BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1932 (nfeD) DE:NODULATION PROTEIN NFED
(440 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75107 nodulation protein nfed PAB1932 - Pyrococcus abyssi ... 863 0.0
pir||B71027 probable nfeD protein - Pyrococcus horikoshii >gi|32... 786 0.0
pir||H70456 nodulation competitiveness protein NfeD - Aquifex ae... 273 3e-72
gi|11499370 nodulation protein NfeD (nfeD) [Archaeoglobus fulgid... 265 1e-69
pir||A59268 NfeD protein - Rhizobium etli plasmid pTAL182c >gi|1... 216 5e-55
pir||H83589 conserved hypothetical protein PA0451 [imported] - P... 207 2e-52
pir||B72522 hypothetical protein APE2151 - Aeropyrum pernix (str... 176 5e-43
emb|CAC12211.1| (AL445066) nodulation protein NfeD related prote... 144 2e-33
dbj|BAB05075.1| (AP001511) unknown conserved protein [Bacillus h... 135 1e-30
sp|P54465|YQEZ_BACSU HYPOTHETICAL 46.5 KD PROTEIN IN RPSU-PHOH I... 111 2e-23
pir||G75172 hypothetical protein PAB0371 - Pyrococcus abyssi (st... 69 1e-10
>pir||C75107 nodulation protein nfed PAB1932 - Pyrococcus abyssi (strain Orsay)
>gi|5458083|emb|CAB49572.1| (AJ248285) NODULATION
PROTEIN NFED [Pyrococcus abyssi]
Length = 440
Score = 863 bits (2205), Expect = 0.0
Identities = 440/440 (100%), Positives = 440/440 (100%)
Query: 1 MKKIILPLLVFAFIASPVLAGNVVYVAQIKGQITSYTYDQFDRYITIAEENNAEAIIIEF 60
MKKIILPLLVFAFIASPVLAGNVVYVAQIKGQITSYTYDQFDRYITIAEENNAEAIIIEF
Sbjct: 1 MKKIILPLLVFAFIASPVLAGNVVYVAQIKGQITSYTYDQFDRYITIAEENNAEAIIIEF 60
Query: 61 DTPGGRADAMMNIIQRIQQSKVPVIIYVYPPGATAASAGTYIALGSHLIAMAPGTSIGAC 120
DTPGGRADAMMNIIQRIQQSKVPVIIYVYPPGATAASAGTYIALGSHLIAMAPGTSIGAC
Sbjct: 61 DTPGGRADAMMNIIQRIQQSKVPVIIYVYPPGATAASAGTYIALGSHLIAMAPGTSIGAC 120
Query: 121 RPILGYSQNGSIIEAPPKITNHFIAYIKSLAQESGRNETIAEEFITKDLSLTPEEALKYG 180
RPILGYSQNGSIIEAPPKITNHFIAYIKSLAQESGRNETIAEEFITKDLSLTPEEALKYG
Sbjct: 121 RPILGYSQNGSIIEAPPKITNHFIAYIKSLAQESGRNETIAEEFITKDLSLTPEEALKYG 180
Query: 181 VIEVIARDVNELLGKANGMKTKLPVNGRYVTLNFTNVDVKYLSPSLKDKLIMYITDPNVA 240
VIEVIARDVNELLGKANGMKTKLPVNGRYVTLNFTNVDVKYLSPSLKDKLIMYITDPNVA
Sbjct: 181 VIEVIARDVNELLGKANGMKTKLPVNGRYVTLNFTNVDVKYLSPSLKDKLIMYITDPNVA 240
Query: 241 YLLLTLGIWALIIGFLTPGWHVPETVGAIMVILAIIGFGYFGYNSAGILLIIIAMLFFVA 300
YLLLTLGIWALIIGFLTPGWHVPETVGAIMVILAIIGFGYFGYNSAGILLIIIAMLFFVA
Sbjct: 241 YLLLTLGIWALIIGFLTPGWHVPETVGAIMVILAIIGFGYFGYNSAGILLIIIAMLFFVA 300
Query: 301 EALTPTFGLFTVAGLITFIIGGILLFGGGEEYLIKREVFSQLRILIITVGVILAAFFAFG 360
EALTPTFGLFTVAGLITFIIGGILLFGGGEEYLIKREVFSQLRILIITVGVILAAFFAFG
