BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1938 (PAB1938) DE:transcriptional regulatory protein, AsnC
family
(151 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75106 transcription regulatory protein, asnc family PAB193... 294 4e-79
pir||E71028 probable transcription regulator - Pyrococcus horiko... 273 5e-73
gb|AAK42498.1| Transcriptional regulatory protein, AsnC family (... 130 9e-30
pir||E75165 leucine-responsive-regulatory protein PAB0322 - Pyro... 120 8e-27
pir||E71176 probable transcription regulator - Pyrococcus horiko... 119 2e-26
gi|11498748 transcriptional regulatory protein, AsnC family [Arc... 116 1e-25
pir||B71235 probable transcription regulator - Pyrococcus horiko... 106 1e-22
sp|Q57615|Y151_METJA HYPOTHETICAL TRANSCRIPTIONAL REGULATOR PROT... 106 1e-22
gb|AAG19704.1| (AE005057) transcription regulator; AsnC [Halobac... 104 6e-22
pir||F75201 transcription regulatory protein PAB2257 - Pyrococcu... 103 8e-22
pir||B69026 transcription regulator - Methanobacterium thermoaut... 103 1e-21
sp|Q58133|Y723_METJA HYPOTHETICAL TRANSCRIPTIONAL REGULATOR PROT... 99 2e-20
emb|CAB61666.1| (AL133213) putative AsnC-family transcriptional ... 99 2e-20
sp|P44337|ASNC_HAEIN REGULATORY PROTEIN ASNC >gi|1075206|pir||G6... 99 2e-20
pir||T46972 transcription regulator lrpA [validated] - Pyrococcu... 97 8e-20
emb|CAB59580.1| (AL132662) putative transcriptional regulator [S... 97 1e-19
pir||E75176 transcription regulatory protein, asnc Family PAB039... 96 1e-19
emb|CAB57694.1| (Y18930) Lrp homolog (Leucine-responsive regulat... 95 3e-19
gb|AAK40917.1| Transcriptional regulator, putative [Sulfolobus s... 95 3e-19
pir||T45215 transcription regulator lrp [validated] - Sulfolobus... 94 9e-19
pir||H71037 probable transcription regulator - Pyrococcus horiko... 94 9e-19
pir||G82367 transcription regulator AsnC VC0071 [imported] - Vib... 94 9e-19
sp|P37424|LRP_KLEPN LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|21... 93 1e-18
pir||B82142 leucine-responsive regulatory protein VC1904 [import... 93 2e-18
sp|P19494|LRP_ECOLI LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|73... 92 3e-18
sp|P37425|LRP_SERMA LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|21... 92 3e-18
sp|O87635|LRP_KLEAE LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|36... 92 3e-18
sp|P37403|LRP_SALTY LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|21... 92 4e-18
sp|O07920|AZLB_BACSU TRANSCRIPTIONAL REGULATOR AZLB >gi|7444109|... 91 5e-18
pir||E82382 transcription regulator AsnC family VCA1068 [importe... 91 6e-18
emb|CAA71443.1| (Y10417) lrp [Proteus mirabilis] 90 8e-18
pir||B71206 probable leucine-responsive regulatory protein - Pyr... 89 2e-17
pir||T36151 probable asnC-family transcription regulator - Strep... 89 3e-17
emb|CAC13071.1| (AL445503) putative asnC-family transcriptional ... 89 3e-17
pir||F75341 transcription regulator, AsnC family - Deinococcus r... 88 4e-17
gi|11498192 transcriptional regulatory protein, AsnC family [Arc... 87 7e-17
pir||H82247 transcription regulator AsnC family VC1062 [imported... 87 7e-17
gb|AAC45745.1| (U42216) orf1; putative regulatory protein of Asn... 87 1e-16
pir||F75019 transcription regulator PAB1236 - Pyrococcus abyssi ... 87 1e-16
sp|P45265|LRP_HAEIN LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|10... 86 2e-16
pir||C83323 probable transcriptional regulator PA2577 [imported]... 86 2e-16
emb|CAC11747.1| (AL445064) transcription regulator related prote... 86 2e-16
sp|P42180|YGDH_PYRFU HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN G... 85 3e-16
pir||E81919 probable AsnC-family transcription regulator NMA0756... 85 3e-16
gb|AAK40503.1| Transcriptional regulator [Sulfolobus solfataricus] 85 4e-16
gb|AAB49303.1| (U85623) leucine-responsive regulatory protein [B... 85 4e-16
pir||H81182 transcription regulator, AsnC family NMB0573 [import... 85 5e-16
pir||A81059 leucine-responsive regulatory protein NMB1650 [impor... 83 1e-15
pir||A81818 AsnC-family transcription regulator NMA1905 [importe... 83 1e-15
sp|P03809|ASNC_ECOLI REGULATORY PROTEIN ASNC >gi|73064|pir||QQEC... 82 2e-15
sp|Q44333|PUTR_AGRTU PROLINE DEHYDROGENASE TRANSCRIPTIONAL ACTIV... 82 2e-15
emb|CAC12110.1| (AL445066) transcription regulator LrpA related ... 82 2e-15
pir||B70883 probable transcription regulator Rv2779c - Mycobacte... 82 3e-15
pir||A83392 probable transcription regulator PA2028 [imported] -... 82 3e-15
pir||D82983 leucine-responsive regulatory protein PA5308 [import... 82 3e-15
sp|P44580|Y224_HAEIN HYPOTHETICAL TRANSCRIPTIONAL REGULATOR HI02... 81 5e-15
pir||G64774 regulatory protein b0447 - Escherichia coli >gi|1773... 81 7e-15
pir||D70981 hypothetical protein Rv3291c - Mycobacterium tubercu... 80 2e-14
sp|P54986|YBAO_ECOLI HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN M... 79 2e-14
sp|P56901|LRP_RHIME LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|62... 77 8e-14
dbj|BAB07360.1| (AP001519) transcriptional regulator [Bacillus h... 77 8e-14
emb|CAB51578.1| (AJ242964) TinR protein [Salmonella enterica] 76 1e-13
pir||T35442 transcription regulator - Streptomyces coelicolor >g... 76 2e-13
gi|11499214 leucine responsive regulatory protein (lrp) [Archaeo... 76 2e-13
dbj|BAB04587.1| (AP001510) transcriptional regulator [Bacillus h... 76 2e-13
sp|P42179|BKDR_PSEPU BKD OPERON TRANSCRIPTIONAL REGULATOR >gi|79... 75 4e-13
gb|AAG20239.1| (AE005099) transcription regulator; Trh4 [Halobac... 75 4e-13
pir||B71223 hypothetical protein PH0045 - Pyrococcus horikoshii ... 75 5e-13
emb|CAC11402.1| (AL445063) leucine-responsive-regulatory protein... 74 9e-13
pir||C75191 transcription regulatory protein or leucine-responsi... 73 2e-12
dbj|BAA20552.1| (D89015) Lrp-family transcriptional regulators [... 73 2e-12
pir||E70068 transcription regulator Lrp/AsnC family homolog ywrC... 72 3e-12
emb|CAB76880.1| (AL159139) putative asnC-family regulatory prote... 72 3e-12
pir||T36372 probable asnC-family transcription regulator - Strep... 72 3e-12
emb|CAC01503.1| (AL391017) putative AsnC-family regulatory prote... 72 3e-12
pir||A75193 probable transcription regulator PAB2299 - Pyrococcu... 70 1e-11
pir||T35606 probable Asn-C family transcription regulator - Stre... 70 1e-11
pir||B71225 hypothetical protein PH0061 - Pyrococcus horikoshii ... 69 3e-11
pir||H75071 transcription regulatory protein, asnc family PAB065... 68 5e-11
emb|CAB92114.1| (AL356334) putative asnC-family transcriptional ... 67 9e-11
>pir||A75106 transcription regulatory protein, asnc family PAB1938 - Pyrococcus
abyssi (strain Orsay) >gi|5458073|emb|CAB49562.1|
(AJ248285) transcriptional regulatory protein, AsnC
family [Pyrococcus abyssi]
Length = 151
Score = 294 bits (744), Expect = 4e-79
Identities = 151/151 (100%), Positives = 151/151 (100%)
Query: 1 MRVSLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNP 60
MRVSLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNP
Sbjct: 1 MRVSLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNP 60
Query: 61 EALGYSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSF 120
EALGYSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSF
Sbjct: 61 EALGYSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSF 120
Query: 121 LDVIGSIPGVEGTHTMIVLKTHKETTELPIK 151
LDVIGSIPGVEGTHTMIVLKTHKETTELPIK
Sbjct: 121 LDVIGSIPGVEGTHTMIVLKTHKETTELPIK 151
>pir||E71028 probable transcription regulator - Pyrococcus horikoshii
>gi|3257946|dbj|BAA30629.1| (AP000006) 151aa long
hypothetical transcriptional regulator [Pyrococcus
horikoshii]
Length = 151
Score = 273 bits (692), Expect = 5e-73
Identities = 136/151 (90%), Positives = 147/151 (97%)
Query: 1 MRVSLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNP 60
MRV LDEID++IIKILQ DGKAPLREISKITGLAESTIHERI+KLRESGVI+KFTAI++P
Sbjct: 1 MRVPLDEIDKKIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDP 60
Query: 61 EALGYSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSF 120
EALGYSMLAFIL+KVKAGKY+EVASNL KY EI+EVYETTGDYDMVVKIRTKNSEELN+F
Sbjct: 61 EALGYSMLAFILVKVKAGKYSEVASNLAKYPEIVEVYETTGDYDMVVKIRTKNSEELNNF 120
Query: 121 LDVIGSIPGVEGTHTMIVLKTHKETTELPIK 151
LD+IGSIPGVEGTHTMIVLKTHKETTELPIK
Sbjct: 121 LDLIGSIPGVEGTHTMIVLKTHKETTELPIK 151
