BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1932 (nfeD) DE:NODULATION PROTEIN NFED
         (440 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75107 nodulation protein nfed PAB1932 - Pyrococcus abyssi ...   863  0.0
pir||B71027 probable nfeD protein - Pyrococcus horikoshii >gi|32...   786  0.0
pir||H70456 nodulation competitiveness protein NfeD - Aquifex ae...   273  3e-72
gi|11499370 nodulation protein NfeD (nfeD) [Archaeoglobus fulgid...   265  1e-69
pir||A59268 NfeD protein - Rhizobium etli plasmid pTAL182c >gi|1...   216  5e-55
pir||H83589 conserved hypothetical protein PA0451 [imported] - P...   207  2e-52
pir||B72522 hypothetical protein APE2151 - Aeropyrum pernix (str...   176  5e-43
emb|CAC12211.1| (AL445066) nodulation protein NfeD related prote...   144  2e-33
dbj|BAB05075.1| (AP001511) unknown conserved protein [Bacillus h...   135  1e-30
sp|P54465|YQEZ_BACSU HYPOTHETICAL 46.5 KD PROTEIN IN RPSU-PHOH I...   111  2e-23
pir||G75172 hypothetical protein PAB0371 - Pyrococcus abyssi (st...    69  1e-10

>pir||C75107 nodulation protein nfed PAB1932 - Pyrococcus abyssi (strain Orsay)
           >gi|5458083|emb|CAB49572.1| (AJ248285) NODULATION
           PROTEIN NFED [Pyrococcus abyssi]
           Length = 440
           
 Score =  863 bits (2205), Expect = 0.0
 Identities = 440/440 (100%), Positives = 440/440 (100%)

Query: 1   MKKIILPLLVFAFIASPVLAGNVVYVAQIKGQITSYTYDQFDRYITIAEENNAEAIIIEF 60
           MKKIILPLLVFAFIASPVLAGNVVYVAQIKGQITSYTYDQFDRYITIAEENNAEAIIIEF
Sbjct: 1   MKKIILPLLVFAFIASPVLAGNVVYVAQIKGQITSYTYDQFDRYITIAEENNAEAIIIEF 60

Query: 61  DTPGGRADAMMNIIQRIQQSKVPVIIYVYPPGATAASAGTYIALGSHLIAMAPGTSIGAC 120
           DTPGGRADAMMNIIQRIQQSKVPVIIYVYPPGATAASAGTYIALGSHLIAMAPGTSIGAC
Sbjct: 61  DTPGGRADAMMNIIQRIQQSKVPVIIYVYPPGATAASAGTYIALGSHLIAMAPGTSIGAC 120

Query: 121 RPILGYSQNGSIIEAPPKITNHFIAYIKSLAQESGRNETIAEEFITKDLSLTPEEALKYG 180
           RPILGYSQNGSIIEAPPKITNHFIAYIKSLAQESGRNETIAEEFITKDLSLTPEEALKYG
Sbjct: 121 RPILGYSQNGSIIEAPPKITNHFIAYIKSLAQESGRNETIAEEFITKDLSLTPEEALKYG 180

Query: 181 VIEVIARDVNELLGKANGMKTKLPVNGRYVTLNFTNVDVKYLSPSLKDKLIMYITDPNVA 240
           VIEVIARDVNELLGKANGMKTKLPVNGRYVTLNFTNVDVKYLSPSLKDKLIMYITDPNVA
Sbjct: 181 VIEVIARDVNELLGKANGMKTKLPVNGRYVTLNFTNVDVKYLSPSLKDKLIMYITDPNVA 240

Query: 241 YLLLTLGIWALIIGFLTPGWHVPETVGAIMVILAIIGFGYFGYNSAGILLIIIAMLFFVA 300
           YLLLTLGIWALIIGFLTPGWHVPETVGAIMVILAIIGFGYFGYNSAGILLIIIAMLFFVA
Sbjct: 241 YLLLTLGIWALIIGFLTPGWHVPETVGAIMVILAIIGFGYFGYNSAGILLIIIAMLFFVA 300

Query: 301 EALTPTFGLFTVAGLITFIIGGILLFGGGEEYLIKREVFSQLRILIITVGVILAAFFAFG 360
           EALTPTFGLFTVAGLITFIIGGILLFGGGEEYLIKREVFSQLRILIITVGVILAAFFAFG
Sbjct: 301 EALTPTFGLFTVAGLITFIIGGILLFGGGEEYLIKREVFSQLRILIITVGVILAAFFAFG 360

Query: 361 MAAVIRAHRRKASTGREEMIGLTGTVVEELNPEGMVKVRGELWRARSKFGEKIEKGERIK 420
           MAAVIRAHRRKASTGREEMIGLTGTVVEELNPEGMVKVRGELWRARSKFGEKIEKGERIK
Sbjct: 361 MAAVIRAHRRKASTGREEMIGLTGTVVEELNPEGMVKVRGELWRARSKFGEKIEKGERIK 420

