BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1937 (PAB1937) DE:Hypothetical protein
(460 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||D75106 hypothetical protein PAB1937 - Pyrococcus abyssi (st... 915 0.0
pir||A71028 hypothetical protein PH1517 - Pyrococcus horikoshii ... 887 0.0
pir||T48661 acetate--CoA ligase (ADP-forming) (EC 6.2.1.13) alph... 883 0.0
emb|CAC12278.1| (AL445066) probable acetyl-CoA synthetase [Therm... 407 e-112
pir||A75021 succinyl-coa synthetase alpha chain related protein ... 404 e-111
pir||G71124 hypothetical protein PH0766 - Pyrococcus horikoshii ... 401 e-111
pir||D75038 hypothetical protein PAB0854 - Pyrococcus abyssi (st... 395 e-109
pir||E71189 hypothetical protein PH1789 - Pyrococcus horikoshii ... 391 e-108
pir||E75149 succinyl-coa synthetase alpha chain related protein ... 391 e-107
pir||T35770 hypothetical protein SC8A6.03c SC8A6.03c - Streptomy... 388 e-107
pir||H71207 hypothetical protein PH1928 - Pyrococcus horikoshii ... 387 e-106
sp|Q58010|Y590_METJA HYPOTHETICAL PROTEIN MJ0590 >gi|2128020|pir... 378 e-104
gi|11498810 conserved hypothetical protein [Archaeoglobus fulgid... 363 2e-99
pir||F75054 hypothetical protein PAB1431 - Pyrococcus abyssi (st... 335 5e-91
pir||H71106 hypothetical protein PH0625 - Pyrococcus horikoshii ... 334 1e-90
gb|AAD44021.1|AF107206_1 (AF107206) acetyl-CoA synthetase [Giard... 333 2e-90
gb|AAF88064.1|AF286346_1 (AF286346) acetyl-CoA synthetase [Entam... 323 3e-87
gi|11499106 conserved hypothetical protein [Archaeoglobus fulgid... 317 2e-85
gb|AAK42002.1| Conserved hypothetical protein [Sulfolobus solfat... 308 1e-82
gi|11499522 conserved hypothetical protein [Archaeoglobus fulgid... 286 3e-76
gi|11498792 conserved hypothetical protein [Archaeoglobus fulgid... 273 3e-72
pir||C82443 conserved hypothetical protein VCA0574 [imported] - ... 269 5e-71
gi|11498537 conserved hypothetical protein [Archaeoglobus fulgid... 230 3e-59
gb|AAG19369.1| (AE005031) acetyl-CoA synthetase; Acs3 [Halobacte... 222 8e-57
dbj|BAA10925.1| (D64044) hypothetycal 67KD protein fragment in U... 221 1e-56
sp|P76594|YFIQ_ECOLI HYPOTHETICAL 98.0 KD PROTEIN IN UNG-PSSA IN... 221 1e-56
pir||B83518 pimeloyl-CoA synthetase PA1017 [imported] - Pseudomo... 216 5e-55
pir||T35878 hypothetical protein SC9B10.09 - Streptomyces coelic... 215 8e-55
emb|CAA10043.1| (AJ012480) pimeloyl-CoA synthetase [Pseudomonas ... 209 6e-53
pir||H83024 hypothetical protein PA4978 [imported] - Pseudomonas... 141 1e-32
pir||A72707 probable succinyl-CoA synthetase alpha chain APE1072... 76 6e-13
gi|11499134 succinyl-CoA synthetase, alpha subunit (sucD-1) [Arc... 72 1e-11
gi|11499767 succinyl-CoA synthetase, alpha subunit (sucD-2) [Arc... 71 2e-11
pir||F75091 hypothetical protein PAB1624 - Pyrococcus abyssi (st... 70 4e-11
pir||F81399 succinate--CoA ligase (ADP-forming) (EC 6.2.1.5) alp... 70 4e-11
pir||T35774 succinyl-Coa synthetase alpha chain - Streptomyces c... 69 1e-10
>pir||D75106 hypothetical protein PAB1937 - Pyrococcus abyssi (strain Orsay)
>gi|5458076|emb|CAB49565.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 460
Score = 915 bits (2339), Expect = 0.0
Identities = 460/460 (100%), Positives = 460/460 (100%)
Query: 1 MSLEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKV 60
MSLEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKV
Sbjct: 1 MSLEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKV 60
Query: 61 YKSILEVPDEVDMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQLV 120
YKSILEVPDEVDMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQLV
Sbjct: 61 YKSILEVPDEVDMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQLV 120
Query: 121 ETARKYGMRILGPNIFGVVYTPAKLNGTFGPTDVLPGPLALISQSGALGIALMGWTILEK 180
ETARKYGMRILGPNIFGVVYTPAKLNGTFGPTDVLPGPLALISQSGALGIALMGWTILEK
Sbjct: 121 ETARKYGMRILGPNIFGVVYTPAKLNGTFGPTDVLPGPLALISQSGALGIALMGWTILEK 180
Query: 181 IGLSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKKKPII 240
IGLSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKKKPII
Sbjct: 181 IGLSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKKKPII 240
Query: 241 VIKAGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALSNLPEPQ 300
VIKAGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALSNLPEPQ
Sbjct: 241 VIKAGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALSNLPEPQ 300
Query: 301 GDNVVIITNGGGIGVMATDAAEEEGLKLYDDLEQLKIFANHMPPFGSYKNPVDLTGMADA 360
GDNVVIITNGGGIGVMATDAAEEEGLKLYDDLEQLKIFANHMPPFGSYKNPVDLTGMADA
Sbjct: 301 GDNVVIITNGGGIGVMATDAAEEEGLKLYDDLEQLKIFANHMPPFGSYKNPVDLTGMADA 360
Query: 361 KSYEGAIRDALNHPEMHSIIVLYCQTAVLDPRDLAEIIIREYNESGRKKPLVVAIVGGIE 420
KSYEGAIRDALNHPEMHSIIVLYCQTAVLDPRDLAEIIIREYNESGRKKPLVVAIVGGIE
Sbjct: 361 KSYEGAIRDALNHPEMHSIIVLYCQTAVLDPRDLAEIIIREYNESGRKKPLVVAIVGGIE 420
Query: 421 AKEAIDTLNENGIPAYPEPERAVKALSALYRWSKWKAKHK 460
AKEAIDTLNENGIPAYPEPERAVKALSALYRWSKWKAKHK
Sbjct: 421 AKEAIDTLNENGIPAYPEPERAVKALSALYRWSKWKAKHK 460
>pir||A71028 hypothetical protein PH1517 - Pyrococcus horikoshii
>gi|3257942|dbj|BAA30625.1| (AP000006) 460aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 460
Score = 887 bits (2267), Expect = 0.0
Identities = 442/460 (96%), Positives = 454/460 (98%)
Query: 1 MSLEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKV 60
MSLEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKV
Sbjct: 1 MSLEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKV 60
Query: 61 YKSILEVPDEVDMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQLV 120
YKSILEVPDEVDMA+IVVPAK VP+VVEECG+KGVKV PIISSGFGELGEEGKKVEQQLV
Sbjct: 61 YKSILEVPDEVDMAVIVVPAKSVPEVVEECGKKGVKVAPIISSGFGELGEEGKKVEQQLV 120
Query: 121 ETARKYGMRILGPNIFGVVYTPAKLNGTFGPTDVLPGPLALISQSGALGIALMGWTILEK 180
ETARKYGMRILGPNIFGVVYTPAKLN TFGPTDVLPGPLALISQSGALGIALMGWTILEK
Sbjct: 121 ETARKYGMRILGPNIFGVVYTPAKLNATFGPTDVLPGPLALISQSGALGIALMGWTILEK 180
Query: 181 IGLSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKKKPII 240
IGLSAVVSVGNKADIDDADLLEFFKDDENT+AILIYMEGVKDGRRFMEVAKEVSKKKPII
Sbjct: 181 IGLSAVVSVGNKADIDDADLLEFFKDDENTKAILIYMEGVKDGRRFMEVAKEVSKKKPII 240
Query: 241 VIKAGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALSNLPEPQ 300
VIKAGRSERGAKAAASHTGSLAGSDTIYSAAFKQ+GVLRALTIGEAFDWARALSNLPEPQ
Sbjct: 241 VIKAGRSERGAKAAASHTGSLAGSDTIYSAAFKQTGVLRALTIGEAFDWARALSNLPEPQ 300
Query: 301 GDNVVIITNGGGIGVMATDAAEEEGLKLYDDLEQLKIFANHMPPFGSYKNPVDLTGMADA 360
G+NVVIITNGGGIGVMATDAAEEEGL LYDDLEQLKIFANHMPPFGSYKNPVDLTGMADA
Sbjct: 301 GENVVIITNGGGIGVMATDAAEEEGLHLYDDLEQLKIFANHMPPFGSYKNPVDLTGMADA 360
Query: 361 KSYEGAIRDALNHPEMHSIIVLYCQTAVLDPRDLAEIIIREYNESGRKKPLVVAIVGGIE 420
KSYEGAIRDAL HP+MHSIIVLYCQTAVLDPR+LA++IIREYNESGRKKPLVVAIVGGIE
Sbjct: 361 KSYEGAIRDALAHPDMHSIIVLYCQTAVLDPRELADVIIREYNESGRKKPLVVAIVGGIE 420
Query: 421 AKEAIDTLNENGIPAYPEPERAVKALSALYRWSKWKAKHK 460
AK+AID LNENGIPAYPEPERAVKALSALY+WSKWKAKHK
Sbjct: 421 AKQAIDVLNENGIPAYPEPERAVKALSALYKWSKWKAKHK 460
>pir||T48661 acetate--CoA ligase (ADP-forming) (EC 6.2.1.13) alpha chain
[validated] - Pyrococcus furiosus
>gi|5419966|emb|CAB46516.1| (AJ240061) acetyl-CoA
synthetase [Pyrococcus furiosus]
Length = 462
Score = 883 bits (2258), Expect = 0.0
Identities = 437/460 (95%), Positives = 452/460 (98%)
Query: 1 MSLEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKV 60
MSLEALFNPKS+AVIGAS+KPGKIGYAIMKNLIEYGYEGKIYPVNIKGGE+EI+GRKFKV
Sbjct: 1 MSLEALFNPKSVAVIGASAKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEIEINGRKFKV 60
Query: 61 YKSILEVPDEVDMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQLV 120
YKS+LE+PDEVDMA+IVVPAKFVPQV+EECGQKGVKVVPIISSGFGELGEEGKKVEQQLV
Sbjct: 61 YKSVLEIPDEVDMAVIVVPAKFVPQVLEECGQKGVKVVPIISSGFGELGEEGKKVEQQLV 120
Query: 121 ETARKYGMRILGPNIFGVVYTPAKLNGTFGPTDVLPGPLALISQSGALGIALMGWTILEK 180
ETARKYGMRILGPNIFGVVYTPAKLN TFGPTDVLPGPLALISQSGALGIALMGWTILEK
Sbjct: 121 ETARKYGMRILGPNIFGVVYTPAKLNATFGPTDVLPGPLALISQSGALGIALMGWTILEK 180
Query: 181 IGLSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKKKPII 240
IGLSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKKKPII
Sbjct: 181 IGLSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKKKPII 240
Query: 241 VIKAGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALSNLPEPQ 300
VIKAGRSERGAKAAASHTGSLAGSD +YSAAFKQSGVLRA TIGEAFDWARALSNLPEPQ