Sbjct: 301 EALTPTFGLFTVAGLITFIIGGILLFGGGEEYLIKREVFSQLRILIITVGVILAAFFAFG 360
Query: 361 MAAVIRAHRRKASTGREEMIGLTGTVVEELNPEGMVKVRGELWRARSKFGEKIEKGERIK 420
MAAVIRAHRRKASTGREEMIGLTGTVVEELNPEGMVKVRGELWRARSKFGEKIEKGERIK
Sbjct: 361 MAAVIRAHRRKASTGREEMIGLTGTVVEELNPEGMVKVRGELWRARSKFGEKIEKGERIK 420
Query: 421 VVDIEGLTLIVVREGKGGER 440
VVDIEGLTLIVVREGKGGER
Sbjct: 421 VVDIEGLTLIVVREGKGGER 440
>pir||B71027 probable nfeD protein - Pyrococcus horikoshii
>gi|3257935|dbj|BAA30618.1| (AP000006) 441aa long
hypothetical nfeD protein [Pyrococcus horikoshii]
Length = 441
Score = 786 bits (2008), Expect = 0.0
Identities = 387/441 (87%), Positives = 425/441 (95%), Gaps = 1/441 (0%)
Query: 1 MKKIILPLLVFAFIASPVLAGNVVYVAQIKGQITSYTYDQFDRYITIAEENNAEAIIIEF 60
M++I+L ++V F+ASP+LA N+VYVAQIKGQITSYTYDQFDRYITIAE++NAEAIIIE
Sbjct: 1 MRRILLSMIVLIFLASPILAKNIVYVAQIKGQITSYTYDQFDRYITIAEQDNAEAIIIEL 60
Query: 61 DTPGGRADAMMNIIQRIQQSKVPVIIYVYPPGATAASAGTYIALGSHLIAMAPGTSIGAC 120
DTPGGRADAMMNI+QRIQQSK+PVIIYVYPPGA+AASAGTYIALGSHLIAMAPGTSIGAC
Sbjct: 61 DTPGGRADAMMNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGAC 120
Query: 121 RPILGYSQNGSIIEAPPKITNHFIAYIKSLAQESGRNETIAEEFITKDLSLTPEEALKYG 180
RPILGYSQNGSIIEAPPKITN+FIAYIKSLAQESGRN TIAEEFITKDLSLTPEEALKYG
Sbjct: 121 RPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEALKYG 180
Query: 181 VIEVIARDVNELLGKANGMKTKLPVNGRYVTLNFTNVDVKYLSPSLKDKLIMYITDPNVA 240
VIEV+ARD+NELL K+NGMKTK+PVNGRYVTLNFTNV+V+YL+PS KDKLI YITDPNVA
Sbjct: 181 VIEVVARDINELLKKSNGMKTKIPVNGRYVTLNFTNVEVRYLAPSFKDKLISYITDPNVA 240
Query: 241 YLLLTLGIWALIIGFLTPGWHVPETVGAIMVILAIIGFGYFGYNSAGILLIIIAMLFFVA 300
YLLLTLGIWALIIGFLTPGWHVPETVGAIM+ILAIIGFGYFGYNSAGILLII+AMLFF+A
Sbjct: 241 YLLLTLGIWALIIGFLTPGWHVPETVGAIMIILAIIGFGYFGYNSAGILLIIVAMLFFIA 300
Query: 301 EALTPTFGLFTVAGLITFIIGGILLFGGGEEYLIKREVFSQLRILIITVGVILAAFFAFG 360
EALTPTFGLFTVAGLITFIIGGILLFGGGEEYL+++EVFSQLRILIITVG ILAAFFAFG
Sbjct: 301 EALTPTFGLFTVAGLITFIIGGILLFGGGEEYLVRKEVFSQLRILIITVGAILAAFFAFG 360
Query: 361 MAAVIRAHRRKASTGREEMIGLTGTVVEELNPEGMVKVRGELWRARSKFGEKIEKGERIK 420
MAAVIRAH++KA TG+EEMIGL GTVVEELNPEGM+KVRGELW+ARSKF KIEKGE+++
Sbjct: 361 MAAVIRAHKKKARTGKEEMIGLIGTVVEELNPEGMIKVRGELWKARSKFNGKIEKGEKVR 420
Query: 421 VVDIEGLTLIVVREGK-GGER 440
VVD++GLTLIVVRE K GGE+
Sbjct: 421 VVDMDGLTLIVVRERKEGGEK 441
>pir||H70456 nodulation competitiveness protein NfeD - Aquifex aeolicus
>gi|2984101|gb|AAC07639.1| (AE000757) nodulation
competitiveness protein NfeD [Aquifex aeolicus]
Length = 425
Score = 273 bits (691), Expect = 3e-72
Identities = 166/435 (38%), Positives = 246/435 (56%), Gaps = 21/435 (4%)
