BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1944 (PAB1944) DE:Hypothetical protein
(170 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75184 hypothetical protein PAB1944 - Pyrococcus abyssi (st... 337 4e-92
pir||H71029 hypothetical protein PH1530 - Pyrococcus horikoshii ... 294 5e-79
sp|Q58346|Y936_METJA HYPOTHETICAL PROTEIN MJ0936 >gi|2128587|pir... 171 5e-42
pir||G69035 conserved hypothetical protein MTH1262 - Methanobact... 157 7e-38
pir||H72401 conserved hypothetical protein - Thermotoga maritima... 125 2e-28
pir||A72657 hypothetical protein APE0682 - Aeropyrum pernix (str... 125 2e-28
gi|11498524 conserved hypothetical protein [Archaeoglobus fulgid... 118 5e-26
>pir||C75184 hypothetical protein PAB1944 - Pyrococcus abyssi (strain Orsay)
>gi|5458064|emb|CAB49554.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 170
Score = 337 bits (856), Expect = 4e-92
Identities = 170/170 (100%), Positives = 170/170 (100%)
Query: 1 MKVGIMSDTHDNLPAIRLAVDFFNKEKVDLVIHAGDYVAPFVARELSKLNAPLRGVFGNN 60
MKVGIMSDTHDNLPAIRLAVDFFNKEKVDLVIHAGDYVAPFVARELSKLNAPLRGVFGNN
Sbjct: 1 MKVGIMSDTHDNLPAIRLAVDFFNKEKVDLVIHAGDYVAPFVARELSKLNAPLRGVFGNN 60
Query: 61 DGEREGLKEKLGIKDEILTLNLDDLKVIVLHGTDERIVEALAKSQLYDIVIRGHTHRHRI 120
DGEREGLKEKLGIKDEILTLNLDDLKVIVLHGTDERIVEALAKSQLYDIVIRGHTHRHRI
Sbjct: 61 DGEREGLKEKLGIKDEILTLNLDDLKVIVLHGTDERIVEALAKSQLYDIVIRGHTHRHRI 120
Query: 121 QEVGRTIVVNPGEVCGYLTGVKSVAILNTKEREVRIINLETEEILGIMSL 170
QEVGRTIVVNPGEVCGYLTGVKSVAILNTKEREVRIINLETEEILGIMSL
Sbjct: 121 QEVGRTIVVNPGEVCGYLTGVKSVAILNTKEREVRIINLETEEILGIMSL 170
>pir||H71029 hypothetical protein PH1530 - Pyrococcus horikoshii
>gi|3257957|dbj|BAA30640.1| (AP000006) 172aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 172
Score = 294 bits (744), Expect = 5e-79
Identities = 143/170 (84%), Positives = 161/170 (94%)
Query: 1 MKVGIMSDTHDNLPAIRLAVDFFNKEKVDLVIHAGDYVAPFVARELSKLNAPLRGVFGNN 60
MKVGIMSDTHDNL AIRLAV+FFN+E V+LV+HAGD+VAPFVA+ELS L APL+GVFGNN
Sbjct: 3 MKVGIMSDTHDNLSAIRLAVEFFNREGVNLVLHAGDFVAPFVAKELSNLKAPLKGVFGNN 62
Query: 61 DGEREGLKEKLGIKDEILTLNLDDLKVIVLHGTDERIVEALAKSQLYDIVIRGHTHRHRI 120
DGEREGL+EKLGIKD+ILTLNLD LKV++LHGTDER+VEA AKSQLYDIVIRGHTH++ I
Sbjct: 63 DGEREGLREKLGIKDDILTLNLDGLKVVMLHGTDERVVEAFAKSQLYDIVIRGHTHKYGI 122
Query: 121 QEVGRTIVVNPGEVCGYLTGVKSVAILNTKEREVRIINLETEEILGIMSL 170
QEVGRTIVVNPGEVCGYLTG+KSVA+LNT EREVRIINL+T EILGI+SL
Sbjct: 123 QEVGRTIVVNPGEVCGYLTGIKSVALLNTTEREVRIINLKTGEILGIISL 172
>sp|Q58346|Y936_METJA HYPOTHETICAL PROTEIN MJ0936 >gi|2128587|pir||H64416 conserved