Sbjct: 241 VIKAGRSERGAKAAASHTGSLAGSDKVYSAAFKQSGVLRAYTIGEAFDWARALSNLPEPQ 300
Query: 301 GDNVVIITNGGGIGVMATDAAEEEGLKLYDDLEQLKIFANHMPPFGSYKNPVDLTGMADA 360
GDNVVIITNGGGIGVMATDAAEEEGL LYD+LE+LKIFANHMPPFGSYKNPVDLTGMAD
Sbjct: 301 GDNVVIITNGGGIGVMATDAAEEEGLHLYDNLEELKIFANHMPPFGSYKNPVDLTGMADG 360
Query: 361 KSYEGAIRDALNHPEMHSIIVLYCQTAVLDPRDLAEIIIREYNESGRKKPLVVAIVGGIE 420
KSYEGAIRDAL HPEMHSI VLYCQTAVLDPR+LAEI+IREYNESGRKKPLVVAIVGGIE
Sbjct: 361 KSYEGAIRDALAHPEMHSIAVLYCQTAVLDPRELAEIVIREYNESGRKKPLVVAIVGGIE 420
Query: 421 AKEAIDTLNENGIPAYPEPERAVKALSALYRWSKWKAKHK 460
AKEAID LNENGIPAYPEPERA+KALSALY+WSKWKAKHK
Sbjct: 421 AKEAIDMLNENGIPAYPEPERAIKALSALYKWSKWKAKHK 460
>emb|CAC12278.1| (AL445066) probable acetyl-CoA synthetase [Thermoplasma
acidophilum]
Length = 698
Score = 407 bits (1035), Expect = e-112
Identities = 219/452 (48%), Positives = 301/452 (66%), Gaps = 13/452 (2%)
Query: 1 MSLEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKV 60
M L++LF P+S+AVIGAS+ KIGY I++NL E GY+GK+YPVN KGG + + V
Sbjct: 6 MDLKSLFYPESVAVIGASADKTKIGYQIVRNLKEGGYQGKVYPVNRKGGNI----LGYTV 61
Query: 61 YKSILEVPDEVDMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQLV 120
Y SI +VPD+VD+AII VPA+ P+ EECG+KGV + +++SGF E+G K +E QLV
Sbjct: 62 YPSIGDVPDKVDLAIISVPAEHTPEAAEECGKKGVFGIIVVASGFSEVGR--KDLEDQLV 119
Query: 121 ETARKYGMRILGPNIFGVVYTPAKLNGTFGPTDVLPGPLALISQSGALGIALMGWTILEK 180
E RKY MR+LGPN+ G++ KLN +F P PG + ++SQSGAL + L T K
Sbjct: 120 EVCRKYNMRLLGPNVVGLMNNVLKLNASFAPYLPYPGTIGMVSQSGALIVGLDAMTWSNK 179
Query: 181 IGLSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKKKPII 240
G S ++S+GN AD+D +DL+ F +D N I +Y EG+K GRRF++ A+ + KKPI+
Sbjct: 180 TGTSFLISIGNMADLDFSDLVSFLAEDNNVSCISLYTEGLKAGRRFIDTARSI--KKPIV 237
Query: 241 VIKAGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALSNLPEPQ 300
++K+G S+ G+ AAASHTGSLAGS +Y A KQ+GV+RA +I E FD + LS P
Sbjct: 238 MLKSGISKHGSVAAASHTGSLAGSHRVYDGALKQAGVVRANSIEELFDLSLTLSLQPPMG 297
Query: 301 GDNVVIITNGGGIGVMATDAAEEEGLKLY---DDLEQLKIFANHMPPFGSYKNPVDLTGM 357
GDN++++TNGGGIGV+ATD AE G+ L DDL Q KI +P FGS KNP+D++ M
Sbjct: 298 GDNLMVVTNGGGIGVLATDQAELSGIPLQTPSDDL-QAKI-RQVIPSFGSTKNPIDMSAM 355
Query: 358 ADAKSYEGAIRDALNHPEMHSIIVLYCQTAVLDPRDLAEIIIREYNESGRKKPLVVAIVG 417
A + Y I+ + + ++VLYC+ A LDP D A+ II S RK P+V VG
Sbjct: 356 ATPEIYADTIKTVMEDDSVDGLVVLYCEVANLDPSDAAKGIINGVLSSNRKIPVVAGFVG 415
Query: 418 GIEAKEAIDTLNENGIPAYPEPERAVKALSAL 449
G +K A L +NGIP + P++AVKA++AL
Sbjct: 416 GEHSKNASLYLIKNGIPTFDSPDKAVKAMAAL 447
>pir||A75021 succinyl-coa synthetase alpha chain related protein PAB1230 -
Pyrococcus abyssi (strain Orsay)
>gi|5459121|emb|CAB50607.1| (AJ248288) SUCCINYL-COA
SYNTHETASE ALPHA SUBUNIT RELATED PROTEIN [Pyrococcus
abyssi]
Length = 466
Score = 404 bits (1027), Expect = e-111
Identities = 216/466 (46%), Positives = 307/466 (65%), Gaps = 22/466 (4%)
Query: 3 LEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKVYK 62
L+ LF P+S+AVIGAS PGK+G AI+++L+ G+ GKIY VN+KGGE+E++G+KFKVY+
Sbjct: 6 LDFLFYPRSVAVIGASHVPGKVGNAILRSLVN-GFNGKIYAVNVKGGEIEVNGKKFKVYR 64
Query: 63 SILEVPDEVDMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQLVET 122
S+ E+PDEVD+A+I VPAKFVP V++ECG+KGVK V +IS+GF E G +E++LV+
Sbjct: 65 SVKEIPDEVDVAVIAVPAKFVPDVIDECGEKGVKGVVVISAGFKEAGRAD--LEEELVKR 122
Query: 123 ARKYGMRILGPNIFGVVYTPAKLNGTFGPTDVLP----GPLALISQSGALGIALMGWTIL 178
ARK+G+R++GPN GV + F P + GP+A +SQSGA G A++ W
Sbjct: 123 ARKWGIRVVGPNCLGVTNIENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWAAR 182
Query: 179 EKIGLSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKKKP 238
++G+S +S+GN AD+D++D + + KDD T+ I Y+EGVKDGR+F AKE +K KP
Sbjct: 183 HEVGMSKFISLGNMADLDESDFMLYLKDDPKTKVITAYIEGVKDGRKFFNAAKETTKVKP 242
Query: 239 IIVIKAGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALSNLPE 298
+I++KAGR+E GAKAAASHTGSLAGS IY AAFKQSGVL A ++ + F++A+AL+
Sbjct: 243 VIILKAGRTEAGAKAAASHTGSLAGSYKIYEAAFKQSGVLMAKSMRQLFNYAKALAMQNP 302
Query: 299 PQGDNVVIITNGGGIGVMATDAAEEEGLKLYDDLEQLK------IFANHMPPFGSYKNPV 352
+GD V I+TNGGG GVM +D E GLKL + E+ K I +P SY+NPV
Sbjct: 303 AKGDRVAIVTNGGGAGVMMSDGLLEHGLKLAEFTEETKEKFRKAIEEGKLPEHMSYRNPV 362
Query: 353 DLTGMADAKSYEGAIRDALNHPEMHSIIVL-YCQTAVLDPRDLAEII--IREYNESGRKK 409
D+ G A + YE AIR L P + ++V+ Q+ LD + +++ ++EY K
Sbjct: 363 DVIGDAPSSRYEVAIRYVLEDPNVDIVVVIALFQSPALD-EGIVDVMGRVKEYG-----K 416
Query: 410 PLVVAIVGGIEAKEAIDTLNENGIPAYPEPERAVKALSALYRWSKW 455
P+V GG + + + GIP + E V A+ AL + K+
Sbjct: 417 PIVFVAPGGEFPEAMARRIEKVGIPVFETVEDGVDAVYALVSYGKY 462
>pir||G71124 hypothetical protein PH0766 - Pyrococcus horikoshii
>gi|3257174|dbj|BAA29857.1| (AP000003) 457aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 457
Score = 401 bits (1019), Expect = e-111
Identities = 226/458 (49%), Positives = 299/458 (64%), Gaps = 16/458 (3%)
Query: 3 LEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKVYK 62
L+ FNPK IAVIGAS+ P K+GY + KNL EY +GK+YPVNIK E E+ G K YK
Sbjct: 2 LDYFFNPKGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIK--EEEVQG--VKAYK 56
Query: 63 SILEVPDEVDMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQLVET 122
S+ ++PDE+D+AIIVVP +FV + +CG+KGVK V II++GFGE GEEGK+ E++LVE
Sbjct: 57 SVKDIPDEIDLAIIVVPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEI 116
Query: 123 ARKYGMRILGPNIFGVVYTPAKLNGTFGPTDVLPGPLALISQSGALGIALMGWTILEKIG 182
A KYGMRI+GPN G++ T LN TF T G +A ISQSGALG ++ TI E IG
Sbjct: 117 AHKYGMRIIGPNCVGIMNTHVDLNATF-ITVAKKGNVAFISQSGALGAGIVYKTIKEDIG 175
Query: 183 LSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKKKPIIVI 242
S +SVGN AD+D A+L+E+ D E +AI +Y+EGV++G++FMEVAK V+KKKPII +
Sbjct: 176 FSKFISVGNMADVDFAELMEYLADTEEDKAIALYIEGVRNGKKFMEVAKRVTKKKPIIAL 235
Query: 243 KAGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALSNLPEPQGD 302
KAG+SE GA+AA+SHTGSLAGS IY AAFKQSGVL A TI E ARA S P P+G+
Sbjct: 236 KAGKSESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFSQ-PLPRGN 294
Query: 303 NVVIITNGGGIGVMATDAAEEEGLKL----YDDLEQLKIFANHMPPFGSYKNPVDLTGMA 358
V I+TN GG GV+ D ++ GLKL +E+L+ F +PP + KNPVD+ A
Sbjct: 295 KVAIMTNAGGPGVLTADELDKRGLKLATLEEKTIEELRSF---LPPMAAVKNPVDMIASA 351
Query: 359 DAKSYEGAIRDALNHPEMHSIIVLYC--QTAVLDPRDLAEIIIREYNESGRKKPLVVAIV 416
+ Y + L P + +I + A + + AE IIR E +KP++ +
Sbjct: 352 RGEDYYRTAKLLLQDPNVDMLIAICVVPTFAGMTLTEHAEGIIRAVKEVNNEKPVLAMFM 411
Query: 417 GGIEAKEAIDTLNENGIPAYPEPERAVKALSALYRWSK 454
G +++A + L +NGIP Y PE A AL +K
Sbjct: 412 AGYVSEKAKELLEKNGIPTYERPEDVASAAYALVEQAK 449
>pir||D75038 hypothetical protein PAB0854 - Pyrococcus abyssi (strain Orsay)
>gi|5458714|emb|CAB50201.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 457
Score = 395 bits (1005), Expect = e-109
Identities = 222/458 (48%), Positives = 297/458 (64%), Gaps = 16/458 (3%)
Query: 3 LEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKVYK 62
L+ FNPK IAVIGAS+ P K+GY + KNL +Y G +YPVN++ E E+ G K YK
Sbjct: 2 LDYFFNPKGIAVIGASNDPKKLGYEVFKNLKQYK-GGNVYPVNVR--EEEVQG--VKAYK 56
Query: 63 SILEVPDEVDMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQLVET 122
S+ ++P EVD+AIIVVP KFV + +CG+KGVK V II++GFGE GEEGKK E++LVE
Sbjct: 57 SVKDIPGEVDLAIIVVPKKFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKKEEKELVEI 116
Query: 123 ARKYGMRILGPNIFGVVYTPAKLNGTFGPTDVLPGPLALISQSGALGIALMGWTILEKIG 182
A +YGMRI+GPN G++ T A LN TF T G +A ISQSGALG ++ TI E IG
Sbjct: 117 AHRYGMRIIGPNCVGIMNTHADLNATF-ITVAKKGNVAFISQSGALGAGIVYKTIKEDIG 175
Query: 183 LSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKKKPIIVI 242
S +SVGN AD+D A+L+E+ D E +AI +Y+EG+++GR+F+EVAK V+KKKP+I +
Sbjct: 176 FSKFISVGNMADLDFAELMEYLADTEEDKAIALYIEGIRNGRKFIEVAKRVTKKKPVIAL 235
Query: 243 KAGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALSNLPEPQGD 302
KAG+SE GA+AA+SHTGSLAGS IY AAFKQSGVL A TI E ARA + P P+G
Sbjct: 236 KAGKSESGARAASSHTGSLAGSWKIYEAAFKQSGVLVANTIDEMLSMARAFTQ-PLPRGK 294
Query: 303 NVVIITNGGGIGVMATDAAEEEGLKLYD----DLEQLKIFANHMPPFGSYKNPVDLTGMA 358
V I+TN GG GV+ D ++ GLKL + +E+L+ F +PP + KNPVD+ A
Sbjct: 295 RVAIMTNAGGPGVLTADELDKRGLKLANLEEKTIEELRSF---LPPMAAVKNPVDMIASA 351
Query: 359 DAKSYEGAIRDALNHPEMHSIIVLYC--QTAVLDPRDLAEIIIREYNESGRKKPLVVAIV 416
+ Y + L P + +I + A + P + AE IIR E KP++ +
Sbjct: 352 RGEDYYRTAKLLLQDPNVDMLIAICVVPTFAGMTPTEHAEGIIRAIKEVNNGKPVLAMFM 411
Query: 417 GGIEAKEAIDTLNENGIPAYPEPERAVKALSALYRWSK 454
G +++A + L +NGIP Y PE A AL +K
Sbjct: 412 AGYVSEKAKELLEKNGIPTYERPEDVASAAYALVEQAK 449