>gb|AAK42498.1| Transcriptional regulatory protein, AsnC family (asnC) [Sulfolobus
solfataricus]
Length = 153
Score = 130 bits (323), Expect = 9e-30
Identities = 62/146 (42%), Positives = 101/146 (68%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
LD+ID++I+ ILQ+D + P ++K+ L+E+TI+ RIK+L+E+GVI+ F ++ + +G
Sbjct: 8 LDDIDKKILNILQQDSRIPFSRLAKMLNLSEATIYVRIKRLKENGVIKGFYTEIDFDKIG 67
Query: 65 YSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFLDVI 124
S++AFILIK KY + LV+ +EI E+Y+ TG+Y V+K+R E+L LD I
Sbjct: 68 LSVVAFILIKADPKKYDNILKQLVEMKEIYEIYDVTGEYYAVLKVRVPTREDLAKVLDKI 127
Query: 125 GSIPGVEGTHTMIVLKTHKETTELPI 150
G++ GV T+TM+VL++ K+ EL +
Sbjct: 128 GNMDGVTSTYTMLVLRSIKDKKELDL 153
>pir||E75165 leucine-responsive-regulatory protein PAB0322 - Pyrococcus abyssi
(strain Orsay) >gi|5457914|emb|CAB49404.1| (AJ248284)
LEUCINE-RESPONSIVE-REGULATORY PROTEIN [Pyrococcus
abyssi]
Length = 147
Score = 120 bits (298), Expect = 8e-27
Identities = 64/144 (44%), Positives = 93/144 (64%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
LDE+D++II IL KD + REI+K +A TI+ RIKKL ESGVI+ FT +N E +G
Sbjct: 2 LDELDKKIIGILMKDSRISYREIAKELNVAVGTIYNRIKKLEESGVIQGFTLKLNYENIG 61
Query: 65 YSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFLDVI 124
Y + A + IK + K E+ + K + +M VY+ TG+YD++V + KN E++N F+ +
Sbjct: 62 YDLTAIMGIKAQGKKIREIERIIAKDKRVMCVYDVTGEYDIIVIAKFKNREDMNRFVKGV 121
Query: 125 GSIPGVEGTHTMIVLKTHKETTEL 148
SI GVE T+T +VL+ KE L
Sbjct: 122 LSIDGVEKTNTHVVLEVVKEDFRL 145
>pir||E71176 probable transcription regulator - Pyrococcus horikoshii
>gi|3258121|dbj|BAA30804.1| (AP000007) 151aa long
hypothetical transcriptional regulator [Pyrococcus
horikoshii]
Length = 151
Score = 119 bits (295), Expect = 2e-26
Identities = 61/148 (41%), Positives = 96/148 (64%)
Query: 1 MRVSLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNP 60
+++ LD +DR+I++IL KD + REI+K +A TI+ RIKKL +SGVI+ FT +N
Sbjct: 2 LKMELDALDRKILEILLKDSRTSYREIAKDLNVAVGTIYNRIKKLEDSGVIQAFTVKLNY 61
Query: 61 EALGYSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSF 120
E++GY + A I IK + K E+ + K + + VY+ TG+YD++V + +N E++N F
Sbjct: 62 ESIGYDLTAIIGIKAQGKKIREIERIIAKDKRVTCVYDVTGEYDIIVIAKFRNREDMNRF 121
Query: 121 LDVIGSIPGVEGTHTMIVLKTHKETTEL 148
+ + SI GVE T+T +VL+ KE L
Sbjct: 122 VKGVLSIDGVEKTNTHVVLEIVKEDFRL 149
>gi|11498748 transcriptional regulatory protein, AsnC family [Archaeoglobus
fulgidus] >gi|7444108|pir||C69393 transcription
regulator AsnC family homolog - Archaeoglobus fulgidus
>gi|2649438|gb|AAB90095.1| (AE001024) transcriptional
regulatory protein, AsnC family [Archaeoglobus fulgidus]
Length = 149
Score = 116 bits (287), Expect = 1e-25
Identities = 56/143 (39%), Positives = 90/143 (62%)
Query: 3 VSLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEA 62
V +DE+D +I++ LQ D + L+EIS+ G+AE T++ RI K+R+ G+I+KF +V+
Sbjct: 2 VKIDEVDIKILRELQDDARKSLKEISEKVGVAEGTVYNRINKMRKIGLIKKFIPVVDYSM 61
Query: 63 LGYSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFLD 122
LGY ++A I I + G E+ + K + VY+ TGDYD++V + K+ + LN+F+
Sbjct: 62 LGYDLIAIIGITAEGGYLTEIEKEIAKERNVTAVYDVTGDYDIIVVAKFKDRDSLNAFVK 121
Query: 123 VIGSIPGVEGTHTMIVLKTHKET 145
I + V T+TM+VL KET
Sbjct: 122 RIAGMDKVLKTYTMLVLNVVKET 144
>pir||B71235 probable transcription regulator - Pyrococcus horikoshii
>gi|3256526|dbj|BAA29209.1| (AP000001) 158aa long
hypothetical transcriptional regulator [Pyrococcus
horikoshii]
Length = 158
Score = 106 bits (263), Expect = 1e-22
Identities = 53/143 (37%), Positives = 87/143 (60%), Gaps = 1/143 (0%)
Query: 2 RVSLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPE 61
+V LDEIDR I+++LQ+DG+ EIS+ + EST+ R+ +L + GVIRKF A++NP
Sbjct: 9 KVELDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLVKEGVIRKFAALINPF 68
Query: 62 ALGYSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSF- 120
GY ++AFI + + K +V L K+ E+ + TG +D+ +++ K+ +EL F
Sbjct: 69 KAGYEIVAFIAVDAEPAKVKQVVEELAKFPEVDVLGIVTGAHDIFMQVTVKDLQELERFI 128
Query: 121 LDVIGSIPGVEGTHTMIVLKTHK 143
L+ + I G++ T T I+ K
Sbjct: 129 LEKMAKIDGIKSTETSILTSVKK 151
>sp|Q57615|Y151_METJA HYPOTHETICAL TRANSCRIPTIONAL REGULATOR PROTEIN MJ0151
>gi|2129315|pir||H64318 transcription regulator homolog
- Methanococcus jannaschii >gi|1498922|gb|AAB98133.1|
(U67472) transcriptional regulator, putative
[Methanococcus jannaschii]
Length = 148
Score = 106 bits (263), Expect = 1e-22
Identities = 54/147 (36%), Positives = 90/147 (60%), Gaps = 1/147 (0%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
LD ID +I++IL + + REI + G++E T+ R+K+L E G+I F A +NP+ LG
Sbjct: 2 LDRIDLKILRILNGNARKSFREIGRELGISEGTVRNRVKRLTEKGIITGFHASINPKNLG 61
Query: 65 YSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFL-DV 123
+ ++A + + +K K E + L + +EI+E+Y+TTG+YD V K+ E L FL +
Sbjct: 62 FEVVAILGLYIKPSKVEETLNKLKELDEIVELYQTTGEYDAVCIAILKDIESLGKFLAEK 121
Query: 124 IGSIPGVEGTHTMIVLKTHKETTELPI 150
I + V G +VL+T K+ +++PI
Sbjct: 122 IYPLVNVNGCKVTLVLRTFKDGSKMPI 148
>gb|AAG19704.1| (AE005057) transcription regulator; AsnC [Halobacterium sp. NRC-1]
Length = 149
Score = 104 bits (256), Expect = 6e-22
Identities = 49/149 (32%), Positives = 94/149 (62%), Gaps = 1/149 (0%)
Query: 3 VSLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEA 62
+ +D+ DR I++ LQ D + P EI++ ++ +T+H+R+ +L E+GVIR + A V+P+A
Sbjct: 1 MDVDDTDREILRALQADARKPFSEIAREIDMSSATVHDRVSRLEEAGVIRGYHADVDPKA 60
Query: 63 LGYSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFL- 121
+G AF+ ++V+ G+ E L E + EV TTG++D+++++ ++++ L + +
Sbjct: 61 VGLGTTAFVGLRVEQGREDETLDRLTGIEGVREVNLTTGEWDVILRLVAEDTDHLRALMF 120
Query: 122 DVIGSIPGVEGTHTMIVLKTHKETTELPI 150
+ I + G + TM+VL T E+ ELP+
Sbjct: 121 EEIADMDGFARSQTMVVLGTEYESPELPL 149
>pir||F75201 transcription regulatory protein PAB2257 - Pyrococcus abyssi
(strain Orsay) >gi|5457570|emb|CAB49061.1| (AJ248283)
transcriptional regulatory protein [Pyrococcus abyssi]
Length = 158
Score = 103 bits (255), Expect = 8e-22
Identities = 53/143 (37%), Positives = 84/143 (58%), Gaps = 1/143 (0%)
Query: 2 RVSLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPE 61
+V LDEIDR I+++LQ+DG+ EIS+ + EST+ R+ +L GVIRKF A++NP
Sbjct: 9 KVQLDEIDRAILRLLQEDGRMSYSEISRRINVPESTVRARVNRLIREGVIRKFAALINPF 68
Query: 62 ALGYSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSF- 120
GY ++AFI I + K +V L K E+ + TG +D+ +++ ++ +EL F
Sbjct: 69 KAGYEIVAFIAIDAEPAKVRQVVEELAKLPEVDVLGIVTGAHDIFMQVTVRDLQELERFI 128
Query: 121 LDVIGSIPGVEGTHTMIVLKTHK 143
L+ + I G+ T T I+ K
Sbjct: 129 LEKMAKIDGIRSTETSILTSVKK 151
>pir||B69026 transcription regulator - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622301|gb|AAB85682.1| (AE000887)
transcriptional regulator [Methanobacterium
thermoautotrophicum]
Length = 161
Score = 103 bits (254), Expect = 1e-21
Identities = 51/142 (35%), Positives = 88/142 (61%)
Query: 3 VSLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEA 62
V +D+IDR+II +L +DG+ R IS+I ++ T+H R++KL + GVI+KF I++
Sbjct: 10 VKIDDIDRKIIDLLNEDGRMSYRNISRILDVSVGTVHNRVEKLVKKGVIKKFVPIIDHSK 69
Query: 63 LGYSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFLD 122
LGY + A I +KVK G + ++ ++ VY+ TG++D ++ + +++ EL+SF+
Sbjct: 70 LGYKLTAIIGVKVKGGVLRNWETRTAYHKNVLAVYDVTGEFDAILIGKFRDTGELDSFIK 129
Query: 123 VIGSIPGVEGTHTMIVLKTHKE 144
+ S V+ T+T VL KE
Sbjct: 130 GLLSEGDVQRTYTQTVLNIVKE 151
>sp|Q58133|Y723_METJA HYPOTHETICAL TRANSCRIPTIONAL REGULATOR PROTEIN MJ0723
>gi|2129220|pir||C64390 probable transcription regulator
- Methanococcus jannaschii >gi|1591440|gb|AAB98719.1|
(U67519) transcriptional regulatory protein, AsnC family
[Methanococcus jannaschii]
Length = 156
Score = 99.5 bits (244), Expect = 2e-20
Identities = 49/140 (35%), Positives = 89/140 (63%), Gaps = 1/140 (0%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
+DE D +II+IL +DG+ +I++ G +ES+I +R+KKL E GVI+ +TAI++P +G
Sbjct: 17 MDEKDLKIIEILMRDGRKSYTDIARELGTSESSIRKRVKKLEEEGVIKGYTAIIDPSKIG 76
Query: 65 YSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFL-DV 123
Y+++A + K+ VA L K+ E+ +V+ +TGD+ ++ +I K+ +E + + +
Sbjct: 77 YNVVALTGFDTEPDKFLNVAKELCKFPEVKKVFTSTGDHMIMTEIWAKDGKEFSDLIFNK 136
Query: 124 IGSIPGVEGTHTMIVLKTHK 143
IG I G++ I+L+ K
Sbjct: 137 IGKIEGIKKICPAIILEQMK 156
>emb|CAB61666.1| (AL133213) putative AsnC-family transcriptional regulatory protein.
