BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1947 (PAB1947) DE:proliferating-cell nucleolar antigen P120,
putative
(311 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B75183 probable proliferating-cell nucleolar antigen p120 P... 629 e-180
pir||G71030 probable nucleolar protein - Pyrococcus horikoshii >... 570 e-162
gi|11498459 proliferating-cell nucleolar antigen P120, putative ... 362 3e-99
pir||G75121 nucleolar protein PAB0523 - Pyrococcus abyssi (strai... 209 3e-53
pir||H71009 probable proliferating-cell nucleolar protein p120 -... 199 3e-50
gb|AAK40591.1| Proliferating-cell nucleolar antigen p120 homolog... 176 3e-43
pir||A82193 Sun/nucleolar protein family protein VC1502 [importe... 175 6e-43
gi|11499621 proliferating-cell nucleolar antigen P120, putative ... 171 9e-42
pir||A48998 nucleolar protein p120 - mouse (fragment) 171 9e-42
gi|6324268 90-kDa protein, located in nucleolus, that is homolog... 170 2e-41
emb|CAA58502.1| (X83512) Yna1p [Saccharomyces cerevisiae] 170 2e-41
pir||C64945 probable rRNA methylase yebU - Escherichia coli >gi|... 170 2e-41
sp|P76273|YEBU_ECOLI HYPOTHETICAL 53.2 KD PROTEIN IN PRC-PRPA IN... 170 2e-41
gi|5453792 nucleolar protein 1 (120kD) [Homo sapiens] >gi|117174... 169 4e-41
gi|11436286 nucleolar protein 1 (120kD) [Homo sapiens] 169 4e-41
gb|AAA36398.1| (M32110) proliferating cell nuclear protein P120 ... 169 4e-41
gb|AAF58504.1| (AE003822) CG8545 gene product [Drosophila melano... 168 6e-41
dbj|BAB08657.1| (AB026659) nucleolar protein-like [Arabidopsis t... 164 1e-39
gb|AAG19031.1| (AE005002) proliferating-cell nucleolar antigen; ... 162 6e-39
pir||T40814 probable nucleolar protein-NOL1-NOP2-sun family - fi... 157 2e-37
sp|Q60343|Y026_METJA HYPOTHETICAL PROTEIN MJ0026 >gi|2127710|pir... 154 1e-36
pir||T33803 hypothetical protein W07E6.1 - Caenorhabditis elegan... 150 2e-35
pir||C72748 probable sun protein APE0514 - Aeropyrum pernix (str... 144 1e-33
pir||G75137 sun protein (fmu protein) PAB2390 - Pyrococcus abyss... 143 3e-33
pir||G71135 probable fmu protein - Pyrococcus horikoshii >gi|325... 142 6e-33
pir||C71102 probable fmu protein - Pyrococcus horikoshii >gi|325... 142 6e-33
pir||D75033 probable proliferating-cell nucleolar antigen p120 P... 142 6e-33
gb|AAF14354.1|AF113138_1 (AF113138) nucleolar protein Nop2 [Erem... 138 7e-32
pir||A75030 probable proliferating-cell nucleolar antigen p120 P... 134 1e-30
pir||G71215 probable nucleolar protein - Pyrococcus horikoshii >... 132 4e-30
pir||T38272 probable NOL1-NOP2-sun family nucleolar protein - fi... 127 2e-28
pir||T08926 hypothetical protein T15N24.50 - Arabidopsis thalian... 126 4e-28
emb|CAA21831.1| (AL033125) 1-evidence=predicted by content~1-met... 125 8e-28
gb|AAF45921.1| (AE003430) EG:EG0007.9 gene product [Drosophila m... 125 8e-28
gi|11499905 fmu and fmv protein [Archaeoglobus fulgidus] >gi|744... 123 3e-27
gi|6319447 Probable proliferating-cell nucleolar antigen (human ... 122 4e-27
pir||A72245 sun protein - Thermotoga maritima (strain MSB8) >gi|... 121 1e-26
pir||C81412 NOL1/NOP2/sun family protein Cj0636 [imported] - Cam... 121 1e-26
pir||A72478 probable fmu protein APE2465 - Aeropyrum pernix (str... 115 7e-25