>pir||E71189 hypothetical protein PH1789 - Pyrococcus horikoshii
>gi|3258225|dbj|BAA30908.1| (AP000007) 472aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 472
Score = 391 bits (994), Expect = e-108
Identities = 207/463 (44%), Positives = 294/463 (62%), Gaps = 16/463 (3%)
Query: 3 LEALFNPKSIAVIGASSKPGKIGYAIMKNLI---EYG-YEGKIYPVNIKGGEMEISGRKF 58
L F PK++A+IGA++K GK+G I +N E G ++G IYPVN K E+E +
Sbjct: 10 LRPFFEPKAVAIIGATNKKGKVGNVIFENFKKNKEKGIFKGNIYPVNPKLDEIE----GY 65
Query: 59 KVYKSILEVPDEVDMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQ 118
KVY + E+PD+ D+A+I +PA VP+ + + G+KG+K V II+ GFGELGEEGK++EQ+
Sbjct: 66 KVYHDVSELPDDTDLAVIAIPAPAVPETMRKIGEKGIKSVIIITGGFGELGEEGKRMEQE 125
Query: 119 LVETARKYGMRILGPNIFGVVYTPAKLNGTFGPTDVLP----GPLALISQSGALGIALMG 174
++E AR G+R++GPN GV ++ F P + + GP+A ISQSGA A++
Sbjct: 126 ILEIARANGIRVIGPNCVGVYVPDTGVDTVFLPDEKMDRPPSGPIAFISQSGAFAAAMLD 185
Query: 175 WTILEKIGLSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVS 234
W + IG+ +VS GNK D+DDADL+E+F D+ + + Y+EGVKDGR+FME AK V+
Sbjct: 186 WAAMAGIGIGKMVSYGNKIDVDDADLMEYFAHDDEIKVMTFYIEGVKDGRKFMETAKRVT 245
Query: 235 KKKPIIVIKAGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALS 294
K KPII +K+GR+E GAKAA+SHTGSLAG D IY A FKQ+G++RA FD A+A +
Sbjct: 246 KIKPIIALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAKAFA 305
Query: 295 NLPEPQGDNVVIITNGGGIGVMATDAAEEEGLKLYD-DLEQLKIFANHMPPFGSYKNPVD 353
P+GD + IIT+GGG GVMA+DA + GLKL + E +K PP NP D
Sbjct: 306 KCKLPKGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLRERFPPHAVVGNPTD 365
Query: 354 LTGMADAKSYEGAIRDALNHPEMHSI-IVLYCQTAVLDPRDLAEIIIREYNESGRKKPLV 412
+ G DA+ Y A+ P + +I +++ Q +LD ++ II +S KP+V
Sbjct: 366 VVGDTDAERYRLALEAFTKDPNVDAILLIVLFQVPLLDEEEVINIITDYAKKS--DKPIV 423
Query: 413 VAIVGGIEAKEAIDTLNENGIPAYPEPERAVKALSALYRWSKW 455
V +GG + + L E GIP YP PER V+AL+ L R++K+
Sbjct: 424 VVSMGGYKTDKYARMLEERGIPVYPTPERGVRALAGLVRYAKY 466
>pir||E75149 succinyl-coa synthetase alpha chain related protein PAB2112 -
Pyrococcus abyssi (strain Orsay)
>gi|5457786|emb|CAB49276.1| (AJ248284) SUCCINYL-COA
SYNTHETASE ALPHA CHAIN related protein [Pyrococcus
abyssi]
Length = 472
Score = 391 bits (993), Expect = e-107
Identities = 204/463 (44%), Positives = 297/463 (64%), Gaps = 16/463 (3%)
Query: 3 LEALFNPKSIAVIGASSKPGKIGYAIMKNLI---EYG-YEGKIYPVNIKGGEMEISGRKF 58
L F P+++A+IGA++K GK+G I +N E G ++G IYPVN K E++ +
Sbjct: 10 LRPFFEPRAVAIIGATNKKGKVGNVIFENFKRNKEKGIFKGNIYPVNPKLDEID----GY 65
Query: 59 KVYKSILEVPDEVDMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQ 118
KVY + E+PD+ D+A+I +PA VP+ +++ +KG+K V II+ GFGELGEEGK++EQ+
Sbjct: 66 KVYHDVSELPDDTDLAVIAIPAPAVPETMKKIAEKGIKAVIIITGGFGELGEEGKRMEQE 125
Query: 119 LVETARKYGMRILGPNIFGVVYTPAKLNGTFGPTDVLP----GPLALISQSGALGIALMG 174
++E AR G+R++GPN GV ++ F P + + GP+A ISQSGA A++
Sbjct: 126 ILEIARANGIRVIGPNCVGVYAPDTGVDTVFLPEEKMDRPKSGPIAFISQSGAFAAAMLD 185
Query: 175 WTILEKIGLSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVS 234
W + IG+ +VS GNK D+DDADL+E+F D+ + + Y+EGVKDGR+FME AK V+
Sbjct: 186 WAAMAGIGIGKMVSYGNKIDVDDADLMEYFAQDDEIKVMTFYIEGVKDGRKFMETAKRVT 245
Query: 235 KKKPIIVIKAGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALS 294
K KPII +K+GR+E GAKAA+SHTGSLAG D IY A FKQ+G++RA FD A+A +
Sbjct: 246 KIKPIIALKSGRTEYGAKAASSHTGSLAGQDVIYDAVFKQTGIIRAEDFEHMFDLAKAFA 305
Query: 295 NLPEPQGDNVVIITNGGGIGVMATDAAEEEGLKLYD-DLEQLKIFANHMPPFGSYKNPVD 353
P+GD + IIT+GGG GVMA+DA + GLKL + E +K PP NP D
Sbjct: 306 KCKLPKGDRIGIITDGGGAGVMASDAVAKFGLKLAELSEETIKFLKERFPPHAVVGNPTD 365
Query: 354 LTGMADAKSYEGAIRDALNHPEMHSI-IVLYCQTAVLDPRDLAEIIIREYNESGRKKPLV 412
+ G DA+ Y A+ + P + +I +++ Q +LD +++ +II +S KP+V
Sbjct: 366 VVGDTDAERYRLALEAFIKDPNVDAILLIVLFQVPLLDEKEVIDIITDYAKKS--DKPIV 423
Query: 413 VAIVGGIEAKEAIDTLNENGIPAYPEPERAVKALSALYRWSKW 455
V +GG + + L E GIP YP PER V+AL+ L R++K+
Sbjct: 424 VVSMGGYKTDKYAKMLEERGIPVYPTPERGVRALAGLVRYAKY 466
>pir||T35770 hypothetical protein SC8A6.03c SC8A6.03c - Streptomyces coelicolor
>gi|3288603|emb|CAA19775.1| (AL031013) hypothetical
protein SC8A6.03c [Streptomyces coelicolor A3(2)]
Length = 714
Score = 388 bits (986), Expect = e-107
Identities = 202/460 (43%), Positives = 299/460 (64%), Gaps = 15/460 (3%)
Query: 2 SLEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKVY 61
S+ L P S+AVIGAS +PGKIG ++M+NL++ G+ G+I+PVN K + I GRK Y
Sbjct: 254 SMRRLMQPASVAVIGASGEPGKIGNSVMRNLVDGGFAGEIHPVNPKADD--ILGRK--AY 309
Query: 62 KSILEVPDEVDMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQLVE 121
KS+ +VP EVD+A+ +PA+FV +EE G+K + +I SGF E GE+ ++ ++V
Sbjct: 310 KSVTDVPGEVDVAVFAIPARFVAAALEEVGRKRIPNAVLIPSGFAETGEQA--LQDEIVA 367
Query: 122 TARKYGMRILGPNIFGVVYTPAKLNGTFGPTDVLPGPLALISQSGALGIALMGWTILEKI 181
A ++G+R+LGPNI+G T L TF + G +AL SQSG +G+A++G+ K
Sbjct: 368 VAERHGVRLLGPNIYGYYSTWQDLCATFCTPYDVKGGVALTSQSGGIGMAILGFARTTKT 427
Query: 182 GLSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKKKPIIV 241
G+SA+V +GNK+D+D+ DLL +F +D +T I +++E +KDGR F+E A+ +KP++V
Sbjct: 428 GVSAIVGLGNKSDLDEDDLLTWFGEDPHTECIAMHLEDLKDGRAFVEAARATVPRKPVVV 487
Query: 242 IKAGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALSNLPEPQG 301
+KAGR+ GAKAA SHTG+LAG D +Y +Q+GV+RA + E ++ARAL LP P+G
Sbjct: 488 LKAGRTAAGAKAAGSHTGALAGDDAVYDDILRQAGVIRAPGLNEMLEYARALPVLPAPEG 547
Query: 302 DNVVIITNGGGIGVMATDAAEEEGLKLYD---DLEQLKIFANHMPPFGSYKNPVDLTGMA 358
DNVVIIT GG GV+ +DA + GL L + DL+ + F +PPFG+ NPVD+TG
Sbjct: 548 DNVVIITGAGGSGVLLSDAVTDNGLSLMEIPPDLD--RAFRAFIPPFGAAGNPVDITGGE 605
Query: 359 DAKSYEGAIRDALNHPEMHSIIVLYCQTAVLDPRDLAEI---IIREYNESGRKKPLVVAI 415
+YE IR L P +H++++ Y T V P AE+ ++ E+ E G +KP+V ++
Sbjct: 606 PPSTYEATIRLGLEDPRIHALVLGYWHTIVTPPMVFAELTARVVAEFRERGVEKPVVASL 665
Query: 416 VGGIEAKEAIDTLNENGIPAYP-EPERAVKALSALYRWSK 454
G +E +EA L E G+ AYP E+ V L A YRW++
Sbjct: 666 AGDVEVEEACQYLFERGVVAYPYTTEKPVAVLGAKYRWAR 705
>pir||H71207 hypothetical protein PH1928 - Pyrococcus horikoshii
>gi|3258372|dbj|BAA31055.1| (AP000007) 466aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 466
Score = 387 bits (983), Expect = e-106
Identities = 206/468 (44%), Positives = 306/468 (65%), Gaps = 22/468 (4%)
Query: 1 MSLEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKV 60
++L+ LF P+S+AVIGAS PGK+G I+++L+ + GKIY VN+KGGE+E++G+KFKV
Sbjct: 4 VNLDFLFYPESVAVIGASHVPGKVGNGILRSLVN-NFRGKIYAVNVKGGEIEVNGKKFKV 62
Query: 61 YKSILEVPDEVDMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQLV 120
YKSI +VPD+VD+A+I VPAKFVP+V++ECG+KGVK V +IS+GF E G +E++LV
Sbjct: 63 YKSIKDVPDKVDVAVIAVPAKFVPEVIDECGEKGVKGVVVISAGFKEAGRAD--LEEELV 120
Query: 121 ETARKYGMRILGPNIFGVVYTPAKLNGTFGPTDVLP----GPLALISQSGALGIALMGWT 176
+ A+K+G+R++GPN GV + F P + GP+A +SQSGA G A++ W
Sbjct: 121 KRAKKWGIRVVGPNCLGVTNLENGFDCNFNPPERQARPKFGPIAFMSQSGAFGAAILDWA 180
Query: 177 ILEKIGLSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKK 236
++G+S +S+GN AD+D++D + + K+D T+ I Y+EGVKDG++F VAKE +K
Sbjct: 181 ARHEVGMSKFISLGNMADLDESDFMLYLKNDPKTKVITAYIEGVKDGKKFFNVAKETTKV 240
Query: 237 KPIIVIKAGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALSNL 296
KP+IV+KAGR+E GAKAAASHTGSLAGS IY A F+Q+G+L A ++ + F++A+AL+
Sbjct: 241 KPVIVLKAGRTEAGAKAAASHTGSLAGSYRIYEAVFEQTGILAAKSMRQLFNYAKALAMQ 300
Query: 297 PEPQGDNVVIITNGGGIGVMATDAAEEEGLKLYDDLEQLK------IFANHMPPFGSYKN 350
GD V I+TNGGG GVM +D E GLKL + E+ K I +P SY N
Sbjct: 301 KPANGDRVAIVTNGGGAGVMMSDGLLERGLKLAELSEETKDKFRKAIEEGKLPEHMSYAN 360
Query: 351 PVDLTGMADAKSYEGAIRDALNHPEMHSI-IVLYCQTAVLDPRDLAEII--IREYNESGR 407
PVD+ G A + YE AI L P + + ++ Q+ LD + +++ +++Y
Sbjct: 361 PVDVIGDAPSSRYELAINYVLEDPNVDILAVIALFQSPALD-EGIVDVMDRVKKYG---- 415
Query: 408 KKPLVVAIVGGIEAKEAIDTLNENGIPAYPEPERAVKALSALYRWSKW 455
KP+V GG ++ + + G+P + E V A+ AL ++ K+
Sbjct: 416 -KPIVFIAPGGEFPEKIARRIEKVGVPVFETVEDGVDAVYALVKYGKY 462
>sp|Q58010|Y590_METJA HYPOTHETICAL PROTEIN MJ0590 >gi|2128020|pir||F64373 hypothetical
protein homolog MJ0590 - Methanococcus jannaschii
>gi|1591298|gb|AAB98580.1| (U67507) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 704
Score = 378 bits (961), Expect = e-104
Identities = 210/462 (45%), Positives = 300/462 (64%), Gaps = 18/462 (3%)
Query: 3 LEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKVYK 62
L+ + PKS+A+IGAS GK+GYAIMKNL ++ GKIYP+N K E I G K YK
Sbjct: 8 LKYISYPKSVAIIGASKTEGKVGYAIMKNLKDFN--GKIYPINPKYDE--IFG--IKCYK 61
