BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1940 (PAB1940) DE:Hypothetical protein
         (454 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75105 hypothetical protein PAB1940 - Pyrococcus abyssi (st...   863  0.0
pir||H71028 hypothetical protein PH1522 - Pyrococcus horikoshii ...   654  0.0
pir||F71028 hypothetical protein PH1520 - Pyrococcus horikoshii ...   178  1e-43
pir||H75105 hypothetical protein PAB1939 - Pyrococcus abyssi (st...   157  3e-37

>pir||G75105 hypothetical protein PAB1940 - Pyrococcus abyssi (strain Orsay)
           >gi|5458071|emb|CAB49560.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 454
           
 Score =  863 bits (2205), Expect = 0.0
 Identities = 454/454 (100%), Positives = 454/454 (100%)

Query: 1   MSVYDEYLDNLKGWRIRKALEIVREKKEEKLEVIKRALQEKDPLVKKGTLYIIKKLAMKK 60
           MSVYDEYLDNLKGWRIRKALEIVREKKEEKLEVIKRALQEKDPLVKKGTLYIIKKLAMKK
Sbjct: 1   MSVYDEYLDNLKGWRIRKALEIVREKKEEKLEVIKRALQEKDPLVKKGTLYIIKKLAMKK 60

Query: 61  ELSTNEIRELMPSLIRLLDDKDESVVLQTVETINAIINFMDLPEDLSSELSDVLIGIVEN 120
           ELSTNEIRELMPSLIRLLDDKDESVVLQTVETINAIINFMDLPEDLSSELSDVLIGIVEN
Sbjct: 61  ELSTNEIRELMPSLIRLLDDKDESVVLQTVETINAIINFMDLPEDLSSELSDVLIGIVEN 120

Query: 121 KPEPINEYAAEGVATLGAKIIMIARKIFSWIRGILQGKSTKKKVSALRVLREIVTRTKNE 180
           KPEPINEYAAEGVATLGAKIIMIARKIFSWIRGILQGKSTKKKVSALRVLREIVTRTKNE
Sbjct: 121 KPEPINEYAAEGVATLGAKIIMIARKIFSWIRGILQGKSTKKKVSALRVLREIVTRTKNE 180

Query: 181 KIMEEAFNLALDVLNDEDPVVRSTALKIIEVAIDRREFLSRESLEKASAMLGSSSIGKET 240
           KIMEEAFNLALDVLNDEDPVVRSTALKIIEVAIDRREFLSRESLEKASAMLGSSSIGKET
Sbjct: 181 KIMEEAFNLALDVLNDEDPVVRSTALKIIEVAIDRREFLSRESLEKASAMLGSSSIGKET 240

Query: 241 KEKIDEILQGREEKKVKTEVSVKDYSVEIIKEMFEREQHMAVLELAKSDYKVLQLVIRIF 300
           KEKIDEILQGREEKKVKTEVSVKDYSVEIIKEMFEREQHMAVLELAKSDYKVLQLVIRIF
Sbjct: 241 KEKIDEILQGREEKKVKTEVSVKDYSVEIIKEMFEREQHMAVLELAKSDYKVLQLVIRIF 300

Query: 301 LSEDLLTKLDALWVISNATSYIKIDDAMKIIPQLEEFLLHYNPWVRSTSAKVLADLALEY 360
           LSEDLLTKLDALWVISNATSYIKIDDAMKIIPQLEEFLLHYNPWVRSTSAKVLADLALEY
Sbjct: 301 LSEDLLTKLDALWVISNATSYIKIDDAMKIIPQLEEFLLHYNPWVRSTSAKVLADLALEY 360

Query: 361 SSIMEREISKALELIESNDEKLVIAGIELADALLSRIKNIGFLREVMKRLIRKDRLPREA 420
           SSIMEREISKALELIESNDEKLVIAGIELADALLSRIKNIGFLREVMKRLIRKDRLPREA
Sbjct: 361 SSIMEREISKALELIESNDEKLVIAGIELADALLSRIKNIGFLREVMKRLIRKDRLPREA 420

Query: 421 LDFIKKYESYIEELEPEIKRQISIKLVNSLVGEP 454
           LDFIKKYESYIEELEPEIKRQISIKLVNSLVGEP
Sbjct: 421 LDFIKKYESYIEELEPEIKRQISIKLVNSLVGEP 454


>pir||H71028 hypothetical protein PH1522 - Pyrococcus horikoshii
           >gi|3257949|dbj|BAA30632.1| (AP000006) 455aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 455
           
 Score =  654 bits (1669), Expect = 0.0
 Identities = 325/456 (71%), Positives = 394/456 (86%), Gaps = 3/456 (0%)

Query: 1   MSVYDEYLDNLKGWRIRKALEIVREKKEEKLEVIKRALQEKDPLVKKGTLYIIKKLAMKK 60
           MSVY+EY++NLKGWR+RKAL+IV E +E ++ ++K+ALQEKDPL+KKGTLYIIKKLAMKK
Sbjct: 1   MSVYEEYMENLKGWRVRKALQIVEEDRENRISILKKALQEKDPLIKKGTLYIIKKLAMKK 60