gb|AAD22359.1|AC006592_16 (AC006592) unknown protein [Arabidopsi... 114 2e-24
dbj|BAB06226.1| (AP001515) unknown conserved protein [Bacillus h... 113 3e-24
emb|CAC05734.1| (AL391744) putative methyltransferase possibily ... 113 4e-24
sp|P94464|SUN_BACSU SUN PROTEIN >gi|7429452|pir||E69878 RNA-bind... 110 2e-23
sp|P44788|SUN_HAEIN SUN PROTEIN (FMU PROTEIN) >gi|1074459|pir||F... 104 1e-21
pir||B81093 fmu and fmv protein, probable NMB1351 [imported] - N... 104 2e-21
emb|CAA10711.1| (AJ132604) sunL protein [Lactococcus lactis] 102 5e-21
pir||F81848 SUN-family protein NMA1563 [imported] - Neisseria me... 101 9e-21
pir||G82372 sun protein VC0044 [imported] - Vibrio cholerae (gro... 101 1e-20
sp|P72943|SUN_SYNY3 SUN PROTEIN (FMU PROTEIN) >gi|7429453|pir||S... 100 2e-20
dbj|BAB01410.1| (AP000375) contains similarity to SUN and FMU pr... 100 3e-20
sp|P36929|SUN_ECOLI SUN PROTEIN (FMU PROTEIN) >gi|7445095|pir||D... 98 1e-19
emb|CAA54370.1| (X77091) fmv [Escherichia coli] 95 1e-18
gb|AAF51875.1| (AE003599) CG11109 gene product [Drosophila melan... 94 2e-18
dbj|BAA31227.1| (D86411) Fmv [Vibrio alginolyticus] 94 2e-18
pir||I40649 hypothetical protein 265 - Coxiella burnetii >gi|511... 94 3e-18
sp|P45679|SUN_COXBU SUN PROTEIN (FMU PROTEIN) 94 3e-18
gb|AAA58086.1| (U18997) we have one ORF, ECFMT has fmu and fmv [... 92 8e-18
pir||C72710 probable fmu protein APE1098 - Aeropyrum pernix (str... 89 5e-17
gb|AAK40701.1| Sun (fmu) protein (sun-1) [Sulfolobus solfataricus] 86 4e-16
gi|8922322 hypothetical protein FLJ10267 [Homo sapiens] >gi|7022... 83 3e-15
pir||F83643 conserved hypothetical protein PA0017 [imported] - P... 83 3e-15
pir||A82744 conserved hypothetical protein XF0928 [imported] - X... 81 1e-14
gi|11419358 hypothetical protein FLJ10267 [Homo sapiens] 79 7e-14
emb|CAB70100.1| (AL132949) contains similarity to Pfam domain: P... 79 7e-14
emb|CAB70101.1| (AL132949) contains similarity to Pfam domain: P... 79 7e-14
gb|AAF51412.1| (AE003587) CG4749 gene product [Drosophila melano... 75 8e-13
gb|AAK40477.1| Sun (fmu) protein (sun-2) [Sulfolobus solfataricus] 75 1e-12
gi|11416925 hypothetical protein FLJ20303 [Homo sapiens] 74 3e-12
gi|11545785 hypothetical protein FLJ22609 [Homo sapiens] >gi|104... 73 4e-12
pir||T06106 hypothetical protein T5J17.170 - Arabidopsis thalian... 73 6e-12
pir||B81236 16S RNA methyltransferase NMB0112 [imported] - Neiss... 71 2e-11
pir||G82009 SUN homolog NMA0162 [imported] - Neisseria meningiti... 71 2e-11
gb|AAF24826.1|AC007592_19 (AC007592) F12K11.10 [Arabidopsis thal... 70 3e-11
>pir||B75183 probable proliferating-cell nucleolar antigen p120 PAB1947 -
Pyrococcus abyssi (strain Orsay)
>gi|5458055|emb|CAB49545.1| (AJ248284)
proliferating-cell nucleolar antigen P120, putative
[Pyrococcus abyssi]
Length = 311
Score = 629 bits (1606), Expect = e-180
Identities = 311/311 (100%), Positives = 311/311 (100%)
Query: 1 MDYKEEFKKINKKLVERYSKLDDSEEFWAYLYKPLRPSIRINTLKGNLKEIKALLEEKFE 60
MDYKEEFKKINKKLVERYSKLDDSEEFWAYLYKPLRPSIRINTLKGNLKEIKALLEEKFE
Sbjct: 1 MDYKEEFKKINKKLVERYSKLDDSEEFWAYLYKPLRPSIRINTLKGNLKEIKALLEEKFE 60
Query: 61 LEPIPWTKGEGFYIKSYDVNYGQLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAA 120