Query: 63 SILEVPDEVDMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQLVET 122
S+L+V D++D+A+IVVP VP+V+EECG+KGVK II++GF E+G ++E ++ E
Sbjct: 62 SVLDVEDDIDLAVIVVPNIVVPKVLEECGKKGVKGAVIITAGFSEVGNY--ELENKIKEI 119
Query: 123 ARKYGMRILGPNIFGVVYTPAKLNGTFGPTDVLPGPLALISQSGALGIALMGWTILEKIG 182
A++Y +RI+GPN G++ T LN TF G +++ISQSGA+ A++ L IG
Sbjct: 120 AKRYNIRIIGPNCLGIMNTHINLNATFAKVFPPKGGVSIISQSGAVLNAILDIAPLLNIG 179
Query: 183 LSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKKKPIIVI 242
S VVS+GNKADI ++DLLE+F DDE+T+ +++Y+EG+KD +RF++VAK++SKKKPII +
Sbjct: 180 FSKVVSIGNKADIQESDLLEYFLDDEDTKIVVLYIEGLKD-KRFLKVAKKLSKKKPIIAL 238
Query: 243 KAGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALSNLPEPQGD 302
K+GR+E G KAA SHTGSLAG D IY AAFK++G++RA T E D S P +
Sbjct: 239 KSGRTEVGKKAAKSHTGSLAGEDVIYEAAFKEAGIIRAYTFEELVDLIHLFSTQPTISSN 298
Query: 303 NVVIITNGGGIGVMATDAAEEEGLKLYD----DLEQLKIFANHMPPFGSYKNPVDLTGMA 358
+ IITN GG GV+A D+ + +KL + +E+LK N +PP + NP+D+ G A
Sbjct: 299 EIGIITNAGGFGVLAADSCVDYNMKLSNFEKSTIEKLK---NILPPTANISNPLDIIGDA 355
Query: 359 DAKSYEGAIRDALNHPEMHSIIVLYCQTAVLDPRDLAEIIIREYN--ESGRKKPLVVAIV 416
+ Y+ I + ++V+ + P ++A+ II N + + KPL+ + V
Sbjct: 356 TPERYKKVIEVLAEDSNVKGLLVILTPQEMTKPLEVAKSIIEVKNSHKEFKNKPLITSFV 415
Query: 417 GGIEAKEAIDTLNENGIPAYPEPERAVKALSALYRWSKWKAK 458
GG+ K A L +NGIPAY PE VKALS LY++S K K
Sbjct: 416 GGVSVKGAKSYLRKNGIPAYITPENGVKALSHLYKYSLMKVK 457
>gi|11498810 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7448044|pir||B69401 conserved hypothetical protein
AF1211 - Archaeoglobus fulgidus
>gi|2649370|gb|AAB90033.1| (AE001020) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 685
Score = 363 bits (923), Expect = 2e-99
Identities = 201/459 (43%), Positives = 293/459 (63%), Gaps = 17/459 (3%)
Query: 3 LEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKVYK 62
+E LF PK +AVIGAS + GK+G IMKNL + G +Y VN K EI G F Y
Sbjct: 1 MERLFYPKVVAVIGASPQEGKVGNTIMKNL--RNFSGTVYAVNPK--YREILG--FPCYP 54
Query: 63 SILEVPDEVDMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQLVET 122
S+L++P+ VD+AIIVVPAK VP+ VEECG+K V+ +IS+GF E G EG K+E++LVE
Sbjct: 55 SVLKIPENVDLAIIVVPAKLVPKAVEECGRKDVEGAVVISAGFKEAGIEGAKLERELVEV 114
Query: 123 ARKYGMRILGPNIFGVVYTPAKLNGTFGPTDVLPGPLALISQSGALGIALMGWTILEKIG 182
A +YG++++GPN G++ T +N TF G +A +SQSGA +A++ W+ +G
Sbjct: 115 AERYGVKLVGPNCLGMINTEIAMNATFSRVAPEKGRIAFLSQSGAFILAVLEWSKRNGVG 174
Query: 183 LSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKKKPIIVI 242
S VVS+GNKA +D++D LE+ D++T ILIYMEGV+DGR+FM VAK V+++KP++V+
Sbjct: 175 FSKVVSLGNKAMLDESDFLEYLAKDDSTDVILIYMEGVEDGRKFMRVAKSVARRKPVVVM 234
Query: 243 KAGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALSNLPEPQGD 302
KAG+S+ GAKAA+SHTGSLAGS Y AAF+QSGV+ A ++ E FD+A L L +
Sbjct: 235 KAGKSQSGAKAASSHTGSLAGSYEAYRAAFRQSGVIEASSVEELFDFALLL--LKYRKAG 292
Query: 303 NVVIITNGGGIGVMATDAAEEEGLKLYD-DLEQLKIFANHMPPFGSYKNPVDLTGMADAK 361
N+ I+TN GG GVMA DA ++ G+ L + + E ++ +P ++ NPVD+ G A A+
Sbjct: 293 NLAILTNSGGPGVMAADACDQFGVPLANFNFETIRKLKEFLPAESNFYNPVDILGDASAE 352
Query: 362 SYEGAIRDALNHPEMHSIIVLYCQTAVLDPRDLAEIIIREYNESGRKKPLVVAIVGGIEA 421
+ +++ + ++ + TA +D AE ++ K V +GG
Sbjct: 353 RFSRSLQILSEDENVDIVLTILTPTAQMDFLKAAESVV--------GKNAVCCFMGGESV 404
Query: 422 KEAIDTLNENGIPAYPEPERAVKALSALYRWSKWKAKHK 460
E+ L +GIP + +P RAV+A+S L R+SK AK +
Sbjct: 405 DESERILRSSGIPNFFDPVRAVRAISVLGRYSKISAKER 443
>pir||F75054 hypothetical protein PAB1431 - Pyrococcus abyssi (strain Orsay)
>gi|5458844|emb|CAB50331.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 442
Score = 335 bits (851), Expect = 5e-91
Identities = 191/446 (42%), Positives = 275/446 (60%), Gaps = 16/446 (3%)
Query: 3 LEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKVYK 62
++ F PKS+A+ G S + G I I++N++E G+EGKI PVN KGG +E++GR+F++ K
Sbjct: 1 MDYFFYPKSVAIFG-SFREGAIAREILRNIVEGGFEGKIIPVNPKGGTVEVAGRRFEIRK 59
Query: 63 SILEVPDEVDMAIIVVPAKFVPQVVEECGQKGV-KVVPIISSGFGELGEEGKKVEQQLVE 121
+ E EVD++I+V+PAK VP ++ E KG+ K +IS+GF E+G +E++L++
Sbjct: 60 RLEE---EVDVSIVVIPAKLVPGLIREL--KGLTKGAVVISAGFSEVGNVD--LEEELIK 112
Query: 122 TARKYGMRILGPNIFGVVYTPAKLNGTFGPTDVLPGPLALISQSGALGIALMGWTILEKI 181
A++ G+RI+GPN G+ K G+F V PG LALISQSGA G A + E +
Sbjct: 113 AAKEAGIRIIGPNCAGIFGVHGKFFGSF-EVRVNPGGLALISQSGAFGGAALAMGNEENV 171
Query: 182 GLSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKKKPIIV 241
G SA VS GN AD+D++D L +F DDENT+ I +Y+EGVKDGR+F E K + KKP+I+
Sbjct: 172 GFSAFVSYGNAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPVII 231
Query: 242 IKAGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALSNLPEPQG 301
+KAG+SE GAKAA SHTGSLAGS IY A FKQ + + E FD A+A + + G
Sbjct: 232 LKAGKSESGAKAAQSHTGSLAGSYEIYKAVFKQGNAIEVEEMEELFDAAKAF-EMYQSAG 290
Query: 302 DNVVIITNGGGIGVMATDAAEEEGLKLYD-DLEQLKIFANHMPPFGSYKNPVDLTGMADA 360
V +ITN GG GV+ATD E+ GL++ E + +PP S +NP+DL AD
Sbjct: 291 SRVAVITNSGGPGVLATDKLEKLGLEIARLSEETVAKLREFLPPQCSTRNPIDLIADADY 350
Query: 361 KSYEGAIRDALNHPEMHSIIVLYCQTAVLDPRDLAEIIIREYNESGRKKPLVVAIVGGIE 420
+ Y I + S++V+ + ++A II E+ KP++V + G
Sbjct: 351 ERYRRTIEVVCQDENVDSLLVICVPPIFIPSEEIARAII----EAKCNKPIIVNFMAGEL 406
Query: 421 AKEAIDTLNENGIPAYPEPERAVKAL 446
K+ ++ LN +GI +P PERA KAL
Sbjct: 407 VKKGVELLNAHGIKNFPTPERAAKAL 432
>pir||H71106 hypothetical protein PH0625 - Pyrococcus horikoshii
>gi|3257031|dbj|BAA29714.1| (AP000003) 440aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 440
Score = 334 bits (847), Expect = 1e-90
Identities = 193/446 (43%), Positives = 274/446 (61%), Gaps = 16/446 (3%)
Query: 3 LEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKVYK 62
++ F PKS+A+ G+ K G I I++N++E G+EGKI PVN KGGE+E+SGR+F + +
Sbjct: 1 MDYFFYPKSVAIFGSFRK-GSIAREILRNIVEGGFEGKIIPVNPKGGEVEVSGRRFIIKR 59
Query: 63 SILEVPDEVDMAIIVVPAKFVPQVVEECGQKGV-KVVPIISSGFGELGEEGKKVEQQLVE 121
+ E VD++IIV+PAK VP ++ E KG+ K +IS+GF E+G ++E++L+
Sbjct: 60 KLDEF---VDVSIIVIPAKLVPGLIREL--KGLTKGAVVISAGFSEVGNV--ELEEELIR 112
Query: 122 TARKYGMRILGPNIFGVVYTPAKLNGTFGPTDVLPGPLALISQSGALGIALMGWTILEKI 181
A++ G+RI+GPN G+ K G+F V PG LALISQSGA G A + E +
Sbjct: 113 AAKESGIRIIGPNCAGIFGVHGKFFGSF-EVRVNPGGLALISQSGAFGGAALAMGNEENV 171
Query: 182 GLSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKKKPIIV 241
G SA VS GN AD+D++D L +F DDENT+ I +Y+EGVKDGR+F E K + KKP+I+
Sbjct: 172 GFSAFVSYGNAADLDESDFLRYFADDENTKVIALYIEGVKDGRKFFEALKYATSKKPVII 231
Query: 242 IKAGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALSNLPEPQG 301
+KAG+S+ GAKAA SHTGSLAGS IY AAFKQ+ + + E FD A+A E G
Sbjct: 232 LKAGKSKSGAKAAQSHTGSLAGSYEIYQAAFKQANAIEVEEMEELFDAAKAFEMYKE-AG 290
Query: 302 DNVVIITNGGGIGVMATDAAEEEGLKLYDDLEQ-LKIFANHMPPFGSYKNPVDLTGMADA 360
V +ITN GG GV+ATD E+ GL++ E +K +PP S KNP+DL AD
Sbjct: 291 SRVAVITNSGGPGVLATDKLEKLGLEIAQLSEDTVKKLREFLPPQCSTKNPIDLIADADY 350
Query: 361 KSYEGAIRDALNHPEMHSIIVLYCQTAVLDPRDLAEIIIREYNESGRKKPLVVAIVGGIE 420
+ Y+ I + S++V+ + ++A II E+ KP++V + G
Sbjct: 351 ERYKRTIEIVCQDENVDSLLVICVPPIFIPSEEIARAII----EAKCDKPIIVNFMSGEL 406
Query: 421 AKEAIDTLNENGIPAYPEPERAVKAL 446
+ LN++ I +P PERA KAL
Sbjct: 407 VANGVKLLNDHDIKNFPTPERAAKAL 432
>gb|AAD44021.1|AF107206_1 (AF107206) acetyl-CoA synthetase [Giardia intestinalis]
Length = 726
Score = 333 bits (846), Expect = 2e-90
Identities = 185/458 (40%), Positives = 274/458 (59%), Gaps = 12/458 (2%)
Query: 3 LEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKVYK 62
L L NP S+AVIGAS GK+G ++ N+ E GY GK+YP+N EI G +K YK
Sbjct: 15 LSFLTNPASVAVIGASPNAGKVGNTVVTNIKESGYTGKVYPINPTA--TEILG--YKTYK 70
Query: 63 SILEVPDEVDMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQLVET 122
S+L+VPD +D+ I+V+P+K V +EC QK VK + +I++GF E+G EG ++EQ L +
Sbjct: 71 SVLDVPDSIDVVIVVIPSKAVLAAAKECAQKKVKSLVVITAGFKEIGGEGVQMEQDLTKI 130
Query: 123 ARKYGMRILGPNIFGVVYTPAKLNGTFGPTDVLPGPLALISQSGALGIALMGWTILEKIG 182
+ G+R++GPN G+V TP LN TF G +A +SQSGA+ +++ W + IG
Sbjct: 131 CKDAGIRLVGPNCLGIV-TP-NLNCTFASAKPSKGSIAFLSQSGAMLTSILDWALTNGIG 188
Query: 183 LSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKKKPIIVI 242
S +S+GNKAD+D+ DL+ +D NT IL+Y+E + DGR+F+E KKP+I++
Sbjct: 189 FSNFISLGNKADVDEVDLIMEVAEDPNTDIILLYLESIVDGRKFLEQIPTCVHKKPVIIL 248
Query: 243 KAGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALSNLPEPQGD 302
K+G S GA AA+SHTG+LAG+D + AF+++GVLRA T+ + FD R + P+GD