Query: 421 VVDIEGLTLIVVREGKGGER 440
           VVDIEGLTLIVVREGKGGER
Sbjct: 421 VVDIEGLTLIVVREGKGGER 440


>pir||B71027 probable nfeD protein - Pyrococcus horikoshii
           >gi|3257935|dbj|BAA30618.1| (AP000006) 441aa long
           hypothetical nfeD protein [Pyrococcus horikoshii]
           Length = 441
           
 Score =  786 bits (2008), Expect = 0.0
 Identities = 387/441 (87%), Positives = 425/441 (95%), Gaps = 1/441 (0%)

Query: 1   MKKIILPLLVFAFIASPVLAGNVVYVAQIKGQITSYTYDQFDRYITIAEENNAEAIIIEF 60
           M++I+L ++V  F+ASP+LA N+VYVAQIKGQITSYTYDQFDRYITIAE++NAEAIIIE 
Sbjct: 1   MRRILLSMIVLIFLASPILAKNIVYVAQIKGQITSYTYDQFDRYITIAEQDNAEAIIIEL 60

Query: 61  DTPGGRADAMMNIIQRIQQSKVPVIIYVYPPGATAASAGTYIALGSHLIAMAPGTSIGAC 120
           DTPGGRADAMMNI+QRIQQSK+PVIIYVYPPGA+AASAGTYIALGSHLIAMAPGTSIGAC
Sbjct: 61  DTPGGRADAMMNIVQRIQQSKIPVIIYVYPPGASAASAGTYIALGSHLIAMAPGTSIGAC 120

Query: 121 RPILGYSQNGSIIEAPPKITNHFIAYIKSLAQESGRNETIAEEFITKDLSLTPEEALKYG 180
           RPILGYSQNGSIIEAPPKITN+FIAYIKSLAQESGRN TIAEEFITKDLSLTPEEALKYG
Sbjct: 121 RPILGYSQNGSIIEAPPKITNYFIAYIKSLAQESGRNATIAEEFITKDLSLTPEEALKYG 180

Query: 181 VIEVIARDVNELLGKANGMKTKLPVNGRYVTLNFTNVDVKYLSPSLKDKLIMYITDPNVA 240
           VIEV+ARD+NELL K+NGMKTK+PVNGRYVTLNFTNV+V+YL+PS KDKLI YITDPNVA
Sbjct: 181 VIEVVARDINELLKKSNGMKTKIPVNGRYVTLNFTNVEVRYLAPSFKDKLISYITDPNVA 240

Query: 241 YLLLTLGIWALIIGFLTPGWHVPETVGAIMVILAIIGFGYFGYNSAGILLIIIAMLFFVA 300
           YLLLTLGIWALIIGFLTPGWHVPETVGAIM+ILAIIGFGYFGYNSAGILLII+AMLFF+A
Sbjct: 241 YLLLTLGIWALIIGFLTPGWHVPETVGAIMIILAIIGFGYFGYNSAGILLIIVAMLFFIA 300

Query: 301 EALTPTFGLFTVAGLITFIIGGILLFGGGEEYLIKREVFSQLRILIITVGVILAAFFAFG 360
           EALTPTFGLFTVAGLITFIIGGILLFGGGEEYL+++EVFSQLRILIITVG ILAAFFAFG
Sbjct: 301 EALTPTFGLFTVAGLITFIIGGILLFGGGEEYLVRKEVFSQLRILIITVGAILAAFFAFG 360

Query: 361 MAAVIRAHRRKASTGREEMIGLTGTVVEELNPEGMVKVRGELWRARSKFGEKIEKGERIK 420
           MAAVIRAH++KA TG+EEMIGL GTVVEELNPEGM+KVRGELW+ARSKF  KIEKGE+++
Sbjct: 361 MAAVIRAHKKKARTGKEEMIGLIGTVVEELNPEGMIKVRGELWKARSKFNGKIEKGEKVR 420

Query: 421 VVDIEGLTLIVVREGK-GGER 440
           VVD++GLTLIVVRE K GGE+
Sbjct: 421 VVDMDGLTLIVVRERKEGGEK 441


>pir||H70456 nodulation competitiveness protein NfeD - Aquifex aeolicus
           >gi|2984101|gb|AAC07639.1| (AE000757) nodulation
           competitiveness protein NfeD [Aquifex aeolicus]
           Length = 425
           
 Score =  273 bits (691), Expect = 3e-72
 Identities = 166/435 (38%), Positives = 246/435 (56%), Gaps = 21/435 (4%)

Query: 3   KIILPLLVFAFIASPVLAGNVVYVAQIKGQITSYTYDQFDRYITIAEENNAEAIIIEFDT 62
           KIIL  L + F +        ++VAQ +G IT  T D  +R I  A++      I+  +T
Sbjct: 2   KIILLSLFWVFFSF-----GKIFVAQWEGPITPTTADYVERTIQKAQKEGGTLYILLLNT 56