[Streptomyces coelicolor A3(2)]
Length = 165
Score = 99.5 bits (244), Expect = 2e-20
Identities = 51/143 (35%), Positives = 85/143 (58%), Gaps = 2/143 (1%)
Query: 4 SLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEAL 63
+++E+DR+I+++L KDG+ ++ K TGL+ S +H+R+++L + GVIR + A+V+PEA+
Sbjct: 19 AMEELDRQIVQLLVKDGRMSYTDLGKATGLSTSAVHQRVRRLEQRGVIRGYAAVVDPEAV 78
Query: 64 GYSMLAFILIK-VKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFLD 122
G M AFI +K ++A L EI + GD + ++K+R EL L
Sbjct: 79 GLPMTAFISVKPFDPSAPDDIADRLAGVPEIEACHSVAGDENYILKVRVATPHELEELLA 138
Query: 123 VIGSIPGVEGTHTMIVLKTHKET 145
+ S+ GV T T +VL T E+
Sbjct: 139 RVRSLAGV-STRTTVVLSTPYES 160
>sp|P44337|ASNC_HAEIN REGULATORY PROTEIN ASNC >gi|1075206|pir||G64077 regulatory protein
asnC - Haemophilus influenzae (strain Rd KW20)
>gi|1573550|gb|AAC22221.1| (U32738) transcriptional
regulatory protein (asnC) [Haemophilus influenzae Rd]
Length = 150
Score = 99.1 bits (243), Expect = 2e-20
Identities = 49/139 (35%), Positives = 88/139 (63%), Gaps = 2/139 (1%)
Query: 4 SLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEAL 63
++D +D++I+++L KD + P E++K G++ TIH R++K+R+SG+I+ I++ L
Sbjct: 3 NIDSLDQKILRVLTKDARTPYAEMAKNFGVSPGTIHVRVEKMRQSGIIKGTKVIIDERKL 62
Query: 64 GYSMLAFILIKVKAGK-YAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFLD 122
GY + FI I +K+ K Y +V L ++E++E Y TTG+Y + +K+ T EL+S L
Sbjct: 63 GYDVCCFIGIILKSAKDYEKVIKKLESFDEVVEAYYTTGNYSIFLKVMTHTIAELHSVLA 122
Query: 123 V-IGSIPGVEGTHTMIVLK 140
I I ++ T T+I ++
Sbjct: 123 TKIQLIDEIQSTETLISMQ 141
>pir||T46972 transcription regulator lrpA [validated] - Pyrococcus furiosus
>gi|4416541|gb|AAD20389.1| (M97860) transcriptional
regulator LrpA [Pyrococcus furiosus]
Length = 141
Score = 97.1 bits (238), Expect = 8e-20
Identities = 50/140 (35%), Positives = 85/140 (60%), Gaps = 1/140 (0%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
+DE D+ I++IL+KD + P EI+K G++E+ + +R+K L E G+I +T +NP+ LG
Sbjct: 2 IDERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGYTIKINPKKLG 61
Query: 65 YSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFL-DV 123
YS++ + K K EVA L +Y+ + E+Y ++GD+ ++ I K+ E+L + +
Sbjct: 62 YSLVTITGVDTKPEKLFEVAEKLKEYDFVKELYLSSGDHMIMAVIWAKDGEDLAEIISNK 121
Query: 124 IGSIPGVEGTHTMIVLKTHK 143
IG I GV I+L+ K
Sbjct: 122 IGKIEGVTKVCPAIILEKLK 141
>emb|CAB59580.1| (AL132662) putative transcriptional regulator [Streptomyces
coelicolor A3(2)]
Length = 145
Score = 96.7 bits (237), Expect = 1e-19
Identities = 55/140 (39%), Positives = 78/140 (55%), Gaps = 1/140 (0%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
+DEIDRR+I +LQ+D P + GL+ HER++KLRE VIR T V+PEAL
Sbjct: 1 MDEIDRRLIALLQQDATRPYAALGGEVGLSAGAAHERVRKLREQRVIRSTTVDVDPEALD 60
Query: 65 YSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFLDVI 124
+LAF+L+ A + A + EI E + G ++VK+RT +E L L +
Sbjct: 61 RGVLAFVLVDSTAW-MGDRAEDFAAVPEIQEAHVIAGSAAVLVKVRTATTERLQDVLRRL 119
Query: 125 GSIPGVEGTHTMIVLKTHKE 144
+I GV GT +VL+T E
Sbjct: 120 YAIDGVSGTQATVVLETFFE 139
>pir||E75176 transcription regulatory protein, asnc Family PAB0392 - Pyrococcus
abyssi (strain Orsay) >gi|5458002|emb|CAB49492.1|
(AJ248284) transcriptional regulatory protein, AsnC f
amily [Pyrococcus abyssi]
Length = 141
Score = 96.3 bits (236), Expect = 1e-19
Identities = 50/140 (35%), Positives = 84/140 (59%), Gaps = 1/140 (0%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
+DE D+ I+ IL KD + P EI+KI G++E+ + +R+K L E G+I +T +NP+ LG
Sbjct: 2 VDERDKIILDILSKDARTPFTEIAKILGISETAVRKRVKALEEKGIIEGYTIKINPKKLG 61
Query: 65 YSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFL-DV 123
YS++ + + K EVA L ++E + E+Y ++GD+ ++ I K+ E+L + +
Sbjct: 62 YSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWAKDGEDLADIISNK 121
Query: 124 IGSIPGVEGTHTMIVLKTHK 143
IG I GV I+L+ K
Sbjct: 122 IGKIDGVTKVCPAIILERLK 141
>emb|CAB57694.1| (Y18930) Lrp homolog (Leucine-responsive regulatory protein)
[Sulfolobus solfataricus]
Length = 157
Score = 95.2 bits (233), Expect = 3e-19
Identities = 46/148 (31%), Positives = 85/148 (57%)
Query: 3 VSLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEA 62
V LD IDRR++ L +D + LR +++ ++ +T+H R+ ++ + G+I+ F A+++
Sbjct: 9 VDLDAIDRRLLIELTRDARTSLRRLAEEMNVSPATLHNRMTRMVQEGMIKSFVALLDYSK 68
Query: 63 LGYSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFLD 122
LG+++ I+ KV E + + + VY+ G+YD+V+ + ++ EEL+SFL
Sbjct: 69 LGFALTGIIMAKVDGKHLVEFEKEIANADNVTAVYDVVGEYDVVIIAKFRSVEELDSFLK 128
Query: 123 VIGSIPGVEGTHTMIVLKTHKETTELPI 150
+ P +E T+T IVL KE + I
Sbjct: 129 QLLKNPKIERTYTSIVLNVVKEDPRIRI 156
>gb|AAK40917.1| Transcriptional regulator, putative [Sulfolobus solfataricus]
Length = 157
Score = 95.2 bits (233), Expect = 3e-19
Identities = 46/148 (31%), Positives = 85/148 (57%)
Query: 3 VSLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEA 62
V LD IDRR++ L +D + LR +++ ++ +T+H R+ ++ + G+I+ F A+++
Sbjct: 9 VDLDAIDRRLLIELTRDARTSLRRLAEEMNVSPATLHNRMTRMVQEGMIKSFVALLDYSK 68
Query: 63 LGYSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFLD 122
LG+++ I+ KV E + + + VY+ G+YD+V+ + ++ EEL+SFL
Sbjct: 69 LGFALTGIIMAKVDGKHLVEFEKEIANADNVTAVYDVVGEYDVVIIAKFRSVEELDSFLK 128
Query: 123 VIGSIPGVEGTHTMIVLKTHKETTELPI 150
+ P +E T+T IVL KE + I
Sbjct: 129 QLLKNPKIERTYTSIVLNVVKEDPRIRI 156
>pir||T45215 transcription regulator lrp [validated] - Sulfolobus acidocaldarius
>gi|2760520|emb|CAA73351.1| (Y12821)
leucine-responsive-regulatory protein [Sulfolobus
acidocaldarius]
Length = 155
Score = 93.6 bits (229), Expect = 9e-19
Identities = 42/149 (28%), Positives = 89/149 (59%)
Query: 2 RVSLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPE 61
++ +D ID++++ L KD + LR +++ ++ +T+H R+ +L + GV++ FTA+++
Sbjct: 6 KIEIDAIDKKLLIELLKDSRISLRRLAEEMNVSPATLHNRLMRLVQEGVVKGFTALIDYS 65
Query: 62 ALGYSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFL 121
LGY + + ++IKV E + + ++ VY+ G+YD+++ + ++ E+L++F+
Sbjct: 66 KLGYPVTSILMIKVDGKHILEFEKEVSNLDNVVAVYDVVGEYDVMLIAKFRSIEDLDTFI 125
Query: 122 DVIGSIPGVEGTHTMIVLKTHKETTELPI 150
+ P +E T+T IVL KE + I
Sbjct: 126 KSLLKNPKIERTYTSIVLNVVKEDPRIKI 154
>pir||H71037 probable transcription regulator - Pyrococcus horikoshii
>gi|3258021|dbj|BAA30704.1| (AP000006) 141aa long
hypothetical transcriptional regulator [Pyrococcus
horikoshii]
Length = 141
Score = 93.6 bits (229), Expect = 9e-19
Identities = 48/140 (34%), Positives = 84/140 (59%), Gaps = 1/140 (0%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
+DE D+ I++IL KD + P EI+K G++E+ + +R+K L E G+I +T +NP+ LG
Sbjct: 2 IDERDKIILEILSKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGYTIRINPKKLG 61
Query: 65 YSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFL-DV 123
YS++ + + K EVA L ++E + E+Y ++GD+ ++ I ++ E+L + +
Sbjct: 62 YSLVTITGVDTRPEKLFEVAEKLKEFEFVRELYLSSGDHMIMAVIWARDGEDLADIISNK 121
Query: 124 IGSIPGVEGTHTMIVLKTHK 143
IG I GV I+L+ K
Sbjct: 122 IGKIDGVTKVCPAIILEKLK 141
>pir||G82367 transcription regulator AsnC VC0071 [imported] - Vibrio cholerae
(group O1 strain N16961) >gi|9654467|gb|AAF93249.1|
(AE004098) transcriptional regulator AsnC [Vibrio
cholerae]
Length = 153
Score = 93.6 bits (229), Expect = 9e-19
Identities = 51/138 (36%), Positives = 84/138 (59%), Gaps = 2/138 (1%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
LDE+DR I+KIL D + P E++K ++ +TIH RI+K++ + +I+ +VN + LG
Sbjct: 7 LDELDRAILKILMDDARTPYAEMAKQFNVSPATIHVRIEKMKAADIIQGTEVVVNTKKLG 66
Query: 65 YSMLAFILIKVKAGK-YAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFL-D 122
Y + FI I + A + Y + L +E++E Y TTG Y++ VK+ ++ EEL L D
Sbjct: 67 YDVCCFIGINLNAARDYHSALAKLNALDEVVEAYYTTGAYNIFVKLMCRSIEELQHVLID 126
Query: 123 VIGSIPGVEGTHTMIVLK 140
+ +I V+ T T+I L+
Sbjct: 127 KLQAIDEVQSTETLISLQ 144
>sp|P37424|LRP_KLEPN LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|2120007|pir||S59992
transcription regulator lrp, leucine-responsive -
Klebsiella pneumoniae >gi|407918|gb|AAA75465.1| (U02274)
Lrp [Klebsiella pneumoniae]
Length = 164
Score = 93.2 bits (228), Expect = 1e-18
Identities = 53/151 (35%), Positives = 85/151 (56%), Gaps = 4/151 (2%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
LD IDR I+ LQKDG+ E+SK GL+ + ER+++L G I+ +TA++NP L
Sbjct: 12 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLD 71
Query: 65 YSMLAFILIKVKAGK---YAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFL 121
S+L F+ I + G + + S + K EEI E + +GD+D ++K R + L
Sbjct: 72 ASLLVFVEITLNRGAPDVFEQFNSAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLL 131
Query: 122 -DVIGSIPGVEGTHTMIVLKTHKETTELPIK 151
+ + +PGV T T +V++ K++ L IK
Sbjct: 132 GETLLRLPGVNDTRTYVVMEEVKQSNRLVIK 162
>pir||B82142 leucine-responsive regulatory protein VC1904 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656438|gb|AAF95052.1| (AE004266) leucine-responsive
regulatory protein [Vibrio cholerae]
Length = 164
Score = 92.8 bits (227), Expect = 2e-18
Identities = 52/151 (34%), Positives = 86/151 (56%), Gaps = 4/151 (2%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
LD IDR I+ LQKDG+ E+SK GL+ + ER+++L G I +TA++NP+ L
Sbjct: 12 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFITGYTALLNPQYLD 71
Query: 65 YSMLAFILIKVKAGK---YAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFL 121
