BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1939 (PAB1939) DE:Hypothetical protein
(467 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75105 hypothetical protein PAB1939 - Pyrococcus abyssi (st... 890 0.0
pir||F71028 hypothetical protein PH1520 - Pyrococcus horikoshii ... 508 e-143
pir||H71028 hypothetical protein PH1522 - Pyrococcus horikoshii ... 166 4e-40
pir||G75105 hypothetical protein PAB1940 - Pyrococcus abyssi (st... 157 3e-37
>pir||H75105 hypothetical protein PAB1939 - Pyrococcus abyssi (strain Orsay)
>gi|5458072|emb|CAB49561.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 467
Score = 890 bits (2276), Expect = 0.0
Identities = 467/467 (100%), Positives = 467/467 (100%)
Query: 1 MVEGFSIVNVEQIRDDLRKWKVREVLESLDIAKDKVEILKKLLTDKNETVVGNTLFVIER 60
MVEGFSIVNVEQIRDDLRKWKVREVLESLDIAKDKVEILKKLLTDKNETVVGNTLFVIER
Sbjct: 1 MVEGFSIVNVEQIRDDLRKWKVREVLESLDIAKDKVEILKKLLTDKNETVVGNTLFVIER 60
Query: 61 LIKDGKLDSEQTEELLDTIIRLSKSSNDKIALNSLKCLRTILDNVQLSNQGYDKVINTLS 120
LIKDGKLDSEQTEELLDTIIRLSKSSNDKIALNSLKCLRTILDNVQLSNQGYDKVINTLS
Sbjct: 61 LIKDGKLDSEQTEELLDTIIRLSKSSNDKIALNSLKCLRTILDNVQLSNQGYDKVINTLS 120
Query: 121 GIITSRRGILREYAAEELGILGAKITSFIKRIVEFLVSLIKEGKDREVKGAALSALTEIA 180
GIITSRRGILREYAAEELGILGAKITSFIKRIVEFLVSLIKEGKDREVKGAALSALTEIA
Sbjct: 121 GIITSRRGILREYAAEELGILGAKITSFIKRIVEFLVSLIKEGKDREVKGAALSALTEIA 180
Query: 181 SRSDNVEVIEDITREIREFIKTEQDAELKKKAISSLEIIFSKKRDKLTPKTMSEIKEEVP 240
SRSDNVEVIEDITREIREFIKTEQDAELKKKAISSLEIIFSKKRDKLTPKTMSEIKEEVP
Sbjct: 181 SRSDNVEVIEDITREIREFIKTEQDAELKKKAISSLEIIFSKKRDKLTPKTMSEIKEEVP 240
Query: 241 EIDKSTEVPYEENVDIEKLFEMEKHEVVATLAKENEGILKKVVEMLSSKEYIRRADALWV 300
EIDKSTEVPYEENVDIEKLFEMEKHEVVATLAKENEGILKKVVEMLSSKEYIRRADALWV
Sbjct: 241 EIDKSTEVPYEENVDIEKLFEMEKHEVVATLAKENEGILKKVVEMLSSKEYIRRADALWV 300
Query: 301 IARIIKFLDPNMARYVVKNLAGLVKDRNPWIRNTAIKAIAEAYVLYPEVRMDVIPLLDAL 360
IARIIKFLDPNMARYVVKNLAGLVKDRNPWIRNTAIKAIAEAYVLYPEVRMDVIPLLDAL
Sbjct: 301 IARIIKFLDPNMARYVVKNLAGLVKDRNPWIRNTAIKAIAEAYVLYPEVRMDVIPLLDAL 360
Query: 361 LRSNNKEDVELALNIIKEILSYSHDEELFRATLILTIKKLDDKSIRPVILGFYALVADNF 420
LRSNNKEDVELALNIIKEILSYSHDEELFRATLILTIKKLDDKSIRPVILGFYALVADNF
Sbjct: 361 LRSNNKEDVELALNIIKEILSYSHDEELFRATLILTIKKLDDKSIRPVILGFYALVADNF 420
Query: 421 LNVDTELIRVLIGKLNEIYKDLTQDEKKIASSLIDLLTTILKGRERR 467
LNVDTELIRVLIGKLNEIYKDLTQDEKKIASSLIDLLTTILKGRERR
Sbjct: 421 LNVDTELIRVLIGKLNEIYKDLTQDEKKIASSLIDLLTTILKGRERR 467
>pir||F71028 hypothetical protein PH1520 - Pyrococcus horikoshii
>gi|3257947|dbj|BAA30630.1| (AP000006) 465aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 465
Score = 508 bits (1293), Expect = e-143
Identities = 249/464 (53%), Positives = 364/464 (77%), Gaps = 5/464 (1%)
Query: 1 MVEGFSIVNVEQIRDDLRKWKVREVLESLDIAKDKVEILKKLLTDKNETVVGNTLFVIER 60