hypothetical protein MJ0936 - Methanococcus jannaschii
>gi|1499771|gb|AAB98941.1| (U67537) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 166
Score = 171 bits (428), Expect = 5e-42
Identities = 83/166 (50%), Positives = 113/166 (68%), Gaps = 6/166 (3%)
Query: 1 MKVGIMSDTHDNLPAIRLAVDFFNKEKVDLVIHAGDYVAPFVARELSKLNAPLRGVFGNN 60
MK+GIMSDTHD+LP IR A++ FN E V+ VIH GD+V+ FV +E LNA + +GNN
Sbjct: 1 MKIGIMSDTHDHLPNIRKAIEIFNDENVETVIHCGDFVSLFVIKEFENLNANIIATYGNN 60
Query: 61 DGEREGLKEKL------GIKDEILTLNLDDLKVIVLHGTDERIVEALAKSQLYDIVIRGH 114
DGER LKE L I D+ +++ +DDLK + HG + ++E KS LYD+VI GH
Sbjct: 61 DGERCKLKEWLKDINEENIIDDFISVEIDDLKFFITHGHHQSVLEMAIKSGLYDVVIYGH 120
Query: 115 THRHRIQEVGRTIVVNPGEVCGYLTGVKSVAILNTKEREVRIINLE 160
TH +EV +V+NPGE CGYLTG+ ++ IL+T+++E R I LE
Sbjct: 121 THERVFEEVDDVLVINPGECCGYLTGIPTIGILDTEKKEYREIVLE 166
>pir||G69035 conserved hypothetical protein MTH1262 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622376|gb|AAB85751.1| (AE000893) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 163
Score = 157 bits (393), Expect = 7e-38
Identities = 72/160 (45%), Positives = 109/160 (68%), Gaps = 4/160 (2%)
Query: 3 VGIMSDTHDNLPAIRLAVDFFNKEKVDLVIHAGDYVAPFVARELSKLNAPLRGVFGNNDG 62
+G+++D+HDNL AI AVD+ N+E VDLVIHAGD ++PF A E KL +FGNNDG
Sbjct: 5 IGLIADSHDNLEAIGRAVDYLNRESVDLVIHAGDLISPFTAPEFGKLEMKFEAIFGNNDG 64
Query: 63 EREGLKEKLGIKDEI---LTLNLDDLKVIVLHGTDERIVEALAKSQLYDIVIRGHTHRHR 119
ER+GL++ E+ +L DDL++ V+HG + I+E + S YD+V+ GHTH+ +
Sbjct: 65 ERDGLRKAYSHLTELSDFKSLRFDDLRIAVIHGHEPEILECVVGSGRYDLVVTGHTHKRK 124
Query: 120 IQEVGRTIVVNPGEVCGYLTGVKSVAILNTKEREVRIINL 159
+ G T+ VNPGE+CGYL+G +++A+L+T + ++L
Sbjct: 125 FSDSG-TVTVNPGELCGYLSGERTLALLDTDSMKCEFVSL 163
>pir||H72401 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4980728|gb|AAD35321.1|AE001707_8 (AE001707)
conserved hypothetical protein [Thermotoga maritima]
Length = 158
Score = 125 bits (312), Expect = 2e-28
Identities = 59/157 (37%), Positives = 102/157 (64%), Gaps = 4/157 (2%)
Query: 5 IMSDTHDNLPAIRLAVDFFNKEKVDLVIHAGDYVAPFVARELSKLNAPLRGVFGNNDGER 64
I+SDTHDN+ ++ + +++ ++ + H GD+VAPF L K GVFGNNDGE
Sbjct: 4 ILSDTHDNMEVLKKVEELVSEKNIEKIFHCGDFVAPFTLGRLIKEGVDFYGVFGNNDGEV 63
Query: 65 EGLKEKLG--IKDEILTLNLDDLKVIVLHGTDERIVEALAKSQLYDIVIRGHTHRHRIQE 122
L ++ G IK ++L +D L++ ++H + +++A+ +SQ +D+V+ GHTH+ +++
Sbjct: 64 LLLDKRSGGRIKKPPISLEVDGLRIAMMH--EPVLLDAIVRSQEFDLVLYGHTHKVDVRK 121
Query: 123 VGRTIVVNPGEVCGYLTGVKSVAILNTKEREVRIINL 159
