201 KFRFG--VGVSEIIGN--PVEAVKIGDE-TVEADLVLVATGVRANVD--LAKDAGLEV-N 252
F G VG E+ G V+ VK E V D VL++ G + N D ++ G+E+
Sbjct: 236 TFNMGTTVGGIEVSGGKATVKLVKNDKEKEVVCDKVLMSIGRKPNTDGLGLEELGVEMGE 295
Query: 253 RG-IVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGK--D 309
RG I V++ T+ P IYAIG D + G L A A V E + GK +
Sbjct: 296 RGTIKVDDNYATNVPGIYAIG------DLIPG----PMLAHKASEEAVVFVERLVGKNSE 345
Query: 310 VKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKF----RGSTKPEYYPGGKPI 365
V + + T E+ + G TE++ + EG V VGKF G + G
Sbjct: 346 VHYGTIPGVCYTW---PEVASVGKTEQQLQEEGTPVKVGKFNFVGNGRARAMAETEG--- 399
Query: 366 TVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYLETAYAPPISPTID 425
VK+I E G+++G I G R I A+ G DI + + P +S +
Sbjct: 400 FVKIIAHAENGQVLGVHIF-GPRASDMIAEAVAVMSYGGTAHDIGAMFHGH-PTLSEAVK 457
Query: 426 PITVAADMA 434
+ D A
Sbjct: 458 EAALDVDGA 466
>dbj|BAB06483.1| (AP001516) dihydrolipoamide dehydrogenase [Bacillus halodurans]
Length = 474
Score = 94.8 bits (232), Expect = 2e-18
Identities = 98/350 (28%), Positives = 163/350 (46%), Gaps = 44/350 (12%)
Query: 101 LVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAE 160
+++ATGS + P ++ E V T D+ ++++ PK +++G G+IG+E A
Sbjct: 147 VIIATGSSPRVLPGMEIDGEAVLTS---DEALKMEQL-----PKSMLIVGGGVIGIEWAS 198
Query: 161 AFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGV-SEIIGNPVEAV 219
G++V V+E +LPT D D+A ++ +++ GV F+ V +E + +V
Sbjct: 199 MLNDFGVDVTVIEYGPRILPTE-DADIAKEAERLLKKRGVTFKTNAKVLAETLEKGDNSV 257
Query: 220 KIG------DETVEADLVLVATGVRANVDLAKDAGLE------VNRGIVVNEYLQTSDPD 267
I E A+ +LV+ G NV+ D GLE ++ I VNE+ QT +
Sbjct: 258 VIEAEVGGVSERFTAEKMLVSVGRTPNVN---DIGLENTDIEVIDGAIAVNEWYQTKESH 314
Query: 268 IYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLE 327
IYAIGD VI + QL A +A EH+ + A E
Sbjct: 315 IYAIGD---VIGGM-------QLAHVASHEGILAVEHMTDHKPEPLNYLTVARCVYSHPE 364
Query: 328 IGTFGMTEERAKREGIDVVVG--KFRGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIVG 385
+ + G++E AK +G +V VG F+ K Y G VK++ K+ L+G ++G
Sbjct: 365 MASIGLSEAEAKEKGYEVKVGTFPFQAIGKALVY-GESDGFVKILSDKKTDDLLGVHMIG 423
Query: 386 GERVWGRIMTLSALAQMGAKVEDIAYLETAYAPPISPTIDPITVAADMAL 435
+++ +AL AKV D A+ E A+ PT+ + A +A+
Sbjct: 424 PHVT--DMISEAAL----AKVLDAAHWEVAHTIHPHPTLSEVVGEAALAV 467
>pir||D55514 dihydrolipoamide dehydrogenase (EC 1.8.1.4) [validated] -
Alcaligenes eutrophus >gi|497266|gb|AAA21600.1| (U09865)
dihydrolipoamide dehydrogenase [Ralstonia eutropha]
Length = 594
Score = 94.4 bits (231), Expect = 2e-18
Identities = 110/357 (30%), Positives = 170/357 (46%), Gaps = 59/357 (16%)
Query: 77 VEAKKIDRERKVVITDKGEVPYDKLVLATGSKA----FIPPI-KGVENEGVFTLKSLDDV 131
+E + + E K K + ++K ++A GS+A FIP + V++ G L +
Sbjct: 239 MEVELTEGEGKRSTGKKTVIRFEKAIIAAGSQAVKLPFIPEDPRIVDSTGALELPEV--- 295
Query: 132 RRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIV 191
P K +VIG G+IGLE A ++ LG ++ VVE+L+ L+ D+D+ +
Sbjct: 296 -----------PNKMLVIGGGIIGLEMATVYSTLGADIDVVEMLDGLM-NGADRDLVKVW 343
Query: 192 QKNMEEHGVKFRFGVGVSEIIGNPVEA------VKIGDETVEA-----DLVLVATGVRAN 240
+K ++ RFG + + VEA VK E A DLVLV+ G N
Sbjct: 344 EKKNKD-----RFGKVMLKTKTVGVEAKPDGIYVKFEGEAAPAEPQRYDLVLVSVGRSPN 398
Query: 241 VD--LAKDAGLEVN-RGIV-VNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVR 296
A+ AG+ V+ RG + V++ ++T+ P I+AIGD + G+ L+ AV
Sbjct: 399 GKRISAEKAGVAVSERGFINVDKQMRTNVPHIFAIGD-------IVGQPMLAH---KAVH 448
Query: 297 MAKVAAEHIAGKDVKF--RPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGST 354
A VAAE G+ F + + + A T D E+ G+TE+ K +GI G F +
Sbjct: 449 EAHVAAEAAHGEKAYFDAKQIPSVAFT---DPEVAWAGLTEDECKEKGIKYSKGVFPWAA 505
Query: 355 KPEYYPGGKPI-TVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALA-QMGAKVEDI 409
G+ KLIF +E R+IG IVG G +++ LA +MGA DI
Sbjct: 506 SGRAIANGRDEGFTKLIFDEETHRVIGGGIVGTHA--GDLISEVCLAIEMGADAVDI 560
>sp|P31052|DLD2_PSEPU DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONENT OF 2-OXOGLUTARATE
DEHYDROGENASE COMPLEX) (LPD-GLC) (GLYCINE OXIDATION
SYSTEM L-FACTOR) >gi|1256717|gb|AAA96437.1| (M80189)
lipoamide dehydrogenase [Pseudomonas putida]
Length = 478
Score = 94.4 bits (231), Expect = 2e-18
Identities = 107/379 (28%), Positives = 173/379 (45%), Gaps = 53/379 (13%)
Query: 72 KMMLG--VEAKKIDRERKVVITDKGEVPYDKLVLATGSKAF-IPPIKGVENEGVFTLKSL 128
K++ G VE K D +V+ + ++LA+GS+ IPP +N V + +L
Sbjct: 123 KLLAGKKVEVTKADGTTEVIEAEN-------VILASGSRPIDIPPAPVDQNVIVDSTGAL 175
Query: 129 DDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMA 188
+ + PK+ VIGAG+IGLE +A+LG EV V+E L+ L D ++
Sbjct: 176 EF---------QAVPKRLGVIGAGVIGLELGSVWARLGAEVTVLEALDTFL-MAADTAVS 225
Query: 189 SIVQKNMEEHGVKFRFGVGV--SEIIGNPVEAVKI---GDETVEADLVLVATGVRANVD- 242
QK + + G+ + G V S++ GN VE G++ + D ++VA G R
Sbjct: 226 KEAQKTLTKQGLDIKLGARVTGSKVNGNEVEVTYTNAEGEQKITFDKLIVAVGRRPVTTD 285
Query: 243 -LAKDAGLEVN-RG-IVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAK 299
LA D+G+ ++ RG I V++Y TS P +YAIG D V G + + + +
Sbjct: 286 LLAADSGVTIDERGYIFVDDYCATSVPGVYAIG------DVVRGMMLAHKASEEGIMVVE 339
Query: 300 VAAEHIAGKDVKFRP-VFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKF----RGST 354
H A + P V T EI G TE+ K EG++V VG F G
Sbjct: 340 RIKGHKAQMNYDLIPSVIYT------HPEIAWVGKTEQALKAEGVEVNVGTFPFAASGRA 393
Query: 355 KPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALA-QMGAKVEDIAYLE 413
GG VK+I + R++G ++G ++ A+A + G ED+ +
Sbjct: 394 MAANDTGG---FVKVIADAKTDRVLGVHVIGPSA--AELVQQGAIAMEFGTSAEDLGMMV 448
Query: 414 TAYAPPISPTIDPITVAAD 432
++ P +S + +A +
Sbjct: 449 FSH-PTLSEALHEAALAVN 466
>gb|AAD30450.1|AF121894_1 (AF121894) lipoamide dehydrogenase [Ascaris suum]
Length = 498
Score = 94.4 bits (231), Expect = 2e-18
Identities = 95/326 (29%), Positives = 150/326 (45%), Gaps = 40/326 (12%)
Query: 101 LVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAE 160
+++ATGS+ + P G++ + + S + K+ P+K VVIGAG+IG E
Sbjct: 168 ILMATGSE--VTPFPGIDIDEDQIVSSTGALSL------KKVPEKMVVIGAGVIGAELGS 219
Query: 161 AFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEI------IGN 214
+ +LG +V VVE L+H +D ++A + + + G+KF V+ I
Sbjct: 220 VWQRLGAQVTVVEFLDHAGGAGIDLELAKLFHSTLGKQGMKFMLNTKVTSAKKEGGKIVV 279
Query: 215 PVEAVKIGD-ETVEADLVLVATGVRANVDL--AKDAGLEVNR--GIVVNEYLQTSDPDIY 269
EAVK G +T+EAD +LVA G R ++ G++++ + VNE QT P IY
Sbjct: 280 QTEAVKGGKAQTLEADTLLVAIGRRPYTAQLGTENVGIKLDEKGRVPVNERFQTCVPSIY 339
Query: 270 AIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELF-DLEI 328
AIGD + L A + E +AG +N + ++ E+
Sbjct: 340 AIGDVMQG----------PMLAHKAEDEGVLCVEGLAGGPTHID--YNCIPSVIYTHPEV 387
Query: 329 GTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGGKPI-TVKLIFRKEEGRLIGAQIVG-- 385
G +EE K E + VGKF S + VK++ K+ RL+G I+G
Sbjct: 388 AWVGKSEETLKEENVKYKVGKFPFSANSRAKTNNETDGFVKVLGDKDTDRLLGVHIMGPN 447
Query: 386 -GERVWGRIMTLSALAQMGAKVEDIA 410
GE + ++ L + GA EDIA
Sbjct: 448 AGEMIAEAVIGL----EYGASCEDIA 469
>gi|6321091 dihydrolipoamide dehydrogenase precursor (mature protein is the E3
component of alpha-ketoacid dehydrogenase complexes);
Lpd1p [Saccharomyces cerevisiae]
>gi|118678|sp|P09624|DLDH_YEAST DIHYDROLIPOAMIDE
DEHYDROGENASE, MITOCHONDRIAL PRECURSOR
>gi|82983|pir||A30151 dihydrolipoamide dehydrogenase (EC
1.8.1.4) precursor - yeast (Saccharomyces cerevisiae)
>gi|171390|gb|AAA34565.1| (J03645) dihydrolipoamide
dehydrogenase [Saccharomyces cerevisiae]
>gi|171848|gb|AAB63974.1| (M20880) lipoamide
dehydrongenase [Saccharomyces cerevisiae]
>gi|559939|emb|CAA86354.1| (Z46255) lpd1, dhlp1, len:
499. CAI: 0.26, DLDH_YEAST P09624 DIHYDROLIPOAMIDE
DEHYDROGENASE PRECURSOR [Saccharomyces cerevisiae]
>gi|836736|dbj|BAA09220.1| (D50617) dihydrolipoamide
dehydrogenase precursor [Saccharomyces cerevisiae]
>gi|1100786|dbj|BAA07999.1| (D44596) lipoamide
dehydrogenase [Saccharomyces cerevisiae]
Length = 499
Score = 93.2 bits (228), Expect = 5e-18
Identities = 95/350 (27%), Positives = 161/350 (45%), Gaps = 46/350 (13%)
Query: 101 LVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAE 160
+++ATGS+ + P G+E + + S + K PK+ +IG G+IGLE
Sbjct: 170 IIVATGSE--VTPFPGIEIDEEKIVSSTGALSL------KEIPKRLTIIGGGIIGLEMGS 221
Query: 161 AFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGV--------SEII 212
+++LG +V VVE + +M D ++A QK +++ G+ F+ V ++
Sbjct: 222 VYSRLGSKVTVVEFQPQIGASM-DGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVV 280
Query: 213 GNPVEAVKIG-DETVEADLVLVATGVRANVD--LAKDAGLEVNR--GIVVNEYLQTSDPD 267
VE K E +EA+++LVA G R + A+ GLEV++ +V+++ + P
Sbjct: 281 EIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQFNSKFPH 340
Query: 268 IYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELFD-L 326
I +GD V + G +AV M K H+ +N + ++
Sbjct: 341 IKVVGD---VTFGPMLAHKAEEEGIAAVEMLKTGHGHVN---------YNNIPSVMYSHP 388
Query: 327 EIGTFGMTEERAKREGIDVVVGKF----RGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQ 382
E+ G TEE+ K GID +GKF K G VK++ + R++GA
Sbjct: 389 EVAWVGKTEEQLKEAGIDYKIGKFPFAANSRAKTNQDTEG---FVKILIDSKTERILGAH 445
Query: 383 IVGGERVWGRIMTLSALA-QMGAKVEDIAYLETAYAPPISPTIDPITVAA 431
I+G G ++ + LA + GA ED+A + A+ P +S +AA
Sbjct: 446 IIGPNA--GEMIAEAGLALEYGASAEDVARVCHAH-PTLSEAFKEANMAA 492
>pir||E75262 2-oxo acid dehydrogenase, lipoamide dehydrogenase E3 component -
Deinococcus radiodurans (strain R1)
>gi|6460350|gb|AAF12067.1|AE002082_3 (AE002082) 2-oxo
acid dehydrogenase, lipoamide dehydrogenase E3 component
[Deinococcus radiodurans]
Length = 480
Score = 92.4 bits (226), Expect = 9e-18
Identities = 110/399 (27%), Positives = 177/399 (43%), Gaps = 47/399 (11%)
Query: 50 GTIEKPEDVIVFPNEFYEKQKIKMMLGV-EAKKIDRERKVVITDKGEVPYDKLVLATGSK 108
G ++K + F + K K+ G + + D + VV EV +++ATGS
Sbjct: 107 GVVDKLTGGVAF---LFRKNKVTSFHGYGKLVRQDGQEWVVDAAGTEVKAKNVIVATGSN 163
Query: 109 A-FIP--PIKG--VENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFA 163
+P P G VEN G + + P K VIGAG+IGLE +
Sbjct: 164 PRALPGVPFGGHIVENSGALQIDQV--------------PGKLGVIGAGVIGLELGSVWR 209
Query: 164 KLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEI----IGNPVEAV 219
