BLASTP 2.0.10 [Aug-26-1999] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PAB1940 (PAB1940) DE:Hypothetical protein (454 letters) Database: ./suso.pep; /banques/blast2/nr.pep 598,487 sequences; 189,106,746 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value pir||G75105 hypothetical protein PAB1940 - Pyrococcus abyssi (st... 863 0.0 pir||H71028 hypothetical protein PH1522 - Pyrococcus horikoshii ... 654 0.0 pir||F71028 hypothetical protein PH1520 - Pyrococcus horikoshii ... 178 1e-43 pir||H75105 hypothetical protein PAB1939 - Pyrococcus abyssi (st... 157 3e-37 >pir||G75105 hypothetical protein PAB1940 - Pyrococcus abyssi (strain Orsay) >gi|5458071|emb|CAB49560.1| (AJ248285) hypothetical protein [Pyrococcus abyssi] Length = 454 Score = 863 bits (2205), Expect = 0.0 Identities = 454/454 (100%), Positives = 454/454 (100%) Query: 1 MSVYDEYLDNLKGWRIRKALEIVREKKEEKLEVIKRALQEKDPLVKKGTLYIIKKLAMKK 60 MSVYDEYLDNLKGWRIRKALEIVREKKEEKLEVIKRALQEKDPLVKKGTLYIIKKLAMKK Sbjct: 1 MSVYDEYLDNLKGWRIRKALEIVREKKEEKLEVIKRALQEKDPLVKKGTLYIIKKLAMKK 60 Query: 61 ELSTNEIRELMPSLIRLLDDKDESVVLQTVETINAIINFMDLPEDLSSELSDVLIGIVEN 120 ELSTNEIRELMPSLIRLLDDKDESVVLQTVETINAIINFMDLPEDLSSELSDVLIGIVEN Sbjct: 61 ELSTNEIRELMPSLIRLLDDKDESVVLQTVETINAIINFMDLPEDLSSELSDVLIGIVEN 120 Query: 121 KPEPINEYAAEGVATLGAKIIMIARKIFSWIRGILQGKSTKKKVSALRVLREIVTRTKNE 180 KPEPINEYAAEGVATLGAKIIMIARKIFSWIRGILQGKSTKKKVSALRVLREIVTRTKNE Sbjct: 121 KPEPINEYAAEGVATLGAKIIMIARKIFSWIRGILQGKSTKKKVSALRVLREIVTRTKNE 180 Query: 181 KIMEEAFNLALDVLNDEDPVVRSTALKIIEVAIDRREFLSRESLEKASAMLGSSSIGKET 240 KIMEEAFNLALDVLNDEDPVVRSTALKIIEVAIDRREFLSRESLEKASAMLGSSSIGKET Sbjct: 181 KIMEEAFNLALDVLNDEDPVVRSTALKIIEVAIDRREFLSRESLEKASAMLGSSSIGKET 240 Query: 241 KEKIDEILQGREEKKVKTEVSVKDYSVEIIKEMFEREQHMAVLELAKSDYKVLQLVIRIF 300 KEKIDEILQGREEKKVKTEVSVKDYSVEIIKEMFEREQHMAVLELAKSDYKVLQLVIRIF Sbjct: 241 KEKIDEILQGREEKKVKTEVSVKDYSVEIIKEMFEREQHMAVLELAKSDYKVLQLVIRIF 300 Query: 301 LSEDLLTKLDALWVISNATSYIKIDDAMKIIPQLEEFLLHYNPWVRSTSAKVLADLALEY 360 LSEDLLTKLDALWVISNATSYIKIDDAMKIIPQLEEFLLHYNPWVRSTSAKVLADLALEY Sbjct: 301 LSEDLLTKLDALWVISNATSYIKIDDAMKIIPQLEEFLLHYNPWVRSTSAKVLADLALEY 360 Query: 361 SSIMEREISKALELIESNDEKLVIAGIELADALLSRIKNIGFLREVMKRLIRKDRLPREA 