Query: 3 KIILPLLVFAFIASPVLAGNVVYVAQIKGQITSYTYDQFDRYITIAEENNAEAIIIEFDT 62
KIIL L + F + ++VAQ +G IT T D +R I A++ I+ +T
Sbjct: 2 KIILLSLFWVFFSF-----GKIFVAQWEGPITPTTADYVERTIQKAQKEGGTLYILLLNT 56
Query: 63 PGGRADAMMNIIQRIQQSKVPVIIYVYPPGATAASAGTYIALGSHLIAMAPGTSIGACRP 122
PGG ++M IIQ + + P+++YVYPPG AASAG I + + + AMAPGT+IGA P
Sbjct: 57 PGGLVESMRKIIQSFETAPFPIVVYVYPPGGRAASAGAIITIAADIAAMAPGTNIGAAHP 116
Query: 123 ILGYSQNGSIIEAPP-----KITNHFIAYIKSLAQESGRNETIAEEFITKDLSLTPEEAL 177
+L Q E K+ +A+++++A+E GRN + E+ + + LSL+ EEAL
Sbjct: 117 VLATPQGREKKEKGKDVMMEKVLQDMLAFVRAIAKEKGRNVKVVEKMVKESLSLSAEEAL 176
Query: 178 KYGVIEVIARDVNELLGKANGMKTKLPVNGRYVTLNFTNVDVKYLSPSLKDKLIMYITDP 237
K GVI++IA ++ +LL K G K K +N Y + +V +L PSL+++ + IT+P
Sbjct: 177 KKGVIDLIAYNLEDLLTKLEGKKVK-KLNAVY-EIRTKGKEVVFLKPSLREEFLKIITNP 234
Query: 238 NVAYLLLTLGIWALIIGFLTPGWHVPETVGAIMVILAIIGFGYFGYNSAGILLIIIAMLF 297
VAYLLL LG + + PG +P +GAI ++L + G N +LLI++ +LF
Sbjct: 235 TVAYLLLMLGFYGIFFELYNPGAIIPGVLGAICLLLGLYGLSVISINWLALLLIVLGILF 294
Query: 298 FVAEALTPTFGLFTVAGLITFIIGGILLFGGGEEYLIKREVFSQLRILIITVGVILAAFF 357
FV E LTPTFG + G I+ ++G + L G Y E+ Q LII+V + A FF
Sbjct: 295 FVLELLTPTFGALALGGAISILLGSLFLVEEGSPY---GEIPKQ---LIISVSIFSAIFF 348
Query: 358 AFGMAAVIRAHRRKASTGREEMIGLTG-TVVEELNPEGMVKVRGELWRARSKFGEKIEKG 416
++A +RK TG E MIG G +V+ N G V V GE+W A S+ + I+KG
Sbjct: 349 LGVGYLGLKAQKRKKLTGIEGMIGEEGEAIVDFKNGRGKVFVHGEIWDAVSE--DDIKKG 406
Query: 417 ERIKVVDIEGLTLIV 431
+ +KVV +GL LIV
Sbjct: 407 DTVKVVGAKGLKLIV 421
>gi|11499370 nodulation protein NfeD (nfeD) [Archaeoglobus fulgidus]
>gi|7451697|pir||D69472 nodulation protein NfeD (nfeD)
homolog - Archaeoglobus fulgidus
>gi|2648763|gb|AAB89465.1| (AE000979) nodulation protein
NfeD (nfeD) [Archaeoglobus fulgidus]
Length = 444
Score = 265 bits (669), Expect = 1e-69
Identities = 155/439 (35%), Positives = 247/439 (55%), Gaps = 15/439 (3%)
Query: 1 MKKIILPLLVFAFIASPVLAGNV-VYVAQIKGQITSYTYDQFDRYITIAEENNAEAIIIE 59
MK L +L+ A + +PV A + V +++G+I TY A + + +
Sbjct: 8 MKLSPLFVLLLALLIAPVNAAELRVAKVEVRGEINQGTYLTLQHAYDFALRERFDVLFVV 67
Query: 60 FDTPGGRADAMMNIIQRIQQSKVPVIIYVYPPGATAASAGTYIALGSHLIAMAPGTSIGA 119
DTPGG + I++ S+VPV+++V P GA ASAG+ I L SH+ MA GT++GA
Sbjct: 68 LDTPGGLLSSTQKIVKMFLNSEVPVVVFV-PRGAMCASAGSIILLSSHIAVMADGTAVGA 126
Query: 120 CRPILGYSQNGSIIEAPPKITNHFIAYIKSLAQESGRNETIAEEFITKDLSLTPEEALKY 179
P+ S + E K N+ Y+K +A+E GRNE +AE+F+T+ L+LT +EAL+
Sbjct: 127 ATPV---SVGFASAEVENKTVNYIAGYVKDIARERGRNEGVAEKFVTQALTLTAKEALEQ 183