+LG +V ++E + L D +A K ++ G+ F FGV + EI G V
Sbjct: 210 RLGAQVTILEAMPGFL-MAADDAIAKEALKQFQKQGLDFHFGVKIGEIKQDDSGVTVTYE 268
Query: 220 KIGDE-TVEADLVLVATGVRANVD--LAKDAGLEVN-RGIV-VNEYLQTSDPDIYAIGDC 274
+ G + T + D ++V+ G N A GL ++ RG V V+++ +T+ P +YAIGD
Sbjct: 269 ENGSQVTAQFDKLIVSIGRVPNTGGLNADGVGLALDERGFVKVDQHYRTNLPGVYAIGD- 327
Query: 275 AEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTFGMT 334
VI + G + M A H+ DV ++ + EI G+T
Sbjct: 328 --VIGGAMLAHKAEEEGVALAEMIAGQAGHV-NYDVIPWIIYTSP-------EIAWAGLT 377
Query: 335 EERAKREGIDVVVGKFRGSTKPEYYPGGKPI-TVKLIFRKEEGRLIGAQIVGGERVWGRI 393
E++AK G++V G+F S G P VK++ + +L+G ++GG V I
Sbjct: 378 EKQAKERGLNVKTGQFPFSANGRALGHGDPRGFVKVVADAQTDKLLGVHMIGG-GVSELI 436
Query: 394 MTLSALAQMGAKVEDIAYLETAYAPPISPTIDPITVAAD 432
+ A+ + G ED+A A+ P +S + +A D
Sbjct: 437 GEIVAIMEFGGSAEDLARTIHAH-PTLSEVVKEAALAVD 474
>gb|AAF37698.1|AF228637_1 (AF228637) lipoamide dehydrogenase [Arabidopsis thaliana]
Length = 570
Score = 92.4 bits (226), Expect = 9e-18
Identities = 98/360 (27%), Positives = 162/360 (44%), Gaps = 55/360 (15%)
Query: 101 LVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAE 160
+++ATGS F+P KG+E +G + S D +++ P+ ++G+G IGLE ++
Sbjct: 220 IIIATGSVPFVP--KGIEVDGKTVITS-DHALKLESV-----PEWIAIVGSGYIGLEFSD 271
Query: 161 AFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNM-EEHGVKFRFGVGVSEII----GNP 215
+ LG EV +E L+ L+P D +++ + Q+ + + + GV S+I G P
Sbjct: 272 VYTALGSEVTFIEALDQLMPG-FDPEISKLAQRVLINPRKIDYHTGVFASKITPARDGKP 330
Query: 216 V------EAVKIGDETVEADLVLVATGVRANVDLAKDAGLE-----VNRGIV-VNEYLQT 263
V K +T+E D L+ATG GLE RG + V+E ++
Sbjct: 331 VLIELIDAKTKEPKDTLEVDAALIATG---RAPFTNGLGLENVNVVTQRGFIPVDERMRV 387
Query: 264 SD------PDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFN 317
D P++Y IGD GK L+ +A E ++G+D +
Sbjct: 388 IDGKGTLVPNLYCIGD-------ANGKLMLAH---AASAQGISVVEQVSGRDHVLNHLSI 437
Query: 318 TAITELFDLEIGTFGMTEERAKREG------IDVVVGKFRGSTKPEYYPGGKPITVKLIF 371
A EI G+TE +AK +G + VV F+ +TK G+ I K+I+
Sbjct: 438 PAAC-FTHPEISMVGLTEPQAKEKGEKEGFKVSVVKTSFKANTKALAENEGEGI-AKMIY 495
Query: 372 RKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYLETAYAPPISPTIDPITVAA 431
R + G ++G I G I S +G +++DI A+ P +S +D + AA
Sbjct: 496 RPDNGEILGVHIFGLHAA-DLIHEASNAIALGTRIQDIKLAVHAH-PTLSEVLDELFKAA 553
>gb|AAC44345.1| (U62057) dihydrolipoamide dehydrogenase [Mycoplasma capricolum]
Length = 629
Score = 91.7 bits (224), Expect = 1e-17
Identities = 99/374 (26%), Positives = 173/374 (45%), Gaps = 68/374 (18%)
Query: 67 EKQKIKMMLGVEAKKIDRERKVVITDKGEVPYDKLVLATGSKAFIPPIKG---------- 116
+K K+ + G + I ++ + + + LV+A+GS P+ G
Sbjct: 266 DKNKVTQIKG---EAIALDKNTISVNNKNYRVNNLVIASGSTPNHLPLPGFDQGRKDGII 322
Query: 117 VENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLE 176
+++ G+ ++ + P+ VVIG G+IG+E + FA LG +V V++ L
Sbjct: 323 IDSTGILSVPKI--------------PETLVVIGGGVIGIEFSCLFASLGTKVTVLQGLP 368
Query: 177 HLLPTMLDKDMASIVQKNME-EHGVKFRFGVGVSEI-IGNPVEAVKIGDETVEADLVLVA 234
+L MLDKD+ + K ++ + ++ V E G+ V + D+ ++ + VL +
Sbjct: 369 TIL-EMLDKDIIDAMTKELKNRYNIQVITNASVKEFKDGSVVYQIDGQDQMIKGEYVLES 427
Query: 235 TGVRANVDLAKDAGLEV--NRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGT 292
G + ++ ++ GLE+ +G+VVNEY +T+ +YAIGD V GK L+Q
Sbjct: 428 VGRKTSLTGFENIGLELTPRKGVVVNEYQETNLDGVYAIGD-------VVGKSMLAQ--- 477
Query: 293 SAVRMAKVAAEHIAGKDVK---------FRPVFNTAITELFDLEIGTFGMTEERAKREGI 343
+AV+ A VAA IA K K + V + T E+ G TE++ K+E I
Sbjct: 478 TAVKGAIVAANRIAKKANKAHAEDIVMNYDKVPSCIYTH---PEVSMIGKTEQQLKQENI 534
Query: 344 DVVVGKFRGSTKPEYYPGGKPIT-------VKLIFRKEEGRLIGAQIVGGERVWGRIMTL 396
+ KF S GK + VK+I + ++GA I+ G R I +
Sbjct: 535 EYKAFKFPFSAI------GKALADDDTSGFVKIIVEPKYKTILGAHII-GNRATEMISEI 587
Query: 397 SALAQMGAKVEDIA 410
+A+ + + +IA
Sbjct: 588 TAVIECEGTITEIA 601
>dbj|BAA77214.1| (D85764) cytosolic monodehydroascorbate reductase [Oryza sativa]
Length = 435
Score = 90.5 bits (221), Expect = 3e-17
Identities = 87/331 (26%), Positives = 143/331 (42%), Gaps = 27/331 (8%)
Query: 2 RVVVIGSGTAGSNFAL-FLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
+ V++G G A A F ++ + E+ +I KE Y AL S P++
Sbjct: 8 KYVILGGGVAAGYAAREFAKQGVKPGELAIISKEAVAPYERPAL----SKGYLFPQNAAR 63
Query: 61 FPN--------------EFYEKQKIKMMLGVEAKKIDRERKVVITDKGEV-PYDKLVLAT 105
P E+Y ++ I+++L E K D K + + G Y+ L++AT
Sbjct: 64 LPGFHVCVGSGGERLLPEWYSEKGIELILSTEIVKADLASKTLTSAVGATFTYEILIIAT 123
Query: 106 GSKAFIPP---IKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAF 162
GS +G ++ + L+ +DD ++ I + KAV++G G IGLE + A
Sbjct: 124 GSSVIKLSDFGTQGADSNNILYLREVDDADKLVAAIQAKKGGKAVIVGGGYIGLELSAAL 183
Query: 163 AKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFG---VGVSEIIGNPVEAV 219
+V +V +P + D+A+ + GVK G VG V AV
Sbjct: 184 KINDFDVTMVFPEPWCMPRLFTADIAAFYESYYTNKGVKIVKGTVAVGFDADANGDVTAV 243
Query: 220 KIGDETV-EADLVLVATGVRANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVI 278
+ + +V EAD+V V G R L K E GI + + +TS P +YA+GD A
Sbjct: 244 NLKNGSVLEADIVGVGVGGRPLTTLFKGQVAEEKGGIKTDAFFETSVPGVYAVGDVATFP 303
Query: 279 DAVTGKRTLSQLGTSAVRMAKVAAEHIAGKD 309
+ + + A + A+ A + I GK+
Sbjct: 304 MKMYNELRRVEHVDHARKSAEQAVKAIKGKE 334
>sp|P54533|DLD2_BACSU DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONENT OF BRANCHED-CHAIN
ALPHA-KETO ACID DEHYDROGENASE COMPLEX) (LPD-VAL)
Length = 474
Score = 90.1 bits (220), Expect = 4e-17
Identities = 102/357 (28%), Positives = 168/357 (46%), Gaps = 58/357 (16%)
Query: 100 KLVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGA 159
++++ATGS+ + P G+E +G L S D+ +++E P+ +++G G+IG+E A
Sbjct: 146 QVIIATGSRPRMLP--GLEVDGKSVLTS-DEALQMEEL-----PQSIIIVGGGVIGIEWA 197
Query: 160 EAFAKLGMEVLVVELLEHLLPT---MLDKDMASIVQKNMEEHGVKFRFGVGV-------- 208
G++V V+E + +LPT + K+M S+++K G++F G V
Sbjct: 198 SMLHDFGVKVTVIEYADRILPTEDLEISKEMESLLKKK----GIQFITGAKVLPDTMTKT 253
Query: 209 SEIIGNPVEAVKIGDE-TVEADLVLVATGVRANVD---LAKDAGLEVNRGIVVNEYLQTS 264
S+ I ++A K G+ T A+ +LV+ G +AN++ L + N I VNE QT
Sbjct: 254 SDDIS--IQAEKDGETVTYSAEKMLVSIGRQANIEGIGLENTDIVTENGMISVNESCQTK 311
Query: 265 DPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELF 324
+ IYAIGD VI + QL A +A EH AG + P+ T + +
Sbjct: 312 ESHIYAIGD---VIGGL-------QLAHVASHEGIIAVEHFAG--LNPHPLDPTLVPKCI 359
Query: 325 --DLEIGTFGMTEERAKREGIDVVVGK--FRGSTKPEYYPGGKPITVKLIFRKEEGRLIG 380
E + G+TE+ AK G +V +GK F K Y G VK++ ++ ++G
Sbjct: 360 YSSPEAASVGLTEDEAKANGHNVKIGKFPFMAIGKALVY-GESDGFVKIVADRDTDDILG 418
Query: 381 AQIVGGERVWGRIMTLSALAQMG-AKVEDIAYLETAYA----PPISPTIDPITVAAD 432
++G +++ G AKV D E P +S I +AAD
Sbjct: 419 VHMIGPH-------VTDMISEAGLAKVLDATPWEVGQTIHPHPTLSEAIGEAALAAD 468
>gb|AAF37699.1|AF228638_1 (AF228638) lipoamide dehydrogenase [Arabidopsis thaliana]
Length = 567
Score = 90.1 bits (220), Expect = 4e-17
Identities = 98/360 (27%), Positives = 161/360 (44%), Gaps = 55/360 (15%)
Query: 101 LVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAE 160
+++ATGS F+P KG+E +G + S D +++ P ++G+G IGLE ++
Sbjct: 217 IIIATGSVPFVP--KGIEVDGKTVITS-DHALKLESV-----PDWIAIVGSGYIGLEFSD 268
Query: 161 AFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNM-EEHGVKFRFGVGVSEII----GNP 215
+ LG EV +E L+ L+P D +++ + Q+ + + + GV S+I G P
Sbjct: 269 VYTALGSEVTFIEALDQLMPG-FDPEISKLAQRVLINTRKIDYHTGVFASKITPAKDGKP 327
Query: 216 V------EAVKIGDETVEADLVLVATGVRANVDLAKDAGLE-----VNRGIV-VNEYLQT 263
V K +T+E D L+ATG GLE RG + V+E ++
Sbjct: 328 VLIELIDAKTKEPKDTLEVDAALIATG---RAPFTNGLGLENINVTTQRGFIPVDERMRV 384
Query: 264 SD------PDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFN 317
D P +Y IGD GK L+ +A E + G+D +
Sbjct: 385 IDGNGKLVPHLYCIGD-------ANGKLMLAH---AASAQGISVVEQVTGRDHVLNHLSI 434
Query: 318 TAITELFDLEIGTFGMTE----ERAKREGIDVVVGK--FRGSTKPEYYPGGKPITVKLIF 371
A EI G+TE E+A++EG V + K F+ +TK G+ + K+I+
Sbjct: 435 PAAC-FTHPEISMVGLTEPQAREKAEKEGFKVSIAKTSFKANTKALAENEGEGL-AKMIY 492
Query: 372 RKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYLETAYAPPISPTIDPITVAA 431
R + G ++G I G I S +G +++DI A+ P +S +D + AA
Sbjct: 493 RPDNGEILGVHIFGLHAA-DLIHEASNAIALGTRIQDIKLAVHAH-PTLSEVVDELFKAA 550
>emb|CAA54878.1| (X77920) outer membrane protein p64k or PM-6 [Neisseria
meningitidis]
Length = 594
Score = 88.5 bits (216), Expect = 1e-16
Identities = 111/370 (30%), Positives = 163/370 (44%), Gaps = 67/370 (18%)
Query: 92 DKGEVPYDKLVLATGSKA----FIPPI-KGVENEGVFTLKSLDDVRRIKEYIGKRNPKKA 146
+K V + ++A GS+ FIP + +++ G LK + P K
Sbjct: 254 EKKIVAFKNCIIAAGSRVTKLPFIPEDPRIIDSSGALALKEV--------------PGKL 299
Query: 147 VVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFG- 205
++IG G+IGLE ++ LG + VVE+++ L+ D+D+ + QK E +RF
Sbjct: 300 LIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-ADRDLVKVWQKQNE-----YRFDN 353
Query: 206 --VGVSEIIGNP--------VEAVKIGDETVEADLVLVATGVRANVDL--AKDAGLEV-N 252
V + P E E D VLVA G N L A+ AG+ V +
Sbjct: 354 IMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTD 413
Query: 253 RGIV-VNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVK 311
RG + V++ ++T+ P IYAIGD + G+ L+ AV VAAE+ AG
Sbjct: 414 RGFIEVDKQMRTNVPHIYAIGD-------IVGQPMLAH---KAVHEGHVAAENCAGHKAY 463
Query: 312 F--RPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGG--KPITV 367
F R + A T E+ G TE AK G + F + G KP T
Sbjct: 464 FDARVIPGVAYT---SPEVAWVGETELSAKASGRKITKANFPWAASGRAIANGCDKPFT- 519
Query: 368 KLIFRKEEGRLIGAQIVG--GERVWGRIMTLSALAQMGAKVEDIAYLETAYAPPISPTID 425
KLIF E GR+IG IVG G + G + +MG DI +T + P +
Sbjct: 520 KLIFDAETGRIIGGGIVGPNGGDMIGEV---CLAIEMGCDAADIG--KTIHPHPTLG--E 572
Query: 426 PITVAADMAL 435
I +AA++AL
Sbjct: 573 SIGMAAEVAL 582
>sp|P14218|DLDH_PSEFL DIHYDROLIPOAMIDE DEHYDROGENASE (E3 COMPONENT OF 2-OXOGLUTARATE
DEHYDROGENASE COMPLEX) >gi|151345|gb|AAA99234.1|
(M28356) dihydrolipoamide dehydrogenase [Pseudomonas
fluorescens]
Length = 478
Score = 86.6 bits (211), Expect = 5e-16
Identities = 87/301 (28%), Positives = 139/301 (45%), Gaps = 26/301 (8%)
Query: 143 PKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKF 202