420 SSIMEREISKALELIESNDEKLVIAGIELADALLSRIKNIGFLREVMKRLIRKDRLPREA Sbjct: 361 SSIMEREISKALELIESNDEKLVIAGIELADALLSRIKNIGFLREVMKRLIRKDRLPREA 420 Query: 421 LDFIKKYESYIEELEPEIKRQISIKLVNSLVGEP 454 LDFIKKYESYIEELEPEIKRQISIKLVNSLVGEP Sbjct: 421 LDFIKKYESYIEELEPEIKRQISIKLVNSLVGEP 454 >pir||H71028 hypothetical protein PH1522 - Pyrococcus horikoshii >gi|3257949|dbj|BAA30632.1| (AP000006) 455aa long hypothetical protein [Pyrococcus horikoshii] Length = 455 Score = 654 bits (1669), Expect = 0.0 Identities = 325/456 (71%), Positives = 394/456 (86%), Gaps = 3/456 (0%) Query: 1 MSVYDEYLDNLKGWRIRKALEIVREKKEEKLEVIKRALQEKDPLVKKGTLYIIKKLAMKK 60 MSVY+EY++NLKGWR+RKAL+IV E +E ++ ++K+ALQEKDPL+KKGTLYIIKKLAMKK Sbjct: 1 MSVYEEYMENLKGWRVRKALQIVEEDRENRISILKKALQEKDPLIKKGTLYIIKKLAMKK 60 Query: 61 ELSTNEIRELMPSLIRLLDDKDESVVLQTVETINAIINFMDLPEDLSSELSDVLIGIVEN 120 EL +E++E++P LIRLLDDKDE+VVLQ VETINAI+ FM+LPED+S+ LS++LIGIVEN Sbjct: 61 ELGIDEVKEVIPDLIRLLDDKDETVVLQAVETINAIVTFMELPEDISTRLSEILIGIVEN 120 Query: 121 KPEPINEYAAEGVATLGAKIIMIARKIFSWIRGILQGKSTKKKVSALRVLREIVTRTKNE 180 KPEPINEYAAEGVATLGAKII +AR IFSWI+ IL+GKS KKKVSALRVL+EIV RTK+ Sbjct: 121 KPEPINEYAAEGVATLGAKIIRVARMIFSWIKNILKGKSEKKKVSALRVLKEIVVRTKDP 180 Query: 181 KIMEEAFNLALDVLNDEDPVVRSTALKIIEVAIDRREFLSRESLEKASAMLGSSSIGKET 240 +IMEEAFNLALDVLNDE+PVVR AL I+EVAIDR+E+LSRESLEKAS L T Sbjct: 181 EIMEEAFNLALDVLNDENPVVRKAALGIVEVAIDRKEYLSRESLEKASKKLDEMGEASST 240 Query: 241 KEKIDEILQGREEKKVKTEVSV--KDYSVEIIKEMFEREQHMAVLELAKSDYKVLQLVIR 298 K+KIDEIL+G E KK + + V KDY++EIIKEMFEREQH+AVLELAKSDYKVLQLV++ Sbjct: 241 KDKIDEILKG-EFKKAEQPIDVEKKDYTIEIIKEMFEREQHLAVLELAKSDYKVLQLVVK 299 Query: 299 IFLSEDLLTKLDALWVISNATSYIKIDDAMKIIPQLEEFLLHYNPWVRSTSAKVLADLAL 358 +F+S DLLTKLDALWVISNA Y+KIDDA KIIPQL++ L HYNPW+RSTSAKVLA LA Sbjct: 300 LFISGDLLTKLDALWVISNAVDYLKIDDATKIIPQLKQLLTHYNPWIRSTSAKVLAGLAT 359 Query: 359 EYSSIMEREISKALELIESNDEKLVIAGIELADALLSRIKNIGFLREVMKRLIRKDRLPR 418 Y S+M+ I AL L+E DE V AG+ELADA LSR+KN+GFLREV+KRLI+KD+LP+ Sbjct: 360 NYPSLMDDLIETALNLLEEKDENSVKAGLELADAFLSRLKNLGFLREVLKRLIKKDKLPK 419 Query: 419 EALDFIKKYESYIEELEPEIKRQISIKLVNSLVGEP 454 EAL+F+KKY YIEELEPEIK+ +S+KL+++ +G+P Sbjct: 420 EALEFMKKYSEYIEELEPEIKKSVSMKLLDTAIGQP 455 >pir||F71028 hypothetical protein PH1520 - Pyrococcus horikoshii >gi|3257947|dbj|BAA30630.1| (AP000006) 465aa long hypothetical protein [Pyrococcus horikoshii] Length = 465 Score = 178 bits (447), Expect = 1e-43 Identities = 113/436 (25%), Positives = 232/436 (52%), Gaps = 30/436 (6%) Query: 9 DNLKGWRIRKALEIVREKKEEKLEVIKRALQEKDPLVKKGTLYIIKKLAMKKELSTNEIR 68 ++LK W++R+ E + + EK+++++ L +KD +V + TL+II+KL +K L +E+ Sbjct: 15 EDLKRWKVREVSEAL-QLSPEKVDILRPLLHDKDNIVVENTLFIIEKLIKRKALKEDEVD 73 Query: 69 ELMPSLIRLLDDKDESVVLQTVETINAIINFMDLPEDLSSELSDVLIGIVENKPEPINEY 128 EL+ +I L +E + L+ ++ + I+ ++L +D +++ L ++ K + EY Sbjct: 74 ELLDDIITLTRSSNEKIALRGMKCLRTILEDVNLSDDSYNKIIATLTNVITTKKGILREY 133 Query: 129 AAEGVATLGAKIIMIARKIFSWIRGIL-QGKSTKKKVSALRVLREIVTRTKNEKIMEEAF 187 AAE + +GAKI + +K+ +++ ++ + K + K +AL L EI +R+K++ ++E Sbjct: 134 AAEELGIIGAKITTLIKKVINFLVSLVRESKDREVKEAALTALTEIASRSKDKNVIEGIA 193 Query: 188 NLALDVL-NDEDPVVRSTALKIIEVAI-DRREFLSRESLEKASAMLGSSSIGKETKEKID 245 DVL ++D VR AL +E+ + +++ +S E+L + + ++ Sbjct: 194 KEIRDVLKREQDSEVRKKALSSLEIILTKKKDEISSETL-------------SDIQSEVP 240 Query: 246 EILQGREEKKVKTEVSVKDYSVEIIKEMFEREQHMAVLELAKSDYKVLQLVIRIFLSEDL 305 E+L + E+S++D I+++F E+H V E+AK + V +I + SED Sbjct: 241 EVLPTKNH-----EISIQD-----IEKLFALEKHEIVAEIAKENEDVQNAIIDMLSSEDY 290 Query: 306 LTKLDALWVISNATSYIKIDDAMKIIPQLEEFLLHYNPWVRSTSAKVLADLALEYSSIME 365 L + DALWVI +I + I +L+ + NPW+ +++ K LA+L L + + Sbjct: 291 LKRADALWVIYRILRFIPSEKLGNIFSKLKTLVKDKNPWIHNSAIKTLAELYLLFPEVRR 350 Query: 366 REISKALELIESNDEKLVIAGIELADALLSRIKNIGFLRE---VMKRLIRKDRLPREALD 422 ++ L++S +E+ V G+E+ LL+ ++ + + R ++++++ L Sbjct: 351 DILTFLDSLLKSEEEEEVKIGLEIIRELLAYTNDVEIFKATLLITLRRLKENKIRLVILR 410 Query: 423 FIKKYESYIEELEPEI 438 F Y ++E E+ Sbjct: 411 FYASTAEYFTKIEREL 426 >pir||H75105 hypothetical protein PAB1939 - Pyrococcus abyssi (strain Orsay) >gi|5458072|emb|CAB49561.1| (AJ248285) hypothetical protein [Pyrococcus abyssi] Length = 467 Score = 157 bits (392), Expect = 3e-37 Identities = 103/411 (25%), Positives = 215/411 (52%), Gaps = 24/411 (5%) Query: 5 DEYLDNLKGWRIRKALEIVREKKEEKLEVIKRALQEKDPLVKKGTLYIIKKLAMKKELST 64 ++ D+L+ W++R+ LE + K+ K+E++K+ L +K+ V TL++I++L +L + Sbjct: 11 