S+L F+ I + G + + + + K ++I E + +GD+D ++K R + L
Sbjct: 72 ASLLVFVEITLNRGAPDVFEQFNAAVQKLDDIQECHLVSGDFDYLLKTRVSDMGAYRRLL 131
Query: 122 -DVIGSIPGVEGTHTMIVLKTHKETTELPIK 151
D + +PGV T T +V++ K+T +L IK
Sbjct: 132 GDTLLRLPGVNDTRTYVVMEEVKQTNQLVIK 162
>sp|P19494|LRP_ECOLI LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|73065|pir||RGECLR
leucine-responsive transcription regulator lrp
[validated] - Escherichia coli >gi|146665|gb|AAA24089.1|
(M35869) leucine-responsive-regulatory protein (Lrp)
[Escherichia coli] >gi|216586|dbj|BAA01880.1| (D11105)
leucine responsive regulatory protein [Escherichia coli]
>gi|407914|gb|AAA75439.1| (U02272) Lrp [Enterobacter
aerogenes] >gi|1651411|dbj|BAA35614.1| (D90726)
Leucine-responsive regulatory protein. [Escherichia
coli] >gi|1651417|dbj|BAA35621.1| (D90727)
Leucine-responsive regulatory protein. [Escherichia
coli] >gi|1787116|gb|AAC73975.1| (AE000191) regulator
for leucine (or lrp) regulon and high-affinity
branched-chain amino acid transport system [Escherichia
coli K12]
Length = 164
Score = 92.1 bits (225), Expect = 3e-18
Identities = 52/151 (34%), Positives = 85/151 (55%), Gaps = 4/151 (2%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
LD IDR I+ LQKDG+ E+SK GL+ + ER+++L G I+ +TA++NP L
Sbjct: 12 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLD 71
Query: 65 YSMLAFILIKVKAGK---YAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFL 121
S+L F+ I + G + + + + K EEI E + +GD+D ++K R + L
Sbjct: 72 ASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLL 131
Query: 122 -DVIGSIPGVEGTHTMIVLKTHKETTELPIK 151
+ + +PGV T T +V++ K++ L IK
Sbjct: 132 GETLLRLPGVNDTRTYVVMEEVKQSNRLVIK 162
>sp|P37425|LRP_SERMA LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|2120005|pir||S59991
transcription regulator lrp, leucine-responsive -
Serratia marcescens >gi|407921|gb|AAA75466.1| (U02276)
Lrp [Serratia marcescens]
Length = 164
Score = 92.1 bits (225), Expect = 3e-18
Identities = 52/151 (34%), Positives = 85/151 (55%), Gaps = 4/151 (2%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
LD IDR I+ LQKDG+ E+SK GL+ + ER+++L G I+ +TA++NP L
Sbjct: 12 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLD 71
Query: 65 YSMLAFILIKVKAGK---YAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFL 121
S+L F+ I + G + + + + K EEI E + +GD+D ++K R + L
Sbjct: 72 ASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLL 131
Query: 122 -DVIGSIPGVEGTHTMIVLKTHKETTELPIK 151
+ + +PGV T T +V++ K++ L IK
Sbjct: 132 GETLLRLPGVNDTRTYVVMEEVKQSNRLVIK 162
>sp|O87635|LRP_KLEAE LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|3603469|gb|AAD12584.1|
(AF090144) leucine-responsive regulatory protein
[Klebsiella aerogenes]
Length = 164
Score = 92.1 bits (225), Expect = 3e-18
Identities = 52/151 (34%), Positives = 85/151 (55%), Gaps = 4/151 (2%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
LD IDR I+ LQKDG+ E+SK GL+ + ER+++L G I+ +TA++NP L
Sbjct: 12 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLD 71
Query: 65 YSMLAFILIKVKAGK---YAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFL 121
S+L F+ I + G + + + + K EEI E + +GD+D ++K R + L
Sbjct: 72 ASLLVFVEITLNRGAPDVFEQFNAAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLL 131
Query: 122 -DVIGSIPGVEGTHTMIVLKTHKETTELPIK 151
+ + +PGV T T +V++ K++ L IK
Sbjct: 132 GETLLRLPGVNDTRTYVVMEEVKQSNRLVIK 162
>sp|P37403|LRP_SALTY LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|2120006|pir||S59993
transcription regulator lrp, leucine-responsive -
Salmonella typhimurium >gi|407916|gb|AAA75467.1|
(U02273) Lrp [Salmonella typhimurium]
Length = 164
Score = 91.7 bits (224), Expect = 4e-18
Identities = 52/151 (34%), Positives = 85/151 (55%), Gaps = 4/151 (2%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
LD IDR I+ LQKDG+ E+SK GL+ + ER+++L G I+ +TA++NP L
Sbjct: 12 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLD 71
Query: 65 YSMLAFILIKVKAG---KYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFL 121
S+L F+ I + G + + + + K EEI E + +GD+D ++K R + L
Sbjct: 72 ASLLVFVEITLNRGGPDVFEQFNAAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLL 131
Query: 122 -DVIGSIPGVEGTHTMIVLKTHKETTELPIK 151
+ + +PGV T T +V++ K++ L IK
Sbjct: 132 GETLLRLPGVNDTRTYVVMEEVKQSNRLVIK 162
>sp|O07920|AZLB_BACSU TRANSCRIPTIONAL REGULATOR AZLB >gi|7444109|pir||F69592 azlBCD
operon transcription repressor azlB - Bacillus subtilis
>gi|1926280|emb|CAA71939.1| (Y11043) transcriptional
regulator [Bacillus subtilis] >gi|1934649|gb|AAB80900.1|
(U93876) regulatory protein YrdG [Bacillus subtilis]
>gi|2635117|emb|CAB14613.1| (Z99117) transcriptional
regulator (Lrp/AsnC family) [Bacillus subtilis]
Length = 157
Score = 91.3 bits (223), Expect = 5e-18
Identities = 53/154 (34%), Positives = 83/154 (53%), Gaps = 4/154 (2%)
Query: 1 MRVSLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNP 60
M + LDE D+ I++ LQ+D +SK GL+ S R K L E+G+I+KFT IV+
Sbjct: 1 MGIMLDETDKAILRDLQEDASISNLNLSKKIGLSPSACLARTKNLVEAGIIKKFTTIVDE 60
Query: 61 EALGYSMLAFILIKVKAGKYAEVAS---NLVKYEEIMEVYETTGDYDMVVKIRTKNSEEL 117
+ LG + A LI + + S ++ K+ ++ E Y TG +D ++KI K+ E
Sbjct: 61 KKLGIEVTALALINLSPLNRETIHSFLEDINKFPQVQECYTLTGSHDYMLKIVAKDMESY 120
Query: 118 NSF-LDVIGSIPGVEGTHTMIVLKTHKETTELPI 150
+F +D + P + G T IV+ T K T +PI
Sbjct: 121 RNFIIDSLMQNPAISGVDTSIVMSTEKRTVSVPI 154
>pir||E82382 transcription regulator AsnC family VCA1068 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9658514|gb|AAF96962.1| (AE004432) transcriptional
regulator, AsnC family [Vibrio cholerae]
Length = 160
Score = 90.9 bits (222), Expect = 6e-18
Identities = 48/145 (33%), Positives = 83/145 (57%), Gaps = 4/145 (2%)
Query: 3 VSLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEA 62
+SLD +DR I++IL G+ P+ E++K+ L S ER+K+L + G IR + A ++P
Sbjct: 1 MSLDRVDRDILRILHAKGRLPVVELAKLVNLTTSPCSERVKRLEKEGYIRGYHADLDPGK 60
Query: 63 LGYSMLAFILIKVKAGKYA---EVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNS 119
LG + FI I++ ++ A + EI Y +GD+D ++K+R K+ + +
Sbjct: 61 LGLDVQVFIHIRLDQSSFSIFERFAHAVADIPEIEACYSLSGDFDTMIKVRVKDMKAYQA 120
Query: 120 FLD-VIGSIPGVEGTHTMIVLKTHK 143
F+ +GS+PGV T + V++ HK
Sbjct: 121 FMSGKLGSLPGVIQTRSEFVIEEHK 145
>emb|CAA71443.1| (Y10417) lrp [Proteus mirabilis]
Length = 164
Score = 90.5 bits (221), Expect = 8e-18
Identities = 52/151 (34%), Positives = 83/151 (54%), Gaps = 4/151 (2%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
LD IDR I+ LQKDG+ E+SK GL+ + ER+++L G I +TA++NP L
Sbjct: 12 LDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFISGYTALLNPHYLD 71
Query: 65 YSMLAFILIKVKAGK---YAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFL 121
S+L F+ I + G + + + K EEI E + +GD+D ++K R + L
Sbjct: 72 ASLLVFVEITLNRGAPDVFEQFNMAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLL 131
Query: 122 -DVIGSIPGVEGTHTMIVLKTHKETTELPIK 151
+ + +PGV T T +V++ K++ L IK
Sbjct: 132 GETLLRLPGVNDTRTYVVMEEVKQSNRLVIK 162
>pir||B71206 probable leucine-responsive regulatory protein - Pyrococcus
horikoshii >gi|3258358|dbj|BAA31041.1| (AP000007) 150aa
long hypothetical leucine-responsive regulatory protein
[Pyrococcus horikoshii]
Length = 150
Score = 89.3 bits (218), Expect = 2e-17
Identities = 50/144 (34%), Positives = 82/144 (56%), Gaps = 4/144 (2%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
LD++DRR+++ L+ + + + +SK G+ +T+H RIK+L E G+I KFT N + L
Sbjct: 5 LDKVDRRLLEELKNNARENIATLSKKLGIPRTTVHYRIKRLVEEGIIEKFTIKPNYKKLN 64
Query: 65 YSMLAFILIKVKAGK---YAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSF- 120
AFILI+ EVA + + + EV+ G++D+++K+R N+EE+
Sbjct: 65 LGTTAFILIRYDPDSGLTQREVAEQIARIPGVYEVHLVAGEWDLLLKVRASNAEEIGRIV 124
Query: 121 LDVIGSIPGVEGTHTMIVLKTHKE 144
+D + I GV T TM+ T KE
Sbjct: 125 IDKLREIRGVGQTVTMVSFVTVKE 148
>pir||T36151 probable asnC-family transcription regulator - Streptomyces
coelicolor >gi|5531377|emb|CAB51009.1| (AL096852)
putative asnC-family transcriptional regulator
[Streptomyces coelicolor A3(2)]
Length = 163
Score = 88.5 bits (216), Expect = 3e-17
Identities = 44/146 (30%), Positives = 86/146 (58%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
+D +D RII +L ++ + + E+S+ G+A T R+ +L+ +GVIR F V+P ALG
Sbjct: 6 IDRLDGRIIGLLAREPRIGVLEMSRRLGVARGTAQARLDRLQSNGVIRGFGPEVDPAALG 65
Query: 65 YSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFLDVI 124
Y + AF ++++ G+ A+V ++L E++E++ TTG DM+ ++ +++ +L +D +
Sbjct: 66 YPVTAFATLEIRQGQGADVRAHLATVPEVLELHTTTGTGDMLCRLVARSNADLQRVIDRV 125
Query: 125 GSIPGVEGTHTMIVLKTHKETTELPI 150
G+ T IV++ +P+
Sbjct: 126 VGFDGIVRAATAIVMENPVPLRIIPL 151
>emb|CAC13071.1| (AL445503) putative asnC-family transcriptional regulatory protein
[Streptomyces coelicolor A3(2)]
Length = 158
Score = 88.5 bits (216), Expect = 3e-17
Identities = 44/148 (29%), Positives = 83/148 (55%)
Query: 3 VSLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEA 62
+++DE+D RI+++L + + +RE +++ G+A T+ R+ +L GVI ++P A
Sbjct: 1 MAVDELDTRILRLLLEQPRTSVREYARLLGIARGTLQARLDRLERDGVITGTAPSLSPAA 60
Query: 63 LGYSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFLD 122
LG+ +LAF+ I+V G EV L EI+E + TG D++ ++ +++ L +