PKK VIGAG+IGLE +A+LG EV V+E L+ LP D+ +A K + + G+
Sbjct: 181 PKKLGVIGAGVIGLELGSVWARLGAEVTVLEALDKFLPA-ADEQIAKEALKVLTKQGLNI 239
Query: 203 RFG--VGVSEIIGNPVEAV---KIGDETVEADLVLVATGVRANVD--LAKDAGLEVN-RG 254
R G V SE+ V G++ D ++VA G R LA D+G+ ++ RG
Sbjct: 240 RLGARVTASEVKKKQVTVTFTDANGEQKETFDKLIVAVGRRPVTTDLLAADSGVTLDERG 299
Query: 255 -IVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFR 313
I V+++ +TS P ++AIG D V G + L A + AE IAG +
Sbjct: 300 FIYVDDHCKTSVPGVFAIG------DVVRG----AMLAHKASEEGVMVAERIAGHKAQMN 349
Query: 314 PVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGGKPI-TVKLIFR 372
++ EI G TE+ K EG++V VG F + VK+I
Sbjct: 350 YDLIPSVIYTHP-EIAWVGKTEQTLKAEGVEVNVGTFPFAASGRAMAANDTTGLVKVIAD 408
Query: 373 KEEGRLIGAQIVGGERVWGRIMTLSALA-QMGAKVEDIAYLETAYAPPISPTIDPITVAA 431
+ R++G ++G ++ A+ + G ED+ + ++ P +S + +A
Sbjct: 409 AKTDRVLGVHVIGPSA--AELVQQGAIGMEFGTSAEDLGMMVFSH-PTLSEALHEAALAV 465
Query: 432 D 432
+
Sbjct: 466 N 466
>pir||A45796 dihydrolipoamide dehydrogenase (EC 1.8.1.4) - Pseudomonas
fluorescens >gi|11350556|pir||A83449 lipoamide
dehydrogenase-glc PA1587 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9947550|gb|AAG04976.1|AE004586_14 (AE004586)
lipoamide dehydrogenase-glc [Pseudomonas aeruginosa]
Length = 478
Score = 86.6 bits (211), Expect = 5e-16
Identities = 87/301 (28%), Positives = 139/301 (45%), Gaps = 26/301 (8%)
Query: 143 PKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKF 202
PKK VIGAG+IGLE +A+LG EV V+E L+ LP D+ +A K + + G+
Sbjct: 181 PKKLGVIGAGVIGLELGSVWARLGAEVTVLEALDKFLPA-ADEQIAKEALKVLTKQGLNI 239
Query: 203 RFG--VGVSEIIGNPVEAV---KIGDETVEADLVLVATGVRANVD--LAKDAGLEVN-RG 254
R G V SE+ V G++ D ++VA G R LA D+G+ ++ RG
Sbjct: 240 RLGARVTASEVKKKQVTVTFTDANGEQKETFDKLIVAVGRRPVTTDLLAADSGVTLDERG 299
Query: 255 -IVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFR 313
I V+++ +TS P ++AIG D V G + L A + AE IAG +
Sbjct: 300 FIYVDDHCKTSVPGVFAIG------DVVRG----AMLAHKASEEGVMVAERIAGHKAQMN 349
Query: 314 PVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGGKPI-TVKLIFR 372
++ EI G TE+ K EG++V VG F + VK+I
Sbjct: 350 YDLIPSVIYTHP-EIAWVGKTEQTLKAEGVEVNVGTFPFAASGRAMAANDTTGLVKVIAD 408
Query: 373 KEEGRLIGAQIVGGERVWGRIMTLSALA-QMGAKVEDIAYLETAYAPPISPTIDPITVAA 431
+ R++G ++G ++ A+ + G ED+ + ++ P +S + +A
Sbjct: 409 AKTDRVLGVHVIGPSA--AELVQQGAIGMEFGTSAEDLGMMVFSH-PTLSEALHEAALAV 465
Query: 432 D 432
+
Sbjct: 466 N 466
>pdb|1LPF|A Chain A, Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4) Complex With
Flavin-Adenine-Dinucleotide (Fad) >gi|494263|pdb|1LPF|B
Chain B, Dihydrolipoamide Dehydrogenase (E.C.1.8.1.4)
Complex With Flavin-Adenine-Dinucleotide (Fad)
Length = 477
Score = 86.6 bits (211), Expect = 5e-16
Identities = 87/301 (28%), Positives = 139/301 (45%), Gaps = 26/301 (8%)
Query: 143 PKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKF 202
PKK VIGAG+IGLE +A+LG EV V+E L+ LP D+ +A K + + G+
Sbjct: 180 PKKLGVIGAGVIGLELGSVWARLGAEVTVLEALDKFLPA-ADEQIAKEALKVLTKQGLNI 238
Query: 203 RFG--VGVSEIIGNPVEAV---KIGDETVEADLVLVATGVRANVD--LAKDAGLEVN-RG 254
R G V SE+ V G++ D ++VA G R LA D+G+ ++ RG
Sbjct: 239 RLGARVTASEVKKKQVTVTFTDANGEQKETFDKLIVAVGRRPVTTDLLAADSGVTLDERG 298
Query: 255 -IVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFR 313
I V+++ +TS P ++AIG D V G + L A + AE IAG +
Sbjct: 299 FIYVDDHCKTSVPGVFAIG------DVVRG----AMLAHKASEEGVMVAERIAGHKAQMN 348
Query: 314 PVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGGKPI-TVKLIFR 372
++ EI G TE+ K EG++V VG F + VK+I
Sbjct: 349 YDLIPSVIYTHP-EIAWVGKTEQTLKAEGVEVNVGTFPFAASGRAMAANDTTGLVKVIAD 407
Query: 373 KEEGRLIGAQIVGGERVWGRIMTLSALA-QMGAKVEDIAYLETAYAPPISPTIDPITVAA 431
+ R++G ++G ++ A+ + G ED+ + ++ P +S + +A
Sbjct: 408 AKTDRVLGVHVIGPSA--AELVQQGAIGMEFGTSAEDLGMMVFSH-PTLSEALHEAALAV 464
Query: 432 D 432
+
Sbjct: 465 N 465
>pdb|1OJT| Structure Of Dihydrolipoamide Dehydrogenase
Length = 482
Score = 86.2 bits (210), Expect = 7e-16
Identities = 110/370 (29%), Positives = 162/370 (43%), Gaps = 67/370 (18%)
Query: 92 DKGEVPYDKLVLATGSKA----FIPPI-KGVENEGVFTLKSLDDVRRIKEYIGKRNPKKA 146
+K V + ++A GS+ FIP + +++ G LK + P K
Sbjct: 143 EKKIVAFKNCIIAAGSRVTKLPFIPEDPRIIDSSGALALKEV--------------PGKL 188
Query: 147 VVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFG- 205
++IG G+IGLE ++ LG + VVE+++ L+ D+D+ + QK E +RF
Sbjct: 189 LIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-ADRDLVKVWQKQNE-----YRFDN 242
Query: 206 --VGVSEIIGNP--------VEAVKIGDETVEADLVLVATGVRANVDL--AKDAGLEV-N 252
V + P E E D VLVA G N L A+ AG+ V +
Sbjct: 243 IMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTD 302
Query: 253 RGIV-VNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVK 311
RG + V++ ++T+ P IYAIGD + G+ L+ AV VAAE+ AG
Sbjct: 303 RGFIEVDKQMRTNVPHIYAIGD-------IVGQPMLAH---KAVHEGHVAAENCAGHKAY 352
Query: 312 F--RPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGG--KPITV 367
F R + A T E+ G TE AK + F + G KP T
Sbjct: 353 FDARVIPGVAYT---SPEVAWVGETELSAKASARKITKANFPWAASGRAIANGCDKPFT- 408
Query: 368 KLIFRKEEGRLIGAQIVG--GERVWGRIMTLSALAQMGAKVEDIAYLETAYAPPISPTID 425
KLIF E GR+IG IVG G + G + +MG DI +T + P +
Sbjct: 409 KLIFDAETGRIIGGGIVGPNGGDMIGEV---CLAIEMGCDAADIG--KTIHPHPTLG--E 461
Query: 426 PITVAADMAL 435
I +AA++AL
Sbjct: 462 SIGMAAEVAL 471
>pdb|1BHY| Low Temperature Middle Resolution Structure Of P64k From Masc Data
Length = 482
Score = 86.2 bits (210), Expect = 7e-16
Identities = 110/370 (29%), Positives = 162/370 (43%), Gaps = 67/370 (18%)
Query: 92 DKGEVPYDKLVLATGSKA----FIPPI-KGVENEGVFTLKSLDDVRRIKEYIGKRNPKKA 146
+K V + ++A GS+ FIP + +++ G LK + P K
Sbjct: 143 EKKIVAFKNCIIAAGSRVTKLPFIPEDPRIIDSSGALALKEV--------------PGKL 188
Query: 147 VVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFG- 205
++IG G+IGLE ++ LG + VVE+++ L+ D+D+ + QK E +RF
Sbjct: 189 LIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-ADRDLVKVWQKQNE-----YRFDN 242
Query: 206 --VGVSEIIGNP--------VEAVKIGDETVEADLVLVATGVRANVDL--AKDAGLEV-N 252
V + P E E D VLVA G N L A+ AG+ V +
Sbjct: 243 IMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTD 302
Query: 253 RGIV-VNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVK 311
RG + V++ ++T+ P IYAIGD + G+ L+ AV VAAE+ AG
Sbjct: 303 RGFIEVDKQMRTNVPHIYAIGD-------IVGQPMLAH---KAVHEGHVAAENCAGHKAY 352
Query: 312 F--RPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGG--KPITV 367
F R + A T E+ G TE AK + F + G KP T
Sbjct: 353 FDARVIPGVAYT---SPEVAWVGETELSAKASARKITKANFPWAASGRAIANGCDKPFT- 408
Query: 368 KLIFRKEEGRLIGAQIVG--GERVWGRIMTLSALAQMGAKVEDIAYLETAYAPPISPTID 425
KLIF E GR+IG IVG G + G + +MG DI +T + P +
Sbjct: 409 KLIFDAETGRIIGGGIVGPNGGDMIGEVY---LAIEMGCDAADIG--KTIHPHPTLG--E 461
Query: 426 PITVAADMAL 435
I +AA++AL
Sbjct: 462 SIGMAAEVAL 471
>gb|AAD48975.1|AF162444_7 (AF162444) contains similarity to Pfam family PF00070 - Pyridine
nucleotide-disulphide oxidoreductase class-I;
score=26.1, E=0.0008, N=1 [Arabidopsis thaliana]
>gi|7267261|emb|CAB81044.1| (AL161502) contains
similarity to Pfam family PF00070 - Pyridine
nucleotide-disulphide oxidoreductase class-I,
score=26.1, E=0.0008, N=1, coded for by A. thaliana cDNA
W43435~strong similarity to~Contains EF-hand
calcium-binding domain AA393-405~contai>
Length = 583
Score = 86.2 bits (210), Expect = 7e-16
Identities = 92/358 (25%), Positives = 156/358 (42%), Gaps = 59/358 (16%)
Query: 2 RVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVF 61
+VV++G+G AG++F L + + E+ +I ++P LP V GT+E V
Sbjct: 60 KVVLLGTGWAGTSFLKNLN--NSQYEVQIISPRNYFAFTPL-LPSVTCGTVEARSVVEPI 116
Query: 62 PNEFYEKQKIKMMLGVEAKKIDRERKVV-------ITDKGE----VPYDKLVLATGSKAF 110
N +K L E KID K V ++ G+ V YD LV+ATG+++
Sbjct: 117 RNIGRKKNVDTSYLEAECFKIDPASKKVYCRSKQGLSSNGKKEFSVDYDYLVIATGAQSN 176
Query: 111 IPPIKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKA---------------VVIGAGLIG 155
I GVE E LK ++D +RI++ + K + VV+G G G
Sbjct: 177 TFNIPGVE-ENCHFLKEVEDAQRIRKTVIDSFEKASLPELSDEERKRILHFVVVGGGPTG 235
Query: 156 LEGAEAF--------------AKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVK 201
+E A AK + + ++E +H+L TM DK + ++ G+
Sbjct: 236 VEFAAELHDFVTEDLVSLYPRAKGSVRITLLEAADHIL-TMFDKRITEFAEEKFSRDGID 294
Query: 202 FRFGVGVSEIIGNPVEAVKIGDE--TVEADLVLVATGVRAN---VDLAKDAGLEVNRGIV 256
+ G V+++ + A G E ++ +++ +TG+ D K G R +
Sbjct: 295 VKLGSMVTKVNEKDISAKTKGGEVSSIPYGMIVWSTGIGTRPVIKDFMKQIGQGNRRALA 354
Query: 257 VNEYLQTSDPD-IYAIGDCA--------EVIDAVTGKRTLSQLGTSAVRMAKVAAEHI 305
+E+L+ D IYA+GDCA E + A+ K + GT ++ + A + I
Sbjct: 355 TDEWLRVEGTDNIYALGDCATINQRKVMEDVSAIFSKADKDKSGTLTLKEFQEAMDDI 412
>sp|O00087|DLDH_SCHPO DIHYDROLIPOAMIDE DEHYDROGENASE, MITOCHONDRIAL PRECURSOR (DLDH)
>gi|11253045|pir||T43405 probable dihydrolipoamide
dehydrogenase (EC 1.8.1.4) - fission yeast
(Schizosaccharomyces pombe) >gi|1911177|gb|AAB97089.1|
(L40360) dihydrolipoamide dehydrogenase
[Schizosaccharomyces pombe]
Length = 512
Score = 85.0 bits (207), Expect = 1e-15
Identities = 104/357 (29%), Positives = 166/357 (46%), Gaps = 61/357 (17%)
Query: 102 VLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKE----YIGKRNPKKAVVIGAGLIGLE 157
++ATGS+ + P GV ++D+ + + Y+ +R PKK V+G G+IGLE
Sbjct: 184 IIATGSE--VKPFPGV---------TIDEKKIVSSTGGPYLYQRYPKKMTVLGGGIIGLE 232
Query: 158 GAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGV--SEIIGNP 215
+++LG EV VVE L + M D D++ + + + + G+KF+ + +++ G+
Sbjct: 233 MGSVWSRLGAEVTVVEFLPAVGGPM-DADISKALSRIISKQGIKFKRSTKLVSAKVNGDS 291
Query: 216 VEAVKIGD------ETVEADLVLVATGVRANVDLAKDAGLE--------VNRGIVVNEYL 261
VE V+I + ET + D++LVA G V + GL+ NR I+ +EY
Sbjct: 292 VE-VEIENMKNNKRETYQTDVLLVAIG---RVPYTEGLGLDKLGISMDKSNRVIMDSEY- 346
Query: 262 QTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKD--VKFRPVFNTA 319
+T+ P I IG DA G L A A E+IA V + +
Sbjct: 347 RTNIPHIRVIG------DATLG----PMLAHKAEDEGIAAVEYIAKGQGHVNYNCIPAVM 396
Query: 320 ITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYPG-GKPITVKLIFRKEEGRL 378
T E+ G+TE++AK GI +G F S VK+I E RL