Query: 61  ELSTNEIRELMPSLIRLLDDKDESVVLQTVETINAIINFMDLPEDLSSELSDVLIGIVEN 120
           EL  +E++E++P LIRLLDDKDE+VVLQ VETINAI+ FM+LPED+S+ LS++LIGIVEN
Sbjct: 61  ELGIDEVKEVIPDLIRLLDDKDETVVLQAVETINAIVTFMELPEDISTRLSEILIGIVEN 120

Query: 121 KPEPINEYAAEGVATLGAKIIMIARKIFSWIRGILQGKSTKKKVSALRVLREIVTRTKNE 180
           KPEPINEYAAEGVATLGAKII +AR IFSWI+ IL+GKS KKKVSALRVL+EIV RTK+ 
Sbjct: 121 KPEPINEYAAEGVATLGAKIIRVARMIFSWIKNILKGKSEKKKVSALRVLKEIVVRTKDP 180

Query: 181 KIMEEAFNLALDVLNDEDPVVRSTALKIIEVAIDRREFLSRESLEKASAMLGSSSIGKET 240
           +IMEEAFNLALDVLNDE+PVVR  AL I+EVAIDR+E+LSRESLEKAS  L        T
Sbjct: 181 EIMEEAFNLALDVLNDENPVVRKAALGIVEVAIDRKEYLSRESLEKASKKLDEMGEASST 240

Query: 241 KEKIDEILQGREEKKVKTEVSV--KDYSVEIIKEMFEREQHMAVLELAKSDYKVLQLVIR 298
           K+KIDEIL+G E KK +  + V  KDY++EIIKEMFEREQH+AVLELAKSDYKVLQLV++
Sbjct: 241 KDKIDEILKG-EFKKAEQPIDVEKKDYTIEIIKEMFEREQHLAVLELAKSDYKVLQLVVK 299

Query: 299 IFLSEDLLTKLDALWVISNATSYIKIDDAMKIIPQLEEFLLHYNPWVRSTSAKVLADLAL 358
           +F+S DLLTKLDALWVISNA  Y+KIDDA KIIPQL++ L HYNPW+RSTSAKVLA LA 
Sbjct: 300 LFISGDLLTKLDALWVISNAVDYLKIDDATKIIPQLKQLLTHYNPWIRSTSAKVLAGLAT 359

Query: 359 EYSSIMEREISKALELIESNDEKLVIAGIELADALLSRIKNIGFLREVMKRLIRKDRLPR 418
            Y S+M+  I  AL L+E  DE  V AG+ELADA LSR+KN+GFLREV+KRLI+KD+LP+
Sbjct: 360 NYPSLMDDLIETALNLLEEKDENSVKAGLELADAFLSRLKNLGFLREVLKRLIKKDKLPK 419

Query: 419 EALDFIKKYESYIEELEPEIKRQISIKLVNSLVGEP 454
           EAL+F+KKY  YIEELEPEIK+ +S+KL+++ +G+P
Sbjct: 420 EALEFMKKYSEYIEELEPEIKKSVSMKLLDTAIGQP 455


>pir||F71028 hypothetical protein PH1520 - Pyrococcus horikoshii
           >gi|3257947|dbj|BAA30630.1| (AP000006) 465aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 465
           
 Score =  178 bits (447), Expect = 1e-43
 Identities = 113/436 (25%), Positives = 232/436 (52%), Gaps = 30/436 (6%)

Query: 9   DNLKGWRIRKALEIVREKKEEKLEVIKRALQEKDPLVKKGTLYIIKKLAMKKELSTNEIR 68
           ++LK W++R+  E + +   EK+++++  L +KD +V + TL+II+KL  +K L  +E+ 
Sbjct: 15  EDLKRWKVREVSEAL-QLSPEKVDILRPLLHDKDNIVVENTLFIIEKLIKRKALKEDEVD 73

Query: 69  ELMPSLIRLLDDKDESVVLQTVETINAIINFMDLPEDLSSELSDVLIGIVENKPEPINEY 128
           EL+  +I L    +E + L+ ++ +  I+  ++L +D  +++   L  ++  K   + EY
Sbjct: 74  ELLDDIITLTRSSNEKIALRGMKCLRTILEDVNLSDDSYNKIIATLTNVITTKKGILREY 133

Query: 129 AAEGVATLGAKIIMIARKIFSWIRGIL-QGKSTKKKVSALRVLREIVTRTKNEKIMEEAF 187
           AAE +  +GAKI  + +K+ +++  ++ + K  + K +AL  L EI +R+K++ ++E   
Sbjct: 134 AAEELGIIGAKITTLIKKVINFLVSLVRESKDREVKEAALTALTEIASRSKDKNVIEGIA 193

Query: 188 NLALDVL-NDEDPVVRSTALKIIEVAI-DRREFLSRESLEKASAMLGSSSIGKETKEKID 245
               DVL  ++D  VR  AL  +E+ +  +++ +S E+L              + + ++ 
Sbjct: 194 KEIRDVLKREQDSEVRKKALSSLEIILTKKKDEISSETL-------------SDIQSEVP 240