M FSI+N+ Q+R+DL++WKVREV E+L ++ +KV+IL+ LL DK+ VV NTLF+IE+
Sbjct: 1 MGSSFSIINLTQLREDLKRWKVREVSEALQLSPEKVDILRPLLHDKDNIVVENTLFIIEK 60
Query: 61 LIKDGKLDSEQTEELLDTIIRLSKSSNDKIALNSLKCLRTILDNVQLSNQGYDKVINTLS 120
LIK L ++ +ELLD II L++SSN+KIAL +KCLRTIL++V LS+ Y+K+I TL+
Sbjct: 61 LIKRKALKEDEVDELLDDIITLTRSSNEKIALRGMKCLRTILEDVNLSDDSYNKIIATLT 120
Query: 121 GIITSRRGILREYAAEELGILGAKITSFIKRIVEFLVSLIKEGKDREVKGAALSALTEIA 180
+IT+++GILREYAAEELGI+GAKIT+ IK+++ FLVSL++E KDREVK AAL+ALTEIA
Sbjct: 121 NVITTKKGILREYAAEELGIIGAKITTLIKKVINFLVSLVRESKDREVKEAALTALTEIA 180
Query: 181 SRSDNVEVIEDITREIREFIKTEQDAELKKKAISSLEIIFSKKRDKLTPKTMSEIKEEVP 240
SRS + VIE I +EIR+ +K EQD+E++KKA+SSLEII +KK+D+++ +T+S+I+ EVP
Sbjct: 181 SRSKDKNVIEGIAKEIRDVLKREQDSEVRKKALSSLEIILTKKKDEISSETLSDIQSEVP 240
Query: 241 EI--DKSTEVPYEENVDIEKLFEMEKHEVVATLAKENEGILKKVVEMLSSKEYIRRADAL 298
E+ K+ E+ + DIEKLF +EKHE+VA +AKENE + +++MLSS++Y++RADAL
Sbjct: 241 EVLPTKNHEISIQ---DIEKLFALEKHEIVAEIAKENEDVQNAIIDMLSSEDYLKRADAL 297
Query: 299 WVIARIIKFLDPNMARYVVKNLAGLVKDRNPWIRNTAIKAIAEAYVLYPEVRMDVIPLLD 358
WVI RI++F+ + L LVKD+NPWI N+AIK +AE Y+L+PEVR D++ LD
Sbjct: 298 WVIYRILRFIPSEKLGNIFSKLKTLVKDKNPWIHNSAIKTLAELYLLFPEVRRDILTFLD 357
Query: 359 ALLRSNNKEDVELALNIIKEILSYSHDEELFRATLILTIKKLDDKSIRPVILGFYALVAD 418
+LL+S +E+V++ L II+E+L+Y++D E+F+ATL++T+++L + IR VIL FYA A+
Sbjct: 358 SLLKSEEEEEVKIGLEIIRELLAYTNDVEIFKATLLITLRRLKENKIRLVILRFYASTAE 417
Query: 419 NFLNVDTELIRVLIGKLNEIYKDLTQDEKKIASSLIDLLTTILK 462
F ++ ELI I +L++IYK +++E++I SL+DLL TIL+
Sbjct: 418 YFTKIERELIEATIKELDQIYKMSSKEERRIILSLMDLLATILE 461
>pir||H71028 hypothetical protein PH1522 - Pyrococcus horikoshii
>gi|3257949|dbj|BAA30632.1| (AP000006) 455aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 455
Score = 166 bits (417), Expect = 4e-40
Identities = 111/412 (26%), Positives = 211/412 (50%), Gaps = 25/412 (6%)
Query: 11 EQIRDDLRKWKVREVLESLDIAKD-KVEILKKLLTDKNETVVGNTLFVIERLIKDGKLDS 69
E+ ++L+ W+VR+ L+ ++ ++ ++ ILKK L +K+ + TL++I++L +L
Sbjct: 5 EEYMENLKGWRVRKALQIVEEDRENRISILKKALQEKDPLIKKGTLYIIKKLAMKKELGI 64
Query: 70 EQTEELLDTIIRLSKSSNDKIALNSLKCLRTILDNVQLSNQGYDKVINTLSGIITSRRGI 129
++ +E++ +IRL ++ + L +++ + I+ ++L ++ L GI+ ++
Sbjct: 65 DEVKEVIPDLIRLLDDKDETVVLQAVETINAIVTFMELPEDISTRLSEILIGIVENKPEP 124
Query: 130 LREYAAEELGILGAKITSFIKRIVEFLVSLIKEGKDREVKGAALSALTEIASRSDNVEVI 189
+ EYAAE + LGAKI + I ++ +++K GK + K +AL L EI R+ + E++
Sbjct: 125 INEYAAEGVATLGAKIIRVARMIFSWIKNILK-GKSEKKKVSALRVLKEIVVRTKDPEIM 183
Query: 190 EDITREIREFIKTEQDAELKKKAISSLEIIFSKKR-------DKLTPKT-----MSEIKE 237
E+ + + E ++K A+ +E+ +K +K + K S K+
Sbjct: 184 EEAFNLALDVLNDENPV-VRKAALGIVEVAIDRKEYLSRESLEKASKKLDEMGEASSTKD 242
Query: 238 EVPEIDKSTEVPYEENVDIEK----------LFEMEKHEVVATLAKENEGILKKVVEMLS 287
++ EI K E+ +D+EK +FE E+H V LAK + +L+ VV++