Sbjct: 61 LGHPVLAFVHIEVTQGHLDEVGEALAAVPEIVEAFSITGGGDLLTRVVARDNAHLEDVVQ 120
Query: 123 VIGSIPGVEGTHTMIVLKTHKETTELPI 150
+ S+PGV T + + L+ LP+
Sbjct: 121 KLISLPGVVRTRSEVALRERVPHRLLPL 148
>pir||F75341 transcription regulator, AsnC family - Deinococcus radiodurans
(strain R1) >gi|6459677|gb|AAF11448.1|AE002028_10
(AE002028) transcriptional regulator, AsnC family
[Deinococcus radiodurans]
Length = 195
Score = 88.2 bits (215), Expect = 4e-17
Identities = 48/151 (31%), Positives = 85/151 (55%), Gaps = 6/151 (3%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
LD DR+I+ ILQ+D + E++ GL + R+++L E GVI ++ A+++P+ +
Sbjct: 43 LDPTDRQILSILQRDARIANTELADEIGLTPAPTLRRVRRLEEEGVIHRYVALLDPKLVN 102
Query: 65 YSMLAFILI----KVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSF 120
++ + + + K G + + A ++ E++E Y GD D ++K+ N + F
Sbjct: 103 RDLMVMVRVTLDKQTKQG-FQDFAEHMRARPEVLECYLCLGDTDYLLKVCVPNLDAYQRF 161
Query: 121 L-DVIGSIPGVEGTHTMIVLKTHKETTELPI 150
L DV+ +IPGV T + IV+K K TT LP+
Sbjct: 162 LVDVLAAIPGVRNTDSTIVVKQEKYTTSLPL 192
>gi|11498192 transcriptional regulatory protein, AsnC family [Archaeoglobus
fulgidus] >gi|7444088|pir||H69322 transcription
regulator AsnC family homolog - Archaeoglobus fulgidus
>gi|2650037|gb|AAB90654.1| (AE001064) transcriptional
regulatory protein, AsnC family [Archaeoglobus fulgidus]
Length = 145
Score = 87.4 bits (213), Expect = 7e-17
Identities = 44/145 (30%), Positives = 86/145 (58%), Gaps = 3/145 (2%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
+DE D I+ L KD + L E++++ ++ S+IH+R+KKL + GVI ++TA++NP+
Sbjct: 1 MDEKDMLILSELVKDSRKTLSELAEMLDMSVSSIHKRVKKLEKEGVIERYTAVINPDVFD 60
Query: 65 YSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFLDVI 124
++ AF+LI A +V +N+ + ++EVY+ G+++M+ K+R+ + +++ I
Sbjct: 61 -TVTAFLLI--SAENPEKVFNNIKAMDNVVEVYKALGNFNMIAKVRSSDLDKIGEITSKI 117
Query: 125 GSIPGVEGTHTMIVLKTHKETTELP 149
++ GV ++ K KE P
Sbjct: 118 SAMEGVMMVECIVTTKRLKEEIWFP 142
>pir||H82247 transcription regulator AsnC family VC1062 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655528|gb|AAF94221.1| (AE004187) transcriptional
regulator, AsnC family [Vibrio cholerae]
Length = 178
Score = 87.4 bits (213), Expect = 7e-17
Identities = 45/150 (30%), Positives = 86/150 (57%), Gaps = 4/150 (2%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
LD++DR+I+ ILQ+D L E+++ L + +R+KK+ E GVIR+ A+++ +AL
Sbjct: 29 LDKVDRQILAILQQDCTVSLNELAEAVNLTTTPCWKRLKKMEEGGVIRERVALLDAQALD 88
Query: 65 YSMLAFILIKVKAGK---YAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFL 121
S AF+++ Y + + ++ E+ME Y G+YD ++K++ K+ + F
Sbjct: 89 LSFTAFVMVTTNNHSHEWYCRFVTAVEEFPEVMEFYRMAGEYDYMMKVQVKDMPCFDRFY 148
Query: 122 -DVIGSIPGVEGTHTMIVLKTHKETTELPI 150
++ SI G+ + +++ K TT+LP+
Sbjct: 149 KKLVNSIEGLNKVTSTFAMESLKYTTQLPL 178
>gb|AAC45745.1| (U42216) orf1; putative regulatory protein of AsnC-Lrp family
[Rhodococcus erythropolis]
Length = 170
Score = 86.6 bits (211), Expect = 1e-16
Identities = 40/137 (29%), Positives = 83/137 (60%)
Query: 3 VSLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEA 62
+S+D++D +++ +L KD + + E++ G+A +T+ R+K++ +G++ F +N
Sbjct: 2 LSIDKLDVQLLGLLSKDSRMSVAELANSLGVARNTVQSRMKRMESNGLLTGFRPNLNLPE 61
Query: 63 LGYSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFLD 122
+G + AF+ ++++ GK + VA +L + E++E++ TTG D++V++ T L +
Sbjct: 62 VGIPIQAFVGLELEQGKISAVARSLTELPEVIEIHATTGREDLLVRVATSTHAALQKLAE 121
Query: 123 VIGSIPGVEGTHTMIVL 139
I S+PGV + T I L
Sbjct: 122 QIVSLPGVTHSTTTIAL 138
>pir||F75019 transcription regulator PAB1236 - Pyrococcus abyssi (strain Orsay)
>gi|5459110|emb|CAB50596.1| (AJ248288) TRANSCRIPTIONAL
REGULATOR [Pyrococcus abyssi]
Length = 150
Score = 86.6 bits (211), Expect = 1e-16
Identities = 49/144 (34%), Positives = 82/144 (56%), Gaps = 4/144 (2%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
LD++DRR+++ L+ + + + +SK G+ +T+H RIK+L E G+I +FT N + L
Sbjct: 5 LDKVDRRLLEELKINARENIATLSKKLGIPRTTVHYRIKRLVEEGIIERFTIKPNYKKLN 64
Query: 65 YSMLAFILIKVKAGK---YAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSF- 120
AFILI+ +VA + K + EV+ G++D+++K+R N+EE+
Sbjct: 65 LGTTAFILIRYDPDSGLTQRQVAEQIAKIPGVYEVHIIAGEWDLLLKVRASNAEEVGRIV 124
Query: 121 LDVIGSIPGVEGTHTMIVLKTHKE 144
+D + I GV T TM+ T KE
Sbjct: 125 IDKLREIRGVGQTVTMVSFDTVKE 148
>sp|P45265|LRP_HAEIN LEUCINE-RESPONSIVE REGULATORY PROTEIN >gi|1074961|pir||H64131
transcription regulator HI1596, leucine-responsive -
Haemophilus influenzae (strain Rd KW20)
>gi|1574439|gb|AAC23241.1| (U32833) leucine responsive
regulatory protein (lrp) [Haemophilus influenzae Rd]
Length = 166
Score = 86.2 bits (210), Expect = 2e-16
Identities = 51/152 (33%), Positives = 85/152 (55%), Gaps = 4/152 (2%)
Query: 4 SLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEAL 63
+LD ID +I+ LQ++GK ++SK GL+ + ER+K+L + GVI + A++NPE L
Sbjct: 15 ALDAIDIKILNELQRNGKISNIDLSKKVGLSPTPCLERVKRLEKQGVIMGYRALLNPELL 74
Query: 64 GYSMLAFILIKVKAGK---YAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSF 120
+L + I + GK + E + + EEI E + +GD+D ++K R + E
Sbjct: 75 DAPLLVIVEITLVRGKPDVFEEFNAAIQALEEIQECHLVSGDFDYLLKTRVADMAEYRKL 134
Query: 121 L-DVIGSIPGVEGTHTMIVLKTHKETTELPIK 151
L + +PGV T T +V++ K+T L +K
Sbjct: 135 LGTTLLRLPGVNDTRTYVVMEEVKQTNFLVLK 166
>pir||C83323 probable transcriptional regulator PA2577 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948639|gb|AAG05965.1|AE004686_3 (AE004686) probable
transcriptional regulator [Pseudomonas aeruginosa]
Length = 145
Score = 85.8 bits (209), Expect = 2e-16
Identities = 45/136 (33%), Positives = 78/136 (57%), Gaps = 3/136 (2%)
Query: 6 DEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALGY 65
D+ID+R+I L D + L+ +++++GL+ ++ ER++KL E GVIR +T V+P GY
Sbjct: 3 DDIDQRLINALMADSRLSLKALAQVSGLSAPSVAERLRKLEERGVIRGYTLDVDPRCFGY 62
Query: 66 SMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFLDVIG 125
A + I+ G+ EV + E E + TGD + +++ ++ E+L++ LD
Sbjct: 63 QFQAIVRIRPLPGRLHEVERQIQDIAEFTECDKVTGDDCFIARLQVRSMEQLDTLLD--- 119
Query: 126 SIPGVEGTHTMIVLKT 141
I G T+T IV K+
Sbjct: 120 RINGYAETNTAIVKKS 135
>emb|CAC11747.1| (AL445064) transcription regulator related protein [Thermoplasma
acidophilum]
Length = 143
Score = 85.8 bits (209), Expect = 2e-16
Identities = 45/143 (31%), Positives = 89/143 (61%), Gaps = 4/143 (2%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
+DE D +I+ L ++ + + ++S++ + TI+ER++ + +SG+I+KFT + + +ALG
Sbjct: 1 MDEKDIQILNYLMENARDKISDMSRVLDIPRVTIYERMQNMIKSGIIKKFTIVPDYKALG 60
Query: 65 YSMLAFILIKV--KAG-KYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSF- 120
++AFILI K G E+A+ + ++++ VY G++D+++K+R ++E + +F
Sbjct: 61 VPVVAFILIAYTPKDGLSQRELAAKIANFKDVENVYIIAGEWDLLIKVRESSTEAVGNFV 120
Query: 121 LDVIGSIPGVEGTHTMIVLKTHK 143
LD + +PGVE T+ V K
Sbjct: 121 LDKLREMPGVERAQTITVFSEVK 143
>sp|P42180|YGDH_PYRFU HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN GDH 3'REGION
Length = 120
Score = 85.4 bits (208), Expect = 3e-16
Identities = 38/99 (38%), Positives = 65/99 (65%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
+DE D+ I++IL+KD + P EI+K G++E+ + +R+K L E G+I +T +NP+ LG
Sbjct: 2 IDERDKIILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGYTIKINPKKLG 61
Query: 65 YSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDY 103
YS++ + K K EVA L +Y+ + E+Y ++GD+
Sbjct: 62 YSLVTITGVDTKPEKLFEVAEKLKEYDFVKELYLSSGDH 100
>pir||E81919 probable AsnC-family transcription regulator NMA0756 [imported] -
Neisseria meningitidis (group A strain Z2491)
>gi|7379477|emb|CAB84039.1| (AL162754) putative
AsnC-family transcriptional regulator [Neisseria
meningitidis Z2491]
Length = 160
Score = 85.4 bits (208), Expect = 3e-16
Identities = 44/152 (28%), Positives = 94/152 (60%), Gaps = 3/152 (1%)
Query: 2 RVSLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPE 61
+++LD+ D +I+++LQ++G+ E+S+ L+ S R+K+L ++G++R++ A+++PE
Sbjct: 3 QLTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPE 62
Query: 62 ALGYSMLAFILIKVKAGKYA--EVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNS 119
++ + AFI + ++ K A + A+++ K+ E++ + TG+ D +++ + +
Sbjct: 63 SVNLGLQAFIRVSIRKAKDAREDFAASVRKWPEVLSCFALTGETDYLLQAFFTDMNAFSH 122
Query: 120 F-LDVIGSIPGVEGTHTMIVLKTHKETTELPI 150
F LD + S GV+ + VLK K+TT LP+
Sbjct: 123 FVLDTLLSHHGVQDAQSSFVLKEIKQTTSLPL 154
>gb|AAK40503.1| Transcriptional regulator [Sulfolobus solfataricus]
Length = 142
Score = 85.0 bits (207), Expect = 4e-16
Identities = 48/139 (34%), Positives = 83/139 (59%), Gaps = 4/139 (2%)
Query: 4 SLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEAL 63
++DE D +I++IL+K+ + P I+K ++E+ I +RI+KL G+I++FT E
Sbjct: 5 NIDESDLKILEILKKNARTPYTLIAKELKVSEAAIRKRIEKLIRQGIIKRFTIEYELEN- 63
Query: 64 GYSMLAFILIKVKAG-KYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFLD 122
+ A ++++ E++ + K + VYETTGDYD++V +R N +N +D
Sbjct: 64 --EIRAIVMVQSTPQIPTPEISKKIAKIPGVEVVYETTGDYDILVIVRGTNITSINRTID 121
Query: 123 VIGSIPGVEGTHTMIVLKT 141
I SI GV GT++ I+L+T
Sbjct: 122 EIRSIQGVVGTNSTIILRT 140
>gb|AAB49303.1| (U85623) leucine-responsive regulatory protein [Bradyrhizobium
japonicum]
Length = 153
Score = 85.0 bits (207), Expect = 4e-16
Identities = 49/152 (32%), Positives = 82/152 (53%), Gaps = 4/152 (2%)