Query: 63  PGGRADAMMNIIQRIQQSKVPVIIYVYPPGATAASAGTYIALGSHLIAMAPGTSIGACRP 122
           PGG  ++M  IIQ  + +  P+++YVYPPG  AASAG  I + + + AMAPGT+IGA  P
Sbjct: 57  PGGLVESMRKIIQSFETAPFPIVVYVYPPGGRAASAGAIITIAADIAAMAPGTNIGAAHP 116

Query: 123 ILGYSQNGSIIEAPP-----KITNHFIAYIKSLAQESGRNETIAEEFITKDLSLTPEEAL 177
           +L   Q     E        K+    +A+++++A+E GRN  + E+ + + LSL+ EEAL
Sbjct: 117 VLATPQGREKKEKGKDVMMEKVLQDMLAFVRAIAKEKGRNVKVVEKMVKESLSLSAEEAL 176

Query: 178 KYGVIEVIARDVNELLGKANGMKTKLPVNGRYVTLNFTNVDVKYLSPSLKDKLIMYITDP 237
           K GVI++IA ++ +LL K  G K K  +N  Y  +     +V +L PSL+++ +  IT+P
Sbjct: 177 KKGVIDLIAYNLEDLLTKLEGKKVK-KLNAVY-EIRTKGKEVVFLKPSLREEFLKIITNP 234

Query: 238 NVAYLLLTLGIWALIIGFLTPGWHVPETVGAIMVILAIIGFGYFGYNSAGILLIIIAMLF 297
            VAYLLL LG + +      PG  +P  +GAI ++L + G      N   +LLI++ +LF
Sbjct: 235 TVAYLLLMLGFYGIFFELYNPGAIIPGVLGAICLLLGLYGLSVISINWLALLLIVLGILF 294

Query: 298 FVAEALTPTFGLFTVAGLITFIIGGILLFGGGEEYLIKREVFSQLRILIITVGVILAAFF 357
           FV E LTPTFG   + G I+ ++G + L   G  Y    E+  Q   LII+V +  A FF
Sbjct: 295 FVLELLTPTFGALALGGAISILLGSLFLVEEGSPY---GEIPKQ---LIISVSIFSAIFF 348

Query: 358 AFGMAAVIRAHRRKASTGREEMIGLTG-TVVEELNPEGMVKVRGELWRARSKFGEKIEKG 416
                  ++A +RK  TG E MIG  G  +V+  N  G V V GE+W A S+  + I+KG
Sbjct: 349 LGVGYLGLKAQKRKKLTGIEGMIGEEGEAIVDFKNGRGKVFVHGEIWDAVSE--DDIKKG 406

Query: 417 ERIKVVDIEGLTLIV 431
           + +KVV  +GL LIV
Sbjct: 407 DTVKVVGAKGLKLIV 421


>gi|11499370 nodulation protein NfeD (nfeD) [Archaeoglobus fulgidus]
           >gi|7451697|pir||D69472 nodulation protein NfeD (nfeD)
           homolog - Archaeoglobus fulgidus
           >gi|2648763|gb|AAB89465.1| (AE000979) nodulation protein
           NfeD (nfeD) [Archaeoglobus fulgidus]
           Length = 444
           
 Score =  265 bits (669), Expect = 1e-69
 Identities = 155/439 (35%), Positives = 247/439 (55%), Gaps = 15/439 (3%)

Query: 1   MKKIILPLLVFAFIASPVLAGNV-VYVAQIKGQITSYTYDQFDRYITIAEENNAEAIIIE 59
           MK   L +L+ A + +PV A  + V   +++G+I   TY         A     + + + 
Sbjct: 8   MKLSPLFVLLLALLIAPVNAAELRVAKVEVRGEINQGTYLTLQHAYDFALRERFDVLFVV 67

Query: 60  FDTPGGRADAMMNIIQRIQQSKVPVIIYVYPPGATAASAGTYIALGSHLIAMAPGTSIGA 119
            DTPGG   +   I++    S+VPV+++V P GA  ASAG+ I L SH+  MA GT++GA
Sbjct: 68  LDTPGGLLSSTQKIVKMFLNSEVPVVVFV-PRGAMCASAGSIILLSSHIAVMADGTAVGA 126

Query: 120 CRPILGYSQNGSIIEAPPKITNHFIAYIKSLAQESGRNETIAEEFITKDLSLTPEEALKY 179
             P+   S   +  E   K  N+   Y+K +A+E GRNE +AE+F+T+ L+LT +EAL+ 
Sbjct: 127 ATPV---SVGFASAEVENKTVNYIAGYVKDIARERGRNEGVAEKFVTQALTLTAKEALEQ 183