Sbjct: 397 YTH---PEVAWVGITEQKAKESGIKYRIGTFGFSANSRAKTNMDADGLVKVIVDAETDRL 453
Query: 379 IGAQIVGGERVWGRIMTLSALA-QMGAKVEDIAYLETAYAPPISPTIDPITVAADMA 434
+G ++G + G ++ + LA + GA ED+A + A+ PT+ T A MA
Sbjct: 454 LGVHMIG--PMAGELIGEATLALEYGASAEDVARVCHAH-----PTLSEATKEAMMA 503
>dbj|BAA82115.1| (AB022919) PsbAa [Rhodopseudomonas palustris]
Length = 403
Score = 84.7 bits (206), Expect = 2e-15
Identities = 74/317 (23%), Positives = 146/317 (45%), Gaps = 15/317 (4%)
Query: 2 RVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTI--EKPEDVI 59
R+V++G+G AG+ A LR + + +IG EP + P P + + ++ +
Sbjct: 7 RIVIVGAGQAGARAAEALRAAGHRGAVTLIGDEP---HPPYERPQLSKKMLLDQQADATF 63
Query: 60 VFPNEFYEKQKIKMMLGVEAKKID-RERKVVITDKGEVPYDKLVLATGSKAF-IPPIKGV 117
+ + + + + G A ID +RK+ ++ ++ +D+L++ATG++ + ++G
Sbjct: 64 IRTTQEWSDLGVTLRTGTRAVTIDLNQRKLALSGGDDIGFDRLLIATGTRPRRLAALEGT 123
Query: 118 ENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEH 177
+ V L+ +DD ++ + + + + ++G G+IGLE A A G EV ++E +
Sbjct: 124 K-VAVHYLRGIDDALTLRPQLIEGH--RVALVGGGVIGLEVAAAALSRGCEVTIIERADD 180
Query: 178 LLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKIGD-ETVEADLVLVATG 236
LLP + + + G + +E+ G ++ + D V+AD+++V G
Sbjct: 181 LLPQIGSPSLIRFAHDMFVKRGAAI---LCKAELSGQQTHSLTLADGRVVDADVIVVGIG 237
Query: 237 VRANVDLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLS-QLGTSAV 295
+LA GL + V + T + A GD AE A+ L + +A
Sbjct: 238 SEPAGELALQIGLAGVQVFVFDARGATECDHVVAAGDVAEQWSAIPRFAWLRLENWANAQ 297
Query: 296 RMAKVAAEHIAGKDVKF 312
A A +AG D ++
Sbjct: 298 NQAIATARAMAGLDSRY 314
>emb|CAC14872.1| (AJ272500) apoptosis inducing factor [Dictyostelium discoideum]
Length = 532
Score = 84.7 bits (206), Expect = 2e-15
Identities = 99/446 (22%), Positives = 188/446 (41%), Gaps = 49/446 (10%)
Query: 2 RVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVF 61
+ V+IG GTA + + + D++A I++I KE + Y L + T K ++V+
Sbjct: 97 KYVIIGGGTAAYHAIDKILENDKEATILLISKEYEVPYQRPPLTKSLWAT--KDDNVVNT 154
Query: 62 ----------PNEFYEKQKI---KMMLGVEAKKIDR----ERKVVITDKGEVPYDKLVLA 104
N YE++ +++ + KK+ E+ V++ D + YDK ++A
Sbjct: 155 LNFSDWSGKKQNLLYEQESAYGNEILQFIRTKKVIDLHIDEKLVLLNDGKLIRYDKCLIA 214
Query: 105 TGSKAFIPPIKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEA--- 161
TG + ++ + T ++++D R++ E + K K V+G G +G E A
Sbjct: 215 TGGEPRQLKFTSTNDKKISTYRTVEDFRKLYEVV-KDGGKHVTVLGGGFLGSELTCAINS 273
Query: 162 -FAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP----V 216
F +++ + +L T+ ++ + + + GV G + +++ N +
Sbjct: 274 NFQDKNIKIDQIFPESGVLSTLFPDYLSKYATEEIIKSGVNVHTGTLIKDVVDNSENGRL 333
Query: 217 EAVKIGDETVEADLVLVATGVRANVDLAKDAGLE---VNRGIVVNEYLQTSDPDIYAIGD 273
+T E D V+VA G+ N ++ K LE +N G VVN LQ + D+Y GD
Sbjct: 334 TVTLNNGKTFETDHVVVAAGIIPNTNVVKSTTLEIDPINGGYVVNPELQ-ARTDLYVAGD 392
Query: 274 CAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDV----KFRPVFNTAITELFDLEIG 329
A D G R + A ++A +++ KD ++P F + +T +G
Sbjct: 393 VASYYDFSLGVRRRVEHHDHARATGEMAGSNMSTKDTPAPYTYQPFFWSDLTP----GVG 448
Query: 330 TFGMTEERAKREGIDVVVGKFRGSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERV 389
+ +K + V TK Y G + + + ++G G
Sbjct: 449 FEAVGNTSSKLKTFSVWEKPSSDETKQSYTKG------NIYYLNDNNNVVGVLCYGN--- 499
Query: 390 WGRIMTLSALAQMGAKVEDIAYLETA 415
+G++ T L +ED+ L+ A
Sbjct: 500 YGKMDTARDLILKRRTIEDLNQLQHA 525
>emb|CAA61894.1| (X89747) outer membrane protein P64k or PM-6 [Neisseria
meningitidis]
Length = 593
Score = 83.5 bits (203), Expect = 4e-15
Identities = 108/369 (29%), Positives = 160/369 (43%), Gaps = 65/369 (17%)
Query: 92 DKGEVPYDKLVLATGSKA----FIPPI-KGVENEGVFTLKSLDDVRRIKEYIGKRNPKKA 146
+K V + ++A GS+ FIP + +++ G LK + P K
Sbjct: 253 EKKIVAFKNCIIAAGSRVTKLPFIPEDPRIIDSSGALALKEV--------------PGKL 298
Query: 147 VVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFG- 205
++IG G+IGLE ++ LG + VVE+++ L+ D+D+ + QK E +RF
Sbjct: 299 LIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-ADRDLVKVWQKQNE-----YRFDN 352
Query: 206 --VGVSEIIGNP--------VEAVKIGDETVEADLVLVATGVRANVDL--AKDAGLEV-N 252
V + P E E D VLVA G N L A+ AG+ V +
Sbjct: 353 IMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTD 412
Query: 253 RGIV-VNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVK 311
RG + V++ ++T+ P IYAIGD + G+ L+ AV VAAE+ AG
Sbjct: 413 RGFIEVDKQMRTNVPHIYAIGD-------IVGQPMLAH---KAVHEGHVAAENCAGHKAY 462
Query: 312 F--RPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGG-KPITVK 368
F R + A T E+ G TE AK G + F + G K
Sbjct: 463 FDARVIPGVAYT---SPEVAWVGETELSAKASGRKITKANFPWAASGRAIANGCDNGFTK 519
Query: 369 LIFRKEEGRLIGAQIVG--GERVWGRIMTLSALAQMGAKVEDIAYLETAYAPPISPTIDP 426
LIF E GR+IG IVG G + G + +MG DI +T + P +
Sbjct: 520 LIFDAETGRIIGGGIVGPNGGDMIGEV---CLAIEMGCDAADIG--KTIHPHPTLG--ES 572
Query: 427 ITVAADMAL 435
I +AA++AL
Sbjct: 573 IGMAAEVAL 581
>emb|CAA72132.1| (Y11262) dihydrolipoamide dehydrogenase [Trypanosoma cruzi]
Length = 477
Score = 83.5 bits (203), Expect = 4e-15
Identities = 101/355 (28%), Positives = 153/355 (42%), Gaps = 51/355 (14%)
Query: 100 KLVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGA 159
K ++ATGS+ P + + V + + R+ PK VVIG G+IGLE
Sbjct: 148 KTIIATGSEPTELPFLPFDEKVVLSSTGALALPRV--------PKTMVVIGGGVIGLELG 199
Query: 160 EAFAKLGMEVLVVELLEHLLPTMLDKDMA-SIVQKNMEEHGVKFRF------GVGVSEII 212
+A+LG EV VVE PT LD+D+ ++V + +KF G + +
Sbjct: 200 SVWARLGAEVTVVEFAPRCAPT-LDEDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSV 258
Query: 213 GNPVEAVKIGDETVEADLVLVATGVR---ANVDLAKDAGLEVNRGIV-VNEYLQTSDPDI 268
VE ETV + +LV+ G R + L K + RG V + ++ +TS PD+
Sbjct: 259 SLEVEGKNGRRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSIPDV 318
Query: 269 YAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEI 328
YAIGD V+D L A AE +AGK A+ E+
Sbjct: 319 YAIGD---VVDKG------PMLAHKAEDEGVACAEILAGKPGHVNYGVIPAVIYTMP-EV 368
Query: 329 GTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGGKPIT-----VKLIFRKEEGRLIGAQI 383
+ G +E+ K+EG+ VGKF + K ++ VK++ K R++G I
Sbjct: 369 ASVGKSEDELKKEGVAYKVGKFPFNANSR----AKAVSTEDGFVKVLVDKATDRILGVHI 424
Query: 384 V---GGERVWGRIMTLSALAQMGAKVEDIAYLETAYAPPISPTIDPITVAADMAL 435
V GE + + + + GA ED+ T +A PT+ A MAL
Sbjct: 425 VCTTAGELIGEACLAM----EYGASSEDVG--RTCHA---HPTMSEALKEACMAL 470
>pir||S42920 dihydrolipoamide dehydrogenase (EC 1.8.1.4) NMB1344 [similarity] -
Neisseria meningitidis (serotype B, strains MMD58 and
B:4:P1.15) >gi|7226588|gb|AAF41719.1| (AE002482)
pyruvate dehydrogenase, E3 component, lipoamide
dehydrogenase [Neisseria meningitidis MC58]
Length = 594
Score = 83.5 bits (203), Expect = 4e-15
Identities = 108/369 (29%), Positives = 160/369 (43%), Gaps = 65/369 (17%)
Query: 92 DKGEVPYDKLVLATGSKA----FIPPI-KGVENEGVFTLKSLDDVRRIKEYIGKRNPKKA 146
+K V + ++A GS+ FIP + +++ G LK + P K
Sbjct: 254 EKKIVAFKNCIIAAGSRVTKLPFIPEDPRIIDSSGALALKEV--------------PGKL 299
Query: 147 VVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFG- 205
++IG G+IGLE ++ LG + VVE+++ L+ D+D+ + QK E +RF
Sbjct: 300 LIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-ADRDLVKVWQKQNE-----YRFDN 353
Query: 206 --VGVSEIIGNP--------VEAVKIGDETVEADLVLVATGVRANVDL--AKDAGLEV-N 252
V + P E E D VLVA G N L A+ AG+ V +
Sbjct: 354 IMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTD 413
Query: 253 RGIV-VNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVK 311
RG + V++ ++T+ P IYAIGD + G+ L+ AV VAAE+ AG
Sbjct: 414 RGFIEVDKQMRTNVPHIYAIGD-------IVGQPMLAH---KAVHEGHVAAENCAGHKAY 463
Query: 312 F--RPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGG-KPITVK 368
F R + A T E+ G TE AK G + F + G K
Sbjct: 464 FDARVIPGVAYT---SPEVAWVGETELSAKASGRKITKANFPWAASGRAIANGCDNGFTK 520
Query: 369 LIFRKEEGRLIGAQIVG--GERVWGRIMTLSALAQMGAKVEDIAYLETAYAPPISPTIDP 426
LIF E GR+IG IVG G + G + +MG DI +T + P +
Sbjct: 521 LIFDAETGRIIGGGIVGPNGGDMIGEV---CLAIEMGCDAADIG--KTIHPHPTLG--ES 573
Query: 427 ITVAADMAL 435
I +AA++AL
Sbjct: 574 IGMAAEVAL 582
>emb|CAC11354.1| (AL445063) dihydrolipoamide dehydrogenase component (E3) related
protein [Thermoplasma acidophilum]
Length = 451
Score = 83.5 bits (203), Expect = 4e-15
Identities = 99/363 (27%), Positives = 174/363 (47%), Gaps = 35/363 (9%)
Query: 71 IKMMLGVEAKKIDRERKVVITDKGEVPY---DKLVLATGSKAFIPPIKGVENEGVFTLKS 127
+K++ G A+ ID V +D G Y +++A+GS+ F+P I G E
Sbjct: 100 LKIIKGT-ARIIDDNTVEVSSDTGTSRYRSSSAIIIASGSETFVPKIPGAELAWTSA--- 155
Query: 128 LDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDM 187
D+ +K + K+ PK +IG G IG+E A + LG++V V+E+L+ ++ TM D+ M
Sbjct: 156 --DLYSLKPKV-KKLPKSIAIIGGGYIGMETASFMSILGVKVTVIEMLDRVMSTM-DEAM 211
Query: 188 ASIVQKNMEEHGVKFRFGVGVSEIIGN--PVEAVKIGD-ETVEADLVLVATG-VRANVDL 243
+ + + ++ V E G+ V K G+ E++E + VL+A G V +
Sbjct: 212 VDKLLPLLPKMDIRTASPVQSIERNGSMYHVNFGKEGEKESIEVEAVLMAVGRVPVFPEG 271
Query: 244 AKDAGLEVNR-GIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAA 302
D G+E +R GI VN +QT+ +IYA GD V G ++ L +A R + VAA
Sbjct: 272 IDDLGIEHDRHGIKVNMAMQTNIKNIYATGD-------VNG---ITPLFHAAKRQSLVAA 321
Query: 303 EHIAGKDVK---FRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYY 359
+I +V F P+ + T ++ G+ +A++ GI+ + ++
Sbjct: 322 NNIMANNVPIDYFDPL-SVPFTVYTIPQMAYVGILPSQARKMGIEYLETDYQIEKDALAQ 380
Query: 360 PGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALA-QMGAKVEDIAYLETAYAP 418
+ IF + ++IG ++G + G ++ ALA G + D+A E A+
Sbjct: 381 INNEMFGEIRIFTDKRMKVIGGYVIGNDA--GNVINEIALAVSKGLSLRDLA--EMAHQH 436
Query: 419 PIS 421
P++
Sbjct: 437 PMT 439
>sp|P90597|DLDH_TRYCR DIHYDROLIPOAMIDE DEHYDROGENASE >gi|1841947|emb|CAA61483.1| (X89112)
dihydrolipoamide dehydrogenase [Trypanosoma cruzi]
Length = 477
Score = 83.1 bits (202), Expect = 6e-15
Identities = 101/355 (28%), Positives = 153/355 (42%), Gaps = 51/355 (14%)
Query: 100 KLVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGA 159
K ++ATGS+ P + + V + + R+ PK VVIG G+IGLE
Sbjct: 148 KTIIATGSEPTELPFLPFDEKVVLSSTGALALPRV--------PKTMVVIGGGVIGLELG 199
Query: 160 EAFAKLGMEVLVVELLEHLLPTMLDKDMA-SIVQKNMEEHGVKFRF------GVGVSEII 212
+A+LG +V VVE PT LD+D+ ++V + +KF G + +