Sbjct: 249 KSGTSAAGAAAASSHTGALAGNDIAFDLAFEKAGVLRAATMSDLFDLGRLFVSHRLPKGD 308
Query: 303 NVVIITNGGGIGVMATDAAE--EEGLKLYDDLEQLKIFANHMPPFGSYKNPVDLTGMADA 360
N VI+TN GG G++ TDA E G+ D + + A +P S KNPVD+ G A
Sbjct: 309 NFVIVTNAGGPGIVTTDAFETYHVGMAALSD-KTKEALAKVLPGEASVKNPVDIVGDAPP 367
Query: 361 KSYEGAIRDALNHP--EMHSIIVLYCQTAVLDPRDLAEIIIREYNESGRKKPLVVAIVGG 418
K YE A+ P + ++L P ++AE+ R Y + + +V A +GG
Sbjct: 368 KRYEDALEICFKEPPETVAGAVILVTPQGQTKPCEVAELCTRMYAKY-PDRLVVSAFMGG 426
Query: 419 IEAKEAIDTLNENGIPAYPEPERAVKALSALYRWSKWK 456
+ +E LN +P +P PE A+ A A+ ++ K K
Sbjct: 427 LTMQEPSKILNNAKMPVFPFPEPAIHATGAVLKYRKIK 464
>gb|AAF88064.1|AF286346_1 (AF286346) acetyl-CoA synthetase [Entamoeba histolytica]
Length = 713
Score = 323 bits (819), Expect = 3e-87
Identities = 184/466 (39%), Positives = 272/466 (57%), Gaps = 19/466 (4%)
Query: 1 MSLEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKV 60
M E LFNPKS+ VIGAS + +GYA+M N+I+ GY+G +YPV G + E+ G+K
Sbjct: 1 MQFEPLFNPKSVPVIGASDRKESVGYAVMNNMIKGGYKGNLYPV---GRKPELFGKK--C 55
Query: 61 YKSILEVPDEVDMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQLV 120
Y I ++ ++VD+A+I +PAKFVP V ECG+ GVK + II++GF E GEEGKK+ ++
Sbjct: 56 YAKIGKIEEKVDLAVIAIPAKFVPGVCIECGEAGVKGLIIITAGFAEAGEEGKKMCIEIQ 115
Query: 121 ETARKYGMRILGPNIFGVVYTPAKLNGTFGPTDVLPGPLALISQSGALGIALMGWTILEK 180
T +KY MR++GPN G++ +N +F G +A ISQSGAL A++ W +
Sbjct: 116 ATCQKYNMRMIGPNCLGIINPRDGVNASFASVMPEAGGVAFISQSGALCTAILDWAANQH 175
Query: 181 IGLSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKKKPII 240
+G S VS+G+ D D ADL EFF D +IL+Y+E +KD ++F+ A+E + KPII
Sbjct: 176 VGFSYFVSIGSSIDTDYADLFEFFAKDPKVTSILMYIESIKDAKKFVLRAREFAADKPII 235
Query: 241 VIKAGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALSNLPEPQ 300
++KAG+S GA AA SHTGSLAG+D +Y A F + G +R +I + +D A L+ PQ
Sbjct: 236 LLKAGKSSEGAAAAMSHTGSLAGNDAVYDAVFDRCGCIRVDSICDLWDCAHVLATQNIPQ 295
Query: 301 GDNVVIITNGGGIGVMATD---AAEEEGLKLYDD-LEQLKIFANHMPPFGSYKNPVDLTG 356
+ + IITN GG GV++TD + KL + + +L F + PF S+ NPVD+ G
Sbjct: 296 NNRLCIITNAGGPGVISTDRLVSVHGHLAKLSESTMNELNAF---LSPFWSHSNPVDVLG 352
Query: 357 MADAKSYEGAIRDALNHPEMHSIIVLYCQTAVLDPRDLAEIIIREYNESGRKKPLVVAIV 416
A A Y+ + + P++ ++V+ A+ DP +A+ ++ + P
Sbjct: 353 DATAGVYQKTLDIVIKDPQIDGVVVVLTPQAMTDPVAVAKSLVEHGPYQNQSLP-----H 407
Query: 417 GGIEAKE--AIDTLNENGIPAYPEPERAVKALSALYRWSKWKAKHK 460
G + K + L E IP + PERAV A + R AK K
Sbjct: 408 GWVNQKSEAGVKILEEGKIPNFETPERAVTAFGYIMRHPDIAAKLK 453
>gi|11499106 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483131|pir||F69438 conserved hypothetical protein
AF1511 - Archaeoglobus fulgidus
>gi|2649053|gb|AAB89736.1| (AE000998) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 881
Score = 317 bits (804), Expect = 2e-85
Identities = 178/463 (38%), Positives = 274/463 (58%), Gaps = 12/463 (2%)
Query: 2 SLEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKVY 61
+L+ FNP+S+AVIGAS K+G NL+ Y + G YPVN I G + Y
Sbjct: 190 ALKHFFNPESVAVIGASRDVEKVGGRTFYNLLTYRFNGVAYPVN--RAAKAIMG--VRAY 245
Query: 62 KSILEVPDEVDMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQLVE 121
+I EVPDEV++A++ VP K+ +V EECG+KGVK + ++++GF E+G EG + +++LVE
Sbjct: 246 PTISEVPDEVELAVLSVPVKYALEVAEECGKKGVKALLVLTAGFAEVGGEGVERQKKLVE 305
Query: 122 TARKYGMRILGPNIFGVVYTP--AKLNGTFGPTDVLPGPLALISQSGALGIALMGWTILE 179
RKYGMR++GPN G++ T +L TF PT G +A SQSGA+G+ALM
Sbjct: 306 ICRKYGMRLIGPNCMGIINTAPETRLLATFAPTPPNEGSIAFASQSGAVGLALMDRVNNY 365
Query: 180 KIGLSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKKKPI 239
+GLS VS+GN ADI DL+EF+++D T+ I++Y E + + R+F +AK +SKKKPI
Sbjct: 366 GLGLSYFVSLGNSADITSNDLIEFWEEDGRTKLIMLYQESIPNPRKFARLAKRISKKKPI 425
Query: 240 IVIKAGRSERGAKAAASHTGSLAGSDTI-YSAAFKQSGVLRALTIGEAFDWARALSNLPE 298
+ I +G + GAKA ASHTG++ S I A FKQ+G++RA +I E F + L + P
Sbjct: 426 LAIASGVTPAGAKAVASHTGAIVSSSGIAIDALFKQTGIIRASSIDELFSISEFLLHQPL 485
Query: 299 PQGDNVVIITNGGGIGVMATDAAEEEGLKLYDDLEQL-KIFANHMPPFGSYKNPVDLTGM 357
P+G+ V I+TNGGG+G + +D + GL++ + E+ + N +P S KNPVD+T
Sbjct: 486 PKGNRVCIVTNGGGLGAITSDWCHQVGLEIAELSERTQESLRNLLPEIASVKNPVDMTAS 545
Query: 358 ADAKSYEGAIRDALNHPEMHSIIVLYCQTAVLDPRDLAE--IIIREYNESGRKKPLVVAI 415
AD + Y ++ + +II ++ + + E +I + KP+V
Sbjct: 546 ADVRMYGQTLKTVAEDENVDAIICIFVAAVSEEKSEEVEKAVISAAKYANSVGKPVVYIY 605
Query: 416 VGGIEAKEAIDTLNENGIPAYPEPERAVKALSALYRWSKWKAK 458
+ ++K+ + +E +P Y P A K L + ++KW+ K
Sbjct: 606 ISS-DSKDGV-IGDEVKVPVYVFPNTAAKVLGKVVEYAKWREK 646
>gb|AAK42002.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 660
Score = 308 bits (780), Expect = 1e-82
Identities = 173/445 (38%), Positives = 267/445 (59%), Gaps = 19/445 (4%)
Query: 3 LEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKVYK 62
L LF P+SIAV+GAS K+G I +NL+ ++GK+YP+N K ++E K YK
Sbjct: 4 LNYLFKPRSIAVVGASRHKEKVGNVIFRNLLST-FQGKLYPINTKAEDVE----GVKAYK 58
Query: 63 SILEVPDEVDMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQLVET 122
S+ E+PD++D+ +I VP + VPQ +EE +KGVK +I++GF E+GEE K+E +++
Sbjct: 59 SVKEIPDDIDLGVIAVPREVVPQTMEEFVEKGVKASIVITAGFREVGEE--KLENEVISI 116
Query: 123 ARKYGMRILGPNIFGVVYTPAKLNGTFGPTDVLPGPLALISQSGALGIALMGWTILEKIG 182
ARK G+R+LGPN FG++ TP + N TF TDV G + L+ QSG LG+ ++ W +IG
Sbjct: 117 ARKGGIRVLGPNTFGII-TP-EFNATFTYTDVKRGNVGLVVQSGGLGVYMLNWAQKYRIG 174
Query: 183 LSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKKKPIIVI 242
+S +VS+GN+AD+ + +++ + D TRAI +Y+EGV DG F+E E +++KP++ +
Sbjct: 175 ISYMVSLGNQADVKEYEVINYLSKDAETRAIFVYLEGVSDGNAFLEELPEATRRKPVVFL 234
Query: 243 KAGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALSNLPEPQGD 302
K G S GA AA +HTGSLAGS ++ AA G + + + + A+ L EP +
Sbjct: 235 KGGVSSSGASAAKTHTGSLAGSFEVFKAAVNTIGGILVDNLHDMLNLAKILM-YSEPISE 293
Query: 303 NVVIITNGGGIGVMATDAAEEEGLKLYDDLEQL-KIFANHMPPFGSYKNPVDLTGMADAK 361
+++ITN GG GV+ +D ++ GL+L + E + K +PP KNP+DLTG AD +
Sbjct: 294 ELLVITNSGGHGVLVSDEIDKNGLRLVEIPEWMKKELTKILPPTSLPKNPLDLTGDADRE 353
Query: 362 SYEGAIRDALNHPEMHSIIVLYCQTAVLDPRDLAEIIIREYNESGRKKPLVVAIVGGIEA 421
Y A++ + +IV ++ D+A +I S K V+ + G++
Sbjct: 354 RYHNALKIVSSLDCTKLVIVQ--SLPMVSCSDVARVI------SNFKGKGVIGVTMGLDE 405
Query: 422 KEAIDTLNENGIPAYPEPERAVKAL 446
A+ L GIP Y PE AVKA+
Sbjct: 406 DMALKILETTGIPGYTFPEDAVKAI 430
>gi|11499522 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483184|pir||A69492 conserved hypothetical protein
AF1938 - Archaeoglobus fulgidus
>gi|2648606|gb|AAB89317.1| (AE000970) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 673
Score = 286 bits (725), Expect = 3e-76
Identities = 178/462 (38%), Positives = 267/462 (57%), Gaps = 21/462 (4%)
Query: 3 LEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKVYK 62
L LF PKS+AVIGAS GK G+ I+ NL + G+ GKIYPVN ++ + K Y
Sbjct: 218 LRDLFYPKSVAVIGASRTVGKPGFNIVWNLKQNGFMGKIYPVNPNADKI----LELKCYP 273
Query: 63 SILEVPDEVDMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQLVET 122
SIL++PDEVDMAII VPAK VP+V+ EC QKG+K I+SSGF E GE+G + E++++E
Sbjct: 274 SILDIPDEVDMAIIAVPAKIVPEVMAECAQKGIKGAVIVSSGFSEEGEKGAEYERRVLEI 333
Query: 123 ARKYGMRILGPNIFGVVYTPAKLNGTFGPTDVL-PGPLALISQSGA-LGIAL-MGWTILE 179
A+K+G+RI GPN GV+ T +F V+ G + +I+Q+G LGI + + +
Sbjct: 334 AKKHGIRIFGPNTTGVLNTENGFITSFAIQPVIKKGNIGIIAQTGLFLGIMMDIVTSNHP 393
Query: 180 KIGLSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKKKPI 239
IG S +V +GNK D++D ++L+F DE T+ I IYMEG+K+GR F +VA S +KPI
Sbjct: 394 SIGFSKIVGMGNKIDVEDYEVLDFLLKDEQTKVIGIYMEGIKNGRAFYDVAS--SAEKPI 451
Query: 240 IVIKAGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALSNLPEP 299
+V K+GR+E G KAA SHT S+ G D ++ A +Q+ ++R + E FD +A S P P
Sbjct: 452 VVFKSGRTEYGQKAAMSHTASICGDDDVFDAVCRQANLVRVYSFDELFDVTKAFSLQPLP 511
Query: 300 QGDNVVIITNGGGIGVMATDAAEEEGLKLYD-DLEQLKIFANHMPPFGSYKNPVDLTGMA 358
+GD V II G V +DAA GLKL + + + + P + + NP+D+ M
Sbjct: 512 KGDRVAIIHYTGSGCVQGSDAAYFAGLKLAEFSKDTVDKISEVTPEWHNVNNPIDIWPMV 571
Query: 359 D----AKSYEGAIRDALNHPEMHSIIVLYCQTAVLDPRDLAEI-IIREYNESGRKKPLVV 413
+ K+Y+ AI + + S+I +++ + +++Y KP+
Sbjct: 572 EYYGAFKAYQTAIEAVMEDEGVDSVIACVWANRLINADFEPDYKSLKKYG-----KPIYF 626
Query: 414 AIVGGIEAK-EAIDTLNENGIPAYPEPERAVKALSALYRWSK 454
+ G + + + L NGIP Y AV L + +++K
Sbjct: 627 CVEGARDVVFDHKNALELNGIPVYTNVINAVNVLGKVTKYAK 668
>gi|11498792 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483097|pir||G69398 conserved hypothetical protein
AF1192 - Archaeoglobus fulgidus
>gi|2649402|gb|AAB90053.1| (AE001022) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 664
