BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1946 (PAB1946) DE:Hypothetical protein
(142 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75183 hypothetical protein PAB1946 - Pyrococcus abyssi (st... 291 3e-78
pir||F71030 hypothetical protein PH1536 - Pyrococcus horikoshii ... 259 8e-69
sp|Q60334|Y024_METJA HYPOTHETICAL PROTEIN MJ0024 >gi|2128088|pir... 157 5e-38
gb|AAK40990.1| Conserved hypothetical protein [Sulfolobus solfat... 123 1e-27
emb|CAB57613.1| (Y18930) hypothetical protein [Sulfolobus solfat... 123 1e-27
pir||A72770 hypothetical protein APE0148 - Aeropyrum pernix (str... 120 7e-27
pir||C69080 conserved hypothetical protein MTH1598 - Methanobact... 116 1e-25
gb|AAF55906.1| (AE003735) CG6353 gene product [Drosophila melano... 94 5e-19
pir||D70482 conserved hypothetical protein aq_2128 - Aquifex aeo... 88 5e-17
gi|11499090 conserved hypothetical protein [Archaeoglobus fulgid... 87 7e-17
pir||T33468 hypothetical protein C43H8.1 - Caenorhabditis elegan... 80 9e-15
>pir||C75183 hypothetical protein PAB1946 - Pyrococcus abyssi (strain Orsay)
>gi|5458056|emb|CAB49546.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 142
Score = 291 bits (736), Expect = 3e-78
Identities = 142/142 (100%), Positives = 142/142 (100%)
Query: 1 MKRWEHYEHTADIGIRGYGDSLEEAFEAVAIALFDVIVNVNKVEKKEVREVEVEGEDLES 60
MKRWEHYEHTADIGIRGYGDSLEEAFEAVAIALFDVIVNVNKVEKKEVREVEVEGEDLES
Sbjct: 1 MKRWEHYEHTADIGIRGYGDSLEEAFEAVAIALFDVIVNVNKVEKKEVREVEVEGEDLES 60
Query: 61 LLYNFLEELLVIHDIEGLVFRDFEVKIEKTEKGYKLKAKAYGEKLDPEKHEPKEEVKAIT 120
LLYNFLEELLVIHDIEGLVFRDFEVKIEKTEKGYKLKAKAYGEKLDPEKHEPKEEVKAIT
Sbjct: 61 LLYNFLEELLVIHDIEGLVFRDFEVKIEKTEKGYKLKAKAYGEKLDPEKHEPKEEVKAIT 120
Query: 121 YHDMKIEKLPDGRWMAQLVPDI 142
YHDMKIEKLPDGRWMAQLVPDI
Sbjct: 121 YHDMKIEKLPDGRWMAQLVPDI 142
>pir||F71030 hypothetical protein PH1536 - Pyrococcus horikoshii
>gi|3257963|dbj|BAA30646.1| (AP000006) 142aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 142
Score = 259 bits (656), Expect = 8e-69
Identities = 124/142 (87%), Positives = 136/142 (95%)
Query: 1 MKRWEHYEHTADIGIRGYGDSLEEAFEAVAIALFDVIVNVNKVEKKEVREVEVEGEDLES 60
MK+WEHYEHTADIGIRGYGDSLEEAFEAVAIALFDV+VNVNKVEKKEVRE+EVE EDLE+
Sbjct: 1 MKKWEHYEHTADIGIRGYGDSLEEAFEAVAIALFDVMVNVNKVEKKEVREIEVEAEDLEA 60
Query: 61 LLYNFLEELLVIHDIEGLVFRDFEVKIEKTEKGYKLKAKAYGEKLDPEKHEPKEEVKAIT 120
LLY+FLEELLVIHDIEGLVFRDFEVKIE+ Y+L+AKAYGEKLD +KHEPKEEVKAIT
Sbjct: 61 LLYSFLEELLVIHDIEGLVFRDFEVKIERVNGKYRLRAKAYGEKLDLKKHEPKEEVKAIT 120
Query: 121 YHDMKIEKLPDGRWMAQLVPDI 142
YHDMKIE+LP+G+WMAQLVPDI