Query: 3 VSLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEA 62
+ LD +DRRI+ ILQ+DG+ E+++ GL+ ++I ER+K+L+ G + + A +NP
Sbjct: 1 MELDRLDRRILSILQEDGRIANVELAERIGLSPTSIGERLKRLQREGFVEGYGARLNPHR 60
Query: 63 LGYSMLAFI---LIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNS 119
LG +L F+ L K + A + E++E + G +D +VK R +
Sbjct: 61 LGLGLLVFVEVLLDKTTPDNFERFARAVKLAPEVLECHMVAGGFDYLVKARLADMTAYRR 120
Query: 120 FL-DVIGSIPGVEGTHTMIVLKTHKETTELPI 150
FL + + S+PGV T T V++ K LP+
Sbjct: 121 FLGETLLSMPGVRETRTYAVMEEIKRDGPLPV 152
>pir||H81182 transcription regulator, AsnC family NMB0573 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225801|gb|AAF41001.1| (AE002413) transcriptional
regulator, AsnC family [Neisseria meningitidis MC58]
Length = 187
Score = 84.7 bits (206), Expect = 5e-16
Identities = 44/152 (28%), Positives = 93/152 (60%), Gaps = 3/152 (1%)
Query: 2 RVSLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPE 61
+++LD+ D +I+++LQ++G+ E+S+ L+ S R+K+L ++G++R++ A+++PE
Sbjct: 30 QLTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPE 89
Query: 62 ALGYSMLAFILIKVKAGKYA--EVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNS 119
++ + AFI + ++ K A + A+++ K+ E++ + TG+ D +++ + +
Sbjct: 90 SVNLGLQAFIRVSIRKAKDAREDFAASVRKWPEVLSCFALTGETDYLLQAFFTDMNAFSH 149
Query: 120 F-LDVIGSIPGVEGTHTMIVLKTHKETTELPI 150
F LD + S GV+ + VLK K TT LP+
Sbjct: 150 FVLDTLLSHHGVQDAQSSFVLKEIKHTTSLPL 181
>pir||A81059 leucine-responsive regulatory protein NMB1650 [imported] -
Neisseria meningitidis (group B strain MD58)
>gi|7226901|gb|AAF41999.1| (AE002515) leucine-responsive
regulatory protein [Neisseria meningitidis MC58]
Length = 154
Score = 83.1 bits (202), Expect = 1e-15
Identities = 45/153 (29%), Positives = 92/153 (59%), Gaps = 10/153 (6%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
LD+ID RI+KILQ++ + P+ E+++ GL+ + + ER+++L I + A +NP LG
Sbjct: 4 LDKIDFRILKILQQNARIPMTELAEKVGLSTTPVTERVRRLEREHYISGYHAHLNPHLLG 63
Query: 65 YSMLAFILIKV--KAGK-YAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFL 121
+L F+ +K+ K+G + + ++K +IME + +G+YD ++K+R +++++
Sbjct: 64 KPLLVFVELKLQSKSGNIFEDFKKEVLKIPQIMECHLVSGEYDYLIKVRL---PDMSAYR 120
Query: 122 DVIGSI----PGVEGTHTMIVLKTHKETTELPI 150
D++G+I P + + +V++ KE L +
Sbjct: 121 DMLGNILLQLPAASESRSYVVMEEVKENPVLDL 153
>pir||A81818 AsnC-family transcription regulator NMA1905 [imported] - Neisseria
meningitidis (group A strain Z2491)
>gi|7380539|emb|CAB85126.1| (AL162757) AsnC-family
transcriptional regulator [Neisseria meningitidis Z2491]
Length = 154
Score = 83.1 bits (202), Expect = 1e-15
Identities = 45/153 (29%), Positives = 92/153 (59%), Gaps = 10/153 (6%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
LD+ID RI+KILQ++ + P+ E+++ GL+ + + ER+++L I + A +NP LG
Sbjct: 4 LDKIDFRILKILQQNARIPMMELAEKVGLSTTPVTERVRRLEREHYISGYHAHLNPHLLG 63
Query: 65 YSMLAFILIKV--KAGK-YAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFL 121
+L F+ +K+ K+G + + ++K +IME + +G+YD ++K+R +++++
Sbjct: 64 KPLLVFVELKLQSKSGNIFEDFKKEVLKIPQIMECHLVSGEYDYLIKVRL---PDMSAYR 120
Query: 122 DVIGSI----PGVEGTHTMIVLKTHKETTELPI 150
D++G+I P + + +V++ KE L +
Sbjct: 121 DMLGNILLQLPAASESRSYVVMEEVKENPVLDL 153
>sp|P03809|ASNC_ECOLI REGULATORY PROTEIN ASNC >gi|73064|pir||QQECE1 regulatory protein
asnC - Escherichia coli >gi|290592|gb|AAA62095.1|
(L10328) regulatory protein [Escherichia coli]
>gi|455179|gb|AAA24252.1| (K00826) 17K protein
[Escherichia coli] >gi|1790182|gb|AAC76766.1| (AE000451)
regulator for asnA, asnC and gidA [Escherichia coli K12]
>gi|223848|prf||1002215B protein 17KD [Escherichia coli]
Length = 152
Score = 82.3 bits (200), Expect = 2e-15
Identities = 44/138 (31%), Positives = 81/138 (57%), Gaps = 2/138 (1%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
+D +DR I++ L + + E++K G++ TIH R++K++++G+I V+P+ LG
Sbjct: 6 IDNLDRGILEALMGNARTAYAELAKQFGVSPGTIHVRVEKMKQAGIITGARIDVSPKQLG 65
Query: 65 YSMLAFILIKVKAGK-YAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFL-D 122
Y + FI I +K+ K Y + L +E+ E Y TTG Y + +K+ ++ + L L +
Sbjct: 66 YDVGCFIGIILKSAKDYPSALAKLESLDEVTEAYYTTGHYSIFIKVMCRSIDALQHVLIN 125
Query: 123 VIGSIPGVEGTHTMIVLK 140
I +I ++ T T+IVL+
Sbjct: 126 KIQTIDEIQSTETLIVLQ 143
>sp|Q44333|PUTR_AGRTU PROLINE DEHYDROGENASE TRANSCRIPTIONAL ACTIVATOR
>gi|1262197|gb|AAC43979.1| (U39263) Prp [Agrobacterium
tumefaciens] >gi|1588857|prf||2209368D prp gene
[Agrobacterium tumefaciens]
Length = 156
Score = 82.3 bits (200), Expect = 2e-15
Identities = 45/145 (31%), Positives = 83/145 (57%), Gaps = 4/145 (2%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
LD D +I++ L +DG+ + ++SK GL+++ R+K+L + G I F A++NP+ LG
Sbjct: 10 LDHFDLKILEALSEDGRMSVLQLSKRVGLSKTPCQTRLKRLVDEGYILGFRAVLNPQKLG 69
Query: 65 YSMLAFILIKV---KAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFL 121
+AF +K+ + E + + K +E+ E + G +D ++K+RT + + L
Sbjct: 70 VDHIAFAEVKLSDTREKALEEFNTAVRKIKEVEECHMIAGAFDYLLKVRTSDIRKYRRVL 129
Query: 122 -DVIGSIPGVEGTHTMIVLKTHKET 145
+ I S+P V T T +V+++ KET
Sbjct: 130 GEKISSLPSVSNTSTFVVMQSVKET 154
>emb|CAC12110.1| (AL445066) transcription regulator LrpA related protein
[Thermoplasma acidophilum]
Length = 132
Score = 82.3 bits (200), Expect = 2e-15
Identities = 43/136 (31%), Positives = 78/136 (56%), Gaps = 6/136 (4%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
+D+ DR I+ +L + + EI+K+ ++E T+ +RIKK+ + G+I++FT + + +
Sbjct: 3 VDQKDRDILNLLVDNARISNTEIAKVLNVSEGTVRKRIKKMMDDGIIKRFTVETSDDTID 62
Query: 65 YSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFLDVI 124
A +L+K+ +Y + + EVYE TG D+ ++IRT +++ LN +D I
Sbjct: 63 ----ALVLVKIDNKRYRDALQRI--KSRFREVYEFTGKIDVAIRIRTDSTDNLNRIVDQI 116
Query: 125 GSIPGVEGTHTMIVLK 140
I GV T T+I L+
Sbjct: 117 REIDGVLDTDTLIRLQ 132
>pir||B70883 probable transcription regulator Rv2779c - Mycobacterium
tuberculosis (strain H37RV) >gi|2624301|emb|CAA15574.1|
(AL008967) hypothetical protein Rv2779c [Mycobacterium
tuberculosis]
Length = 171
Score = 81.9 bits (199), Expect = 3e-15
Identities = 42/140 (30%), Positives = 80/140 (57%), Gaps = 4/140 (2%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
LDE+DRRI+ +L D + P ++ G+A ST H R+++L + GVIR F ++P A+G
Sbjct: 24 LDEVDRRILSLLHGDARMPNNALADTVGIAPSTCHGRVRRLVDLGVIRGFYTDIDPVAVG 83
Query: 65 YSMLAFILIKVKA---GKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSF- 120
+ A I + +++ GK + + ++M+VY G D ++ + +++E+L SF
Sbjct: 84 LPLQAMISVNLQSSARGKIRSFIQQIRRKRQVMDVYFLAGADDFILHVAARDTEDLRSFV 143
Query: 121 LDVIGSIPGVEGTHTMIVLK 140
++ + + V GT T ++ +
Sbjct: 144 VENLNADADVAGTQTSLIFE 163
>pir||A83392 probable transcription regulator PA2028 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9948033|gb|AAG05416.1|AE004629_5 (AE004629) probable
transcriptional regulator [Pseudomonas aeruginosa]
Length = 157
Score = 81.9 bits (199), Expect = 3e-15
Identities = 44/154 (28%), Positives = 87/154 (55%), Gaps = 4/154 (2%)
Query: 1 MRVSLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNP 60
M + LD D+RI+ +LQ++ EI++ GL++S RI++L+E GVIRK +++
Sbjct: 1 MSIPLDIYDQRILALLQEESSLSTAEIAERIGLSQSPCWRRIQRLKEEGVIRKQVTLLDR 60
Query: 61 EALGYSMLAFILIKVKA---GKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEEL 117
+ +G + F IK+ A + A + ++ E++E + G D +++I T++ E
Sbjct: 61 KKIGLNTQVFAQIKLNAHGRKNLTDFAEAMHQFPEVLECHVLMGAVDFMLRIVTRDIESY 120
Query: 118 NS-FLDVIGSIPGVEGTHTMIVLKTHKETTELPI 150
F + + ++PG++ ++++ L K TT LP+
Sbjct: 121 ERFFFEKLSAVPGIQEVNSIVALSEIKSTTTLPL 154
>pir||D82983 leucine-responsive regulatory protein PA5308 [imported] -
Pseudomonas aeruginosa (strain PAO1)
>gi|9951624|gb|AAG08693.1|AE004943_9 (AE004943)
leucine-responsive regulatory protein [Pseudomonas
aeruginosa]
Length = 162
Score = 81.9 bits (199), Expect = 3e-15
Identities = 46/150 (30%), Positives = 86/150 (56%), Gaps = 4/150 (2%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
LD+IDR I++ILQ++G+ E+ + GL+ + ER+++L G+I + A +NP+ L
Sbjct: 11 LDKIDRNILRILQEEGRISFTELGERVGLSTTPCTERVRRLEREGLIMGYHARLNPQHLK 70
Query: 65 YSMLAFILIKV--KAG-KYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFL 121
S+L F+ I + K+G + E ++K ++E + +G +D +VK R L
Sbjct: 71 ASLLVFVEISLDYKSGDTFEEFRRAVLKLPHVLECHLVSGHFDYLVKARISEMASYRKLL 130
Query: 122 -DVIGSIPGVEGTHTMIVLKTHKETTELPI 150
D++ +P V + + IV++ KE+ +LP+
Sbjct: 131 GDILLKLPHVRESKSYIVMEEVKESLDLPV 160
>sp|P44580|Y224_HAEIN HYPOTHETICAL TRANSCRIPTIONAL REGULATOR HI0224
>gi|1074960|pir||B64056 glutamate uptake regulatory
protein homolog - Haemophilus influenzae (strain Rd
KW20) >gi|1573188|gb|AAC21893.1| (U32708)
transcriptional regulator, putative [Haemophilus
influenzae Rd]
Length = 168
Score = 81.1 bits (197), Expect = 5e-15
Identities = 38/120 (31%), Positives = 76/120 (62%), Gaps = 3/120 (2%)
Query: 4 SLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEAL 63
+LD++DR I+ +LQ+D PL+E+S+ + +T R++ L +SG+I K A+V+P+A+
Sbjct: 18 TLDKLDRHILNVLQQDAMIPLKELSEKVNSSVATCQRRVQSLTDSGIITKRVAVVSPKAV 77
Query: 64 GYSMLAFILIKV--KAGKYAEVASNLVKYE-EIMEVYETTGDYDMVVKIRTKNSEELNSF 120
G ++ F+++++ + Y E ++ E E++ YE +GDYD ++ + K+ E ++F
Sbjct: 78 GRTISVFVMVEMDNQHSYYQEQFERKMRQEDEVVSCYEISGDYDFMLLLHAKDMESYHAF 137
>pir||G64774 regulatory protein b0447 - Escherichia coli
>gi|1773131|gb|AAB40203.1| (U82664) similar to Z.