Query: 180 GVIEVIARDVNELLGKANGMKTKLPVNGRYVTLNFTNVDVKYLSPSLKDKLIMYITDPNV 239
G+I+ IA E + G + ++G+ VT F V + L+ + I+ P +
Sbjct: 184 GIIDYIANTEGEAIEGLKGRSAE--IDGKLVTFEFDTYRVIEVKKPLQASIYEIISSPQL 241
Query: 240 AYLLLTLGIWALIIGFLTPGWHVPETVGAIMVILAIIGFGYFGYNSAGILLIIIAMLFFV 299
A +LL LGI+ LI G +PG VPETVGAI +ILA+ G G G N G+LLI++ ++F
Sbjct: 242 AAILLLLGIYLLIFGLTSPGL-VPETVGAICLILALAGLGVIGINHLGLLLIVLGVIFLF 300
Query: 300 AEALTPTFGLFTVAGLITFIIGGILLFGGGEEYLIKREVFSQLRILIITVGVILAAFFAF 359
AE +TPT+G+ A +++ ++G ++LF E L+ + + +G+ L F
Sbjct: 301 AELMTPTYGVLGAASVVSVVLGLLILF---NEPLMPESFYDAFPKFVAGMGIGLGGIMTF 357
Query: 360 GMAAVIRAHRRKASTGREEMIGLTGTVVEELNPEGMVKVRGELWRARSKFGEKIEKGERI 419
+ + + ++K+S G E++G G V+E N G +VRGE+W+ S E++EKG+ +
Sbjct: 358 MIIKIAQIRKKKSSVG--EVVGEKGEVLEFSNGRGFARVRGEIWKVVS--DEELEKGDEV 413
Query: 420 KVVDIEGLTLIVVREGKGG 438
+V+ EGLTL V + G GG
Sbjct: 414 EVIAREGLTLRVRKIGGGG 432
>pir||A59268 NfeD protein - Rhizobium etli plasmid pTAL182c
>gi|1145796|gb|AAA84990.1| (U41754) NfeD [Rhizobium
etli] >gi|2655362|gb|AAC64872.1| (AF034831) ORF2
[Rhizobium etli]
Length = 467
Score = 216 bits (544), Expect = 5e-55
Identities = 150/454 (33%), Positives = 223/454 (49%), Gaps = 33/454 (7%)
Query: 5 ILPLLVFAF-IASPVLAGNVVYVAQIKGQITSYTYDQFDRYITIAEENNAEAIIIEFDTP 63
+L LL+ A+ + P + V ++ G I D R I A E A I+++ DTP
Sbjct: 23 LLFLLLSAWGLGIPSASDRASVVLKVNGAIGPAIADYVVRGIQRAGEREAVLIVLQMDTP 82
Query: 64 GGRADAMMNIIQRIQQSKVPVIIYVYPPGATAASAGTYIALGSHLIAMAPGTSIGACRPI 123
GG +M II+ I S VPV +V P GA AASAGTYI SH+ MAPGT++GA PI
Sbjct: 83 GGLDTSMREIIRAILASPVPVASFVAPSGARAASAGTYILYASHIAVMAPGTNLGAATPI 142
Query: 124 L---------------GYSQNGSIIEAP-----PKITNHFIAYIKSLAQESGRNETIAEE 163
+G EAP K N +AYI+ LA+ RN AE
Sbjct: 143 ALSVKPFGGDEEPEKKPSEPSGKQPEAPGNAHEAKAVNDAVAYIRGLAELRNRNADWAER 202
Query: 164 FITKDLSLTPEEALKYGVIEVIARDVNELLGKANGMKTKLPVNGRYVTLNFTNVDVKYLS 223
+ + SL+ A++ I+ A DVN+LL KA G + V V L+ + V+
Sbjct: 203 AVREAASLSSTAAVREHAIDFTAADVNDLLAKAQGRMVR--VGQTEVRLDTAGLAVQEFE 260
Query: 224 PSLKDKLIMYITDPNVAYLLLTLGIWALIIGFLTPGWHVPETVGAIMVILAIIGFGYFGY 283
P + +L+ ITDPN+A +L+ +GI+ LI FL PG +P T+G I ++L +
Sbjct: 261 PDWRTRLLSVITDPNIAIILMMVGIYGLIFEFLAPGTMLPGTIGGICLLLGLYALALLPV 320
Query: 284 NSAGILLIIIAMLFFVAEALTPTFGLFTVAGLITFIIGGILLFGGGEEYL-IKREVFSQL 342
+ AG+ LI++ + VAEA +P+FG F + G + I+G +LF L + R + +
Sbjct: 321 SFAGLGLILLGVGLTVAEAHSPSFGAFGIGGGVAVILGATILFDTDIPGLEVSRPLLGAI 380
Query: 343 RILIITVGVILAAFFAFGMAAVIRAHRRKASTGREEMIGLTGTVVEELNPEGMVKVRGEL 402
+ + +++A + R+ +TG EEMIG++G V G V GE