EQIRDDLRKWKVREVLESLDIAKD-KVEILKKLLTDKNETVVGNTLFVIERLIKDGKLDS 69 Query: 65 NEIRELMPSLIRLLDDKDESVVLQTVETINAIINFMDLPEDLSSELSDVLIGIVENKPEP 124 + EL+ ++IRL ++ + L +++ + I++ + L ++ + L GI+ ++ Sbjct: 70 EQTEELLDTIIRLSKSSNDKIALNSLKCLRTILDNVQLSNQGYDKVINTLSGIITSRRGI 129 Query: 125 INEYAAEGVATLGAKIIMIARKIFSWIRGIL-QGKSTKKKVSALRVLREIVTRTKNEKIM 183 + EYAAE + LGAKI ++I ++ ++ +GK + K +AL L EI +R+ N +++ Sbjct: 130 LREYAAEELGILGAKITSFIKRIVEFLVSLIKEGKDREVKGAALSALTEIASRSDNVEVI 189 Query: 184 EEAFNLALD-VLNDEDPVVRSTALKIIEVAIDRREFLSRESLEKASAMLGSSSIGKETKE 242 E+ + + ++D ++ A+ +E+ ++ R+ L + E KE Sbjct: 190 EDITREIREFIKTEQDAELKKKAISSLEIIFSKK----RDKLTPKTM--------SEIKE 237 Query: 243 KIDEILQGREEKKVKTEVSVKDYSVEIIKEMFEREQHMAVLELAKSDYKVLQLVIRIFLS 302 ++ EI + E V E +V I+++FE E+H V LAK + +L+ V+ + S Sbjct: 238 EVPEIDKSTE---VPYEENVD------IEKLFEMEKHEVVATLAKENEGILKKVVEMLSS 288 Query: 303 EDLLTKLDALWVISNATSYIKIDDAMKIIPQLEEFLLHYNPWVRSTSAKVLADLALEYSS 362 ++ + + DALWVI+ ++ + A ++ L + NPW+R+T+ K +A+ + Y Sbjct: 289 KEYIRRADALWVIARIIKFLDPNMARYVVKNLAGLVKDRNPWIRNTAIKAIAEAYVLYPE 348 Query: 363 IMEREISKALELIESNDEKLVIAGIELADALLSRIKNIGFLREVMKRLIRK 413 + I L+ SN+++ V + + +LS + R + I+K Sbjct: 349 VRMDVIPLLDALLRSNNKEDVELALNIIKEILSYSHDEELFRATLILTIKK 399 Database: ./suso.pep Posted date: Jul 6, 2001 5:57 PM Number of letters in database: 840,471 Number of sequences in database: 2977 Database: /banques/blast2/nr.pep Posted date: Dec 14, 2000 12:46 PM Number of letters in database: 188,266,275 Number of sequences in database: 595,510 Lambda K H 0.316 0.135 0.352 Gapped Lambda K H 0.270 0.0470 0.230 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 140075546 Number of Sequences: 2977 Number of extensions: 5403228 Number of successful extensions: 27133 Number of sequences better than 1.0e-10: 4 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 27116 Number of HSP's gapped (non-prelim): 5 length of query: 454 length of database: 189,106,746 effective HSP length: 64 effective length of query: 390 effective length of database: 150,803,578 effective search space: 58813395420 effective search space used: 58813395420 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 41 (21.6 bits) S2: 166 (69.1 bits)