LEPIPWTKGEGFYIKSYDVNYGQLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAA
Sbjct: 61 LEPIPWTKGEGFYIKSYDVNYGQLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAA 120
Query: 121 PGSKTTQMAQYMENEGCIIANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARYENTF 180
PGSKTTQMAQYMENEGCIIANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARYENTF
Sbjct: 121 PGSKTTQMAQYMENEGCIIANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARYENTF 180
Query: 181 DRVLLDAPCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCT 240
DRVLLDAPCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCT
Sbjct: 181 DRVLLDAPCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCT 240
Query: 241 VDPLENEEVVDFLLQKTDAKLEKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTE 300
VDPLENEEVVDFLLQKTDAKLEKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTE
Sbjct: 241 VDPLENEEVVDFLLQKTDAKLEKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTE 300
Query: 301 AFYIAKIRKPR 311
AFYIAKIRKPR
Sbjct: 301 AFYIAKIRKPR 311
>pir||G71030 probable nucleolar protein - Pyrococcus horikoshii
>gi|3257964|dbj|BAA30647.1| (AP000006) 312aa long
hypothetical nucleolar protein [Pyrococcus horikoshii]
Length = 312
Score = 570 bits (1453), Expect = e-162
Identities = 271/311 (87%), Positives = 300/311 (96%)
Query: 1 MDYKEEFKKINKKLVERYSKLDDSEEFWAYLYKPLRPSIRINTLKGNLKEIKALLEEKFE 60
MDYKEE KIN+KLVERYSKLDDSE+FWAYLYKPLRPSIRINTLKG L EIK LLEEKFE
Sbjct: 1 MDYKEELAKINRKLVERYSKLDDSEDFWAYLYKPLRPSIRINTLKGKLNEIKKLLEEKFE 60
Query: 61 LEPIPWTKGEGFYIKSYDVNYGQLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAA 120
LE IPWTKGEGFYI SY VNYG+LIEYSLGLIIPQEASSMIPPVVLDPKP E+ILDMAAA
Sbjct: 61 LERIPWTKGEGFYINSYSVNYGELIEYSLGLIIPQEASSMIPPVVLDPKPGELILDMAAA 120
Query: 121 PGSKTTQMAQYMENEGCIIANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARYENTF 180
PGSKTTQ+AQYMEN+GCIIANDAKRDRANILIANLTRAGVLIAKVTV+DGA++A+YE+TF
Sbjct: 121 PGSKTTQIAQYMENDGCIIANDAKRDRANILIANLTRAGVLIAKVTVRDGAHYAKYEDTF 180
Query: 181 DRVLLDAPCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCT 240
DR+LLDAPCSSVGMIRKNFKFA+TWS+GKVYYHSRLQK+LILAAY++LKPGGVLVYSTCT
Sbjct: 181 DRILLDAPCSSVGMIRKNFKFAKTWSLGKVYYHSRLQKKLILAAYRALKPGGVLVYSTCT 240
Query: 241 VDPLENEEVVDFLLQKTDAKLEKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTE 300
VDPLENEEVVD+LLQKTDAKL+K+ LP+K++EPV+EWEGR+YS+E++KTIRIHPQDNDTE
Sbjct: 241 VDPLENEEVVDYLLQKTDAKLKKINLPIKSTEPVLEWEGRRYSEELKKTIRIHPQDNDTE 300
Query: 301 AFYIAKIRKPR 311
AFYIAKI KP+
Sbjct: 301 AFYIAKIIKPK 311
>gi|11498459 proliferating-cell nucleolar antigen P120, putative [Archaeoglobus
fulgidus] >gi|7445110|pir||E69356 proliferating-cell
nucleolar antigen P120 homolog - Archaeoglobus fulgidus
>gi|2649749|gb|AAB90385.1| (AE001045) proliferating-cell
nucleolar antigen P120, putative [Archaeoglobus
fulgidus]
Length = 317
Score = 362 bits (919), Expect = 3e-99
Identities = 173/309 (55%), Positives = 241/309 (77%), Gaps = 4/309 (1%)
Query: 2 DYKEEFKKINKKLVERYSKLDDSEEFWAYLYKPLRPSIRINTLKGNLKEIKALLEEKFEL 61
+ KE F+ IN +L ER K+D S+EF+ Y+ KPLR S+R+NTLK + E+ L+E
Sbjct: 13 EIKEAFRLINPELYERLLKIDGSDEFFRYMVKPLRVSVRVNTLKAEVDEVVENLKELITG 72