Sbjct: 381 AVATLAFSLVVARL-------AFTSRFRQVATGAEEMIGISGKVESWTGLTGYVIAHGER 433
Query: 403 WRARSKFGEKIEKGERIKVVDIEGLTLIVVREGK 436
W+A S E + G+ ++V GL L V K
Sbjct: 434 WKAVS--AEPLVAGDPVRVTGRNGLALEVTSRPK 465
>pir||H83589 conserved hypothetical protein PA0451 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9946310|gb|AAG03840.1|AE004482_7 (AE004482)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 443
Score = 207 bits (521), Expect = 2e-52
Identities = 147/446 (32%), Positives = 227/446 (49%), Gaps = 30/446 (6%)
Query: 8 LLVFAFIASPVLAGNVVYVAQIKGQITSYTYDQFDRYITIAEENNAEAIIIEFDTPGGRA 67
LL FA A + A V V + G I + D R I A E+ A+ +++E DTPGG
Sbjct: 12 LLCFAGPAC-LAASGPVRVLSVDGAIGPASADYLVRGIERAAEDGAQLVVLELDTPGGLD 70
Query: 68 DAMMNIIQRIQQSKVPVIIYVYPPGATAASAGTYIALGSHLIAMAPGTSIGACRPI-LGY 126
+M I++ I S+VPV +V P GA AASAGTYI H+ AMAPGT++GA P+ LG
Sbjct: 71 ASMRRIVKAILASQVPVAGFVAPSGARAASAGTYILYACHIAAMAPGTNLGAATPVRLGT 130
Query: 127 SQNGSIIEAPP---------KITNHFIAYIKSLAQESGRNETIAEEFITKDLSLTPEEAL 177
+ E PP K N AYI+ LAQ GRN AE + + +SL EA
Sbjct: 131 PDKPA--EKPPARDADPMARKQVNDAAAYIRGLAQLRGRNAEWAERAVREAVSLAAHEAA 188
Query: 178 KYGVIEVIARDVNELLGKANGMKTKLPVNGRYVTLNFTNVDVKYLSPSLKDKLIMYITDP 237
VI++ ARD+ +LL + + L V R +TL V+ +P + +L+ +TDP
Sbjct: 189 AQKVIDLQARDLPDLLRQLD--SRSLRVGERALTLATAGATVERQAPDWRARLLAVLTDP 246
Query: 238 NVAYLLLTLGIWALIIGFLTPGWHVPETVGAIMVILAIIGFGYFGYNSAGILLIIIAMLF 297
+VA +L+ +GI+ LI PG +P +G I ++L + N AG+ LI + + F
Sbjct: 247 SVALILMMIGIYGLIFELANPGMALPGVLGGICLLLGLYALQMLPVNYAGLALIALGLAF 306
Query: 298 FVAEALTPTFGLFTVAGLITFIIGGILLFGGGEEYLIKREV--FSQLRILIITVGVILAA 355
V EA +FG+ + G+++F++G ++ LI EV + L++ + ++ AA
Sbjct: 307 MVGEAFVASFGVLGIGGIVSFVVGALI--------LIDTEVPGYGIPPGLVVALALLSAA 358
Query: 356 FFAFGMAAVIRAHRRKASTGREEMIGLTGTV--VEELNP-EGMVKVRGELWRARSKFGEK 412
+ +R R+ +G ++G TV V+ P G V ++GE WR +
Sbjct: 359 LIVGLLGMALRTRRQAVVSGTAGLVGSLATVAAVDSEQPCAGWVLLQGERWRVLA--ARP 416
Query: 413 IEKGERIKVVDIEGLTLIVVREGKGG 438
+ G+ + V+ +GL L V +GG
Sbjct: 417 LAVGQPVWVLARKGLLLEVALADEGG 442
>pir||B72522 hypothetical protein APE2151 - Aeropyrum pernix (strain K1)
>gi|5105850|dbj|BAA81162.1| (AP000063) 500aa long
hypothetical protein [Aeropyrum pernix]
Length = 500
Score = 176 bits (441), Expect = 5e-43
Identities = 129/418 (30%), Positives = 215/418 (50%), Gaps = 18/418 (4%)
Query: 19 LAGNVVYVAQIKGQITSYTYDQFDRYITIAEENNAEAIIIEFDTPGGRADAMMNIIQRIQ 78
+ G + +I+G I + D + I AEE NA +I+E +TPGG DA ++ I
Sbjct: 81 VVGPKALIIRIEGTIDNAMMDYLKQSIERAEEENA-VLIVELNTPGGFVDAATEMVVSIS 139