Sbjct: 121 YHDMKIERLPNGKWMAQLVPDI 142
>sp|Q60334|Y024_METJA HYPOTHETICAL PROTEIN MJ0024 >gi|2128088|pir||H64302 conserved
hypothetical protein MJ0024 - Methanococcus jannaschii
>gi|1498783|gb|AAB98005.1| (U67461) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 139
Score = 157 bits (393), Expect = 5e-38
Identities = 75/139 (53%), Positives = 103/139 (73%), Gaps = 1/139 (0%)
Query: 4 WEHYEHTADIGIRGYGDSLEEAFEAVAIALFDVIVNVNKVEKKEVREVEVEGEDLESLLY 63
+ ++E TAD+G+ G SLEEAF+ A L++++V+++KV+KKE E E+ GEDLE LLY
Sbjct: 2 FNYFETTADLGVEAKGKSLEEAFKEGAKGLYNIMVDIDKVDKKEKIEFEITGEDLEELLY 61
Query: 64 NFLEELLVIHDIEGLVFRDFEVKIEKTEKGYKLKAKAYGEKLDPEKHEPKEEVKAITYHD 123
NFL ELL D+E LVF DF+VKIEK + GY+LK AYGEK++ EKH KEEVKA+TYH
Sbjct: 62 NFLNELLFYTDVENLVFNDFDVKIEKNDNGYRLKCTAYGEKINKEKHNIKEEVKAVTYHK 121
Query: 124 MKIEKLPDGRWMAQLVPDI 142
M+I++ DG W + + D+
Sbjct: 122 MEIKQEEDG-WKIRYIVDL 139
>gb|AAK40990.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 139
Score = 123 bits (305), Expect = 1e-27
Identities = 62/142 (43%), Positives = 95/142 (66%), Gaps = 3/142 (2%)
Query: 1 MKRWEHYEHTADIGIRGYGDSLEEAFEAVAIALFDVIVNVNKVEKKEVREVEVEGEDLES 60
M+++E +EHTAD+GI+ YG SLEEAF A+ +F+VI + +KV E RE+ + G DLE+
Sbjct: 1 MRQFEFFEHTADVGIKSYGRSLEEAFSNAALGVFEVITDTSKVRPVEYREIYLNGYDLEN 60
Query: 61 LLYNFLEELLVIHDIEGLVFRDFEVKIEKTEKGYKLKAKAYGEKLDPEKHEPKEEVKAIT 120
LLY ++EELL +D E ++F F++ I+ + L+ KA+GE+ + + HE + VKA+T
Sbjct: 61 LLYKWIEELLYYYDSELMIFSKFDLMID--QDSITLEGKAWGERFNDKIHERRTVVKAMT 118
Query: 121 YHDMKIEKLPDGRWMAQLVPDI 142
YH + IEK G ++ V DI
Sbjct: 119 YHQLSIEKTESG-YVITFVVDI 139
>emb|CAB57613.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
Length = 139
Score = 123 bits (305), Expect = 1e-27
Identities = 62/142 (43%), Positives = 95/142 (66%), Gaps = 3/142 (2%)
Query: 1 MKRWEHYEHTADIGIRGYGDSLEEAFEAVAIALFDVIVNVNKVEKKEVREVEVEGEDLES 60
M+++E +EHTAD+GI+ YG SLEEAF A+ +F+VI + +KV E RE+ + G DLE+
Sbjct: 1 MRQFEFFEHTADVGIKSYGRSLEEAFSNAALGVFEVITDTSKVRPVEYREIYLNGYDLEN 60
Query: 61 LLYNFLEELLVIHDIEGLVFRDFEVKIEKTEKGYKLKAKAYGEKLDPEKHEPKEEVKAIT 120
LLY ++EELL +D E ++F F++ I+ + L+ KA+GE+ + + HE + VKA+T
Sbjct: 61 LLYKWIEELLYYYDSELMIFSKFDLMID--QDSITLEGKAWGERFNDKIHERRTVVKAMT 118
Query: 121 YHDMKIEKLPDGRWMAQLVPDI 142
YH + IEK G ++ V DI
Sbjct: 119 YHQLSIEKTESG-YVITFVVDI 139
>pir||A72770 hypothetical protein APE0148 - Aeropyrum pernix (strain K1)
>gi|5103538|dbj|BAA79059.1| (AP000058) 162aa long
hypothetical protein [Aeropyrum pernix]
Length = 162
Score = 120 bits (298), Expect = 7e-27