Score = 273 bits (691), Expect = 3e-72
Identities = 171/458 (37%), Positives = 260/458 (56%), Gaps = 22/458 (4%)
Query: 7 FNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKVYKSILE 66
F KS+AVIGAS K G ++ NL G+ GK+YPVN GE+ +K Y S+
Sbjct: 222 FKAKSVAVIGASRNLLKPGGRVLSNLKHLGFRGKVYPVNPNAGEI----LGYKCYPSVRA 277
Query: 67 VPDEVDMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQLVETARKY 126
+PD+VD+A+I VP+K +VV+EC +KGVK + ++S+GF E E+GK++E+Q+VE ARK
Sbjct: 278 IPDKVDLAVIAVPSKNAIEVVKECAEKGVKGIIVLSAGFAEGWEQGKELERQIVEIARKS 337
Query: 127 GMRILGPNIFGVVYTPAKLNGTFGP-TDVLPGPLALISQSGALG--IALMGWTILEKIGL 183
GMRI+GPN G++ + L F + G + +++QSGA+ I L W +G
Sbjct: 338 GMRIVGPNTMGILDPESGLTSFFSVLRKIGQGNIGVLAQSGAVANFILLPLW----HVGF 393
Query: 184 SAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKKKPIIVIK 243
S +V++GNKAD+ + ++L F DE TR + Y+EG +GR+F E+ K + KPI+V+K
Sbjct: 394 SKIVAIGNKADVGEVEVLNFLLKDEKTRVVAAYLEGFTNGRKFYELMK--ASTKPIVVLK 451
Query: 244 AGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALSNLPEPQGDN 303
+GR+E G ++A SHT S++ S+ I+ AA KQ+GV + E D A+AL+ P P+G
Sbjct: 452 SGRTEAGKRSALSHTASISTSEEIFEAACKQAGVAKVYDFEELVDAAKALALQPLPRGTR 511
Query: 304 VVIITNGGGIGVMATDAAEEEGLKLYDDLEQ-LKIFANHMPPFGSYKNPVDLTGMADAKS 362
V +I G VM+ DA E GL+L E+ L+ P + S NP+DL +A+
Sbjct: 512 VGVIQPSGAECVMSADAVVENGLELAKYSEKTLERLYELAPEWHSINNPLDLYPIAEKSG 571
Query: 363 YE--GAIRDALNHPEMHSIIVLYCQTAVLDPRDLAEIIIREYNESGRKKPLVVAIVGGI- 419
E + N E IV V P + + + KP++ + I
Sbjct: 572 DEVFNEVLKVFNEDENIDAIV----AGVFIPSIMKLGVDFSWTRK-FSKPVLFTMKDDIE 626
Query: 420 EAKEAIDTLNENGIPAYPEPERAVKALSALYRWSKWKA 457
E ++A + +G+P YP PERAV+AL + +K K+
Sbjct: 627 ELRQARIEIERSGVPVYPTPERAVRALRHMVTVAKRKS 664
>pir||C82443 conserved hypothetical protein VCA0574 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9657984|gb|AAF96476.1|
(AE004388) conserved hypothetical protein [Vibrio
cholerae]
Length = 893
Score = 269 bits (680), Expect = 5e-71
Identities = 158/455 (34%), Positives = 249/455 (54%), Gaps = 7/455 (1%)
Query: 3 LEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKVYK 62
L L PKS+AVIGAS + + G +MKNL++ G++G I PV + G YK
Sbjct: 4 LNQLLRPKSVAVIGASVRSFRAGNIVMKNLLQGGFDGAIMPVTPY--YPAVCG--VLAYK 59
Query: 63 SILEVPDEVDMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQLVET 122
+I ++P D+AI+ A + ++ +KGVK V ++SS L +G++++ Q +
Sbjct: 60 TISDLPIVPDIAILCTHASRNVSLFKQLAEKGVKQVIVLSSDMYSLDAQGEEIQAQCMTI 119
Query: 123 ARKYGMRILGPNIFGVVYTPAKLNGTFGPTDVLPGPLALISQSGALGIALMGWTILEKIG 182
A+ MRILGPN G++ + NG+F P L G +A +SQS A+ ++ W + IG
Sbjct: 120 AKSVNMRILGPNSLGLILPWMQFNGSFSPVSALKGNIAFVSQSAAVCTTILDWANDKGIG 179
Query: 183 LSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKKKPIIVI 242
SA +S+GN +DID ADLL+ D++T AIL+Y++ ++D RRFM A+ S+ + I+V+
Sbjct: 180 FSAFISLGNASDIDFADLLDTLSTDKHTDAILLYVDTIRDARRFMSAARAASRNRRILVL 239
Query: 243 KAGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALSNLPEPQGD 302
K GR++ G KAA HTG D IY +A +++G+LR E F L++ +G+
Sbjct: 240 KGGRTKAGRKAAQMHTGGDDTLDIIYDSAIRRTGMLRVNNTHELFAAVETLTHSVPLRGE 299
Query: 303 NVVIITNGGGIGVMATDAAEEEGLKLYDDLEQLKIFANH-MPPFGSYKNPVDLTGMADAK 361
+ IITNGGG +MA DA E G KL +++ N +P S+ NPVD+ G AD
Sbjct: 300 RLAIITNGGGPAIMAVDALLERGGKLAQLEDEIYEKLNQSLPQSWSHSNPVDIVGDADHL 359
Query: 362 SYEGAIRDALNHPEMHSIIVLYCQTAVLDPRDLAEIIIREYNESGRKK--PLVVAIVGGI 419
Y + L + +I++++ +A+ A+ ++ + R K ++ G +
Sbjct: 360 RYVSTLNILLESENIDAILIMHSPSAIAHSEQTAQALVEAVQKHPRAKRFNILTNWSGEL 419
Query: 420 EAKEAIDTLNENGIPAYPEPERAVKALSALYRWSK 454
AK A N+ GIP Y PE AV A L + +
Sbjct: 420 SAKPARTLFNQAGIPTYRTPESAVTAFMHLVEYRR 454
>gi|11498537 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7483066|pir||D69366 conserved hypothetical protein
AF0932 - Archaeoglobus fulgidus
>gi|2649664|gb|AAB90306.1| (AE001039) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 666
Score = 230 bits (580), Expect = 3e-59
Identities = 136/353 (38%), Positives = 208/353 (58%), Gaps = 13/353 (3%)
Query: 7 FNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKVYKSILE 66
F +S+AVIGAS+ P K+G +++++L+ +IYP+N E+ K Y S+
Sbjct: 223 FKARSVAVIGASTNPIKVGNSVVRSLMS-NKNLRIYPINPNASEI----LGLKAYPSVKS 277
Query: 67 VPDEVDMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGFGELG-EEGKKVEQQLVETARK 125
+P+ D+AI+ VPA+FV V E + GVK V IISSGF E EEGK E++L E ARK
Sbjct: 278 LPEVPDIAIVTVPAEFVLDAVREAAEAGVKGVVIISSGFKEAEVEEGKVREERLREIARK 337
Query: 126 YGMRILGPNIFGVVYTPAKLNGTFGP--TDVLPGPLALISQSGALGIALMGWTILEKIGL 183
YG+RI+GPN FG+V +N +F P ++V G +AL+SQSG GI G
Sbjct: 338 YGIRIVGPNTFGIVSVVGGINASFTPMFSEVKKGRIALVSQSG--GICHYIIHKFRDSGF 395
Query: 184 SAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKKKPIIVIK 243
S ++ +GN+ D+D D++ F ++DENT + +Y+EG+ +GR E K + +K ++V+K
Sbjct: 396 SHILHLGNRCDVDFPDVMRFLREDENTDVVAVYVEGIDNGRGLFEELKRLCSEKKVVVMK 455
Query: 244 AGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALSNLPEPQGDN 303
+GRS KA+ SHTGS+AG ++++A KQ+G + T E D A A+ G
Sbjct: 456 SGRSSVADKASVSHTGSMAGDYRVFASAMKQAGAVVVETPTELIDTAIAMEKFEVSGG-- 513
Query: 304 VVIITNGGGIGVMATDAAEEEGLKLYD-DLEQLKIFANHMPPFGSYKNPVDLT 355
V ++T G+G++A D E G +L E ++ + +PP +NPVDL+
Sbjct: 514 VAVLTIQAGLGIVAADIIESSGGRLARFGEETVRKLKSLLPPITLRENPVDLS 566
>gb|AAG19369.1| (AE005031) acetyl-CoA synthetase; Acs3 [Halobacterium sp. NRC-1]
Length = 542
Score = 222 bits (559), Expect = 8e-57
Identities = 119/290 (41%), Positives = 179/290 (61%), Gaps = 5/290 (1%)
Query: 162 ISQSGALGIALMGWTILEKIGLSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVK 221
+SQSGA A++ W + IG + S+GNKA + + D ++ + DD +T IL Y+EGV
Sbjct: 1 MSQSGAFITAVLDWANDQGIGFKDIASLGNKAVLSETDFMQAWADDPDTNVILGYLEGVD 60
Query: 222 DGRRFMEVAKEVSKKKPIIVIKAGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRAL 281
DGR F++ A+EV++ P +V+K+GR+E GA+AA+SHTG++AGS+ Y A FKQ+GV+RA
Sbjct: 61 DGREFIDDAREVTQDTPAVVVKSGRTEAGAQAASSHTGTIAGSEAAYEAGFKQAGVVRAE 120
Query: 282 TIGEAFDWARALSNLPEPQGDNVVIITNGGGIGVMATDAAEEEGLKL--YDDLEQLKIFA 339
+ E FD+ARAL LP P ++V +ITN GG GVMATDA + L + ++D + +
Sbjct: 121 NVQELFDFARALDGLPMPDSEDVAVITNAGGPGVMATDAVGDSRLSMASFED-DTIDALQ 179
Query: 340 NHMPPFGSYKNPVDLTGMADAKSYEGAIRDALNHPEMHSIIVLYCQTAVLDPRDLAEIII 399
MP + NPVD+ G A+ + AI L + +VL TAV+D +L+ +I
Sbjct: 180 GSMPDEANVYNPVDVIGDAEIDRFRTAIDTVLADEHVGCALVLSAPTAVIDYTELSGVIT 239
Query: 400 REYNESGRKKPLVVAIVGGIEAKEAIDTLNENGIPAYPEPERAVKALSAL 449
+ KP+V ++GG ++A D L + GIP Y +P RA+ +L AL
Sbjct: 240 A--LQEKHNKPVVTCLMGGERTEQATDVLGDAGIPNYFDPARAIGSLDAL 287
>dbj|BAA10925.1| (D64044) hypothetycal 67KD protein fragment in UNG 3' region
[Escherichia coli]
Length = 612
Score = 221 bits (558), Expect = 1e-56
Identities = 143/455 (31%), Positives = 230/455 (50%), Gaps = 19/455 (4%)
Query: 3 LEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKVYK 62
LEAL PKSIAVIGAS KP + GY +M+NL+ G+ G + PV + G +
Sbjct: 6 LEALLRPKSIAVIGASMKPNRAGYLMMRNLLAGGFNGPVLPVT--PAWKAVLG--VLAWP 61
Query: 63 SILEVPDEVDMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQLVET 122
I +P D+A++ A ++EE G+KG K I+S+ + + L
Sbjct: 62 DIASLPFTPDLAVLCTNASRNLALLEELGEKGCKTCIILSAPASQ--------HEDLRAC 113
Query: 123 ARKYGMRILGPNIFGVVYTPAKLNGTFGPTDVLPGPLALISQSGALGIALMGWTILEKIG 182
A ++ MR+LGPN G++ LN +F P + G LA ISQS A+ ++ W K+G
Sbjct: 114 ALRHNMRLLGPNSLGLLAPWQGLNASFSPVPIKRGKLAFISQSAAVSNTILDWAQQRKMG 173
Query: 183 LSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKKKPIIVI 242
S +++G+ DID +LL++ D T AIL+Y+E + D RRF+ A+ S+ KPI+VI
Sbjct: 174 FSYFIALGDSLDIDVDELLDYLARDSKTSAILLYLEQLSDARRFVSAARSASRNKPILVI 233
Query: 243 KAGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALSNLPEPQGD 302
K+GRS AA + AG D + AA +++G+LR E F LS++ +GD
Sbjct: 234 KSGRS----PAAQRLLNTTAGMDPAWDAAIQRAGLLRVQDTHELFSAVETLSHMRPLRGD 289
Query: 303 NVVIITNGGGIGVMATDAAEEEGLKLYD-DLEQLKIFANHMPPFGSYKNPVDLTGMADAK 361
++II+NG +A DA KL E + + +P + NP+DL A ++
Sbjct: 290 RLMIISNGAAPAALALDALWSRNGKLATLSEETCQKLRDALPEHVAISNPLDLRDDASSE 349
Query: 362 SYEGAIRDALNHPEMHSIIVLYCQTAVLDPRDLAEIIIREYNESGRKK--PLVVAIVGGI 419
Y + L+ + +++V++ +A + A+++I R K L+ G
Sbjct: 350 HYIKTLDILLHSQDFDALMVIHSPSAAAPATESAQVLIEAVKHHPRSKYVSLLTNWCGEH 409
Query: 420 EAKEAIDTLNENGIPAYPEPERAVKALSALYRWSK 454
++EA +E G+P Y PE + A + + +
Sbjct: 410 SSQEARRLFSEAGLPTYRTPEGTITAFMHMVEYRR 444
>sp|P76594|YFIQ_ECOLI HYPOTHETICAL 98.0 KD PROTEIN IN UNG-PSSA INTERGENIC REGION