Query: 79 QSKVPVIIYVYPPGATAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEA-PP 137
++++PV+ YV A SAGT I + +H+ AM PGT IG+ +PI GS
Sbjct: 140 KARIPVVGYVVEKWAE--SAGTMILMSTHIAAMQPGTIIGSVQPIAYDPTTGSYQPVLDS 197
Query: 138 KITNHFIAYIKSLAQESGRNETIAEEFITKDLSLTPEEALKYGVIEVIARDVNELLGKAN 197
KI N + + GRN F+ + + EEAL+ GVI++IARD +ELL +
Sbjct: 198 KIINPIVKTLCEHGATRGRNPEALVRFVLYNDNYGAEEALEKGVIDLIARDRSELLQLID 257
Query: 198 GMKTKLPVNGRYVTLNFTNVDVKYLSPSLKDKLIMYITDPNVAYLLLTLGIWALIIGFLT 257
G +LP+ G V ++ N + L P L+ +++ ++DP ++ +LL++G AL+ F
Sbjct: 258 GKVVRLPI-GETVLID-VNGSYEVLEPDLRIRVLHSLSDPMLSGILLSIGALALL--FSI 313
Query: 258 PGWHVPE-TVGAIMVILAIIGFGYFGYNSAGILLIIIAMLFFVAEALTPTFGLFTVAGLI 316
++P +G +++L ++G G F N+A ++LII + E TP FG+ G+
Sbjct: 314 ASGNLPGIALGGFLLVLGLVGSG-FNPNTAALILIIGGAILVFIELYTPGFGIIGGTGIA 372
Query: 317 TFIIGGILLFGGGEEYLIKREVFSQLRILIITVGVILAAFFAFGMAAVIRAHRRKASTGR 376
+ G ILL GE + + L +G + AF + V++A R + +
Sbjct: 373 MLVFGVILLPIRGEGFAVGESYAKTLLYTTYALGATMGGLTAFVVYKVVKAKRAPQTLWK 432
Query: 377 EEMIGLTGTVVEELNPE---GMVKVRGELWRARSKFGEKIEKGERIKVVDIEGLTLIV 431
+ G G V+++ PE G + V GE W+A++ + +G+++ VVD EG L+V
Sbjct: 433 --LKGAVGEAVDDI-PEGGTGFILVEGEYWKAKAI--TPVARGDKVVVVDKEGPYLVV 485
>emb|CAC12211.1| (AL445066) nodulation protein NfeD related protein [Thermoplasma
acidophilum]
Length = 434
Score = 144 bits (359), Expect = 2e-33
Identities = 118/441 (26%), Positives = 205/441 (45%), Gaps = 31/441 (7%)
Query: 1 MKKIILPLLVFAFIASPVLAGNVVYVAQIKGQITSYTYDQFDRYITIAEENNAEAIIIEF 60
M +L LLV S V V + +I + + + A++I+
Sbjct: 10 MAVFLLLLLVSIAADSQAQPQKNVVVIYLDEEIDAGSAAMITSTMNSISNTTTAAVVIDM 69
Query: 61 DTPGGRADAMMNIIQRIQ--QSKVPVIIYVYPPGATAASAGTYIALGSHLIAMAPGTSIG 118
+TPGG + M+ ++ I +S+ + I P A AASAG+Y+A+ + I MA GT IG
Sbjct: 70 NTPGGELENMIQMVSSITSAESRGIITITYVPQNAMAASAGSYVAMATDYIFMANGTYIG 129
Query: 119 ACRPILGYSQNGSIIEAPPKITNHFIAYIKSLAQESGRNETIAEEFITKDLSLTPEEALK 178
PI+ G+ +E T+ Y+ SLA E GRN T A ++ + + EA +
Sbjct: 130 PSTPIV---VGGTSLEQQ-HTTSAMEQYMVSLAAEHGRNTTAAYSMVSNNTAYNDTEAYR 185
Query: 179 YGVIEVIARDVNELLGKANGMKTKLPVNGRYVTLNFTNVDVKYLSPSLKDKLIMYITDPN 238
+I I +++ L +L+ ++ + PS D + ++++
Sbjct: 186 IHLINGIYGSLDKALA----------------SLSLSSYPQVSVYPSAYDNFLSFLSNAY 229
Query: 239 VAYLLLTLGIWALIIGFLTPGWHVPETVGAIMVILAIIGFGYFGYNSAGILLIIIAMLFF 298
V + + LG A+++ + G V G ++IL +G + G+LL+++ +
Sbjct: 230 VDGIFILLGFVAIMLD-IYHGSVVLTIAGITLLILGFLGLQLISASLVGVLLLLMGSVLI 288
Query: 299 VAEALTPTFGLFTVAGLITFIIGGILL----FGGGEEYLIKREVFSQLRILIITVGVILA 354
+ EA G ++G++ +IG LL + Y F+ +L + VI+A
Sbjct: 289 ILEAKMG-HGFALLSGVVVGLIGTFLLASPYYSSNPGY--SPSPFTTFDLLTSILIVIVA 345