Sbjct: 200 SVWARLGAKVTVVEFAPRCAPT-LDEDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSV 258
Query: 213 GNPVEAVKIGDETVEADLVLVATGVR---ANVDLAKDAGLEVNRGIV-VNEYLQTSDPDI 268
VE ETV + +LV+ G R + L K + RG V + ++ +TS PD+
Sbjct: 259 SLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSIPDV 318
Query: 269 YAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEI 328
YAIGD V+D L A AE +AGK A+ E+
Sbjct: 319 YAIGD---VVDKG------PMLAHKAEDEGVACAEILAGKPGHVNYGVIPAVIYTMP-EV 368
Query: 329 GTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGGKPIT-----VKLIFRKEEGRLIGAQI 383
+ G +EE K+EG+ VGKF + K ++ VK++ K R++G I
Sbjct: 369 ASVGKSEEELKKEGVAYKVGKFPFNANSR----AKAVSTEDGFVKVLVDKATDRILGVHI 424
Query: 384 V---GGERVWGRIMTLSALAQMGAKVEDIAYLETAYAPPISPTIDPITVAADMAL 435
V GE + + + + GA ED+ T +A PT+ A MAL
Sbjct: 425 VCTTAGELIGEACLAM----EYGASSEDVG--RTCHA---HPTMSEALKEACMAL 470
>pir||T05157 NADH dehydrogenase (ubiquinone) chain NDI1 homolog F18E5.110 -
Arabidopsis thaliana >gi|3080393|emb|CAA18713.1|
(AL022603) NADH dehydrogenase like protein [Arabidopsis
thaliana] >gi|7268946|emb|CAB81256.1| (AL161555) NADH
dehydrogenase like protein [Arabidopsis thaliana]
Length = 478
Score = 82.7 bits (201), Expect = 7e-15
Identities = 90/326 (27%), Positives = 148/326 (44%), Gaps = 57/326 (17%)
Query: 2 RVVVIGSGTAGSNFALFLRKLDRKA-EIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
+VV++G+G AG++F L+ L+ + E+ VI ++P LP V GT+E V
Sbjct: 45 KVVLLGTGWAGASF---LKTLNNSSYEVQVISPRNYFAFTPL-LPSVTCGTVEARSVVEP 100
Query: 61 FPNEFYEKQKIKM-MLGVEAKKIDRERKVV-------ITDKG----EVPYDKLVLATGSK 108
N KQ ++M L E KID K V + KG +V YD LV+ATG++
Sbjct: 101 IRN-IARKQNVEMSFLEAECFKIDPGSKKVYCRSKQGVNSKGKKEFDVDYDYLVIATGAQ 159
Query: 109 AFIPPIKGVENEGVFTLKSLDDVRRIKEYI---------------GKRNPKKAVVIGAGL 153
+ I GVE E LK ++D +RI+ + ++ VV+G G
Sbjct: 160 SNTFNIPGVE-ENCHFLKEVEDAQRIRSTVIDSFEKASLPGLNEQERKRMLHFVVVGGGP 218
Query: 154 IGLEGAEAF--------------AKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHG 199
G+E A AK +++ ++E +H+L TM DK + ++ G
Sbjct: 219 TGVEFASELHDFVNEDLVKLYPKAKNLVQITLLEAADHIL-TMFDKRITEFAEEKFTRDG 277
Query: 200 VKFRFGVGVSEIIGNPVEA-VKIGD-ETVEADLVLVATGVRAN---VDLAKDAG--LEVN 252
+ + G V ++ + A K G+ T+ +++ +TG+ D K G
Sbjct: 278 IDVKLGSMVVKVNDKEISAKTKAGEVSTIPYGMIVWSTGIGTRPVIKDFMKQIGQVSSQR 337
Query: 253 RGIVVNEYLQTSDPD-IYAIGDCAEV 277
R + +E+L+ D IYA+GDCA +
Sbjct: 338 RALATDEWLRVEGCDNIYALGDCATI 363
>pir||G81847 dihydrolipoamide dehydrogenase (EC 1.8.1.4) NMA1556 [similarity] -
Neisseria meningitidis (group A, strain Z2491)
>gi|7380197|emb|CAB84783.1| (AL162756) dihydrolipoamide
dehydrogenase (E3 component of pyruvate and
2-oxoglutarate dehydrogenase complexes) [Neisseria
meningitidis Z2491]
Length = 594
Score = 82.7 bits (201), Expect = 7e-15
Identities = 107/369 (28%), Positives = 159/369 (42%), Gaps = 65/369 (17%)
Query: 92 DKGEVPYDKLVLATGSKA----FIPPIKGV-ENEGVFTLKSLDDVRRIKEYIGKRNPKKA 146
+K V + ++A GS+ FIP + ++ G LK + P K
Sbjct: 254 EKKIVAFKNCIIAAGSRVTKLPFIPEDPRIFDSSGALALKEV--------------PGKL 299
Query: 147 VVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFG- 205
++IG G+IGLE ++ LG + VVE+++ L+ D+D+ + QK E +RF
Sbjct: 300 LIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-ADRDLVKVWQKQNE-----YRFDN 353
Query: 206 --VGVSEIIGNP--------VEAVKIGDETVEADLVLVATGVRANVDL--AKDAGLEV-N 252
+ + P E E D VLVA G N L A+ AG+ V +
Sbjct: 354 IMINTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTD 413
Query: 253 RGIV-VNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVK 311
RG + V++ ++T+ P IYAIGD + G+ L+ AV VAAE+ AG
Sbjct: 414 RGFIEVDKQMRTNVPHIYAIGD-------IVGQPMLAH---KAVHEGHVAAENCAGHKAY 463
Query: 312 F--RPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGG-KPITVK 368
F R + A T E+ G TE AK G + F + G K
Sbjct: 464 FDARVIPGVAYT---SPEVAWVGETELSAKASGRKITKANFPWAASGRAIANGCDNGFTK 520
Query: 369 LIFRKEEGRLIGAQIVG--GERVWGRIMTLSALAQMGAKVEDIAYLETAYAPPISPTIDP 426
LIF E GR+IG IVG G + G + +MG DI +T + P +
Sbjct: 521 LIFDAETGRIIGGGIVGPNGGDMIGEV---CLAIEMGCDAADIG--KTIHPHPTLG--ES 573
Query: 427 ITVAADMAL 435
I +AA++AL
Sbjct: 574 IGMAAEVAL 582
>pir||JC4793 dihydrolipoamide dehydrogenase (EC 1.8.1.4) - Klebsiella pneumoniae
>gi|945058|gb|AAB40885.1| (U30887) dihydrolipoamide
dehydrogenase [Klebsiella pneumoniae]
Length = 465
Score = 82.3 bits (200), Expect = 1e-14
Identities = 94/355 (26%), Positives = 158/355 (44%), Gaps = 42/355 (11%)
Query: 99 DKLVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEG 158
D ++LATG++ P + E ++T + K PK ++IG+G IG+E
Sbjct: 137 DHVILATGARPRALPGIAPDGEHIWTY--------FEALRPKLLPKSLLIIGSGAIGVEF 188
Query: 159 AEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEI----IGN 214
A + LG +V +VEL +LP + D ++++ V+K+ E+ G++ V+++ G
Sbjct: 189 ASLYNDLGCKVTLVELASQILP-VEDAEVSAAVRKSFEKRGIQIHTQTLVTQVQLTDTGV 247
Query: 215 PVEAVKIGDE-TVEADLVLVATGVRANV-DLAKDA-GLEVNRGIV-VNEYLQTSDPDIYA 270
G E + + + VL+A GV+ N+ DL + G+E++RG + + +T+ +YA
Sbjct: 248 RCTLNNTGGEYSQDVERVLLAVGVQPNIEDLGLETLGVELDRGFIKTDAACRTNVFGLYA 307
Query: 271 IGDCAEVIDAVTGKRTLSQLGTSAVR-MAKVAAEHIAGKDVKFRPVFNTAITELFDLEIG 329
IGD V S G V +A V H +D + P A ++
Sbjct: 308 IGD---VAGPPCLAHKASHEGVLCVETLAGVEGAHPLDRD--YVPGCTYARP-----QVA 357
Query: 330 TFGMTEERAKREGIDVVVGKFRGSTKPEYYPGGKPIT-------VKLIFRKEEGRLIGAQ 382
+ G+TE A G + +GKF Y GK + VK IF E G L+GA
Sbjct: 358 SLGLTESTALARGRPIRIGKF------SYQSNGKALVSGETEGFVKTIFDAETGELLGAH 411
Query: 383 IVGGERVWGRIMTLSALAQMGAKVEDIAYLETAYAPPISPTIDPITVAADMALRK 437
+VG + V +I + A E + + A+ + I A D L +
Sbjct: 412 MVGAQ-VTEQIQGFGIARHLEATDESLLSMIFAHPTLSEAMHESILAACDQPLHQ 465
>pir||JC4089 3alpha,7alpha,12alpha-trihydroxycholestan-26-al 26-oxidoreductase
(EC 1.2.1.40) - Saccharopolyspora erythraea
>gi|603923|gb|AAA74473.1| (L38646) NADH-ferredoxin
oxidoreductase [Saccharopolyspora erythraea]
Length = 456
Score = 82.3 bits (200), Expect = 1e-14
Identities = 79/282 (28%), Positives = 131/282 (46%), Gaps = 24/282 (8%)
Query: 143 PKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKF 202
P+K VV+G G+IG+E A + G EV +VE L HL+P D+ ++ +++ + G+KF
Sbjct: 168 PEKVVVLGGGVIGVEFASVWRSFGAEVTIVEALPHLVPNE-DEFISKRLEREFRKRGIKF 226
Query: 203 RFGV---GVSEIIGNPVEAVKIGDETVEADLVLVATGVRANVDLA--KDAGLEVNRGIV- 256
+ V G + ++ GD+ +ADL+LVA G N ++AG+ + RG V
Sbjct: 227 KTEVKFTGAQQSAEGVSVRLENGDQ-YDADLLLVAVGRGPNTAALGFEEAGVTMERGFVR 285
Query: 257 VNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVF 316
++ L+TS +YA+GD + QL + AE IAG + +
Sbjct: 286 TDDRLRTSVDGVYAVGDIVPGL----------QLAHRGFQQGIFVAEEIAGLNPQAIDES 335
Query: 317 NTAITELFDLEIGTFGMTEERAKRE--GIDVVVGKFRGSTKPEYYPGGKPITVKLIFRKE 374
E+ + G+TE AK + ++ G+ K + VKL+ R
Sbjct: 336 GIPRVTYSHPEVASVGLTEAAAKEQYGSVETFNYDLAGNGKSQILKTSG--AVKLV-RPT 392
Query: 375 EGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYLETAY 416
+G ++G +V G+RV I + A ED+A L A+
Sbjct: 393 DGPVVGLHMV-GDRVGELIGEAQLIYNWEALPEDVAPLVHAH 433
>emb|CAA59171.1| (X84696) outer mambrane protein P64k or PM-6 [Neisseria
meningitidis]
Length = 594
Score = 81.9 bits (199), Expect = 1e-14
Identities = 108/369 (29%), Positives = 159/369 (42%), Gaps = 65/369 (17%)
Query: 92 DKGEVPYDKLVLATGSKA----FIPPI-KGVENEGVFTLKSLDDVRRIKEYIGKRNPKKA 146
+K V ++A GS+ FIP + +++ G LK + P K
Sbjct: 254 EKKIVAVKNCIIAAGSRVTKLPFIPEDPRIIDSSGALALKEV--------------PGKL 299
Query: 147 VVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFG- 205
++IG G+IGLE ++ LG + VVE+++ L+ D+D+ + QK E +RF
Sbjct: 300 LIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-ADRDLVKVWQKQNE-----YRFDN 353
Query: 206 --VGVSEIIGNP--------VEAVKIGDETVEADLVLVATGVRANVDL--AKDAGLEV-N 252
V + P E E D VLVA G N L A+ AG+ V +
Sbjct: 354 IMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTD 413
Query: 253 RGIV-VNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVK 311
RG + V++ ++T+ P IYAIGD + G+ L+ AV VAAE+ AG
Sbjct: 414 RGFIEVDKQMRTNVPHIYAIGD-------IVGQPMLAH---KAVHEGHVAAENCAGHKAY 463
Query: 312 F--RPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGG-KPITVK 368
F R + A T E+ G TE AK G + F + G K
Sbjct: 464 FDARVIPGVAYT---SPEVAWVGETELSAKASGRKITKANFPWAASGRAIANGCDNGFTK 520
Query: 369 LIFRKEEGRLIGAQIVG--GERVWGRIMTLSALAQMGAKVEDIAYLETAYAPPISPTIDP 426
LIF E GR+IG IVG G + G + +MG DI +T + P +
Sbjct: 521 LIFDAETGRIIGGGIVGPNGGDMIGEV---CLAIEMGCDAADIG--KTIHPHPTLG--ES 573
Query: 427 ITVAADMAL 435
I +AA++AL
Sbjct: 574 IGMAAEVAL 582
>emb|CAA72131.1| (Y11261) dihydrolipoamide dehydrogenase [Trypanosoma cruzi]
Length = 477
Score = 81.9 bits (199), Expect = 1e-14
Identities = 101/355 (28%), Positives = 152/355 (42%), Gaps = 51/355 (14%)
Query: 100 KLVLATGSKAFIPPIKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGA 159
K ++ATGS+ P + + V + + R+ PK VVIG G+IGLE
Sbjct: 148 KTIIATGSEPTELPFLPFDEKVVLSSTGALALPRV--------PKTMVVIGGGVIGLELG 199
Query: 160 EAFAKLGMEVLVVELLEHLLPTMLDKDMA-SIVQKNMEEHGVKFRF------GVGVSEII 212
+A+LG EV VVE PT LD+D+ ++V + +KF G +
Sbjct: 200 SVWARLGAEVTVVEFAPRCAPT-LDEDVTNALVGALAKNEKMKFMTSTKVVGGTNNGGSV 258
Query: 213 GNPVEAVKIGDETVEADLVLVATGVR---ANVDLAKDAGLEVNRGIV-VNEYLQTSDPDI 268
VE ETV + +LV+ G R + L K + RG V + ++ +TS PD+
Sbjct: 259 SLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSIPDV 318
Query: 269 YAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEI 328
YAIGD V+D L A AE +AGK A+ E+
Sbjct: 319 YAIGD---VVDKG------PMLAHKAEDEGVACAEILAGKPGHVNYGVIPAVIYTMP-EV 368
Query: 329 GTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGGKPIT-----VKLIFRKEEGRLIGAQI 383
+ G +E+ K+EG+ VGKF + K ++ VK++ K R++G I
Sbjct: 369 ASVGKSEDELKKEGVAYKVGKFPFNANSR----AKAVSTEDGFVKVLVDKATDRILGVHI 424
Query: 384 V---GGERVWGRIMTLSALAQMGAKVEDIAYLETAYAPPISPTIDPITVAADMAL 435
V GE + + + + GA ED+ T +A PT+ A MAL
Sbjct: 425 VCTTAGELIGEACLAM----EYGASSEDVG--RTCHA---HPTMSEALKEACMAL 470
>emb|CAA57206.1| (X81450) outer membrane protein P64k or PM-6 [Neisseria
meningitidis]
Length = 593
Score = 81.5 bits (198), Expect = 2e-14