G+T+VVNPGE CGYL+G +V + + + RE ++ L
Sbjct: 122 EGKTLVVNPGEACGYLSGRSTVYLFDPRTREGELLEL 158
>pir||A72657 hypothetical protein APE0682 - Aeropyrum pernix (strain K1)
>gi|5104342|dbj|BAA79657.1| (AP000060) 183aa long
hypothetical protein [Aeropyrum pernix]
Length = 183
Score = 125 bits (312), Expect = 2e-28
Identities = 73/171 (42%), Positives = 104/171 (60%), Gaps = 14/171 (8%)
Query: 3 VGIMSDTHDNLPAIRLAVDFFNKEKVDLVIHAGDYVAPFVARELSKL---NAPLRGVFGN 59
VG++SDTHDNL R A + F +E+V+ VIH GDYVAPF EL + A GVFGN
Sbjct: 13 VGVISDTHDNLALARRAGEIFARERVEAVIHLGDYVAPFTLAELLGVVGGKAVFYGVFGN 72
Query: 60 NDGEREGLKEKLG-----IKDEILTLNLDDLKVIVLHG-----TDERIVEALAKSQLYDI 109
NDGER GL G + D T+++ ++++LHG +V+ALA S +D
Sbjct: 73 NDGERLGLSRVAGGFGASLLDPPATVSIGGRRLLLLHGFGSPENTVELVDALASSGRWDA 132
Query: 110 VIRGHTHRHRIQEVGRTIVVNPGEVCGYLTGVKSVAILNTKEREVRIINLE 160
V+ GHTH+ R++ VG ++V+NPG+ G L S AIL+ + E R+++LE
Sbjct: 133 VLYGHTHKARVERVGGSLVLNPGDGGGSLE-KPSAAILDLESMEARLVSLE 182
>gi|11498524 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7450777|pir||G69364 conserved hypothetical protein
AF0919 - Archaeoglobus fulgidus
>gi|2649682|gb|AAB90324.1| (AE001040) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 151
Score = 118 bits (292), Expect = 5e-26
Identities = 65/159 (40%), Positives = 97/159 (60%), Gaps = 8/159 (5%)
Query: 1 MKVGIMSDTHDNLPAIRLAVDFFNKEKVDLVIHAGDYVAPFVARELSKLNAPLRGVFGNN 60
M+ ++SDTHDNL A++ D +KEK+D V+HAGD +APF +E +L L FGNN
Sbjct: 1 MRFAVVSDTHDNLSAVKELADALSKEKLDFVVHAGDVIAPFTLKEFERLGVKLYIAFGNN 60
Query: 61 DGEREGLKEKLGIKDEILTLNLDDLKVIVLHGTDERIVEALAKSQLYDIVIRGHTHRHRI 120
DGER L + + ++ +V HGTD+R++E L K L +V+ GHTH
Sbjct: 61 DGERRILTQIAERNSWEIGDIVEFPGGVVYHGTDKRVLEVLKK--LETLVVFGHTH---- 114
Query: 121 QEVGRTIVVNPGEVCGYLTGVKSVAILNTKEREVRIINL 159
+ + ++NPGEVCGYLTG ++ AI+ ++ E+ I+ L
Sbjct: 115 EVLKEKNLLNPGEVCGYLTGKRTYAIV--EDGEISILEL 151
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.320 0.141 0.392
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59928926
Number of Sequences: 2977
Number of extensions: 2373055
Number of successful extensions: 5931
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5918
Number of HSP's gapped (non-prelim): 7
length of query: 170
length of database: 189,106,746
effective HSP length: 55
effective length of query: 115
effective length of database: 156,189,961
effective search space: 17961845515
effective search space used: 17961845515
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 162 (67.5 bits)