Query: 355 AFFAFGMAAVIRAHRRKAS-TGREEMIGLTGTVVEELNPEGMVKVRGELWRARSKFGEKI 413
F AF + ++R + + TG E +IG G VE ++ +G V V G W+ARS G +I
Sbjct: 346 GFLAFYIRRIVRTFKFRGKWTGAESLIGKMGYAVEGIDEKGWVSVDGIEWQARSSNGSRI 405
Query: 414 EKGERIKVVDIEGLTLIVVRE 434
KG R+K+V +GL LIV ++
Sbjct: 406 PKGSRVKIVGRDGLILIVEKQ 426
>dbj|BAB05075.1| (AP001511) unknown conserved protein [Bacillus halodurans]
Length = 445
Score = 135 bits (336), Expect = 1e-30
Identities = 120/438 (27%), Positives = 200/438 (45%), Gaps = 59/438 (13%)
Query: 23 VVYVAQIKGQITSYTYDQFDRYITIAEENNAEAIIIEFDTPGGRADAMMNIIQRIQQSKV 82
+VY ++ ++ R + A E A+ I++E +TPGGR DA N+ + ++++ +
Sbjct: 38 LVYYIPVEQEVERGLEAFLQRSLDSAVEEGADHIVLEINTPGGRVDAAGNMARALRETDI 97
Query: 83 PVIIYVYPPGATAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNH 142
P+ YV A SAG YIAL + I MAPG+++G+ I + + A K ++
Sbjct: 98 PITAYVID---QALSAGAYIALNADEIVMAPGSTMGSAAVI-----DSAGNAADEKAQSY 149
Query: 143 FIAYIKSLAQESGRNETIAEEFITKD-------------LSLTPEEALKYGVIEVIARDV 189
++A +++ A+ + R+ A + L+LT +AL+ E IA +
Sbjct: 150 WLAEMRNAAEYNDRDPKYALAMADRSIEIPELDISNEELLTLTASQALEVNYAEAIASNR 209
Query: 190 NELLGKANGMKTKLPVNGRYVTLNFTNVDVKYLSPSLKDKLIMYITDPNVAYLLLTLGIW 249
ELL L N + + S +KL ++T+P + +LL++G
Sbjct: 210 AELLEH----------------LQIDNAFEQEMEVSFAEKLARFVTNPLIIPILLSIGSL 253
Query: 250 ALIIGFLTPGWHVPETVGAIMVILAIIGF---GYFGYNSAGILLIIIAMLFFVAEALTPT 306
L++ +PG+ VP +G ++L G G+ GY + ++L I L + E P
Sbjct: 254 GLVLELYSPGFGVPGIMGISALLLFFFGHLIAGFAGYEA--MILFIAGFLLILIEVFMPG 311
Query: 307 FGLFTVAGLITFIIGGILLFGGGEEYLIKREVFSQLRILIITVGVILAAFFAFGMAAVIR 366
FGLF + G I +IGG+LL +++ S ++T V + F FG +
Sbjct: 312 FGLFGILG-IAGMIGGMLLASFSTAWMLVSLGIS----AVVTTVVAIITFRYFGSRGPWK 366
Query: 367 AHRRKASTG----------REEMIGLTGTVVEELNPEGMVKVRGELWRARSKFGEKIEKG 416
ST R+E++GL G + L P G E S+ G IE+G
Sbjct: 367 KMILTESTSSEKGYITNETRQELVGLIGQSLTPLRPSGSGLFGEERLDVVSE-GGYIEQG 425
Query: 417 ERIKVVDIEGLTLIVVRE 434
+IKVV G + IVVRE
Sbjct: 426 RKIKVVSTSG-SRIVVRE 442
>sp|P54465|YQEZ_BACSU HYPOTHETICAL 46.5 KD PROTEIN IN RPSU-PHOH INTEREGENIC REGION
>gi|7475302|pir||H69952 hypothetical protein yqeZ -
Bacillus subtilis >gi|1303816|dbj|BAA12472.1| (D84432)
YqeZ [Bacillus subtilis] >gi|2634985|emb|CAB14481.1|
(Z99117) yqeZ [Bacillus subtilis]
Length = 437
Score = 111 bits (275), Expect = 2e-23
Identities = 108/420 (25%), Positives = 182/420 (42%), Gaps = 25/420 (5%)
Query: 24 VYVAQIKGQITSYTYDQFDRYITIAEENNAEAIIIEFDTPGGRADAMMNIIQRIQQSKVP 83
VYV ++ + R + A++ +A+ II++ +TPGG + +++ I +S++P