>gi|7466397|pir||G65036 hypothetical protein b2584 -
Escherichia coli (strain K-12)
>gi|1788938|gb|AAC75637.1| (AE000344) orf, hypothetical
protein [Escherichia coli K12]
Length = 886
Score = 221 bits (558), Expect = 1e-56
Identities = 143/455 (31%), Positives = 230/455 (50%), Gaps = 19/455 (4%)
Query: 3 LEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKVYK 62
LEAL PKSIAVIGAS KP + GY +M+NL+ G+ G + PV + G +
Sbjct: 6 LEALLRPKSIAVIGASMKPNRAGYLMMRNLLAGGFNGPVLPVT--PAWKAVLG--VLAWP 61
Query: 63 SILEVPDEVDMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQLVET 122
I +P D+A++ A ++EE G+KG K I+S+ + + L
Sbjct: 62 DIASLPFTPDLAVLCTNASRNLALLEELGEKGCKTCIILSAPASQ--------HEDLRAC 113
Query: 123 ARKYGMRILGPNIFGVVYTPAKLNGTFGPTDVLPGPLALISQSGALGIALMGWTILEKIG 182
A ++ MR+LGPN G++ LN +F P + G LA ISQS A+ ++ W K+G
Sbjct: 114 ALRHNMRLLGPNSLGLLAPWQGLNASFSPVPIKRGKLAFISQSAAVSNTILDWAQQRKMG 173
Query: 183 LSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKKKPIIVI 242
S +++G+ DID +LL++ D T AIL+Y+E + D RRF+ A+ S+ KPI+VI
Sbjct: 174 FSYFIALGDSLDIDVDELLDYLARDSKTSAILLYLEQLSDARRFVSAARSASRNKPILVI 233
Query: 243 KAGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALSNLPEPQGD 302
K+GRS AA + AG D + AA +++G+LR E F LS++ +GD
Sbjct: 234 KSGRS----PAAQRLLNTTAGMDPAWDAAIQRAGLLRVQDTHELFSAVETLSHMRPLRGD 289
Query: 303 NVVIITNGGGIGVMATDAAEEEGLKLYD-DLEQLKIFANHMPPFGSYKNPVDLTGMADAK 361
++II+NG +A DA KL E + + +P + NP+DL A ++
Sbjct: 290 RLMIISNGAAPAALALDALWSRNGKLATLSEETCQKLRDALPEHVAISNPLDLRDDASSE 349
Query: 362 SYEGAIRDALNHPEMHSIIVLYCQTAVLDPRDLAEIIIREYNESGRKK--PLVVAIVGGI 419
Y + L+ + +++V++ +A + A+++I R K L+ G
Sbjct: 350 HYIKTLDILLHSQDFDALMVIHSPSAAAPATESAQVLIEAVKHHPRSKYVSLLTNWCGEH 409
Query: 420 EAKEAIDTLNENGIPAYPEPERAVKALSALYRWSK 454
++EA +E G+P Y PE + A + + +
Sbjct: 410 SSQEARRLFSEAGLPTYRTPEGTITAFMHMVEYRR 444
>pir||B83518 pimeloyl-CoA synthetase PA1017 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9946928|gb|AAG04406.1|AE004534_4
(AE004534) pimeloyl-CoA synthetase [Pseudomonas
aeruginosa]
Length = 715
Score = 216 bits (544), Expect = 5e-55
Identities = 149/461 (32%), Positives = 231/461 (49%), Gaps = 21/461 (4%)
Query: 2 SLEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKVY 61
SL L P+S+AVIGASS P +IG + ++ +GY G+I PVN E++ +
Sbjct: 17 SLTPLIEPRSVAVIGASSDPTRIGGRPIAYMLRHGYAGQILPVNPNRAEIQ----GLPAF 72
Query: 62 KSILEVPDEVDMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQLVE 121
S+ E+P D+AI+ VPA V + V G++G + + SSGF E+GE G ++ +V
Sbjct: 73 ASVAELPQAPDVAIVAVPAPQVLETVRALGRQGARSAIVFSSGFSEVGEAGAAMQDAVVA 132
Query: 122 TARKYGMRILGPNIFGVVYTPAKLNGTFGPT----DVLPGPLALISQSGALGIALMGWTI 177
AR++GMR+LGPN G + F + LPG + + +QSGA G L+G
Sbjct: 133 AAREHGMRLLGPNALGAFNSNLGYYAFFSTSLERGVPLPGRVGIATQSGAYGAHLLGMAR 192
Query: 178 LEKIGLSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKK- 236
++G V+ GN+AD+ D + + + ++ Y E +++ F+ + +
Sbjct: 193 QRRLGTPICVATGNEADVTLGDSIGWLVESPEIDVVMAYAESIRNVDSFLAALEAAHRAG 252
Query: 237 KPIIVIKAGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALSNL 296
KP+I+ K GRS G++AA SHT SLAG D + A V+RA T E D A +
Sbjct: 253 KPVILHKVGRSALGSRAALSHTASLAGDDKVLDAVLGDYAVIRARTTEELMDIAYLATRR 312
Query: 297 PEPQGDNVVIITNGGGIGVMATDAAEEEGLKL--YDDLEQLKIFANHMPPFGSYKNPVDL 354
P G+++ +IT GG G++ +D AEE GL + D+ Q ++ A F S NPVD
Sbjct: 313 IYPVGNSLGMITVSGGAGIIVSDVAEEVGLPMPPMPDMAQERLKAR--LSFASPINPVDC 370
Query: 355 TGMA--DAKSYEGAIRDALNHPEMHSIIVLYCQ--TAVLDPRDLAEIIIREYNESGRKKP 410
T A D + S++ + Q TA LAE R E+ ++
Sbjct: 371 TAQALNDLTLVRDFTESMVVDGGYRSLLAFFTQAGTAASIGARLAE-QFRRIKEAHPERL 429
Query: 411 LVVAIVGGIEAKEAIDTLNENGIPAYPEPERAVKALSALYR 451
VV+++G E + E G + +P RAV A+ A+ R
Sbjct: 430 FVVSVMG---EGEELAPYEEAGFALFEDPTRAVVAIQAMGR 467
>pir||T35878 hypothetical protein SC9B10.09 - Streptomyces coelicolor
>gi|2661695|emb|CAA15799.1| (AL009204) hypothetical
protein SC9B10.09 [Streptomyces coelicolor A3(2)]
Length = 1039
Score = 215 bits (542), Expect = 8e-55
Identities = 130/391 (33%), Positives = 208/391 (52%), Gaps = 35/391 (8%)
Query: 2 SLEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGE--MEISGRKFK 59
S++ L P S+AV+GA PG +G +I+ N+ + GY G++Y VN E E+ G
Sbjct: 205 SVQRLLQPGSVAVVGAGRTPGGVGRSILGNIRDAGYTGRLYAVNRAFPEDMKELDG--VP 262
Query: 60 VYKSILEVPDEVDMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQL 119
+S+ ++ VD+A++ VPA+ VP VV CG+ GV+ + +IS+G+ + G EG++ ++ L
Sbjct: 263 ACRSVGDIDGPVDLAVVTVPAEHVPDVVTACGEHGVQGLVVISAGYADSGPEGRERQRAL 322
Query: 120 VETARKYGMRILGPNIFGVVYT--PAKLNGTFGPTDVLPGPLALISQSGALGIALM---- 173
V AR YGMRI+GPN FG++ T +LN + P G + L +QSGA+GIAL+
Sbjct: 323 VRHARTYGMRIIGPNAFGIINTSPDVRLNASLAPEMPRAGRIGLFAQSGAIGIALLSRLH 382
Query: 174 --GWTILEKIGLSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAK 231
G + G+S VS GN+AD+ D+L+++ DD T L+Y+E + + R+F +A+
Sbjct: 383 RRGGGVTGVTGVSTFVSSGNRADVSGNDVLQYWYDDPQTDVALMYLESIGNPRKFTRLAR 442
Query: 232 EVSKKKPIIVIKAGRSERGAKAAASH-TGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWA 290
+ KP++V++ R G A H + SA +Q+GV+R TI + D
Sbjct: 443 RTAAAKPLVVVQGAR--HGGVAPQGHAVRATRLPHATVSALLRQAGVIRVDTITDLVDAG 500
Query: 291 RALSNLPEPQGDNVVIITNGGGIGVMATDAAEEEGLKLYDDLEQLKIFANHMPPFGSYKN 350
L+ P P G V I+ N +G++ DA EGL+ +
Sbjct: 501 LLLARQPLPAGPRVAILGNSESLGLLTYDACLSEGLR--------------------PQP 540
Query: 351 PVDLTGMADAKSYEGAIRDALNHPEMHSIIV 381
P+DLT A A + A+ AL +++V
Sbjct: 541 PLDLTTAASADDFHAALARALADDTCDAVVV 571
>emb|CAA10043.1| (AJ012480) pimeloyl-CoA synthetase [Pseudomonas mendocina]
Length = 711
Score = 209 bits (526), Expect = 6e-53
Identities = 148/458 (32%), Positives = 225/458 (48%), Gaps = 19/458 (4%)
Query: 2 SLEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKVY 61
SL L P+S+AV+GASS P +IG + ++ G+ G+I PVN EI G Y
Sbjct: 13 SLTPLIQPRSVAVVGASSDPHRIGGRPIAYMLRNGFTGRILPVN--PNRTEIQG--LPAY 68
Query: 62 KSILEVPDEVDMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQLVE 121
S+ +P+ D+AII VPA V + V+ G+KG + + SSGF E+GEEG ++ +VE
Sbjct: 69 ASVDALPEAPDVAIIAVPAPQVLETVQVLGRKGARSAIVFSSGFSEVGEEGVAMQDAIVE 128
Query: 122 TARKYGMRILGPNIFGVVYTPAKLNGTFGPT----DVLPGPLALISQSGALGIALMGWTI 177
AR MR+LGPN GV F + L G + + +QSGA G L+G +
Sbjct: 129 AARAANMRLLGPNALGVFNANLGYYAFFSTSLERGIPLAGRVGIATQSGAYGAHLLGLSR 188
Query: 178 LEKIGLSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVAKEVSKK- 236
+G V+ GN+AD+ D + + + ++ Y E +++ F+ + +
Sbjct: 189 QRGLGTPICVATGNEADVTLGDAIGWLVESPEVDVVMAYAESIRNVDSFLAALEAAHRAG 248
Query: 237 KPIIVIKAGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALSNL 296
KP+I+ K GRSE G +AA SHT SLAG D + A V+RA T E D A +
Sbjct: 249 KPVILHKVGRSELGGRAAMSHTASLAGDDKVLDAVLADYAVVRARTTEELVDIAYLATQR 308
Query: 297 PEPQGDNVVIITNGGGIGVMATDAAEEEGLKLYDDLEQLKIFANHMPPFGSYKNPVDLTG 356
P +++ +IT GG G++ +DAAE+ GL + E+ + + S NPVD T
Sbjct: 309 IIPVNNSLGMITVSGGAGIIVSDAAEDVGLPMPPMPEEAQARLKQRLHYASPLNPVDCTA 368
Query: 357 MA--DAKSYEGAIRDALNHPEMHSIIVLYCQ---TAVLDPRDLAEIIIREYNESGRKKPL 411
A D + S+I + Q A + PR LAE R +
Sbjct: 369 QALNDLSLVHDFTESMVVDGGYRSLIAFFTQAGTAASIGPR-LAEQFAR-IKADHPDRLF 426
Query: 412 VVAIVGGIEAKEAIDTLNENGIPAYPEPERAVKALSAL 449
VV+++G E + + G + +P RAV+A+ A+
Sbjct: 427 VVSVMG---EGEELAPYQKAGFALFEDPTRAVRAIQAM 461
>pir||H83024 hypothetical protein PA4978 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9951261|gb|AAG08363.1|AE004910_10
(AE004910) hypothetical protein [Pseudomonas aeruginosa]
Length = 696
Score = 141 bits (353), Expect = 1e-32
Identities = 126/466 (27%), Positives = 216/466 (46%), Gaps = 24/466 (5%)
Query: 2 SLEALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKVY 61
+L+ L P+ +A IG G+ +K E G+ G+++ VN + E+E
Sbjct: 5 NLKRLLAPRHLAFIG-----GRGMARALKRCAEGGFAGQLWLVNPQHAELE----GVPCV 55
Query: 62 KSILEVPDEVDMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQLVE 121
S+ ++P D A + + V KG +SGF E GE+G V+++L+
Sbjct: 56 ASVADLPCGPDAAFVATNRELTLDAVAALAAKGAGGAICYASGFAETGEQGLAVQRRLLA 115
Query: 122 TARKYGMRILGPNIFGVV---YTPAKLNGTFGPTDVLPGPLALISQSGALGIALMGWTIL 178
A + M +LGPN +G++ + A G V G +A+++QSG L
Sbjct: 116 AAGE--MALLGPNCYGLLDYLHGAALWPVAHGGRQVERG-VAVLTQSGNFAYNLSMSD-- 170
Query: 179 EKIGLSAVVSVGNKADIDDADLLEFFKDDENTRAILIYMEGVKDGRRFMEVA-KEVSKKK 237
+ ++ + SVGN+A + A+L++ D+ AI +++EG+K+ F A K + K
Sbjct: 171 RSLPVAYMASVGNQAQLGIAELMDVLLDEPRVTAIGLHLEGLKNVPGFARAAYKALQKGV 230
Query: 238 PIIVIKAGRSERGAKAAASHTGSLAGSDTIYSAAFKQSGVLRALTIGEAFDWARALSNLP 297