Query: 180 GVIEVIARDVNELLGKANGMKTKLPVNGRYVTLNFTNVDVKYLSPSLKDKLIMYITDPNV 239
           G+I+ IA    E +    G   +  ++G+ VT  F    V  +   L+  +   I+ P +
Sbjct: 184 GIIDYIANTEGEAIEGLKGRSAE--IDGKLVTFEFDTYRVIEVKKPLQASIYEIISSPQL 241

Query: 240 AYLLLTLGIWALIIGFLTPGWHVPETVGAIMVILAIIGFGYFGYNSAGILLIIIAMLFFV 299
           A +LL LGI+ LI G  +PG  VPETVGAI +ILA+ G G  G N  G+LLI++ ++F  
Sbjct: 242 AAILLLLGIYLLIFGLTSPGL-VPETVGAICLILALAGLGVIGINHLGLLLIVLGVIFLF 300

Query: 300 AEALTPTFGLFTVAGLITFIIGGILLFGGGEEYLIKREVFSQLRILIITVGVILAAFFAF 359
           AE +TPT+G+   A +++ ++G ++LF    E L+    +      +  +G+ L     F
Sbjct: 301 AELMTPTYGVLGAASVVSVVLGLLILF---NEPLMPESFYDAFPKFVAGMGIGLGGIMTF 357

Query: 360 GMAAVIRAHRRKASTGREEMIGLTGTVVEELNPEGMVKVRGELWRARSKFGEKIEKGERI 419
            +  + +  ++K+S G  E++G  G V+E  N  G  +VRGE+W+  S   E++EKG+ +
Sbjct: 358 MIIKIAQIRKKKSSVG--EVVGEKGEVLEFSNGRGFARVRGEIWKVVS--DEELEKGDEV 413

Query: 420 KVVDIEGLTLIVVREGKGG 438
           +V+  EGLTL V + G GG
Sbjct: 414 EVIAREGLTLRVRKIGGGG 432


>pir||A59268 NfeD protein - Rhizobium etli plasmid pTAL182c
           >gi|1145796|gb|AAA84990.1| (U41754) NfeD [Rhizobium
           etli] >gi|2655362|gb|AAC64872.1| (AF034831) ORF2
           [Rhizobium etli]
           Length = 467
           
 Score =  216 bits (544), Expect = 5e-55
 Identities = 150/454 (33%), Positives = 223/454 (49%), Gaps = 33/454 (7%)

Query: 5   ILPLLVFAF-IASPVLAGNVVYVAQIKGQITSYTYDQFDRYITIAEENNAEAIIIEFDTP 63
           +L LL+ A+ +  P  +     V ++ G I     D   R I  A E  A  I+++ DTP
Sbjct: 23  LLFLLLSAWGLGIPSASDRASVVLKVNGAIGPAIADYVVRGIQRAGEREAVLIVLQMDTP 82

Query: 64  GGRADAMMNIIQRIQQSKVPVIIYVYPPGATAASAGTYIALGSHLIAMAPGTSIGACRPI 123
           GG   +M  II+ I  S VPV  +V P GA AASAGTYI   SH+  MAPGT++GA  PI
Sbjct: 83  GGLDTSMREIIRAILASPVPVASFVAPSGARAASAGTYILYASHIAVMAPGTNLGAATPI 142

Query: 124 L---------------GYSQNGSIIEAP-----PKITNHFIAYIKSLAQESGRNETIAEE 163
                               +G   EAP      K  N  +AYI+ LA+   RN   AE 
Sbjct: 143 ALSVKPFGGDEEPEKKPSEPSGKQPEAPGNAHEAKAVNDAVAYIRGLAELRNRNADWAER 202

Query: 164 FITKDLSLTPEEALKYGVIEVIARDVNELLGKANGMKTKLPVNGRYVTLNFTNVDVKYLS 223
            + +  SL+   A++   I+  A DVN+LL KA G   +  V    V L+   + V+   
Sbjct: 203 AVREAASLSSTAAVREHAIDFTAADVNDLLAKAQGRMVR--VGQTEVRLDTAGLAVQEFE 260

Query: 224 PSLKDKLIMYITDPNVAYLLLTLGIWALIIGFLTPGWHVPETVGAIMVILAIIGFGYFGY 283
           P  + +L+  ITDPN+A +L+ +GI+ LI  FL PG  +P T+G I ++L +        
Sbjct: 261 PDWRTRLLSVITDPNIAIILMMVGIYGLIFEFLAPGTMLPGTIGGICLLLGLYALALLPV 320

Query: 284 NSAGILLIIIAMLFFVAEALTPTFGLFTVAGLITFIIGGILLFGGGEEYL-IKREVFSQL 342
           + AG+ LI++ +   VAEA +P+FG F + G +  I+G  +LF      L + R +   +
Sbjct: 321 SFAGLGLILLGVGLTVAEAHSPSFGAFGIGGGVAVILGATILFDTDIPGLEVSRPLLGAI 380