Identities = 108/369 (29%), Positives = 160/369 (43%), Gaps = 65/369 (17%)
Query: 92 DKGEVPYDKLVLATGSKA----FIPPI-KGVENEGVFTLKSLDDVRRIKEYIGKRNPKKA 146
+K V + ++A GS+ FIP + +++ G LK + P K
Sbjct: 253 EKKIVAFKNCIIAAGSRVTKLPFIPEDPRIIDSSGALALKEV--------------PGKL 298
Query: 147 VVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFG- 205
++IGAG+IGLE ++ LG + VVE+++ L+ D+D+ + QK E +RF
Sbjct: 299 LIIGAGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-ADRDLVKVWQKQNE-----YRFDN 352
Query: 206 --VGVSEIIGNP--------VEAVKIGDETVEADLVLVATGVRANVDL--AKDAGLEV-N 252
V + P E E D VLVA G N L A+ AG+ V +
Sbjct: 353 IMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTD 412
Query: 253 RGIV-VNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVK 311
RG + V++ ++T+ P IYAI D + G+ L+ AV VAAE+ AG
Sbjct: 413 RGFIEVDKQMRTNVPHIYAIVD-------IVGQPMLAH---KAVHEGHVAAENCAGHKAY 462
Query: 312 F--RPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGG-KPITVK 368
F R + A T E+ G TE AK G + F + G K
Sbjct: 463 FDARVIPGVAYT---SPEVAWVGETELSAKASGRKITKANFPWAASGRAIANGCDNGFTK 519
Query: 369 LIFRKEEGRLIGAQIVG--GERVWGRIMTLSALAQMGAKVEDIAYLETAYAPPISPTIDP 426
LIF E GR+IG IVG G + G + +MG DI +T + P +
Sbjct: 520 LIFDAETGRIIGGGIVGPNGGDMIGEV---CLAIEMGCDAADIG--KTIHPHPTLG--ES 572
Query: 427 ITVAADMAL 435
I +AA++AL
Sbjct: 573 IGMAAEVAL 581
>emb|CAB65609.1| (AL136078) dihydrolipoamide dehydrogenase, mitochondrial precursor
(EC 1.8.1.4) [Schizosaccharomyces pombe]
Length = 511
Score = 81.5 bits (198), Expect = 2e-14
Identities = 107/381 (28%), Positives = 171/381 (44%), Gaps = 71/381 (18%)
Query: 99 DKLVLATGSKAFIPP----IKGVENEGVFTLKSLD-----------------DVRRIKEY 137
+K+ A G+ +FI P +KG++ T+K+ + D ++I
Sbjct: 148 NKVEYAKGTGSFIDPQTLSVKGIDGAADQTIKAKNFIIATGSEVKPFPGVTIDEKKIVSS 207
Query: 138 IGKRN----PKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQK 193
G + PKK V+G G+IGLE +++LG EV VVE L + M D D++ + +
Sbjct: 208 TGALSLSEVPKKMTVLGGGIIGLEMGSVWSRLGAEVTVVEFLPAVGGPM-DADISKALSR 266
Query: 194 NMEEHGVKFRFGVGV--SEIIGNPVEAVKIGD------ETVEADLVLVATGVRANVDLAK 245
+ + G+KF+ + +++ G+ VE V+I + ET + D++LVA G V +
Sbjct: 267 IISKQGIKFKTSTKLLSAKVNGDSVE-VEIENMKNNKRETYQTDVLLVAIG---RVPYTE 322
Query: 246 DAGLE--------VNRGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRM 297
GL+ NR I+ +EY +T+ P I IG DA G L A
Sbjct: 323 GLGLDKLGISMDKSNRVIMDSEY-RTNIPHIRVIG------DATLG----PMLAHKAEDE 371
Query: 298 AKVAAEHIAGKD--VKFRPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTK 355
A E+IA V + + T E+ G+TE++AK GI +G F S
Sbjct: 372 GIAAVEYIAKGQGHVNYNCIPAVMYTH---PEVAWVGITEQKAKESGIKYRIGTFPFSAN 428
Query: 356 PEYYPG-GKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALA-QMGAKVEDIAYLE 413
VK+I E RL+G ++G + G ++ + LA + GA ED+A +
Sbjct: 429 SRAKTNMDADGLVKVIVDAETDRLLGVHMIG--PMAGELIGEATLALEYGASAEDVARVC 486
Query: 414 TAYAPPISPTIDPITVAADMA 434
A+ PT+ T A MA
Sbjct: 487 HAH-----PTLSEATKEAMMA 502
>emb|CAA61895.1| (X89748) outer membrane protein P64k or PM-6 [Neisseria
meningitidis]
Length = 594
Score = 81.1 bits (197), Expect = 2e-14
Identities = 98/316 (31%), Positives = 140/316 (44%), Gaps = 46/316 (14%)
Query: 140 KRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHG 199
K P K ++IG G+IGLE ++ LG + VVE+++ L+ D+D+ + QK E
Sbjct: 293 KEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQG-ADRDLVKVWQKQNE--- 348
Query: 200 VKFRFG---VGVSEIIGNP--------VEAVKIGDETVEADLVLVATGVRANVDL--AKD 246
+RF V + P E E D VLVA G N L A+
Sbjct: 349 --YRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEK 406
Query: 247 AGLEV-NRGIV-VNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEH 304
AG+ V +RG + V++ ++T+ P IYAIGD + G+ L+ AV VAAE+
Sbjct: 407 AGVAVTDRGFIEVDKQMRTNVPHIYAIGD-------IVGQPMLAH---KAVHEGHVAAEN 456
Query: 305 IAGKDVKF--RPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGG 362
AG F R + A T E+ G TE AK G + F + G
Sbjct: 457 CAGHKAYFDARVIPGVAYT---SPEVAWVGETELSAKASGRKITKANFPWAASGRAIANG 513
Query: 363 -KPITVKLIFRKEEGRLIGAQIVG--GERVWGRIMTLSALAQMGAKVEDIAYLETAYAPP 419
KLIF E GR+IG IVG G + G + +MG DI +T + P
Sbjct: 514 CDNGFTKLIFDAETGRIIGGGIVGPNGGDMIGEV---CLAIEMGCDAADIG--KTIHPHP 568
Query: 420 ISPTIDPITVAADMAL 435
+ I +AA++AL
Sbjct: 569 TLG--ESIGMAAEVAL 582
>pir||D82668 dihydrolipoamide dehydrogenase XF1548 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9106589|gb|AAF84357.1|AE003984_8 (AE003984)
dihydrolipoamide dehydrogenase [Xylella fastidiosa]
Length = 490
Score = 81.1 bits (197), Expect = 2e-14
Identities = 99/359 (27%), Positives = 153/359 (42%), Gaps = 56/359 (15%)
Query: 101 LVLATGSKAFIPPIKGVENEGVF-TLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGA 159
++LA GS + P + E + + +LD ++ PK+ VIGAG+IGLE
Sbjct: 159 VILAAGSDSVELPFATFDGETIVDNIGALDFIKV---------PKRLAVIGAGVIGLELG 209
Query: 160 EAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVS---------- 209
+ +LG EV ++E + L +D D+A K ++ G+ + G VS
Sbjct: 210 SVWKRLGAEVTILEAMPDFL-AAVDADVAKTAAKEFKQQGLDIKLGAKVSRTEISSKNNK 268
Query: 210 -EIIGNPVEAVKIGDETVEADLVLVATGVRANVD--LAKDAGLEVN-RG-IVVNEYLQTS 264
E+I +A G +T D +LVA G +A LA G+++N RG IVV+E+ T
Sbjct: 269 KEVIVTYTDA--SGKQTFTVDKLLVAVGRKAATKGLLADGTGVQLNERGQIVVDEHCHTG 326
Query: 265 DPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAG--KDVKFRPVFNTAITE 322
++AIGDC V G L AE IAG V F + TE
Sbjct: 327 VDGVWAIGDC------VRG----PMLAHKGFEEGIAVAELIAGLPGHVNFETIPWVIYTE 376
Query: 323 LFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGGKPI-TVKLIFRKEEGRLIGA 381
EI G TE+ K I G F + +P VK++ E R++G
Sbjct: 377 ---PEIAWVGKTEQELKANNIPYKAGSFPFAAVGRAVAMAEPSGFVKVLAHAETDRVLGL 433
Query: 382 QIVG---GERVWGRIMTLSALAQMGAKVEDIAYLETAYAPPISPTIDPITVAADMALRK 437
++G E V ++ + + +D+A + A+ PT+ A MA+ K
Sbjct: 434 HLIGVNVSELVHEGVLAM----EFSGSADDLARICHAH-----PTLSEAIHDAAMAVSK 483
>gb|AAD56918.1|AF180145_10 (AF180145) NADH dehydrogenase [Zymomonas mobilis]
Length = 381
Score = 80.4 bits (195), Expect = 4e-14
Identities = 96/350 (27%), Positives = 149/350 (42%), Gaps = 54/350 (15%)
Query: 2 RVVVIGSGTAGSNFALFL-RKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
R+VV+G G G L + ++A++I++ + PT + P V +G ++ D +
Sbjct: 9 RIVVVGGGAGGLQLVRALGERFGKEADVILVDRSPTHVWKPL-FHEVATGALDADLDEVS 67
Query: 61 FPNEFYEKQKIKMMLGVEAKKIDRERKVVI------------TDKGEVPYDKLVLATGSK 108
+ ++ K + + IDR+ +I +D+ + YD LVLA GS
Sbjct: 68 Y--RYHGKHWGYHYVRGTLEDIDRKNHEIILEPLVDEEGHKISDQERLRYDYLVLALGSV 125
Query: 109 AFIPPIKGVENEGVFTLKSLDDVRRIKEYI---------------GKRNPKKAVVIGAGL 153
A GV +F L S R +E++ G P + VIGAG
Sbjct: 126 ANDFNTPGVRENCLF-LDSRAQADRFREHLFDACASASRTMIAQPGMEKPVRVTVIGAGA 184
Query: 154 IGLE---------------GAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEH 198
G+E G E F M+V +VE +L L + MA ++
Sbjct: 185 TGVELSAELYNTAIELGNFGLEKFGANCMQVTLVEAAPRILAP-LPEFMAEDAHTVLQRL 243
Query: 199 GVKFRFGVGVSEIIGNPVEAVKIGDETVEADLVLVATGVRANVDLAKDAGLEVNRG--IV 256
GV + V E G K G +T+E+D+ L A GV+A L+K GLEV R I+
Sbjct: 244 GVDIKTNTMVVEA-GEGFIKTKDG-QTIESDIQLWAAGVKAPDFLSKVEGLEVARSNQII 301
Query: 257 VNEYLQ-TSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHI 305
V LQ T+D I+A+GDC +R + +A +MA E+I
Sbjct: 302 VKPTLQSTTDDRIFAMGDCCS-CKLPEAERPVPPRAQAAHQMADTVFENI 350
>sp|P77212|YKGC_ECOLI PROBABLE PYRIDINE NUCLEOTIDE-DISULFIDE OXIDOREDUCTASE IN EAEH-BETA
INTERGENIC REGION >gi|7431863|pir||H64756 probable
mercury(II) reductase (EC 1.16.1.1) - Escherichia coli
>gi|1657503|gb|AAB18031.1| (U73857) similar to S. aureus
mercury(II) reductase [Escherichia coli]
>gi|1786495|gb|AAC73407.1| (AE000137) putative
oxidoreductase [Escherichia coli K12]
Length = 450
Score = 79.6 bits (193), Expect = 6e-14
Identities = 95/375 (25%), Positives = 168/375 (44%), Gaps = 51/375 (13%)
Query: 2 RVVVIGSGTAGSNFALFLRKLDRKAEIIV------------IGKEPTMQYSPCALPHV-I 48
+ V+IG G AG A+ L K + +I IG PT A H
Sbjct: 14 QAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDF 73
Query: 49 SGTIEKPEDVIVFP-----NEFYEKQKIKMMLGVEAKKIDRERKVVITDKG--EVPYDKL 101
I++ +V+ F + + I ++ G +A+ I+ V +G E+ +K+
Sbjct: 74 VRAIQRKNEVVNFLRNKNFHNLADMPNIDVIDG-QAEFINNHSLRVHRPEGNLEIHGEKI 132
Query: 102 VLATGSKAFIPPIKGVENE-GVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAE 160
+ TG++ +PPI G+ GV+ L +++ + ++G ++G G IG+E A
Sbjct: 133 FINTGAQTVVPPIPGITTTPGVYDSTGLLNLKELPGHLG--------ILGGGYIGVEFAS 184
Query: 161 AFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVK 220
FA G +V ++E LP D+D+A + + + GV V E I + V+
Sbjct: 185 MFANFGSKVTILEAASLFLPRE-DRDIADNIATILRDQGVDIILNAHV-ERISHHENQVQ 242
Query: 221 IGDETVE--ADLVLVATGVR-ANVDL-AKDAGLEVNR--GIVVNEYLQTSDPDIYAIGDC 274
+ E + D +L+A+G + A L ++AG+ VN IVV++ L T+ +I+A+GD
Sbjct: 243 VHSEHAQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKRLHTTADNIWAMGD- 301
Query: 275 AEVIDAVTGKRTLSQLGTSAVRMAK--VAAEHIAGKDVKFRPVFNTAITELFDLEIGTFG 332
VTG + + R+ + + E D + ++ +T + G
Sbjct: 302 ------VTGGLQFTYISLDDYRIVRDELLGEGKRSTDDRKNVPYSVFMTP----PLSRVG 351
Query: 333 MTEERAKREGIDVVV 347
MTEE+A+ G D+ V
Sbjct: 352 MTEEQARESGADIQV 366
>emb|CAA62435.1| (X90938) outer membrane protein P64k or PM-6 [Neisseria
meningitidis]
Length = 594
Score = 79.2 bits (192), Expect = 8e-14
Identities = 106/369 (28%), Positives = 158/369 (42%), Gaps = 65/369 (17%)
Query: 92 DKGEVPYDKLVLATGSKA----FIPPI-KGVENEGVFTLKSLDDVRRIKEYIGKRNPKKA 146
+K V + ++A GS+ FIP + +++ G LK + P K
Sbjct: 254 EKKIVAFKNCIIAAGSRVTKLPFIPEDPRIIDSSGALALKEV--------------PGKL 299
Query: 147 VVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFG- 205
++IG G+IGLE ++ LG + VV +++ L+ D+D+ + QK E +RF
Sbjct: 300 LIIGGGIIGLEMGTVYSTLGSRLDVVGMMDGLMQG-ADRDLVKVWQKQNE-----YRFDN 353
Query: 206 --VGVSEIIGNP--------VEAVKIGDETVEADLVLVATGVRANVDL--AKDAGLEV-N 252
V + P E E D VLVA G N L A+ AG+ V +
Sbjct: 354 IMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTD 413
Query: 253 RGIV-VNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGKDVK 311
RG + V++ ++T+ P IYAIGD + G+ L+ AV VAAE+ G
Sbjct: 414 RGFIEVDKQMRTNVPHIYAIGD-------IVGQPMLAH---KAVHEGHVAAENCVGHKAY 463