P+I +K G S+ GA A SHT SLAGSD +Y + F++ GV+R + +A +
Sbjct: 231 PVIALKTGVSKIGAALALSHTSSLAGSDALYDSLFERLGVIRVSGPVSFVETLKAAACGH 290
Query: 298 EPQGDNVVIITNGGGIGVMATDAAEEEGLKLYD-DLEQLKIFANHMPPFGSYKNPVDLTG 356
P G ++V + GG + D AE GL L D Q A +P + + NP+D T
Sbjct: 291 LPGGPSLVALACSGGDAGLIADYAERNGLGLPSFDAGQRDELAGVLPDYANIANPLDFTT 350
Query: 357 --MADAKSYEGAIRDALNHPEMHSIIVLYCQTAVLDPRDLAEIIIREYNESGRKKPLVVA 414
DA + E + AL P +++VL R +++++ Y + ++ V
Sbjct: 351 AIWGDAAALEEMLDSALRSPADAALLVLDYPGEETGERPQCDLLLQRYCAALKRHGKVGF 410
Query: 415 IVGG---IEAKEAIDTLNENGIPAYPEPERAVKALSALYRWSKWKA 457
I + A + L+ G+ A E + A + R+ + +A
Sbjct: 411 IASAFPELLPARARELLHGEGVAALQGVEDGLAAWGRIARYRQRRA 456
>pir||A72707 probable succinyl-CoA synthetase alpha chain APE1072 - Aeropyrum
pernix (strain K1) >gi|5104742|dbj|BAA80057.1|
(AP000060) 297aa long hypothetical succinyl-CoA
synthetase alpha chain [Aeropyrum pernix]
Length = 297
Score = 76.5 bits (185), Expect = 6e-13
Identities = 70/247 (28%), Positives = 113/247 (45%), Gaps = 18/247 (7%)
Query: 22 GKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKVYKSILEV---PDEVDMAIIVV 78
G+ G K ++EYG + KGG E+ G VY S+ E E++ +I+ V
Sbjct: 23 GREGSFHAKAMLEYGTKVVAGVTPGKGGS-EVHG--VPVYDSVKEALAEHPEINTSIVFV 79
Query: 79 PAKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQLVETARKYGMRILGPNIFGV 138
PA F P V E G+++V +I+ G + V AR+ G I+GPN G
Sbjct: 80 PAPFAPDAVYEAVDAGIRLVVVITEGI------PVHDTMRFVNYARQKGATIIGPNCPGA 133
Query: 139 VYTPAKLNGTFGPTDVL-PGPLALISQSGALGIALMGWTILEKIGLSAVVSVGNK--ADI 195
+ TP + P + G +A++S+SG L + + IG S V+ +G +
Sbjct: 134 I-TPGQAKVGIMPGHIFKEGGVAVVSRSGTLTYEISYMLTRQGIGQSTVIGIGGDPIVGL 192
Query: 196 DDADLLEFFKDDENTRAILIYME-GVKDGRRFMEVAKEVSKKKPIIVIKAGRSERGAKAA 254
+ L+ F++D T A+++ E G R E+ K+ KP+I AGR+ K
Sbjct: 193 SFTEALKLFQEDPQTEALVLIGEIGGDMEERAAEMIKKGEFTKPVIAYIAGRTAPPEK-R 251
Query: 255 ASHTGSL 261
H G++
Sbjct: 252 MGHAGAI 258
>gi|11499134 succinyl-CoA synthetase, alpha subunit (sucD-1) [Archaeoglobus
fulgidus] >gi|6647839|sp|O28733|SUD1_ARCFU SUCCINYL-COA
SYNTHETASE ALPHA CHAIN 1 (SCS-ALPHA 1)
>gi|7437884|pir||B69442 succinate--CoA ligase
(ADP-forming) (EC 6.2.1.5) alpha-1 chain - Archaeoglobus
fulgidus >gi|2649022|gb|AAB89707.1| (AE000996)
succinyl-CoA synthetase, alpha subunit (sucD-1)
[Archaeoglobus fulgidus]
Length = 291
Score = 72.2 bits (174), Expect = 1e-11
Identities = 73/265 (27%), Positives = 118/265 (43%), Gaps = 25/265 (9%)
Query: 30 KNLIEYGYE--GKIYPVNIKGGEMEISGRKFKVYKSILEVPDEV--DMAIIVVPAKFVPQ 85
K +++YG + G + P KGG E+ G VY ++ E E D +II VPA+F
Sbjct: 29 KRMLDYGTKVVGGVTPG--KGGS-EVHG--IPVYNTVEEAVAETNADTSIIYVPARFATD 83
Query: 86 VVEECGQKGVKVVPIISSGFGELGEEGKKVEQQLVETARKYGMRILGPNIFGVVYTPAKL 145
+ E G+++V ++ G E + R+ +LGPN GV+
Sbjct: 84 AIFEAFDAGLRLVVCVTEGIPLYDE------MLIHRKLREVKSMLLGPNCPGVISPGRSK 137
Query: 146 NGTFGPTDVLPGPLALISQSGALGIALMGWTILEKIGLSAVVSVGNKA--DIDDADLLEF 203
G G L ++S+SG L + IG S VV +G + D+L+
Sbjct: 138 VGLLPDRSFTQGNLGVVSRSGTLTYQICENLTKAGIGQSTVVGIGGDPMPGLTFVDVLKM 197
Query: 204 FKDDENTRAILIYME-GVKDGRRFMEVAKEVSKKKPIIVIKAGRSERGAKAAASHTGSL- 261
F++DE T+A+L+ E G + E K++S KP++ AGR+ K H G++
Sbjct: 198 FEEDEETKAVLLVGEIGGTAEEKAAEFIKQMS--KPVVAFIAGRTAPPGK-RMGHAGAII 254
Query: 262 ---AGSDTIYSAAFKQSGVLRALTI 283
G+ AA + +G A T+
Sbjct: 255 EGSTGTAEAKMAALRDAGARVAETL 279
>gi|11499767 succinyl-CoA synthetase, alpha subunit (sucD-2) [Archaeoglobus
fulgidus] >gi|6647837|sp|O28098|SUD2_ARCFU SUCCINYL-COA
SYNTHETASE ALPHA CHAIN 2 (SCS-ALPHA 2)
>gi|7437885|pir||A69523 succinate--CoA ligase
(ADP-forming) (EC 6.2.1.5) alpha-2 chain - Archaeoglobus
fulgidus >gi|2648340|gb|AAB89067.1| (AE000954)
succinyl-CoA synthetase, alpha subunit (sucD-2)
[Archaeoglobus fulgidus]
Length = 287
Score = 71.4 bits (172), Expect = 2e-11
Identities = 68/246 (27%), Positives = 112/246 (44%), Gaps = 33/246 (13%)
Query: 36 GYEGKIYPVNI--------------KGGEMEISGRKFKVYKSILEVPDEVDM--AIIVVP 79
GY+GK + + KGG E+ G VY S+ E E D ++I VP
Sbjct: 18 GYQGKFHTERMLNYGTKIVAGVTPGKGGT-EVLG--VPVYDSVKEAVREADANASVIFVP 74
Query: 80 AKFVPQVVEECGQKGVKVVPIISSGFGELGEEGKKVEQQLVETARKYGMRILGPNIFGVV 139
A F V E G+KV+ I+ G E ++ ++ G ++GPN G++
Sbjct: 75 APFAADAVMEAADAGIKVIVCITEGI------PVHDELKMYWRVKEAGATLIGPNCPGII 128
Query: 140 YTPAKLNGTFGPTDVL-PGPLALISQSGALGIALMGWTILEKIGLSAVVSVGNKADI--D 196
+P K + P + PG + ++S+SG L + +G S VV +G I D
Sbjct: 129 -SPGKTHLGIMPVQIFKPGNVGIVSRSGTLTYQIAYNLTKLGLGQSTVVGIGGDRIIGTD 187
Query: 197 DADLLEFFKDDENTRAILIYME-GVKDGRRFMEVAKEVSKKKPIIVIKAGRSERGAKAAA 255
++L F+DD+ T+A+++ E G +D E +E+S KP++ AG + K
Sbjct: 188 FVEVLRLFEDDKETKAVVLVGEIGGRDEEVAAEFIREMS--KPVVGYVAGLTAPPGK-RM 244
Query: 256 SHTGSL 261
H G++
Sbjct: 245 GHAGAI 250
>pir||F75091 hypothetical protein PAB1624 - Pyrococcus abyssi (strain Orsay)
>gi|5458547|emb|CAB50035.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 148
Score = 70.2 bits (169), Expect = 4e-11
Identities = 41/95 (43%), Positives = 59/95 (61%), Gaps = 6/95 (6%)
Query: 4 EALFNPKSIAVIGASSKPGKIGYAIMKNLIEYGYEGKIYPVNIKGGEMEISGRKFKVYKS 63
E L K IA++GAS KP + +MK L+E+GYE +YPVN K E+ GR K Y S
Sbjct: 17 EILLKYKKIALVGASPKPERDANRVMKYLLEHGYE--VYPVNPKYD--EVLGR--KCYPS 70
Query: 64 ILEVPDEVDMAIIVVPAKFVPQVVEECGQKGVKVV 98
+L++PD+V++ + V +F VE+ +KG KVV
Sbjct: 71 VLDIPDDVEVVDLFVRPEFTMDYVEQAIKKGAKVV 105
>pir||F81399 succinate--CoA ligase (ADP-forming) (EC 6.2.1.5) alpha chain Cj0534
[imported] - Campylobacter jejuni (strain NCTC 11168)
>gi|6968002|emb|CAB75170.1| (AL139075) succinyl-coA
synthetase alpha chain [Campylobacter jejuni]
Length = 289
Score = 70.2 bits (169), Expect = 4e-11
Identities = 71/246 (28%), Positives = 111/246 (44%), Gaps = 23/246 (9%)
Query: 42 YPVNIKGGEMEISGRKFKVYKSILE-VPDEV-----DMAIIVVPAKFVPQVVEECGQKGV 95
Y NI GG G + + K + + V D V D+++I VPA V V E G+
Sbjct: 31 YGTNIVGGITPHKGGQTHLGKPVFDTVADAVKATKADVSLIFVPAFAVGDSVIEAADAGI 90
Query: 96 KVVPIISSGFGELGEEGKKVEQQLV--ETARKYGMRILGPNIFGVVYTPAKLNGTFGPTD 153
K+ +I+ E V+ + + A K GM+I+GPN G++ + G
Sbjct: 91 KLAVVIT--------EHTPVKDMMFAKQYANKKGMKIIGPNCPGIITSEECKLGIMPGFI 142
Query: 154 VLPGPLALISQSGALGIALMGWTILEKIGLSAVVSVGNKADIDDA--DLLEFFKDDENTR 211
G + LIS+SG L + G+S V +G I A +LL F+ D+ T+
Sbjct: 143 FKKGCVGLISKSGTLTYEAANQVVQGGYGISTAVGIGGDPIIGLAYKELLSEFQKDDETK 202
Query: 212 AILIYMEGVKDGRRFMEVAKEVSK--KKPIIVIKAGRSERGAKAAASHTGSLAGSDTIYS 269
AI+ M G G +E AK + + KP++ AG + K H G++ GS +
Sbjct: 203 AIV--MIGEIGGSLEVEAAKFIKENISKPVVAFIAGATAPKGK-RMGHAGAIVGSADESA 259
Query: 270 AAFKQS 275
AA K++
Sbjct: 260 AAKKEA 265
>pir||T35774 succinyl-Coa synthetase alpha chain - Streptomyces coelicolor
>gi|3288607|emb|CAA19779.1| (AL031013) succinyl-coa
synthetase alpha chain [Streptomyces coelicolor A3(2)]
Length = 308
Score = 69.1 bits (166), Expect = 1e-10
Identities = 63/235 (26%), Positives = 101/235 (42%), Gaps = 19/235 (8%)
Query: 48 GGEMEISGRKFKVYKSILEVPDEV--DMAIIVVPAKFVPQVVEECGQKGVKVVPIISSGF 105
G ++ R V+ S+ E + D+ ++ VP F V E GV + +I+
Sbjct: 45 GRTVDFDNRTVPVFGSVREGIERTGADVTVVFVPPAFAEAAVVEAADAGVGLAVVIT--- 101
Query: 106 GELGEEGKKVEQQLVETA--RKYGMRILGPNIFGVVYTPAKLNGTFGPTDVL-PGPLALI 162
EG V + TA R G R++GPN G++ TP + N P D+ PG + L+
Sbjct: 102 -----EGIPVHDSVALTAHARAKGTRVIGPNCPGLI-TPGQSNAGIIPPDITKPGRIGLV 155
Query: 163 SQSGALGIALMGWTILEKIGLSAVVSVGNKADIDDA--DLLEFFKDDENTRAILIYMEGV 220
S+SG L LM L IG S V +G + + D L F+DD +T I++ E
Sbjct: 156 SKSGTLTYQLM--YELRDIGFSTCVGIGGDPVVGTSHIDCLAAFEDDPDTELIVLIGEIG 213
Query: 221 KDGRRFMEVAKEVSKKKPIIVIKAGRSERGAKAAASHTGSLAGSDTIYSAAFKQS 275
D KP++ AG + + H G++ + + A K++
Sbjct: 214 GDAEERAAAHIRAHVTKPVVAYIAGFTAPEGR-TMGHAGAIVSGSSGTARAKKEA 267
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.316 0.137 0.389
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172491567
Number of Sequences: 2977
Number of extensions: 7516015
Number of successful extensions: 24068
Number of sequences better than 1.0e-10: 36
Number of HSP's better than 0.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 23907
Number of HSP's gapped (non-prelim): 37
length of query: 460
length of database: 189,106,746
effective HSP length: 58
effective length of query: 402
effective length of database: 154,394,500
effective search space: 62066589000
effective search space used: 62066589000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 166 (69.1 bits)