Identities = 64/140 (45%), Positives = 89/140 (62%), Gaps = 2/140 (1%)
Query: 4 WEHYEHTADIGIRGYGDSLEEAFEAVAIALFDVIVNVNKVEKKEVREVEVEGEDLESLLY 63
W H EHTAD+ + YG +LEEAFE A +++V+ + ++VE + + +EG DLE+LLY
Sbjct: 24 WMHEEHTADVLVIAYGRTLEEAFENAARGVYEVVTDTSRVEPRRRVDASIEGIDLENLLY 83
Query: 64 NFLEELLVIHDIEGLVFRDFEV-KIEKTEKGYKLKAKAYGEKLDPEKHEPKEEVKAITYH 122
F+E L+ D EGLVF F V KIE + + A A+GE+ DP +HE + VKA+TY
Sbjct: 84 RFIENLIAYTDSEGLVFGLFRVCKIECNGESCSIVASAWGEEFDPSRHEHRTIVKAMTYA 143
Query: 123 DMKIEKLPDGRWMAQLVPDI 142
DM+I K +G W Q V DI
Sbjct: 144 DMEI-KEENGCWRVQFVVDI 162
>pir||C69080 conserved hypothetical protein MTH1598 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622722|gb|AAB86071.1| (AE000919) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 140
Score = 116 bits (288), Expect = 1e-25
Identities = 63/142 (44%), Positives = 93/142 (65%), Gaps = 2/142 (1%)
Query: 1 MKRWEHYEHTADIGIRGYGDSLEEAFEAVAIALFDVIVNVNKVEKKEVREVEVEGEDLES 60
MK +E ++ TAD G YG LEE FE A+A+F+V+ + + VE E R VE+ ED S
Sbjct: 1 MKGFEFFDVTADAGFWAYGHDLEEVFENAALAMFEVMTDTSLVEAAEERRVEITSEDRVS 60
Query: 61 LLYNFLEELLVIHDIEGLVFRDFEVKIEKTEKGYKLKAKAYGEKLDPEKHEPKEEVKAIT 120
LLY++L+ELL IHD E ++F F+VKI++ + G L A GE++ E HE ++EVKA+T
Sbjct: 61 LLYDWLDELLFIHDTEFILFSKFKVKIDEKDDGLHLTGTAMGEEI-KEGHERRDEVKAVT 119
Query: 121 YHDMKIEKLPDGRWMAQLVPDI 142
+H M+I DG A+++ D+
Sbjct: 120 FHMMEILD-EDGLIKARVILDL 140
>gb|AAF55906.1| (AE003735) CG6353 gene product [Drosophila melanogaster]
Length = 156
Score = 94.4 bits (231), Expect = 5e-19
Identities = 50/125 (40%), Positives = 77/125 (61%), Gaps = 2/125 (1%)
Query: 3 RWEHYEHTADIGIRGYGDSLEEAFEAVAIALFDVIVNVNKVEKKEVREVEVEGEDLESLL 62
++E+ +HTAD+ I G+G SL+EAFE +A+F + ++ V ++ E+E G+DLESLL
Sbjct: 16 KYEYLDHTADVQIHGWGSSLKEAFEQCGVAMFGYMTELDYVSVEQCFEIEAHGDDLESLL 75
Query: 63 YNFLEELLVIHDIEG-LVFRDFEVKIEKTEKGYKLKAKAYGEKLDPEKHEPKEEVKAITY 121
++FL+ELL + E LV + E+ E +++ YGE + KH EVKAITY
Sbjct: 76 FHFLDELLFLFSAEPYLVCKKLEITKFDVE-NFEISCHCYGEPFELGKHPQGTEVKAITY 134
Query: 122 HDMKI 126
M+I
Sbjct: 135 SAMQI 139
>pir||D70482 conserved hypothetical protein aq_2128 - Aquifex aeolicus
>gi|2984340|gb|AAC07861.1| (AE000774) hypothetical
protein [Aquifex aeolicus]
Length = 140
Score = 87.8 bits (214), Expect = 5e-17
Identities = 53/136 (38%), Positives = 82/136 (59%), Gaps = 5/136 (3%)
Query: 7 YEHTADIGIRGYGDSLEEAFEAVAIALFDVIVNVNKVEKKEVREVEVEGEDLESLLYNFL 66
Y+ TAD GIR +LEE F +A F+ I +++KVE KE E++ + D+ LL + +
Sbjct: 10 YDITADAGIRVRAKTLEELFCHAILATFNEITDIDKVEPKEEYEIQAQ-NDMPFLLADII 68
Query: 67 EELLVIHDIEGLVFRDFEVKIEKTEKGYKLKAKAYGEKLDPEKHEPKEEVKAITYHDMKI 126