Query: 343 RILIITVGVILAAFFAFGMAAVIRAHRRKASTGREEMIGLTGTVVEELNPEGMVKVRGEL 402
            +  +   +++A            +  R+ +TG EEMIG++G V       G V   GE 
Sbjct: 381 AVATLAFSLVVARL-------AFTSRFRQVATGAEEMIGISGKVESWTGLTGYVIAHGER 433

Query: 403 WRARSKFGEKIEKGERIKVVDIEGLTLIVVREGK 436
           W+A S   E +  G+ ++V    GL L V    K
Sbjct: 434 WKAVS--AEPLVAGDPVRVTGRNGLALEVTSRPK 465


>pir||H83589 conserved hypothetical protein PA0451 [imported] - Pseudomonas
           aeruginosa (strain PAO1)
           >gi|9946310|gb|AAG03840.1|AE004482_7 (AE004482)
           conserved hypothetical protein [Pseudomonas aeruginosa]
           Length = 443
           
 Score =  207 bits (521), Expect = 2e-52
 Identities = 147/446 (32%), Positives = 227/446 (49%), Gaps = 30/446 (6%)

Query: 8   LLVFAFIASPVLAGNVVYVAQIKGQITSYTYDQFDRYITIAEENNAEAIIIEFDTPGGRA 67
           LL FA  A  + A   V V  + G I   + D   R I  A E+ A+ +++E DTPGG  
Sbjct: 12  LLCFAGPAC-LAASGPVRVLSVDGAIGPASADYLVRGIERAAEDGAQLVVLELDTPGGLD 70

Query: 68  DAMMNIIQRIQQSKVPVIIYVYPPGATAASAGTYIALGSHLIAMAPGTSIGACRPI-LGY 126
            +M  I++ I  S+VPV  +V P GA AASAGTYI    H+ AMAPGT++GA  P+ LG 
Sbjct: 71  ASMRRIVKAILASQVPVAGFVAPSGARAASAGTYILYACHIAAMAPGTNLGAATPVRLGT 130

Query: 127 SQNGSIIEAPP---------KITNHFIAYIKSLAQESGRNETIAEEFITKDLSLTPEEAL 177
               +  E PP         K  N   AYI+ LAQ  GRN   AE  + + +SL   EA 
Sbjct: 131 PDKPA--EKPPARDADPMARKQVNDAAAYIRGLAQLRGRNAEWAERAVREAVSLAAHEAA 188

Query: 178 KYGVIEVIARDVNELLGKANGMKTKLPVNGRYVTLNFTNVDVKYLSPSLKDKLIMYITDP 237
              VI++ ARD+ +LL + +     L V  R +TL      V+  +P  + +L+  +TDP
Sbjct: 189 AQKVIDLQARDLPDLLRQLD--SRSLRVGERALTLATAGATVERQAPDWRARLLAVLTDP 246

Query: 238 NVAYLLLTLGIWALIIGFLTPGWHVPETVGAIMVILAIIGFGYFGYNSAGILLIIIAMLF 297
           +VA +L+ +GI+ LI     PG  +P  +G I ++L +        N AG+ LI + + F
Sbjct: 247 SVALILMMIGIYGLIFELANPGMALPGVLGGICLLLGLYALQMLPVNYAGLALIALGLAF 306

Query: 298 FVAEALTPTFGLFTVAGLITFIIGGILLFGGGEEYLIKREV--FSQLRILIITVGVILAA 355
            V EA   +FG+  + G+++F++G ++        LI  EV  +     L++ + ++ AA
Sbjct: 307 MVGEAFVASFGVLGIGGIVSFVVGALI--------LIDTEVPGYGIPPGLVVALALLSAA 358

Query: 356 FFAFGMAAVIRAHRRKASTGREEMIGLTGTV--VEELNP-EGMVKVRGELWRARSKFGEK 412
                +   +R  R+   +G   ++G   TV  V+   P  G V ++GE WR  +     
Sbjct: 359 LIVGLLGMALRTRRQAVVSGTAGLVGSLATVAAVDSEQPCAGWVLLQGERWRVLA--ARP 416

Query: 413 IEKGERIKVVDIEGLTLIVVREGKGG 438
           +  G+ + V+  +GL L V    +GG
Sbjct: 417 LAVGQPVWVLARKGLLLEVALADEGG 442


>pir||B72522 hypothetical protein APE2151 - Aeropyrum pernix (strain K1)
           >gi|5105850|dbj|BAA81162.1| (AP000063) 500aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 500
           
 Score =  176 bits (441), Expect = 5e-43
 Identities = 129/418 (30%), Positives = 215/418 (50%), Gaps = 18/418 (4%)