Sbjct: 33 VYVIPVEKNVEQGLASFLSRSLQDAKDAHADHIILDINTPGGLVKSAIDMADLITESEIP 92
Query: 84 VIIYVYPPGATAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNHF 143
V YV A SAG YIAL + I MAPG +GA + G A K + +
Sbjct: 93 VTAYV---NKRALSAGAYIALQADHIYMAPGGKMGAAAIVDGQGN-----AADQKAQSLW 144
Query: 144 IAYIKSLAQESGRNETIAEEFITKDLSLTPEEALKYGVIEVIARDVNELLGKANGMKTKL 203
+A ++ A ++ R+ A D+ A K ++ + A E+ G + G L
Sbjct: 145 LAEMEDAAVKNNRDPKYALAMADPDIDAKEVGAPKGDLLTLNADKAIEV-GYSEGTADNL 203
Query: 204 PVNGRYVTLNFTNVDVKYLSPSLKDKLIMYITDPNVAYLLLTLGIWALIIGFLTPGWHVP 263
+ L F + Y S +K ++T+P + +LLT+ L + +PG +P
Sbjct: 204 STLVK--KLGFEKAQISYAKESFAEKTARWLTNPVIVPILLTIAFLGLTVELFSPGVGLP 261
Query: 264 ETVGAIMVILAIIGF---GYFGYNSAGILLIIIAMLFFVAEALTPTFGLFTVAGLITFII 320
T G I ++L G G GY + +LL I ++ + E P G+ + GL I
Sbjct: 262 GTAGLIALLLFFYGHLAAGLAGYET--VLLFIAGVILILLEIFLPG-GIIGLLGLGAIIA 318
Query: 321 GGILLFGGGEEYLIKREVFSQLRI-LIITVGVILAAFFAFGMAAVIRAHRRKAS-----T 374
L G + + S + I I + +L F ++ S
Sbjct: 319 SLFLAAGSFTVMAVSLLIASAVSITAFILLTRVLGKRMKFFKKLILNDSTNTESGYVSNQ 378
Query: 375 GREEMIGLTGTVVEELNPEGMVKVRGELWRARSKFGEKIEKGERIKVVDIEGLTLIVVRE 434
R +++G G L P G V + E S+ G EK +++KV+ +EG + IVVRE
Sbjct: 379 TRTDLMGKVGITFTPLRPSGTVIIDDERLDVVSE-GSFTEKDKKVKVIKVEG-SRIVVRE 436
>pir||G75172 hypothetical protein PAB0371 - Pyrococcus abyssi (strain Orsay)
>gi|5457972|emb|CAB49462.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 124
Score = 69.1 bits (166), Expect = 1e-10
Identities = 39/92 (42%), Positives = 59/92 (63%), Gaps = 2/92 (2%)
Query: 342 LRILIITVGVILAAFFAFGMAAVIRAHRRKASTGREEMIGLTGTVVEELNPEGMVKVRGE 401
L++++I V +++ A + + ++K G E +IG G VVE+L PEGM+KVRGE
Sbjct: 34 LKLVLILVSILVLKD-ALLIKLFLDVLKKKPEVGIEGLIGERGIVVEDLTPEGMIKVRGE 92
Query: 402 LWRARSKFGEKIEKGERIKVVDIEGLTLIVVR 433
LWRAR+ G I+K E +KV+ +EG +IV R
Sbjct: 93 LWRARAISG-SIKKREAVKVIRVEGNIMIVER 123
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.323 0.143 0.406
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161102092
Number of Sequences: 2977
Number of extensions: 6821987
Number of successful extensions: 20325
Number of sequences better than 1.0e-10: 11
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 20282
Number of HSP's gapped (non-prelim): 11
length of query: 440
length of database: 189,106,746
effective HSP length: 56
effective length of query: 384
effective length of database: 155,591,474
effective search space: 59747126016
effective search space used: 59747126016
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 166 (69.1 bits)