Query: 246 EILQGREEKKVKTEVSVKDYSVEIIKEMFEREQHMAVLELAKSDYKVLQLVIRIFLSEDL 305
           E+L  +       E+S++D     I+++F  E+H  V E+AK +  V   +I +  SED 
Sbjct: 241 EVLPTKNH-----EISIQD-----IEKLFALEKHEIVAEIAKENEDVQNAIIDMLSSEDY 290

Query: 306 LTKLDALWVISNATSYIKIDDAMKIIPQLEEFLLHYNPWVRSTSAKVLADLALEYSSIME 365
           L + DALWVI     +I  +    I  +L+  +   NPW+ +++ K LA+L L +  +  
Sbjct: 291 LKRADALWVIYRILRFIPSEKLGNIFSKLKTLVKDKNPWIHNSAIKTLAELYLLFPEVRR 350

Query: 366 REISKALELIESNDEKLVIAGIELADALLSRIKNIGFLRE---VMKRLIRKDRLPREALD 422
             ++    L++S +E+ V  G+E+   LL+   ++   +    +  R ++++++    L 
Sbjct: 351 DILTFLDSLLKSEEEEEVKIGLEIIRELLAYTNDVEIFKATLLITLRRLKENKIRLVILR 410

Query: 423 FIKKYESYIEELEPEI 438
           F      Y  ++E E+
Sbjct: 411 FYASTAEYFTKIEREL 426


>pir||H75105 hypothetical protein PAB1939 - Pyrococcus abyssi (strain Orsay)
           >gi|5458072|emb|CAB49561.1| (AJ248285) hypothetical
           protein [Pyrococcus abyssi]
           Length = 467
           
 Score =  157 bits (392), Expect = 3e-37
 Identities = 103/411 (25%), Positives = 215/411 (52%), Gaps = 24/411 (5%)

Query: 5   DEYLDNLKGWRIRKALEIVREKKEEKLEVIKRALQEKDPLVKKGTLYIIKKLAMKKELST 64
           ++  D+L+ W++R+ LE +   K+ K+E++K+ L +K+  V   TL++I++L    +L +
Sbjct: 11  EQIRDDLRKWKVREVLESLDIAKD-KVEILKKLLTDKNETVVGNTLFVIERLIKDGKLDS 69

Query: 65  NEIRELMPSLIRLLDDKDESVVLQTVETINAIINFMDLPEDLSSELSDVLIGIVENKPEP 124
            +  EL+ ++IRL    ++ + L +++ +  I++ + L      ++ + L GI+ ++   
Sbjct: 70  EQTEELLDTIIRLSKSSNDKIALNSLKCLRTILDNVQLSNQGYDKVINTLSGIITSRRGI 129

Query: 125 INEYAAEGVATLGAKIIMIARKIFSWIRGIL-QGKSTKKKVSALRVLREIVTRTKNEKIM 183
           + EYAAE +  LGAKI    ++I  ++  ++ +GK  + K +AL  L EI +R+ N +++
Sbjct: 130 LREYAAEELGILGAKITSFIKRIVEFLVSLIKEGKDREVKGAALSALTEIASRSDNVEVI 189

Query: 184 EEAFNLALD-VLNDEDPVVRSTALKIIEVAIDRREFLSRESLEKASAMLGSSSIGKETKE 242
           E+      + +  ++D  ++  A+  +E+   ++    R+ L   +          E KE
Sbjct: 190 EDITREIREFIKTEQDAELKKKAISSLEIIFSKK----RDKLTPKTM--------SEIKE 237

Query: 243 KIDEILQGREEKKVKTEVSVKDYSVEIIKEMFEREQHMAVLELAKSDYKVLQLVIRIFLS 302
           ++ EI +  E   V  E +V       I+++FE E+H  V  LAK +  +L+ V+ +  S
Sbjct: 238 EVPEIDKSTE---VPYEENVD------IEKLFEMEKHEVVATLAKENEGILKKVVEMLSS 288

Query: 303 EDLLTKLDALWVISNATSYIKIDDAMKIIPQLEEFLLHYNPWVRSTSAKVLADLALEYSS 362
           ++ + + DALWVI+    ++  + A  ++  L   +   NPW+R+T+ K +A+  + Y  
Sbjct: 289 KEYIRRADALWVIARIIKFLDPNMARYVVKNLAGLVKDRNPWIRNTAIKAIAEAYVLYPE 348

Query: 363 IMEREISKALELIESNDEKLVIAGIELADALLSRIKNIGFLREVMKRLIRK 413
           +    I     L+ SN+++ V   + +   +LS   +    R  +   I+K
Sbjct: 349 VRMDVIPLLDALLRSNNKEDVELALNIIKEILSYSHDEELFRATLILTIKK 399


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.316    0.135    0.352 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140075546
Number of Sequences: 2977
Number of extensions: 5403228
Number of successful extensions: 27133
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27116
Number of HSP's gapped (non-prelim): 5
length of query: 454
length of database: 189,106,746
effective HSP length: 64
effective length of query: 390
effective length of database: 150,803,578
effective search space: 58813395420
effective search space used: 58813395420
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 166 (69.1 bits)