BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1942 (PAB1942) DE:Hypothetical protein
         (387 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75184 hypothetical protein PAB1942 - Pyrococcus abyssi (st...   759  0.0
pir||F71029 hypothetical protein PH1528 - Pyrococcus horikoshii ...   570  e-162

>pir||E75184 hypothetical protein PAB1942 - Pyrococcus abyssi (strain Orsay)
           >gi|5458066|emb|CAB49556.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 387
           
 Score =  759 bits (1939), Expect = 0.0
 Identities = 387/387 (100%), Positives = 387/387 (100%)

Query: 1   MEDINKPSERRDFVVLAGMKNDGTIEFIKVYAIDEKLAISVLERFLTENNIHPSDFIVIQ 60
           MEDINKPSERRDFVVLAGMKNDGTIEFIKVYAIDEKLAISVLERFLTENNIHPSDFIVIQ
Sbjct: 1   MEDINKPSERRDFVVLAGMKNDGTIEFIKVYAIDEKLAISVLERFLTENNIHPSDFIVIQ 60

Query: 61  KGFEDVRGKEIISTRTEEELGAMLARLGLKLVSNGVLYLEGRDSIYQITAISKELLEKLS 120
           KGFEDVRGKEIISTRTEEELGAMLARLGLKLVSNGVLYLEGRDSIYQITAISKELLEKLS
Sbjct: 61  KGFEDVRGKEIISTRTEEELGAMLARLGLKLVSNGVLYLEGRDSIYQITAISKELLEKLS 120

Query: 121 EKRETKLPIQEEVSIDLSNVGLPERYVKKMLLVSLMGDTFILNRAELDIANVLRKAVKGS 180
           EKRETKLPIQEEVSIDLSNVGLPERYVKKMLLVSLMGDTFILNRAELDIANVLRKAVKGS
Sbjct: 121 EKRETKLPIQEEVSIDLSNVGLPERYVKKMLLVSLMGDTFILNRAELDIANVLRKAVKGS 180

Query: 181 VSIPRLIERDSVIIKIFDEEIHEVKGSYLDMVIVTPPVVHWDSHIDDMNSFSFREIEENV 240
           VSIPRLIERDSVIIKIFDEEIHEVKGSYLDMVIVTPPVVHWDSHIDDMNSFSFREIEENV
Sbjct: 181 VSIPRLIERDSVIIKIFDEEIHEVKGSYLDMVIVTPPVVHWDSHIDDMNSFSFREIEENV 240

Query: 241 FEPPIFMKAMKGFLVLTEPPRDLVVMLLKLKRRGEMRVTLNGRQFKLPVDFTIIVDTKYP 300
           FEPPIFMKAMKGFLVLTEPPRDLVVMLLKLKRRGEMRVTLNGRQFKLPVDFTIIVDTKYP
Sbjct: 241 FEPPIFMKAMKGFLVLTEPPRDLVVMLLKLKRRGEMRVTLNGRQFKLPVDFTIIVDTKYP 300

Query: 301 EKYSGLKFPIRINLPPLDDDTFSQVLSKELGINVPMEIVSMFPAEYKTFLGVEILVNLWD 360
           EKYSGLKFPIRINLPPLDDDTFSQVLSKELGINVPMEIVSMFPAEYKTFLGVEILVNLWD
Sbjct: 301 EKYSGLKFPIRINLPPLDDDTFSQVLSKELGINVPMEIVSMFPAEYKTFLGVEILVNLWD 360

Query: 361 KLKNFEEGKSDIELLKEMATIVTGGVI 387
           KLKNFEEGKSDIELLKEMATIVTGGVI
Sbjct: 361 KLKNFEEGKSDIELLKEMATIVTGGVI 387


>pir||F71029 hypothetical protein PH1528 - Pyrococcus horikoshii
           >gi|3257955|dbj|BAA30638.1| (AP000006) 388aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 388
           
 Score =  570 bits (1454), Expect = e-162
 Identities = 275/389 (70%), Positives = 343/389 (87%), Gaps = 3/389 (0%)

Query: 1   MEDINKPSERRDFVVLAGMKNDGTIEFIKVYAIDEKLAISVLERFLTENNIHPSDFIVIQ 60
           ME I+KP ER D VV AGMK DGTIEFIKVYA++E LAI++L++FL ENN+HPSDF+VIQ
Sbjct: 1   MEGISKPMERYDSVVFAGMKQDGTIEFIKVYALNEDLAITILDQFLRENNLHPSDFVVIQ 60

Query: 61  KGFEDVRGKEIISTRTEEELGAMLARLGLKLVSNGVLYLEGRDSIYQITAISKELLEKLS 120
           +G ED++GK+IISTRTEE+L AMLARLGL+LVSNGVL+  G + IYQITAISK L+E+L 
Sbjct: 61  RGLEDIKGKDIISTRTEEDLSAMLARLGLRLVSNGVLHTRGAEKIYQITAISKSLIERLQ 120

Query: 121 EKRETKLP--IQEEVSIDLSNVGLPERYVKKMLLVSLMGDTFILNRAELDIANVLRKAVK 178
            + + K+   I+EE+SID SN+ LPE+Y+KK+LL+SLM DTFILNRAEL++  V+++AVK
Sbjct: 121 GEDKDKVSTIIKEEISIDFSNLKLPEKYMKKLLLLSLMEDTFILNRAELNVPEVIKRAVK 180

Query: 179 GSVSIPRLIERDSVIIKIFDEEIHEVKGSYLDMVIVTPPVVHWDSHIDDMNSFSFREIEE 238
           G VSIPRLIERD++IIK+FDEE+H V+GSYLD VI+TPPVVHWD+HID+++SFSF+E+EE
Sbjct: 181 GVVSIPRLIERDNIIIKVFDEELHTVQGSYLDRVIITPPVVHWDAHIDELDSFSFQEVEE 240

Query: 239 NVFEPPIFMKAMKGFLVLTEPPRDLVVMLLKLKRRGEMRVTLNGRQFKLPVDFTIIVDTK 298
           NV+EPP+F+KAMKGFLVLTEPPRDLVVMLLKLKRRGE++V+L GRQ ++P++FT++VDTK
Sbjct: 241 NVYEPPLFVKAMKGFLVLTEPPRDLVVMLLKLKRRGEVKVSLKGRQIRIPLNFTLVVDTK 300

Query: 299 YPEKYSGLKFPIRINLPPLDDDTFSQVLSKELGINVPMEIVSMFPAEYKTFLGVEILVNL 358
           YPE+YSGLKFPIRINLPP DD+TF+Q+LS  LG  VP ++V+MFP EYKTFLGVEIL NL
Sbjct: 301 YPERYSGLKFPIRINLPPFDDETFAQMLSMVLGTKVPQDLVAMFPEEYKTFLGVEILSNL 360

Query: 359 WDKLKNFEEGKSDIELLKEMATIVTGGVI 387
           W KL+     KS+IELLKEMATIVTGG+I
Sbjct: 361 WKKLRK-RGRKSEIELLKEMATIVTGGII 388


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.141    0.389 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137982347
Number of Sequences: 2977
Number of extensions: 5807024
Number of successful extensions: 13777
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13773
Number of HSP's gapped (non-prelim): 2
length of query: 387
length of database: 189,106,746
effective HSP length: 58
effective length of query: 329
effective length of database: 154,394,500
effective search space: 50795790500
effective search space used: 50795790500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 166 (69.1 bits)