E LV+H+ + V + EV +E E K+K K GEK DP++H K +KA TYH +++
Sbjct: 69 NEALVLHESKHFVASECEV-LELKEDFVKVKLK--GEKFDPKRHPSKLVIKAATYHRLRV 125
Query: 127 EKLPDGRWMAQLVPDI 142
EK + W A+++ DI
Sbjct: 126 EK-KNEHWEAEVIFDI 140
>gi|11499090 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7450828|pir||F69436 conserved hypothetical protein
AF1495 - Archaeoglobus fulgidus
>gi|2649065|gb|AAB89747.1| (AE000999) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 137
Score = 87.4 bits (213), Expect = 7e-17
Identities = 53/140 (37%), Positives = 77/140 (54%), Gaps = 4/140 (2%)
Query: 3 RWEHYEHTADIGIRGYGDSLEEAFEAVAIALFDVIVNVNKVEKKEVREVEVEGEDLESLL 62
++ +HTADI YG +L E FE A+A +D V+ + + + VE EGED+E L
Sbjct: 2 KYRFIDHTADIAFEVYGSNLRELFENAALAFYDAFVDTSGIGIEREVGVECEGEDVEITL 61
Query: 63 YNFLEELLVIHDIEGLVFRDFEVKIEKTEKGYKLKAKAYGEKLDPEKHEPKEEVKAITYH 122
Y +L ELL + D E +D EV++E+ + G K K G + E K E KAIT H
Sbjct: 62 YRWLNELLYLFDTEFFAAKDVEVEVEEGD-GVKASGKLRGGRFSAEM--VKVEPKAITLH 118
Query: 123 DMKIEKLPDGRWMAQLVPDI 142
++EK G ++A +V DI
Sbjct: 119 KFRVEKTDKG-YVAFVVVDI 137
>pir||T33468 hypothetical protein C43H8.1 - Caenorhabditis elegans
>gi|3786408|gb|AAC67396.1| (AF098499) C43H8.1 gene
product [Caenorhabditis elegans]
Length = 155
Score = 80.4 bits (195), Expect = 9e-15
Identities = 40/131 (30%), Positives = 79/131 (59%), Gaps = 2/131 (1%)
Query: 2 KRWEHYEHTADIGIRGYGDSLEEAFEAVAIALFDVIVNVNKVEKKEVREVEVEGEDLESL 61
+R+E+ +H ADI + +G ++EEAFEA +++F + ++ KV++ + G+ L+ L
Sbjct: 16 RRFEYLDHPADIQLHSWGSTMEEAFEACLVSMFGYMTDLAKVDEMYEFYWKASGDSLDGL 75
Query: 62 LYNFLEELL-VIHDIEGLVFRDFEVKIEKTEKGYKLKAKAYGEKLDPEKHEPKEEVKAIT 120
L+ FL+E L H V + E+ + +K ++++ + +GE D KHE + ++K+ T
Sbjct: 76 LFQFLDEALNSFHAEPCFVAKRVEI-LRFDKKKFEIEFRGWGESFDTSKHETEADIKSPT 134
Query: 121 YHDMKIEKLPD 131
Y +M+I + P+
Sbjct: 135 YSNMQINEKPE 145
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.315 0.138 0.391
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54475569
Number of Sequences: 2977
Number of extensions: 2148021
Number of successful extensions: 5934
Number of sequences better than 1.0e-10: 11
Number of HSP's better than 0.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5916
Number of HSP's gapped (non-prelim): 11
length of query: 142
length of database: 189,106,746
effective HSP length: 54
effective length of query: 88
effective length of database: 156,788,448
effective search space: 13797383424
effective search space used: 13797383424
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 161 (67.1 bits)