Query: 19  LAGNVVYVAQIKGQITSYTYDQFDRYITIAEENNAEAIIIEFDTPGGRADAMMNIIQRIQ 78
           + G    + +I+G I +   D   + I  AEE NA  +I+E +TPGG  DA   ++  I 
Sbjct: 81  VVGPKALIIRIEGTIDNAMMDYLKQSIERAEEENA-VLIVELNTPGGFVDAATEMVVSIS 139

Query: 79  QSKVPVIIYVYPPGATAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEA-PP 137
           ++++PV+ YV    A   SAGT I + +H+ AM PGT IG+ +PI      GS       
Sbjct: 140 KARIPVVGYVVEKWAE--SAGTMILMSTHIAAMQPGTIIGSVQPIAYDPTTGSYQPVLDS 197

Query: 138 KITNHFIAYIKSLAQESGRNETIAEEFITKDLSLTPEEALKYGVIEVIARDVNELLGKAN 197
           KI N  +  +       GRN      F+  + +   EEAL+ GVI++IARD +ELL   +
Sbjct: 198 KIINPIVKTLCEHGATRGRNPEALVRFVLYNDNYGAEEALEKGVIDLIARDRSELLQLID 257

Query: 198 GMKTKLPVNGRYVTLNFTNVDVKYLSPSLKDKLIMYITDPNVAYLLLTLGIWALIIGFLT 257
           G   +LP+ G  V ++  N   + L P L+ +++  ++DP ++ +LL++G  AL+  F  
Sbjct: 258 GKVVRLPI-GETVLID-VNGSYEVLEPDLRIRVLHSLSDPMLSGILLSIGALALL--FSI 313

Query: 258 PGWHVPE-TVGAIMVILAIIGFGYFGYNSAGILLIIIAMLFFVAEALTPTFGLFTVAGLI 316
              ++P   +G  +++L ++G G F  N+A ++LII   +    E  TP FG+    G+ 
Sbjct: 314 ASGNLPGIALGGFLLVLGLVGSG-FNPNTAALILIIGGAILVFIELYTPGFGIIGGTGIA 372

Query: 317 TFIIGGILLFGGGEEYLIKREVFSQLRILIITVGVILAAFFAFGMAAVIRAHRRKASTGR 376
             + G ILL   GE + +       L      +G  +    AF +  V++A R   +  +
Sbjct: 373 MLVFGVILLPIRGEGFAVGESYAKTLLYTTYALGATMGGLTAFVVYKVVKAKRAPQTLWK 432

Query: 377 EEMIGLTGTVVEELNPE---GMVKVRGELWRARSKFGEKIEKGERIKVVDIEGLTLIV 431
             + G  G  V+++ PE   G + V GE W+A++     + +G+++ VVD EG  L+V
Sbjct: 433 --LKGAVGEAVDDI-PEGGTGFILVEGEYWKAKAI--TPVARGDKVVVVDKEGPYLVV 485


>emb|CAC12211.1| (AL445066) nodulation protein NfeD related protein [Thermoplasma
           acidophilum]
           Length = 434
           
 Score =  144 bits (359), Expect = 2e-33
 Identities = 118/441 (26%), Positives = 205/441 (45%), Gaps = 31/441 (7%)

Query: 1   MKKIILPLLVFAFIASPVLAGNVVYVAQIKGQITSYTYDQFDRYITIAEENNAEAIIIEF 60
           M   +L LLV     S       V V  +  +I + +       +         A++I+ 
Sbjct: 10  MAVFLLLLLVSIAADSQAQPQKNVVVIYLDEEIDAGSAAMITSTMNSISNTTTAAVVIDM 69

Query: 61  DTPGGRADAMMNIIQRIQ--QSKVPVIIYVYPPGATAASAGTYIALGSHLIAMAPGTSIG 118
           +TPGG  + M+ ++  I   +S+  + I   P  A AASAG+Y+A+ +  I MA GT IG
Sbjct: 70  NTPGGELENMIQMVSSITSAESRGIITITYVPQNAMAASAGSYVAMATDYIFMANGTYIG 129

Query: 119 ACRPILGYSQNGSIIEAPPKITNHFIAYIKSLAQESGRNETIAEEFITKDLSLTPEEALK 178
              PI+     G+ +E     T+    Y+ SLA E GRN T A   ++ + +    EA +
Sbjct: 130 PSTPIV---VGGTSLEQQ-HTTSAMEQYMVSLAAEHGRNTTAAYSMVSNNTAYNDTEAYR 185

Query: 179 YGVIEVIARDVNELLGKANGMKTKLPVNGRYVTLNFTNVDVKYLSPSLKDKLIMYITDPN 238
             +I  I   +++ L                 +L+ ++     + PS  D  + ++++  
Sbjct: 186 IHLINGIYGSLDKALA----------------SLSLSSYPQVSVYPSAYDNFLSFLSNAY 229