mobilis glutamate uptake regulatory protein [Escherichia
coli] >gi|1786652|gb|AAC73550.1| (AE000151) putative
LRP-like transcriptional regulator [Escherichia coli
K12]
Length = 181
Score = 80.8 bits (196), Expect = 7e-15
Identities = 39/154 (25%), Positives = 87/154 (56%), Gaps = 4/154 (2%)
Query: 2 RVSLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPE 61
R LD+IDR+++ +LQ+D L+ +++ L + +R+K+L + G++ A+++PE
Sbjct: 28 RAMLDKIDRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLEDDGILIGKVALLDPE 87
Query: 62 ALGYSMLAFILIKVK---AGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELN 118
+G + AF+LIK + + Y + + + E++ + G+YD +++++ + + +
Sbjct: 88 KIGLGLTAFVLIKTQHHSSEWYCRFVTVVTEMPEVLGFWRMAGEYDYLMRVQVADMKRYD 147
Query: 119 SFLD-VIGSIPGVEGTHTMIVLKTHKETTELPIK 151
F ++ S+PG+ + ++ K TT LPI+
Sbjct: 148 EFYKRLVNSVPGLSDVTSSFAMEQIKYTTSLPIE 181
>pir||D70981 hypothetical protein Rv3291c - Mycobacterium tuberculosis (strain
H37RV) >gi|1877346|emb|CAB07073.1| (Z92771) hypothetical
protein Rv3291c [Mycobacterium tuberculosis]
Length = 150
Score = 79.6 bits (193), Expect = 2e-14
Identities = 42/150 (28%), Positives = 80/150 (53%), Gaps = 1/150 (0%)
Query: 1 MRVSLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNP 60
M +LD+IDR +++ L DG+A L E++ GL+ S + R+++L GV++ ++A +NP
Sbjct: 1 MNEALDDIDRILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINP 60
Query: 61 EALGYSMLAFILI-KVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNS 119
EA+G+ + AF+ I + + + + L EE+ Y G+ V+ +R ++ L
Sbjct: 61 EAVGHLLSAFVAITPLDPSQPDDAPARLEHIEEVESCYSVAGEESYVLLVRVASARALED 120
Query: 120 FLDVIGSIPGVEGTHTMIVLKTHKETTELP 149
L I + V T+I+ + + +P
Sbjct: 121 LLQRIRTTANVRTRSTIILNTFYSDRQHIP 150
>sp|P54986|YBAO_ECOLI HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN MDL-COF INTERGENIC REGION
>gi|1580718|dbj|BAA11651.1| (D82943) YbaO [Escherichia
coli]
Length = 152
Score = 79.2 bits (192), Expect = 2e-14
Identities = 38/151 (25%), Positives = 86/151 (56%), Gaps = 4/151 (2%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
LD+IDR+++ +LQ+D L+ +++ L + +R+K+L + G++ A+++PE +G
Sbjct: 2 LDKIDRKLLALLQQDCTLSLQALAEAVNLTTTPCWKRLKRLEDDGILIGKVALLDPEKIG 61
Query: 65 YSMLAFILIKVK---AGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFL 121
+ AF+LIK + + Y + + + E++ + G+YD +++++ + + + F
Sbjct: 62 LGLTAFVLIKTQHHSSEWYCRFVTVVTEMPEVLGFWRMAGEYDYLMRVQVADMKRYDEFY 121
Query: 122 D-VIGSIPGVEGTHTMIVLKTHKETTELPIK 151
++ S+PG+ + ++ K TT LPI+
Sbjct: 122 KRLVNSVPGLSDVTSSFAMEQIKYTTSLPIE 152
>sp|P56901|LRP_RHIME LEUCINE-RESPONSIVE REGULATORY PROTEIN
>gi|6224915|gb|AAF06012.1|AF193023_6 (AF193023) Lrp
[Sinorhizobium meliloti]
Length = 156
Score = 77.3 bits (187), Expect = 8e-14
Identities = 42/154 (27%), Positives = 85/154 (54%), Gaps = 4/154 (2%)
Query: 1 MRVSLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNP 60
+RV LD ID +I++ LQ DG+ E+++ G++ R++KL E+GVIR + A++N
Sbjct: 3 VRVELDAIDMKILRELQDDGRITNVELAERVGISAPPCLRRVRKLEEAGVIRGYRALLNA 62
Query: 61 EALGYSMLAFILIKVKAGKYAEV---ASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEEL 117
ALGY ++AF ++ +K A + A+ + + E + +G+ D +++ +N
Sbjct: 63 SALGYDLVAFCMVGLKHQSDANLKAFAARTASWPLVREAWMVSGESDFLLQCVAENLASF 122
Query: 118 NSF-LDVIGSIPGVEGTHTMIVLKTHKETTELPI 150
F ++ + + V+ TM+ ++ K+ ++ I
Sbjct: 123 QDFVIEELTATENVDTVRTMLTIRQVKDACQVEI 156
>dbj|BAB07360.1| (AP001519) transcriptional regulator [Bacillus halodurans]
Length = 152
Score = 77.3 bits (187), Expect = 8e-14
Identities = 43/144 (29%), Positives = 84/144 (57%), Gaps = 2/144 (1%)
Query: 3 VSLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEA 62
V LD++D I+++LQ +GK +I+K ++E T+ RI ++ + V +F ++P
Sbjct: 2 VKLDDVDMSILQLLQDNGKRSYTDIAKRINVSEGTVRTRINRMLKERVF-EFIIHMDPNK 60
Query: 63 LGYSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFLD 122
+G ++ A I IK + GK +A+ L +Y E+ V +G +D++++ KN+E+L +F++
Sbjct: 61 IGLNVQAIIGIKTQLGKQETIATKLNEYPEVRFVGAFSGRHDLILQAYFKNNEDLVNFVN 120
Query: 123 -VIGSIPGVEGTHTMIVLKTHKET 145
+ I G+ I LK +K++
Sbjct: 121 KELSKIDGILAADVSIELKQYKDS 144
>emb|CAB51578.1| (AJ242964) TinR protein [Salmonella enterica]
Length = 151
Score = 76.5 bits (185), Expect = 1e-13
Identities = 43/151 (28%), Positives = 83/151 (54%), Gaps = 1/151 (0%)
Query: 1 MRVSLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNP 60
M V LD+ D+ ++K +QKD L +++ GL + +R+KKL++ GVI A+++
Sbjct: 1 MTVYLDDKDKELLKEIQKDCAQTLWQLAYKVGLTPTPCFKRLKKLKDRGVIIGQFALLDK 60
Query: 61 EALGYSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSF 120
E LG S+ FI+I + +YA ++ + E++ Y +G ++ ++ + + SF
Sbjct: 61 EKLGLSLNVFIMINISEEQYASISEKIKSMPEVIAFYRISGSFNYLMHTVFTDMNDYYSF 120
Query: 121 LD-VIGSIPGVEGTHTMIVLKTHKETTELPI 150
+ +I + + G+ + VL+ KET EL +
Sbjct: 121 YEKIILTNSSISGSASSFVLEQIKETNELSV 151
>pir||T35442 transcription regulator - Streptomyces coelicolor
>gi|3319730|emb|CAA19896.1| (AL031035) transcriptional
regulatoty protein [Streptomyces coelicolor A3(2)]
Length = 166
Score = 76.1 bits (184), Expect = 2e-13
Identities = 43/142 (30%), Positives = 79/142 (55%), Gaps = 3/142 (2%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
LD + II+ LQ+DG+ P I K GL+E+ + +R++KL + GV+ + A+ +P +G
Sbjct: 21 LDAVSLAIIEQLQEDGRRPYAAIGKAVGLSEAAVRQRVQKLLDQGVM-QIVAVTDPLTVG 79
Query: 65 YSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFLD-V 123
+ A + + V+ G VA L E V T G +D++V++ ++ + L ++
Sbjct: 80 FRRQAMVGVNVE-GDVESVAEALSAMSECEYVVMTAGSFDLMVEVVCEDDDHLLEVINRR 138
Query: 124 IGSIPGVEGTHTMIVLKTHKET 145
I ++PGV T + + +K K+T
Sbjct: 139 IRAVPGVRSTESFVYMKLKKQT 160
>gi|11499214 leucine responsive regulatory protein (lrp) [Archaeoglobus
fulgidus] >gi|7429083|pir||E69452 leucine responsive
regulatory protein (lrp) homolog - Archaeoglobus
fulgidus >gi|2648930|gb|AAB89621.1| (AE000990) leucine
responsive regulatory protein (lrp) [Archaeoglobus
fulgidus]
Length = 163
Score = 76.1 bits (184), Expect = 2e-13
Identities = 44/145 (30%), Positives = 83/145 (56%), Gaps = 5/145 (3%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
++ ++ ++K+L+++ + EI+++ L + E IKK + GVI K+ AIV+ E L
Sbjct: 1 MESVELEVLKLLEENARMSEEEIAEVLALPVDRVKEIIKKFEDDGVILKYKAIVDWEKLQ 60
Query: 65 YSML-AFILIKVKAGK---YAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSF 120
+ A I +KV + Y ++A + K+ E+ V +G+YD V ++ K+ +++ F
Sbjct: 61 EDFVYALINVKVSLTREKGYDDIAKRIAKFSEVHAVRLVSGEYDFQVVVKGKSLKDIAFF 120
Query: 121 L-DVIGSIPGVEGTHTMIVLKTHKE 144
+ + I +IP V T T VL+T+KE
Sbjct: 121 VAEKISTIPEVRDTFTHFVLRTYKE 145
>dbj|BAB04587.1| (AP001510) transcriptional regulator [Bacillus halodurans]
Length = 149
Score = 75.7 bits (183), Expect = 2e-13
Identities = 38/149 (25%), Positives = 84/149 (55%), Gaps = 1/149 (0%)
Query: 3 VSLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEA 62
+ +D D++I+++L ++G+ +I+K GL+ I ERI +L+E+GVI KF+ ++N +
Sbjct: 1 MKIDATDQKILELLTENGRMSYVDIAKELGLSRVAIRERIHQLKEAGVIEKFSVVINSDK 60
Query: 63 LGYSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFL- 121
+G + AF + + +VA L + ++ Y+ TG + + + ++ ++L F+
Sbjct: 61 VGKKVSAFFEVDCEPTSLVKVAETLAENPKVASCYQMTGPSTLHMHVLVEDFDQLEYFIN 120
Query: 122 DVIGSIPGVEGTHTMIVLKTHKETTELPI 150
+ + ++ G+ + I+L+ K T L +
Sbjct: 121 EELYALQGITRVESHILLRRFKSRTGLKL 149
>sp|P42179|BKDR_PSEPU BKD OPERON TRANSCRIPTIONAL REGULATOR >gi|790513|gb|AAA65613.1|
(M57613) BkdR [Pseudomonas putida]
Length = 161
Score = 74.9 bits (181), Expect = 4e-13
Identities = 44/153 (28%), Positives = 80/153 (51%), Gaps = 11/153 (7%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
LD D I+ LQ++ + E+++ L+ + R++ + E GVIR+ +++PEALG
Sbjct: 4 LDRTDIGILNSLQENARITNAELARSVNLSPTPCFNRVRAMEELGVIRQQVTLLSPEALG 63
Query: 65 YSMLAFILIKVKAGKYAEVASNLVKYE-------EIMEVYETTGDYDMVVKIRTKNSEEL 117
+ FI + ++ +V +L ++E E+ME Y TGD D ++++ + + L
Sbjct: 64 LDVNVFIHVSLE----KQVEQSLHRFEEEIAERPEVMECYLMTGDPDYLLRVLLPSIQAL 119
Query: 118 NSFLDVIGSIPGVEGTHTMIVLKTHKETTELPI 150
FLD + +PGV + LK + T LP+
Sbjct: 120 ERFLDYLTRLPGVANIRSSFALKQVRYKTALPL 152
>gb|AAG20239.1| (AE005099) transcription regulator; Trh4 [Halobacterium sp. NRC-1]
Length = 154
Score = 74.9 bits (181), Expect = 4e-13
Identities = 34/148 (22%), Positives = 81/148 (53%)
Query: 3 VSLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEA 62
++ + +D +++ L DG+A LR ++ ++ +T+ ++ L + G + +T +V+ E
Sbjct: 1 MTYENLDVKLVNELLGDGRASLRSLADDLDVSVTTVSNHLQTLEDEGAVNGYTPVVDYER 60
Query: 63 LGYSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFLD 122
LGY + A + +KV E+ L +++++ VYE TGDYD++ + +++++N+ +
Sbjct: 61 LGYDVTAILQLKVDGTALPEITGTLRGHKQMVSVYEITGDYDVLAIGKFTDTDDMNTLIK 120
Query: 123 VIGSIPGVEGTHTMIVLKTHKETTELPI 150
+ + + + T +VL E + +
Sbjct: 121 ELLADADINESSTSVVLNAAAENEQFEL 148
>pir||B71223 hypothetical protein PH0045 - Pyrococcus horikoshii
>gi|3256430|dbj|BAA29113.1| (AP000001) 155aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 155
Score = 74.5 bits (180), Expect = 5e-13
Identities = 39/120 (32%), Positives = 71/120 (58%), Gaps = 3/120 (2%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
+DEID I++ L+K+ + L E+ + GL S + RI+KL + GVI+ ++A+V+P G
Sbjct: 4 IDEIDEVIVRELRKNSRITLTELGRKVGLTASAVKNRIEKLEKLGVIKGYSAVVDPSFFG 63
Query: 65 YSMLAFI---LIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFL 121
+ A I LI + + + ++K I +VY+ TG++ +V++ ++ E LN+FL
Sbjct: 64 EFLTAVIEIELIDPDSPDLPRILTPILKMRNISDVYKKTGEFHLVIRGTFRDVESLNTFL 123
>emb|CAC11402.1| (AL445063) leucine-responsive-regulatory protein related protein
[Thermoplasma acidophilum]
Length = 177
Score = 73.7 bits (178), Expect = 9e-13
Identities = 39/140 (27%), Positives = 78/140 (54%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
+DE+D++II L+ + + EI+K +E+T+ RI +L +I F+A+V+ +A+
Sbjct: 32 VDELDKQIICFLRYNARISNAEIAKALNTSEATVRRRINELVRKKIIIGFSALVDLQAVE 91