Query: 312 F--RPVFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKFRGSTKPEYYPGG-KPITVK 368
F R + A T E+ G TE AK G + F + G K
Sbjct: 464 FDARVIPGVAYT---SPEVAWVGETELSAKASGRKITKANFPWAASGRAIANGCDNGFTK 520
Query: 369 LIFRKEEGRLIGAQIVG--GERVWGRIMTLSALAQMGAKVEDIAYLETAYAPPISPTIDP 426
LIF E GR+IG IVG G + G + +MG DI +T + P +
Sbjct: 521 LIFDAETGRIIGGGIVGPNGGDMIGEV---CLAIEMGCDAADIG--KTIHPHPTLG--ES 573
Query: 427 ITVAADMAL 435
I +AA++AL
Sbjct: 574 IGMAAEVAL 582
>gb|AAB09032.1| (U51329) nitrite reductase [Aspergillus fumigatus]
Length = 1110
Score = 78.0 bits (189), Expect = 2e-13
Identities = 59/173 (34%), Positives = 87/173 (50%), Gaps = 11/173 (6%)
Query: 2 RVVVIGSGTAGSNFALFLRKLD---RKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDV 58
++V++G G +F + K D RK +I+VIG+EP + Y+ L K ED+
Sbjct: 45 KIVIVGLGMVAISFIEKIVKQDAERRKYDIVVIGEEPHIGYNRVGLSSFFEH--RKIEDL 102
Query: 59 IVFPNEFYEKQKIKMM---LGVEAKKIDRERKVVITDKGEV-PYDKLVLATGSKAFIPP- 113
+ P E+Y K + L + I ERK V T G+V PYD LVLATGS A +P
Sbjct: 103 YLNPKEWYGSFKDRSFDYHLNTKVTDIFPERKTVRTSTGDVIPYDILVLATGSDAVLPTH 162
Query: 114 IKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVI-GAGLIGLEGAEAFAKL 165
G +G+F +++ D+ R+ E+ K + AV GLE A+A L
Sbjct: 163 TPGYNAKGIFVYRTIQDLERLIEFASKHKGETAVTCRREAWFGLEAAKAMKDL 215
>pir||T34726 probable dehydrogenase - Streptomyces coelicolor
>gi|3861428|emb|CAA22033.1| (AL033505) putative
dehydrogenase [Streptomyces coelicolor A3(2)]
Length = 629
Score = 78.0 bits (189), Expect = 2e-13
Identities = 89/340 (26%), Positives = 153/340 (44%), Gaps = 46/340 (13%)
Query: 2 RVVVIGSGTAGSNFALFLRKLDR-KAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
R+V++G+G AG A L +L R +A+I ++ Y P LP V +G +E +
Sbjct: 5 RIVIVGAGFAGYRTARTLSRLTRHQADITLLNPTDYFLYLPL-LPQVAAGILEPRRVSVS 63
Query: 61 FPNEFYEKQKIKMMLGVEAKKIDRERKVVITD-----KGEVPYDKLVLATGSKAFIPPIK 115
++++LG EA ID + + V +G + YD+LVLA GS + PI
Sbjct: 64 LSGTL---PHVRLVLG-EADGIDLDGRTVHYTGPEGGEGTLAYDRLVLAAGSVNKLLPIP 119
Query: 116 GVENEGVFTLKSLDDVRRIKEYIGKRNPKKA--------------VVIGAGLIGLEGAEA 161
GV E + L + +++++ ++ A VV+GAG G E A
Sbjct: 120 GVA-EHAHGFRGLPEALYLRDHVTRQVELAAAADDRAECAARCTFVVVGAGYTGTEVAAH 178
Query: 162 FA------------KLGMEV--LVVELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVG 207
A + GM +++++ ++P M D+ ++ ++ + + GV R G
Sbjct: 179 GAMYTDAQVRRHPMRTGMRPRWMLLDVAPRVMPEM-DERLSRTAERVLRQRGVDVRMGTS 237
Query: 208 VSEIIGNPVEAVKIGDETVEADLVLVATGVRANVDLAKDAGLEVNRG-IVVNEYLQT-SD 265
V E + V V TV+ ++ GVR + L + GL + RG ++V+ +LQ
Sbjct: 238 VKEATHDGV--VLTDGSTVDTRTLVWCVGVRPD-PLVESLGLPMERGRLLVDPHLQVPGR 294
Query: 266 PDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHI 305
P+++A GD A V D + A R KV A ++
Sbjct: 295 PELFACGDVAAVPDLNQPGQYTPMTAQHAWRHGKVCAHNV 334
>pir||B81882 probable dihydrolipoamide dehydrogenase (EC 1.8.1.4) E3 component
NMA1151 [imported] - Neisseria meningitidis (group A
strain Z2491) >gi|7379844|emb|CAB84413.1| (AL162755)
putative dihydrolipoamide dehydrogenase E3 component
[Neisseria meningitidis Z2491]
Length = 477
Score = 76.5 bits (185), Expect = 6e-13
Identities = 102/392 (26%), Positives = 169/392 (43%), Gaps = 55/392 (14%)
Query: 66 YEKQKIKMMLGVE--AKKIDRERKVVITDKGE---VPYDKLVLATGS------KAFIPPI 114
++K K+ + G A K ++ + +KGE + +++ATGS + I +
Sbjct: 110 FQKNKVTSLFGTASFAGKNGDAYQIEVDNKGEKTVIEAKHVIVATGSVPRPLPQVAIDNV 169
Query: 115 KGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVEL 174
++NEG L + P K VIG+G+IGLE + ++G EV ++E
Sbjct: 170 NVLDNEGALNLTEV--------------PAKLGVIGSGVIGLEMGSVWNRVGAEVTILEA 215
Query: 175 LEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKIGDETVEA------ 228
L + + +E G+ GV + + I + + V + ET
Sbjct: 216 APTFLAAADQQIAKEAFKYFTKEQGLSIELGVKIGD-IKSEGKGVSVAYETAAGEAKTEV 274
Query: 229 -DLVLVATGVRANVD--LAKDAGLEVN-RGIV-VNEYLQTSDPDIYAIGDCAEVIDAVTG 283
D ++VA G N A+ GLE + RG + V+ +T+ P+++AIG D V G
Sbjct: 275 FDKLIVAIGRIPNTKGLNAEAVGLEKDERGFIKVDGECRTNLPNVWAIG------DVVRG 328
Query: 284 KRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELF-DLEIGTFGMTEERAKREG 342
+ V AE IAG+ K FN ++ D EI G TEE+ K EG
Sbjct: 329 PMLAHKASDEGV----AVAERIAGQ--KPHIDFNNVPFVIYTDPEIAWVGKTEEQLKAEG 382
Query: 343 IDVVVGKFR-GSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALA- 400
++ G G+ G TVK++ + R++G ++G V ++T A
Sbjct: 383 VEYKKGTSGFGANGRALAMGKAKGTVKVLADAKTDRILGVHMIG--PVVSELLTEGVTAL 440
Query: 401 QMGAKVEDIAYLETAYAPPISPTIDPITVAAD 432
+ A EDIA + A+ P +S + +AAD
Sbjct: 441 EFFASSEDIARIIHAH-PTLSEVVHEAALAAD 471
>pir||A39406 dihydrolipoamide dehydrogenase (EC 1.8.1.4) LPD-glc - Pseudomonas
putida
Length = 476
Score = 76.1 bits (184), Expect = 7e-13
Identities = 100/378 (26%), Positives = 169/378 (44%), Gaps = 53/378 (14%)
Query: 72 KMMLG--VEAKKIDRERKVVITDKGEVPYDKLVLATGSKAF-IPPIKGVENEGVFTLKSL 128
K++ G VE K D +V+ + ++LA+GS+ IPP +N V + +L
Sbjct: 123 KLLAGKKVEVTKADGTTEVIEAEN-------VILASGSRPIDIPPAPVDQNVIVDSTGAL 175
Query: 129 DDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDKDMA 188
+ + PK+ VIGAG+IGLE +A+LG EV V+E L+ L D ++
Sbjct: 176 EF---------QAVPKRLGVIGAGVIGLELGSVWARLGAEVTVLEALDTFL-MAADTAVS 225
Query: 189 SIVQKNMEEHGVKFRFGVGV--SEIIGNPVEA--VKIGDETVEADLVLVATGVRANVD-- 242
QK + + G+ + G V S++ GN VE ++ + D ++VA G R
Sbjct: 226 KEAQKTLTKQGLDIKLGARVTGSKVNGNEVEVTYTNAEEQKITFDKLIVAVGRRPVTTDL 285
Query: 243 LAKDAGLEVN-RG-IVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKV 300
LA D+G+ ++ RG I V++Y TS P +YA + G + + + +
Sbjct: 286 LAADSGVTIDERGYIFVDDYCATSVPGVYA------SVTWYAGMMLAHKASEEGIMVVER 339
Query: 301 AAEHIAGKDVKFRP-VFNTAITELFDLEIGTFGMTEERAKREGIDVVVGKF----RGSTK 355
H A + P V+ T EI G TE+ K + ++V VG F G
Sbjct: 340 IKGHKAQMNYDLIPSVYYT------HPEIAWVGKTEQALKAK-VEVNVGTFPFAASGRAM 392
Query: 356 PEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALA-QMGAKVEDIAYLET 414
GG VK+I + R++G ++G ++ A+A + G ED+ +
Sbjct: 393 AANDTGG---FVKVIADAKTDRVLGVHVIGPSA--AELVQQGAIAMEFGTSAEDLGMMVF 447
Query: 415 AYAPPISPTIDPITVAAD 432
++ P +S + +A +
Sbjct: 448 SH-PTLSEALHEAALAVN 464
>pir||D81137 2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase
NMB0957 [imported] - Neisseria meningitidis (group B
strain MD58) >gi|7226197|gb|AAF41363.1| (AE002447)
2-oxoglutarate dehydrogenase, E3 component, lipoamide
dehydrogenase [Neisseria meningitidis MC58]
Length = 477
Score = 76.1 bits (184), Expect = 7e-13
Identities = 102/392 (26%), Positives = 169/392 (43%), Gaps = 55/392 (14%)
Query: 66 YEKQKIKMMLGVE--AKKIDRERKVVITDKGE---VPYDKLVLATGS------KAFIPPI 114
++K K+ + G A K ++ + +KGE + +++ATGS + I +
Sbjct: 110 FQKNKVTSLFGTASFAGKNGDAYQIEVDNKGEKTVIEAKHVIVATGSVPRPLPQVAIDNV 169
Query: 115 KGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVEL 174
++NEG L + P K VIG+G+IGLE + ++G EV ++E
Sbjct: 170 NVLDNEGALNLTEV--------------PAKLGVIGSGVIGLEMGSVWNRVGAEVTILEA 215
Query: 175 LEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKIGDETVEA------ 228
L + + +E G+ GV + + I + + V + ET
Sbjct: 216 APTFLAAADQQIAKEAFKYFTKEQGLSIELGVKIGD-IKSEGKGVSVAYETAAGEAKTEV 274
Query: 229 -DLVLVATGVRANVD--LAKDAGLEVN-RGIV-VNEYLQTSDPDIYAIGDCAEVIDAVTG 283
D ++VA G N A+ GLE + RG + V+ +T+ P+++AIG D V G
Sbjct: 275 FDKLIVAIGRIPNTKGLNAEAVGLEKDERGFIKVDGECRTNLPNVWAIG------DVVRG 328
Query: 284 KRTLSQLGTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELF-DLEIGTFGMTEERAKREG 342
+ V AE IAG+ K FN ++ D EI G TEE+ K EG
Sbjct: 329 PMLAHKASDEGV----AVAERIAGQ--KPHIDFNNVPFVIYTDPEIAWVGKTEEQLKAEG 382
Query: 343 IDVVVGKFR-GSTKPEYYPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALA- 400
++ G G+ G TVK++ + R++G ++G V ++T A
Sbjct: 383 VEYKKGTSGFGANGRALAMGKAKGTVKVLADAKTDRILGVHMIG--PVVSELVTEGVTAL 440
Query: 401 QMGAKVEDIAYLETAYAPPISPTIDPITVAAD 432
+ A EDIA + A+ P +S + +AAD
Sbjct: 441 EFFASSEDIARIIHAH-PTLSEVVHEAALAAD 471
>pir||D71076 probable glutamate synthase small chain - Pyrococcus horikoshii
>gi|3257287|dbj|BAA29970.1| (AP000004) 472aa long
hypothetical glutamate synthase small chain [Pyrococcus
horikoshii]
Length = 472
Score = 75.7 bits (183), Expect = 1e-12
Identities = 95/343 (27%), Positives = 146/343 (41%), Gaps = 61/343 (17%)
Query: 2 RVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVF 61
+V V+G+G AG A L K+ K I +P G +
Sbjct: 150 KVAVVGAGPAGLTCAGELAKMGYKVTIFEALHKP-------------GGVLAYGIPEFRL 196
Query: 62 PNEF--YEKQKIKMMLGVEAKKIDRERKVVITDKGEVPYDKLVLATGSKA-FIPPIKGVE 118
P E +E +K+KM LGVE + K V D+ YD + + TG+ + I G+
Sbjct: 197 PKEILDHELKKLKM-LGVEIRTDHVVGKTVTLDELLQEYDAVFIGTGAGTPKLLNIPGIL 255
Query: 119 NEGVFTLKS-LDDVRRIKEYIGKRNP------KKAVVIGAGLIGLEGAEAFAKLGMEVLV 171
+ +++ L + +K Y KK +VIGAG ++ A + +LG EV +
Sbjct: 256 LDRIYSANEFLTRINLMKAYEFPEYDTPIAVGKKVIVIGAGNTAMDAARSALRLGAEVTI 315
Query: 172 VELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNP---VEAVK-------- 220
T ++++ K+ EE GVKF F + E IG+ V+AVK
Sbjct: 316 AYRRGREDMTAREEEI-----KHAEEEGVKFEFFLQPVEFIGDENGRVKAVKFERTKPLE 370
Query: 221 ----------IGD---ETVEADLVLVATGVRANVDLAKDAGLEVNRG--IVVNEYLQTSD 265
+G T+EAD V++A G+ N + +D L+ N IVV+E L TS
Sbjct: 371 ERDSKGKRKIVGTGEYVTLEADTVIIAIGLEPNKIITEDGRLKTNPDGTIVVDENLMTSI 430
Query: 266 PDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGK 308
P ++A G DA+ G+ T+ R AK E+I K
Sbjct: 431 PGVFAGG------DAIRGEATVILAMGDGKRAAKAIDEYIRRK 467
>emb|CAA73495.1| (Y13052) ORF454 [Staphylococcus sciuri]
Length = 454
Score = 75.3 bits (182), Expect = 1e-12
Identities = 94/381 (24%), Positives = 168/381 (43%), Gaps = 33/381 (8%)
Query: 66 YEKQKIKMMLGVEAKKIDRERKVVITDKGEVPYDKLVLATGSKAFIPPIKGVENEGVFTL 125
+E+Q I++++G K +D + + + D +V+ATG + I+G T
Sbjct: 100 FEQQGIEVIMGA-GKLVDAH--TIDVEGTPIQADNIVIATGQHSNKLDIEG----SALTH 152
Query: 126 KSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKLGMEVLVVELLEHLLPTMLDK 185
S D + K P IGAG+I +E A K G EV V+ + L +K
Sbjct: 153 DSRDFLSLDKM------PNNITFIGAGIISIEFASIAIKSGAEVHVIHHTDKPLEGFNEK 206
Query: 186 DMASIVQKNMEEHGVKFRFGVGVSEI--IGNPVEAVKIGDETVEADLVLVATGVRANVDL 243
+A ++ K +E GV+F F V + GN +++ + VL ATG + NV