Query: 239 VAYLLLTLGIWALIIGFLTPGWHVPETVGAIMVILAIIGFGYFGYNSAGILLIIIAMLFF 298
           V  + + LG  A+++  +  G  V    G  ++IL  +G      +  G+LL+++  +  
Sbjct: 230 VDGIFILLGFVAIMLD-IYHGSVVLTIAGITLLILGFLGLQLISASLVGVLLLLMGSVLI 288

Query: 299 VAEALTPTFGLFTVAGLITFIIGGILL----FGGGEEYLIKREVFSQLRILIITVGVILA 354
           + EA     G   ++G++  +IG  LL    +     Y      F+   +L   + VI+A
Sbjct: 289 ILEAKMG-HGFALLSGVVVGLIGTFLLASPYYSSNPGY--SPSPFTTFDLLTSILIVIVA 345

Query: 355 AFFAFGMAAVIRAHRRKAS-TGREEMIGLTGTVVEELNPEGMVKVRGELWRARSKFGEKI 413
            F AF +  ++R  + +   TG E +IG  G  VE ++ +G V V G  W+ARS  G +I
Sbjct: 346 GFLAFYIRRIVRTFKFRGKWTGAESLIGKMGYAVEGIDEKGWVSVDGIEWQARSSNGSRI 405

Query: 414 EKGERIKVVDIEGLTLIVVRE 434
            KG R+K+V  +GL LIV ++
Sbjct: 406 PKGSRVKIVGRDGLILIVEKQ 426


>dbj|BAB05075.1| (AP001511) unknown conserved protein [Bacillus halodurans]
           Length = 445
           
 Score =  135 bits (336), Expect = 1e-30
 Identities = 120/438 (27%), Positives = 200/438 (45%), Gaps = 59/438 (13%)

Query: 23  VVYVAQIKGQITSYTYDQFDRYITIAEENNAEAIIIEFDTPGGRADAMMNIIQRIQQSKV 82
           +VY   ++ ++         R +  A E  A+ I++E +TPGGR DA  N+ + ++++ +
Sbjct: 38  LVYYIPVEQEVERGLEAFLQRSLDSAVEEGADHIVLEINTPGGRVDAAGNMARALRETDI 97

Query: 83  PVIIYVYPPGATAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNH 142
           P+  YV      A SAG YIAL +  I MAPG+++G+   I     + +   A  K  ++
Sbjct: 98  PITAYVID---QALSAGAYIALNADEIVMAPGSTMGSAAVI-----DSAGNAADEKAQSY 149

Query: 143 FIAYIKSLAQESGRNETIAEEFITKD-------------LSLTPEEALKYGVIEVIARDV 189
           ++A +++ A+ + R+   A     +              L+LT  +AL+    E IA + 
Sbjct: 150 WLAEMRNAAEYNDRDPKYALAMADRSIEIPELDISNEELLTLTASQALEVNYAEAIASNR 209

Query: 190 NELLGKANGMKTKLPVNGRYVTLNFTNVDVKYLSPSLKDKLIMYITDPNVAYLLLTLGIW 249
            ELL                  L   N   + +  S  +KL  ++T+P +  +LL++G  
Sbjct: 210 AELLEH----------------LQIDNAFEQEMEVSFAEKLARFVTNPLIIPILLSIGSL 253

Query: 250 ALIIGFLTPGWHVPETVGAIMVILAIIGF---GYFGYNSAGILLIIIAMLFFVAEALTPT 306
            L++   +PG+ VP  +G   ++L   G    G+ GY +  ++L I   L  + E   P 
Sbjct: 254 GLVLELYSPGFGVPGIMGISALLLFFFGHLIAGFAGYEA--MILFIAGFLLILIEVFMPG 311

Query: 307 FGLFTVAGLITFIIGGILLFGGGEEYLIKREVFSQLRILIITVGVILAAFFAFGMAAVIR 366
           FGLF + G I  +IGG+LL      +++     S     ++T  V +  F  FG     +
Sbjct: 312 FGLFGILG-IAGMIGGMLLASFSTAWMLVSLGIS----AVVTTVVAIITFRYFGSRGPWK 366

Query: 367 AHRRKASTG----------REEMIGLTGTVVEELNPEGMVKVRGELWRARSKFGEKIEKG 416
                 ST           R+E++GL G  +  L P G      E     S+ G  IE+G
Sbjct: 367 KMILTESTSSEKGYITNETRQELVGLIGQSLTPLRPSGSGLFGEERLDVVSE-GGYIEQG 425

Query: 417 ERIKVVDIEGLTLIVVRE 434
            +IKVV   G + IVVRE
Sbjct: 426 RKIKVVSTSG-SRIVVRE 442


>sp|P54465|YQEZ_BACSU HYPOTHETICAL 46.5 KD PROTEIN IN RPSU-PHOH INTEREGENIC REGION
           >gi|7475302|pir||H69952 hypothetical protein yqeZ -
           Bacillus subtilis >gi|1303816|dbj|BAA12472.1| (D84432)
           YqeZ [Bacillus subtilis] >gi|2634985|emb|CAB14481.1|
           (Z99117) yqeZ [Bacillus subtilis]
           Length = 437
           