Query: 65 YSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFLDVI 124
S+ A+I+I V K +VA+++ ++ +Y G ++ + N E + +F I
Sbjct: 92 NSIKAYIIIDVDPNKMDDVANSITDNINVLSLYRRRGKNQLIAETLFLNLEAIENFESQI 151
Query: 125 GSIPGVEGTHTMIVLKTHKE 144
+ GV+ TMI+ K +++
Sbjct: 152 SKMSGVKNFETMIISKAYRK 171
>pir||C75191 transcription regulatory protein or leucine-responsive-regulatory
protein PAB2312 - Pyrococcus abyssi (strain Orsay)
>gi|5457487|emb|CAB48978.1| (AJ248283) TRANSCRIPTIONAL
REGULATORY PROTEIN or LEUCINE-RESPONSIVE-REGULATORY
PROTEIN [Pyrococcus abyssi]
Length = 155
Score = 73.0 bits (176), Expect = 2e-12
Identities = 38/120 (31%), Positives = 71/120 (58%), Gaps = 3/120 (2%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
+DEID I++ L+K+ + L E+ K GL S + RI+KL + GVI+ ++A+V+ G
Sbjct: 4 IDEIDEIIVRELRKNSRITLTELGKKVGLTASAVKNRIEKLEKLGVIKGYSAVVDTSFFG 63
Query: 65 YSMLAFI---LIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFL 121
+ A I L+ +A A+V +++ I +VY+ +G++ + ++ ++ + LNSFL
Sbjct: 64 EFLTAIIEVELVDPEAPDLAKVLQPILRMRNISDVYKKSGEFQLAIRGTFRDVDSLNSFL 123
>dbj|BAA20552.1| (D89015) Lrp-family transcriptional regulators [Pseudomonas putida]
Length = 159
Score = 72.6 bits (175), Expect = 2e-12
Identities = 44/155 (28%), Positives = 81/155 (51%), Gaps = 6/155 (3%)
Query: 1 MRVSLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNP 60
M ++D DR ++ LQ + + + E++ L S R+K L ESG I + AI++P
Sbjct: 1 MPSAIDRTDRALLAALQDNARLTVAELADSVALTTSPCWRRVKLLEESGYITGYQAILSP 60
Query: 61 EALGYSMLAFILIKVKAGKYAEVA----SNLVKYEEIMEVYETTGDYDMVVKIRTKNSEE 116
+ALG+ + AF+ I + + E+A L+ EI+ + +G YD +++I ++ E
Sbjct: 61 KALGFGVTAFVSIMMDSHS-KEMARAFEQRLMDIPEIVACHNISGRYDFLLEILARDLES 119
Query: 117 LNSFL-DVIGSIPGVEGTHTMIVLKTHKETTELPI 150
F +V+ +PGV+ ++ K KE +P+
Sbjct: 120 FGEFTREVLQRLPGVKEIYSSFSFKAVKEKRVIPV 154
>pir||E70068 transcription regulator Lrp/AsnC family homolog ywrC - Bacillus
subtilis >gi|1929330|emb|CAB07798.1| (Z93767) similar to
leucine regulatory protein, Lrp and AsnC protein that
regulates expression of asnA gene which encodes
asparagine synthetase A [Bacillus subtilis]
>gi|2636136|emb|CAB15628.1| (Z99122) similar to
transcriptional regulator (Lrp/AsnC family) [Bacillus
subtilis]
Length = 158
Score = 72.2 bits (174), Expect = 3e-12
Identities = 41/140 (29%), Positives = 73/140 (51%), Gaps = 1/140 (0%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
LDE D++I+ IL ++G+ ++ K L+ + RI +L E+GVI KFTA++NP +G
Sbjct: 12 LDETDKQILTILHEEGRISYTDLGKRVDLSRVAVQARINQLIEAGVIEKFTAVINPAKIG 71
Query: 65 YSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFLDV- 123
+ F ++V+ EVA L + + +Y TG + + N +E+ FL
Sbjct: 72 IHVSVFFNVEVEPQFLEEVALKLEEEPAVTSLYHMTGPSKLHMHGIFTNDQEMEEFLTKR 131
Query: 124 IGSIPGVEGTHTMIVLKTHK 143
+ + GV +++K +K
Sbjct: 132 LYPLRGVVSVDCQMLIKRYK 151
>emb|CAB76880.1| (AL159139) putative asnC-family regulatory protein [Streptomyces
coelicolor A3(2)]
Length = 150
Score = 72.2 bits (174), Expect = 3e-12
Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 1/136 (0%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
L+++D RI+ L +D + +I + GL+ + R+ +LR +G I FT V+P ALG
Sbjct: 2 LNDLDERIVHALAEDARRSYADIGQSVGLSAPAVKRRVDRLRATGAITGFTVRVDPAALG 61
Query: 65 YSMLAFILIKVKAGKYAE-VASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFLDV 123
+ F+ I + E + L +Y+E++ TGD D V ++ + L+
Sbjct: 62 WETEGFVEIFCRRNTSPETIQRGLERYQEVVAASTVTGDADAVAQVFASDMRHFERVLER 121
Query: 124 IGSIPGVEGTHTMIVL 139
I P VE T +++VL
Sbjct: 122 IAGEPFVERTKSVLVL 137
>pir||T36372 probable asnC-family transcription regulator - Streptomyces
coelicolor >gi|3980226|emb|CAA10328.1| (AJ131213)
putative transcriptional regulator [Streptomyces
coelicolor A3(2)] >gi|4585593|emb|CAB40861.1| (AL049628)
putative AsnC-family transcriptional regulator
[Streptomyces coelicolor A3(2)]
Length = 150
Score = 71.8 bits (173), Expect = 3e-12
Identities = 44/150 (29%), Positives = 77/150 (51%), Gaps = 4/150 (2%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
+D++DR+I+ LQKDG+ L E+++ L+ S H R++ L SG I + A +N ALG
Sbjct: 1 MDDVDRQILAELQKDGRLTLTELAERVRLSVSPCHRRLRALERSGAITGYHAALNAPALG 60
Query: 65 YSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETT---GDYDMVVKIRTKNSEELNSFL 121
A + + ++ VA+ EI V + GD D ++++ T++ E
Sbjct: 61 LGFEALVFVTMRYEDRQTVAAFEAAVTEIPHVLQAQRLFGDPDYLLRVVTRDLEAYRRLY 120
Query: 122 DV-IGSIPGVEGTHTMIVLKTHKETTELPI 150
D + S+PGV+ + +V+ E LP+
Sbjct: 121 DERLASLPGVQRLSSTLVMANLVEARPLPL 150
>emb|CAC01503.1| (AL391017) putative AsnC-family regulatory protein [Streptomyces
coelicolor A3(2)]
Length = 167
Score = 71.8 bits (173), Expect = 3e-12
Identities = 40/137 (29%), Positives = 72/137 (52%), Gaps = 1/137 (0%)
Query: 4 SLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEAL 63
S DE+DR+I+ L ++ + EI GL+ + + R+ +LRE+ VI F+A V P AL
Sbjct: 7 SFDELDRKIVTALMENARTSFAEIGAEIGLSSTAVKRRVDRLRETDVITGFSATVRPSAL 66
Query: 64 GYSMLAFILIKVKAGKYAEVASNLVK-YEEIMEVYETTGDYDMVVKIRTKNSEELNSFLD 122
G+ A++ + + + +V+ Y EI TG D ++ +R ++ E L+
Sbjct: 67 GWRTEAYVEVYCEGAAPPRRLAEVVRGYPEITAAMTVTGGADALLHVRARDVEHFEEVLE 126
Query: 123 VIGSIPGVEGTHTMIVL 139
I + P + T +++VL
Sbjct: 127 RIRAEPFIRKTISVMVL 143
>pir||A75193 probable transcription regulator PAB2299 - Pyrococcus abyssi
(strain Orsay) >gi|5457501|emb|CAB48992.1| (AJ248283)
hypothetical TRANSCRIPTIONAL REGULATOR [Pyrococcus
abyssi]
Length = 148
Score = 70.2 bits (169), Expect = 1e-11
Identities = 42/133 (31%), Positives = 78/133 (58%), Gaps = 7/133 (5%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
LD++D +++KIL ++ + RE++++ I RI KL++ GVI+KFT I + + LG
Sbjct: 4 LDKVDIQLVKILSQNSRLTYRELAELMNTTRQRIARRITKLKKLGVIKKFTIIPDLDKLG 63
Query: 65 YSMLAFILIKVKAGKYAE-VASNLVKYEEIMEVYETTGDYDMVVK-IRTKNSEE----LN 118
Y M AF+L+K++ + + S + E + E+ + G Y+++V+ + K+ +E +N
Sbjct: 64 Y-MYAFVLVKLRVPSEVDAMISEISNVEYVKEIEKGVGRYNLIVRLLLPKDLKEAEGIIN 122
Query: 119 SFLDVIGSIPGVE 131
FL I + VE
Sbjct: 123 EFLQKIKNAESVE 135
>pir||T35606 probable Asn-C family transcription regulator - Streptomyces
coelicolor >gi|5139583|emb|CAB45601.1| (AL079356)
putative Asn-C family transcriptional regulator
[Streptomyces coelicolor]
Length = 164
Score = 69.9 bits (168), Expect = 1e-11
Identities = 38/138 (27%), Positives = 76/138 (54%)
Query: 2 RVSLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPE 61
R LD++D R++++L++ + L EI++ G+A T+ R+ +L SGV+ + ++
Sbjct: 3 RQGLDQLDGRMLRLLRERPREGLLEIARRLGVARGTLQARLDRLTGSGVVTGYGPDMDVA 62
Query: 62 ALGYSMLAFILIKVKAGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFL 121
ALG+ + AF +V +A+ L +I+E + TG D+ +I +++ + +
Sbjct: 63 ALGHVVQAFTTFEVDQPAREAIAARLRAVPQILEAHVVTGPGDIWCRIAGTSNQHVQEVI 122
Query: 122 DVIGSIPGVEGTHTMIVL 139
D + +PGV + T+I L
Sbjct: 123 DQVLEVPGVRRSTTVIAL 140
>pir||B71225 hypothetical protein PH0061 - Pyrococcus horikoshii
>gi|3256446|dbj|BAA29129.1| (AP000001) 151aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 151
Score = 68.7 bits (165), Expect = 3e-11
Identities = 46/133 (34%), Positives = 74/133 (55%), Gaps = 7/133 (5%)
Query: 5 LDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALG 64
LD +D +++KIL ++ + RE++ I I RI KL++ G+IRKFT I + + LG
Sbjct: 7 LDRVDMQLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKFTIIPDIDKLG 66
Query: 65 YSMLAFILIKVKAGKYAE-VASNLVKYEEIMEVYETTGDYDMVVKI----RTKNSEEL-N 118
Y M A +LIK K A+ V S + E + V + G Y+++V++ K++E L +
Sbjct: 67 Y-MYAIVLIKSKVPSDADKVISEISDIEYVKSVEKGVGRYNIIVRLLLPKDIKDAENLIS 125
Query: 119 SFLDVIGSIPGVE 131
FL I + VE
Sbjct: 126 EFLQRIKNAENVE 138
>pir||H75071 transcription regulatory protein, asnc family PAB0652 - Pyrococcus
abyssi (strain Orsay) >gi|5458389|emb|CAB49877.1|
(AJ248286) transcriptional regulatory protein, AsnC
family [Pyrococcus abyssi]
Length = 162
Score = 67.9 bits (163), Expect = 5e-11
Identities = 48/134 (35%), Positives = 76/134 (55%), Gaps = 11/134 (8%)
Query: 4 SLDEIDRRIIKILQKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEAL 63
SLD++DR I+K+L+KD + + EIS EST+H RIKKL+E G+I K+T IV E +
Sbjct: 5 SLDDLDRAILKLLKKDARLTIAEISNQLKKPESTVHFRIKKLQERGIIEKYTIIVG-EPI 63
Query: 64 GYSMLAFILIKVK-------AGKYAE-VASNLVKYEEIMEVYETTGDYDMVVKIRTKNSE 115
LA +++++ +Y E V L + E++ V + +G +V + ++ E
Sbjct: 64 KPRKLALVVLEIDMPIIEDFLERYIEYVTKTLSGFSEVLFVAK-SGKEKIVALVGGESEE 122
Query: 116 ELNSFL-DVIGSIP 128
L F+ D I SIP
Sbjct: 123 SLLKFIEDNIESIP 136
>emb|CAB92114.1| (AL356334) putative asnC-family transcriptional regulator
[Streptomyces coelicolor A3(2)]
Length = 167
Score = 67.1 bits (161), Expect = 9e-11
Identities = 41/136 (30%), Positives = 72/136 (52%), Gaps = 3/136 (2%)
Query: 17 QKDGKAPLREISKITGLAESTIHERIKKLRESGVIRKFTAIVNPEALGYSMLAFILIKVK 76
+++G+A E+ ++ GL+ ++ +RI +L +GVI + A V+ +LG + A I + +
Sbjct: 28 EENGRASYAELGRLVGLSGPSVTDRINRLEAAGVITGYRATVDSASLGLGVTALIGVSLS 87
Query: 77 -AGKYAEVASNLVKYEEIMEVYETTGDYDMVVKIRTKNSEELNSFLDVIGSIPGVEGTHT 135
A + +VA L + EI + + GD ++K+R + + L S + + GV T T
Sbjct: 88 DAADHEDVAQRLKELREIEDCWFIAGDDSYMLKVRAADVDGLESIIRRLSGTKGVSRTRT 147
Query: 136 MIVLKTHKETT--ELP 149
IVL T E ELP
Sbjct: 148 TIVLSTKWENRVGELP 163
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.316 0.136 0.358
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48920866
Number of Sequences: 2977
Number of extensions: 1739139
Number of successful extensions: 6366
Number of sequences better than 1.0e-10: 80
Number of HSP's better than 0.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 6283
Number of HSP's gapped (non-prelim): 80
length of query: 151
length of database: 189,106,746
effective HSP length: 59
effective length of query: 92
effective length of database: 153,796,013
effective search space: 14149233196
effective search space used: 14149233196
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 161 (67.1 bits)