Sbjct: 243 KIDEILKGEFKKAEQPIDVEKKDYTIEIIKEMFEREQHLAVLELAKSDYKVLQLVVKLFI 302
Query: 288 SKEYIRRADALWVIARIIKFLDPNMARYVVKNLAGLVKDRNPWIRNTAIKAIAEAYVLYP 347
S + + + DALWVI+ + +L + A ++ L L+ NPWIR+T+ K +A YP
Sbjct: 303 SGDLLTKLDALWVISNAVDYLKIDDATKIIPQLKQLLTHYNPWIRSTSAKVLAGLATNYP 362
Query: 348 EVRMDVIPLLDALLRSNNKEDVELALNIIKEILSYSHDEELFRATLILTIKK 399
+ D+I LL ++ V+ L + LS + R L IKK
Sbjct: 363 SLMDDLIETALNLLEEKDENSVKAGLELADAFLSRLKNLGFLREVLKRLIKK 414
>pir||G75105 hypothetical protein PAB1940 - Pyrococcus abyssi (strain Orsay)
>gi|5458071|emb|CAB49560.1| (AJ248285) hypothetical
protein [Pyrococcus abyssi]
Length = 454
Score = 157 bits (392), Expect = 3e-37
Identities = 103/411 (25%), Positives = 215/411 (52%), Gaps = 24/411 (5%)
Query: 11 EQIRDDLRKWKVREVLESLDIAKD-KVEILKKLLTDKNETVVGNTLFVIERLIKDGKLDS 69
++ D+L+ W++R+ LE + K+ K+E++K+ L +K+ V TL++I++L +L +
Sbjct: 5 DEYLDNLKGWRIRKALEIVREKKEEKLEVIKRALQEKDPLVKKGTLYIIKKLAMKKELST 64
Query: 70 EQTEELLDTIIRLSKSSNDKIALNSLKCLRTILDNVQLSNQGYDKVINTLSGIITSRRGI 129
+ EL+ ++IRL ++ + L +++ + I++ + L ++ + L GI+ ++
Sbjct: 65 NEIRELMPSLIRLLDDKDESVVLQTVETINAIINFMDLPEDLSSELSDVLIGIVENKPEP 124
Query: 130 LREYAAEELGILGAKITSFIKRIVEFLVSLIKEGKDREVKGAALSALTEIASRSDNVEVI 189
+ EYAAE + LGAKI ++I ++ ++ +GK + K +AL L EI +R+ N +++
Sbjct: 125 INEYAAEGVATLGAKIIMIARKIFSWIRGIL-QGKSTKKKVSALRVLREIVTRTKNEKIM 183
Query: 190 EDITREIREFIKTEQDAELKKKAISSLEIIFSKK----RDKLTPKTM--------SEIKE 237
E+ + + ++D ++ A+ +E+ ++ R+ L + E KE
Sbjct: 184 EEAFNLALD-VLNDEDPVVRSTALKIIEVAIDRREFLSRESLEKASAMLGSSSIGKETKE 242
Query: 238 EVPEIDKSTE---VPYEENVD------IEKLFEMEKHEVVATLAKENEGILKKVVEMLSS 288
++ EI + E V E +V I+++FE E+H V LAK + +L+ V+ + S
Sbjct: 243 KIDEILQGREEKKVKTEVSVKDYSVEIIKEMFEREQHMAVLELAKSDYKVLQLVIRIFLS 302
Query: 289 KEYIRRADALWVIARIIKFLDPNMARYVVKNLAGLVKDRNPWIRNTAIKAIAEAYVLYPE 348
++ + + DALWVI+ ++ + A ++ L + NPW+R+T+ K +A+ + Y
Sbjct: 303 EDLLTKLDALWVISNATSYIKIDDAMKIIPQLEEFLLHYNPWVRSTSAKVLADLALEYSS 362
Query: 349 VRMDVIPLLDALLRSNNKEDVELALNIIKEILSYSHDEELFRATLILTIKK 399
+ I L+ SN+++ V + + +LS + R + I+K
Sbjct: 363 IMEREISKALELIESNDEKLVIAGIELADALLSRIKNIGFLREVMKRLIRK 413
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.317 0.136 0.357
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148682776
Number of Sequences: 2977
Number of extensions: 6022273
Number of successful extensions: 28730
Number of sequences better than 1.0e-10: 4
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28709
Number of HSP's gapped (non-prelim): 6
length of query: 467
length of database: 189,106,746
effective HSP length: 63
effective length of query: 404
effective length of database: 151,402,065
effective search space: 61166434260
effective search space used: 61166434260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 166 (69.1 bits)