Sbjct: 207 HIAKLIHK-LESEGVQFHFNENVQSVQQAGNSYNVTTESGLSIDTEYVLDATGRKPNVQN 265
Query: 244 --AKDAGLEVN-RGIVVNEYLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKV 300
+ G+E + +GI V+++L+T+ +IYA GD V+D +T+ +L +A +
Sbjct: 266 IGLDELGIEYSEKGIRVDDHLRTNIHNIYASGD---VLD-----KTIPKLTPTATFESNY 317
Query: 301 AAEHIAGKDVKFRPVFNTAI-TELFDL-EIGTFGMTEERAKREGIDVVVGKFRGSTKPEY 358
A HI G + P+ AI + L+ L + G+T + A+ + G
Sbjct: 318 IASHILG--INPNPIQYPAIPSVLYSLPRLSQIGVTVKEAEDNEAYTIKDIPFGKQMVFE 375
Query: 359 YPGGKPITVKLIFRKEEGRLIGAQIVGGERVWGRIMTLSALAQMGAKVEDIAYLETAYAP 418
Y + +I ++ +L+GA+I + I L+ + +D+ L A+
Sbjct: 376 YKNEIEAEMTIILNADK-QLVGAEIYADDAA-NLINLLTFIVNQKLTAKDLNQLIFAFPG 433
Query: 419 PISPTIDPITVAADMALRKMK 439
S +D + D+ +K +
Sbjct: 434 SSSGVLDLLKSCYDVIYKKQR 454
>gb|AAK43064.1| NADH dehydrogenase [Sulfolobus solfataricus]
Length = 343
Score = 74.5 bits (180), Expect = 2e-12
Identities = 93/341 (27%), Positives = 148/341 (43%), Gaps = 45/341 (13%)
Query: 1 MRVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIV 60
MRVV++G G AG + + I+I + +P I T+ E +V
Sbjct: 1 MRVVIVGGGFAG------IAAKSKYPNAILIDRSEYFLMTP-----KIVHTLADGESALV 49
Query: 61 FPNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGEVPYDKLVLATGSKAFIPPIKGVENE 120
Y K I E I K +IT+KGE+ YDKL+++ G + IKG NE
Sbjct: 50 -----YRKPDIV----AEVVNIKFNEKKIITNKGEISYDKLIISLGYSQDLSKIKGA-NE 99
Query: 121 GVFTLKSLDDVRRIKEYIGKRNPKKAVVIGAGLIGLEGAEAFAKL-------GME-VLVV 172
V L+S +D ++ I K + +VIG G +G+E + +L G E V+++
Sbjct: 100 HVMKLESFEDAIKMHNEIEK--ARTLIVIGGGDLGVEVVGSTIELVSKIKRKGKERVILI 157
Query: 173 ELLEHLLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKIGDETVEADLVL 232
+LP M ++ + + E GV+ V EI G V K D +
Sbjct: 158 NRGARILPHM-PPQISLKAENILAELGVEVILDASVEEIRGKTVITSK---GEFSGDHIF 213
Query: 233 VATGVRANVDLAKDAGLEVNRG-IVVNEYLQTSD-PDIYAIGDCAEVIDAVTGKRTLSQL 290
A G++ + + + L + G I VNE L + D D+Y G CA + ++ Q
Sbjct: 214 YAGGIKGS-NFLTNLKLSLKDGKINVNEDLSSVDYKDVYGAGVCASTFYPSNAEISM-QS 271
Query: 291 GTSAVRMAKVAAEHIAGKDVKFRPVFNTAITELFDLEIGTF 331
G A+ A I G+D KF+P+ I ++ + +G F
Sbjct: 272 GVHAILNA------IEGRDEKFKPMPLGDIVDIDNNFMGVF 306
>sp|P00393|DHNA_ECOLI NADH DEHYDROGENASE >gi|66211|pir||DEECR NADH dehydrogenase (EC
1.6.99.3) [validated] - Escherichia coli
>gi|581140|emb|CAA23586.1| (V00306) NADH dehydrogenase
[Escherichia coli] >gi|1651546|dbj|BAA35924.1| (D90746)
NADH dehydrogenase (EC 1.6.99.3) [Escherichia coli]
>gi|1787352|gb|AAC74193.1| (AE000211) respiratory NADH
dehydrogenase [Escherichia coli K12]
Length = 434
Score = 74.1 bits (179), Expect = 3e-12
Identities = 87/318 (27%), Positives = 139/318 (43%), Gaps = 51/318 (16%)
Query: 2 RVVVIGSGTAGSNFALFL-RKLDRK--AEIIVIGKEPTMQYSPCALPHVISGTIEKPEDV 58
++V++G G G A L KL RK A+I ++ + + + P L V +G++++ D
Sbjct: 7 KIVIVGGGAGGLEMATQLGHKLGRKKKAKITLVDRNHSHLWKPL-LHEVATGSLDEGVDA 65
Query: 59 IVFPNEFYEKQKIKMMLGVEAKKIDRERKVVIT-----DKGE-------VPYDKLVLATG 106
+ + + LG IDRE K + +KGE + YD LV+A G
Sbjct: 66 LSYLAHA-RNHGFQFQLG-SVIDIDREAKTITIAELRDEKGELLVPERKIAYDTLVMALG 123
Query: 107 SKAFIPPIKGVENEGVFTLKSLDDVRRIKEY-----------IGKRNPKKAVVIGAGLIG 155
S + GV+ +F L + RR + +G ++G G G
Sbjct: 124 STSNDFNTPGVKENCIF-LDNPHQARRFHQEMLNLFLKYSANLGANGKVNIAIVGGGATG 182
Query: 156 LE---------------GAEAFAKLGMEVLVVELLEHLLPTMLDKDMASIVQKNMEEHGV 200
+E G + + V +VE E +LP + + +++ + + GV
Sbjct: 183 VELSAELHNAVKQLHSYGYKGLTNEALNVTLVEAGERILPALPPR-ISAAAHNELTKLGV 241
Query: 201 KFRFGVGVSEIIGNPVEAVKIGDETVEADLVLVATGVRANVDLAKDAGLEVNR--GIVVN 258
+ V+ + K G E +EADL++ A G++A L GLE NR +VV
Sbjct: 242 RVLTQTMVTSADEGGLHT-KDG-EYIEADLMVWAAGIKAPDFLKDIGGLETNRINQLVVE 299
Query: 259 EYLQTS-DPDIYAIGDCA 275
LQT+ DPDIYAIGDCA
Sbjct: 300 PTLQTTRDPDIYAIGDCA 317
>dbj|BAB07134.1| (AP001518) NADH dehydrogenase [Bacillus halodurans]
Length = 546
Score = 72.2 bits (174), Expect = 1e-11
Identities = 73/292 (25%), Positives = 134/292 (45%), Gaps = 35/292 (11%)
Query: 2 RVVVIGSGTAGSNFA--LFLRKLDRKAEIIVIGKEP-----TMQYSPCALPHVISGTIEK 54
++VV+G G G L L EI ++ + P T Y+ A GT
Sbjct: 194 KLVVLGGGYGGMRILQRLLPNDLPSDWEITLVDRLPYHCLKTEYYALAA------GTASD 247
Query: 55 PEDVIVFPNEFYEKQKIKMMLGVEAKKIDRERKVVITDKGE-VPYDKLVLATGSKAFIPP 113
+ FP E ++ G ID K V+ ++GE + YD L++ G +
Sbjct: 248 HHLRVSFP----EDPRLSTRYG-SVSSIDLASKTVLFEEGEPLTYDTLIIGLGCEDKYHG 302
Query: 114 IKGVENEGVFTLKSLDDVRRIKEYIGKRNPKKAV-VIGAGLIGLEGAEAFAKLGMEVLVV 172
+ G + E ++++S++ RR E + P+ V ++GAGL G+E A + + L +
Sbjct: 303 VPGAK-EHTYSIQSMEATRRTYEALNNVRPEGVVTIVGAGLSGVELASELRESRPD-LTI 360
Query: 173 ELLEH--LLPTMLDKDMASIVQKNMEEHGVKFRFGVGVSEIIGNPVEAVKIGDETVEADL 230
+LL+ ++ +M + +++ VQ +HGV + S + AV DE +E+D
Sbjct: 361 KLLDRGDIILSMFPRRLSNYVQNWFIDHGVDI---INKSNVTKVEEGAVYNHDERIESDA 417
Query: 231 VLVATGVRANV-----DLAKDAGLEVNRGIVVNEYLQTSDPDIYAIGDCAEV 277
++ G++ NV D+ KD + R ++ + +D D++ +GDCA +
Sbjct: 418 IIWTAGIQPNVVVRNLDVEKD---QQGRVVLTPHHHLPTDEDVFVVGDCASL 466
>pir||B75024 glutamate synthase small chain. PAB1214 - Pyrococcus abyssi
(strain Orsay) >gi|5459146|emb|CAB50632.1| (AJ248288)
GLUTAMATE SYNTHASE SMALL CHAIN. [Pyrococcus abyssi]
Length = 475
Score = 71.4 bits (172), Expect = 2e-11
Identities = 93/347 (26%), Positives = 144/347 (40%), Gaps = 72/347 (20%)
Query: 2 RVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVF 61
RV VIG+G AG A L K+ + I EP G +
Sbjct: 156 RVAVIGAGPAGLTCAAELAKMGYEVTIFEALHEP-------------GGVLAYGIPEFRL 202
Query: 62 PNEFYEKQKIKM-MLGVEAKKIDRERKVVITDKGEVPYDKLVLATGSKA-FIPPIKGVEN 119
P E K+ K+ LGVE K + V + YD + ++TG+ + I G+
Sbjct: 203 PKEILRKELKKLKFLGVEIKTDHIVGRTVTIPELLEEYDAIFISTGAGTPKLLKIPGINL 262
Query: 120 EGVFTLKS-LDDVRRIKEY----------IGKRNPKKAVVIGAGLIGLEGAEAFAKLGME 168
G+++ L + +K Y +GKR +VIGAG ++ A + +LG E
Sbjct: 263 NGIYSANEFLTRINLMKAYKFPEYDTPIVVGKR----VIVIGAGNTAMDAARSALRLGAE 318
Query: 169 VLVVELLEHLLPTMLDKDMASIVQ--KNMEEHGVKFRFGVGVSEIIGNP---VEAVKIGD 223
V++ +DM + ++ ++ +E GVKF F V E IG+ V+AVK
Sbjct: 319 VIIAY-------RRGKEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDEEGRVKAVKFEK 371
Query: 224 E---------------------TVEADLVLVATGVRANVDLAKDA-GLEVNRG--IVVNE 259
TVEAD V++A G N L + GL+V I+V+E
Sbjct: 372 MKPLEERDKRGKRKIVGTGEYITVEADTVIIAIGQTPNKILWRTTPGLKVREDGTIIVDE 431
Query: 260 YLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIA 306
L TS P ++A G DA+ G+ T+ + AK E+++
Sbjct: 432 NLMTSIPGVFAGG------DAIRGEATVILAMGDGRKAAKAIHEYLS 472
>pir||F83079 NADH dehydrogenase PA4538 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9950781|gb|AAG07926.1|AE004867_12
(AE004867) NADH dehydrogenase [Pseudomonas aeruginosa]
Length = 435
Score = 71.0 bits (171), Expect = 2e-11
Identities = 86/317 (27%), Positives = 141/317 (44%), Gaps = 48/317 (15%)
Query: 2 RVVVIGSGTAGSNFALFL-RKLDR--KAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDV 58
R+V++G G G A L R L + KA++ ++ T + P L V +G++ ED
Sbjct: 4 RIVIVGGGAGGLELATRLGRTLGKRGKAQVTLVDANLTHIWKPL-LHEVAAGSLNSSEDE 62
Query: 59 IVFPNE----FYEKQKIKMMLGVEAKKIDR------ERKVVITDKGEVPYDKLVLATGSK 108
+ + + +E Q +M A K R E V + + ++ YD LV+A GS
Sbjct: 63 LNYVAQAKWNHFEFQLGRMQGLDRAGKRVRLAALVDENGVELVPERDIAYDTLVIAVGST 122
Query: 109 AFIPPIKGVENEGVFTLKSLDDVRRIKEYIGK-----------RNPKKAVVIGAGLIGLE 157
+G +F R ++ +G+ N +IGAG G+E
Sbjct: 123 TNDFGTEGAAEHCIFLDTRAQAERFHRQLLGQYLRAHTGHDANNNAVSIAIIGAGATGVE 182
Query: 158 -------GAEAFAKLGME--------VLVVELLEHLLPTMLDKDMASIVQKNMEEHGVKF 202
A+ A G++ + +VE +LP + ++ ++ V + + + GV+
Sbjct: 183 LAAELHHAAQMLAAYGLDRIRPEDLHISLVEAGPRVLPALPER-ISQPVHQTLSKLGVRV 241
Query: 203 RFGVGVSEIIGNPVEAVKIGD-ETVEADLVLVATGVRANVDLAKDAGLEVNR--GIVVNE 259
G VS++ + + GD E V A L + A G+RA L + GLE NR +VV
Sbjct: 242 MTGSAVSKV---DADGLWTGDGEFVPATLKVWAAGIRAPAFLKELDGLESNRINQLVVRP 298
Query: 260 YLQTS-DPDIYAIGDCA 275
LQT+ D DI+A GDCA
Sbjct: 299 TLQTTRDDDIFAFGDCA 315
>pir||D71200 probable glutamate synthase small chain - Pyrococcus horikoshii
>gi|3258312|dbj|BAA30995.1| (AP000007) 476aa long
hypothetical glutamate synthase small chain [Pyrococcus
horikoshii]
Length = 476
Score = 69.9 bits (168), Expect = 6e-11
Identities = 95/349 (27%), Positives = 147/349 (41%), Gaps = 72/349 (20%)
Query: 2 RVVVIGSGTAGSNFALFLRKLDRKAEIIVIGKEPTMQYSPCALPHVISGTIEKPEDVIVF 61
+V VIG+G AG A L K+ I EP G +
Sbjct: 156 KVAVIGAGPAGLTCAAELAKMGYDVTIYEALHEP-------------GGVLAYGIPEFRL 202
Query: 62 PNEFYEKQKIKM-MLGVEAKKIDRERKVVITDKGEVPYDKLVLATGSKA-FIPPIKGVEN 119
P E K+ K+ +LGV+ K + V + YD + + TG+ + I G+
Sbjct: 203 PKEILRKELKKLSILGVKIKTDHIVGRTVTIPELLKEYDAIFIGTGAGTPKLLKIPGINL 262
Query: 120 EGVFTLKS-LDDVRRIKEY----------IGKRNPKKAVVIGAGLIGLEGAEAFAKLGME 168
G+++ L + +K Y +GKR +VIGAG ++ A + +LG E
Sbjct: 263 NGIYSANEFLTRINLMKAYKFPEYDTPIIVGKR----VIVIGAGNTAMDAARSALRLGAE 318
Query: 169 VLVVELLEHLLPTMLDKDMASIVQ--KNMEEHGVKFRFGVGVSEIIGNP---VEAVK--- 220
V++ ++DM + ++ ++ +E GVKF F V E IG+ V+AVK
Sbjct: 319 VIIAY-------RRGEEDMTARIEEVQHAKEEGVKFMFFVNPVEFIGDENGRVKAVKFEK 371
Query: 221 ---------------IGD---ETVEADLVLVATGVRANVDLAKDA-GLEV--NRGIVVNE 259
IG TVE D V++A G N + K GL+V N IVV+E
Sbjct: 372 MKPLEERDSRGKRKIIGTGEYVTVETDTVVIAIGQTPNRIIWKTTPGLKVRENGTIVVDE 431
Query: 260 YLQTSDPDIYAIGDCAEVIDAVTGKRTLSQLGTSAVRMAKVAAEHIAGK 308
L TS P ++A G DA+ G+ T+ + AK E+++ K
Sbjct: 432 NLMTSIPGVFAGG------DAIRGEATVILAMGDGRKAAKAIHEYLSKK 474
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.139 0.385
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 152625120
Number of Sequences: 2977
Number of extensions: 6430283
Number of successful extensions: 19164
Number of sequences better than 1.0e-10: 373
Number of HSP's better than 0.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 321
Number of HSP's that attempted gapping in prelim test: 17755
Number of HSP's gapped (non-prelim): 608
length of query: 440
length of database: 189,106,746
effective HSP length: 59
effective length of query: 381
effective length of database: 153,796,013
effective search space: 58596280953
effective search space used: 58596280953
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 166 (69.1 bits)