 Score =  111 bits (275), Expect = 2e-23
 Identities = 108/420 (25%), Positives = 182/420 (42%), Gaps = 25/420 (5%)

Query: 24  VYVAQIKGQITSYTYDQFDRYITIAEENNAEAIIIEFDTPGGRADAMMNIIQRIQQSKVP 83
           VYV  ++  +         R +  A++ +A+ II++ +TPGG   + +++   I +S++P
Sbjct: 33  VYVIPVEKNVEQGLASFLSRSLQDAKDAHADHIILDINTPGGLVKSAIDMADLITESEIP 92

Query: 84  VIIYVYPPGATAASAGTYIALGSHLIAMAPGTSIGACRPILGYSQNGSIIEAPPKITNHF 143
           V  YV      A SAG YIAL +  I MAPG  +GA   + G         A  K  + +
Sbjct: 93  VTAYV---NKRALSAGAYIALQADHIYMAPGGKMGAAAIVDGQGN-----AADQKAQSLW 144

Query: 144 IAYIKSLAQESGRNETIAEEFITKDLSLTPEEALKYGVIEVIARDVNELLGKANGMKTKL 203
           +A ++  A ++ R+   A      D+      A K  ++ + A    E+ G + G    L
Sbjct: 145 LAEMEDAAVKNNRDPKYALAMADPDIDAKEVGAPKGDLLTLNADKAIEV-GYSEGTADNL 203

Query: 204 PVNGRYVTLNFTNVDVKYLSPSLKDKLIMYITDPNVAYLLLTLGIWALIIGFLTPGWHVP 263
               +   L F    + Y   S  +K   ++T+P +  +LLT+    L +   +PG  +P
Sbjct: 204 STLVK--KLGFEKAQISYAKESFAEKTARWLTNPVIVPILLTIAFLGLTVELFSPGVGLP 261

Query: 264 ETVGAIMVILAIIGF---GYFGYNSAGILLIIIAMLFFVAEALTPTFGLFTVAGLITFII 320
            T G I ++L   G    G  GY +  +LL I  ++  + E   P  G+  + GL   I 
Sbjct: 262 GTAGLIALLLFFYGHLAAGLAGYET--VLLFIAGVILILLEIFLPG-GIIGLLGLGAIIA 318

Query: 321 GGILLFGGGEEYLIKREVFSQLRI-LIITVGVILAAFFAFGMAAVIRAHRRKAS-----T 374
              L  G      +   + S + I   I +  +L     F    ++       S      
Sbjct: 319 SLFLAAGSFTVMAVSLLIASAVSITAFILLTRVLGKRMKFFKKLILNDSTNTESGYVSNQ 378

Query: 375 GREEMIGLTGTVVEELNPEGMVKVRGELWRARSKFGEKIEKGERIKVVDIEGLTLIVVRE 434
            R +++G  G     L P G V +  E     S+ G   EK +++KV+ +EG + IVVRE
Sbjct: 379 TRTDLMGKVGITFTPLRPSGTVIIDDERLDVVSE-GSFTEKDKKVKVIKVEG-SRIVVRE 436


>pir||G75172 hypothetical protein PAB0371 - Pyrococcus abyssi (strain Orsay)
           >gi|5457972|emb|CAB49462.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 124
           
 Score = 69.1 bits (166), Expect = 1e-10
 Identities = 39/92 (42%), Positives = 59/92 (63%), Gaps = 2/92 (2%)

Query: 342 LRILIITVGVILAAFFAFGMAAVIRAHRRKASTGREEMIGLTGTVVEELNPEGMVKVRGE 401
           L++++I V +++    A  +   +   ++K   G E +IG  G VVE+L PEGM+KVRGE
Sbjct: 34  LKLVLILVSILVLKD-ALLIKLFLDVLKKKPEVGIEGLIGERGIVVEDLTPEGMIKVRGE 92

Query: 402 LWRARSKFGEKIEKGERIKVVDIEGLTLIVVR 433
           LWRAR+  G  I+K E +KV+ +EG  +IV R
Sbjct: 93  LWRARAISG-SIKKREAVKVIRVEGNIMIVER 123


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.143    0.406 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161102092
Number of Sequences: 2977
Number of extensions: 6821987
Number of successful extensions: 20325
Number of sequences better than 1.0e-10: 11
Number of HSP's better than  0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 20282
Number of HSP's gapped (non-prelim): 11
length of query: 440
length of database: 189,106,746
effective HSP length: 56
effective length of query: 384
effective length of database: 155,591,474
effective search space: 59747126016
effective search space used: 59747126016
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 166 (69.1 bits)