Query: 62 EPIPWTKGEGFYIKSYDVNYGQLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAP 121
+PW + EGFY+ S D + ++ E+ LGLI QEA+SMIPP+V++ +P +LD+AA+P
Sbjct: 73 R-VPWCE-EGFYL-SID-EFSRIPEHQLGLIFSQEAASMIPPLVMELEPKMTVLDIAASP 128
Query: 122 GSKTTQMAQYMENEGCIIANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARYENTFD 181
G+KTTQ+AQY++NEGCI+AND K R NILI+NL R GVLIAKVTVKDG YF R+ N FD
Sbjct: 129 GAKTTQIAQYLQNEGCIVANDVKHSRINILISNLQRCGVLIAKVTVKDGRYFGRFRNRFD 188
Query: 182 RVLLDAPCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTV 241
VL+DAPCS++GMIRKN++ R W + Y S+LQK L++AAYK++KPGGV+VYSTCT+
Sbjct: 189 AVLVDAPCSNMGMIRKNYRNIRLWKMRDCYGLSKLQKSLLMAAYKAVKPGGVVVYSTCTL 248
Query: 242 DPLENEEVVDFLLQKTDAKLEKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEA 301
+P+ENEEVVD++L+ TDA++E+V LP+K EP +++G++YS+EVRK +R+HPQ +DTE
Sbjct: 249 EPIENEEVVDYILRNTDAEIEEVNLPVKGVEPFTKFDGKEYSEEVRKCLRLHPQSSDTEG 308
Query: 302 FYIAKIRKP 310
F++AK+RKP
Sbjct: 309 FFVAKLRKP 317
>pir||G75121 nucleolar protein PAB0523 - Pyrococcus abyssi (strain Orsay)
>gi|5458199|emb|CAB49688.1| (AJ248285) NUCLEOLAR PROTEIN
[Pyrococcus abyssi]
Length = 311
Score = 209 bits (527), Expect = 3e-53
Identities = 124/303 (40%), Positives = 177/303 (57%), Gaps = 9/303 (2%)
Query: 11 NKKLVERYSKL--DDSEEFWAYLYKPLRPSIRINTLKGNLKE-IKALLEEKFELEPIPWT 67
+K ERY +L + + + KPL RINTLK +++ +K L ++ F+ +PW
Sbjct: 13 SKPFAERYYQLWGERALRIAQAMEKPLPRCFRINTLKISVQNLVKRLNKKGFQFRRVPWA 72
Query: 68 KGEGFYIKSYDVNYGQLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQ 127
+ EGF + + EY GLI QEASSM PPV LDPKP E++ DMAAAPG KT+
Sbjct: 73 R-EGFCLTREPFSITSTPEYLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSY 131
Query: 128 MAQYMENEGCIIANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARYENTFDRVLLDA 187
+AQ MEN+G I A D DR NL+R GVL + Y + FD++LLDA
Sbjct: 132 LAQLMENKGVIYAFDVDEDRLKETRINLSRLGVLNVILFHSSSLYIDQLGIEFDKILLDA 191
Query: 188 PCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENE 247
PC+ G I KN + ++ + + LQ +L+ A + LKPGG+LVYSTC+++P ENE
Sbjct: 192 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMKLVEKALEVLKPGGILVYSTCSLEPEENE 251
Query: 248 EVVDFLLQKTDAKLEKVKLPLKTSEPVIEWE-GRKYSDEVRKTIRIHPQDNDTEAFYIAK 306
V+ ++L+ D +L LPLK EP + G + SDE++K R++P + T F++AK
Sbjct: 252 FVIQWVLENFDVEL----LPLKYGEPALTRPFGIELSDEIKKARRLYPDVHGTSGFFVAK 307
Query: 307 IRK 309
IRK
Sbjct: 308 IRK 310
>pir||H71009 probable proliferating-cell nucleolar protein p120 - Pyrococcus
horikoshii >gi|3257797|dbj|BAA30480.1| (AP000006) 315aa
long hypothetical proliferating-cell nucleolar protein
p120 [Pyrococcus horikoshii]
Length = 315
Score = 199 bits (501), Expect = 3e-50
Identities = 114/279 (40%), Positives = 164/279 (57%), Gaps = 7/279 (2%)
Query: 33 KPLRPSIRINTLKGNLKE-IKALLEEKFELEPIPWTKGEGFYIKSYDVNYGQLIEYSLGL 91
KPL R+NTLK ++++ +K L ++ F+ + +PW K EGF + + E+ GL
Sbjct: 41 KPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAK-EGFCLTREPFSITSTPEFLTGL 99
Query: 92 IIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRANIL 151
I QEASSM PPV LDPKP E++ DMAAAPG KT+ +AQ M N+G I A D +R
Sbjct: 100 IYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRET 159
Query: 152 IANLTRAGVLIAKVTVKDGAYFARYENTFDRVLLDAPCSSVGMIRKNFKFARTWSIGKVY 211
NL+R GVL + + FD++LLDAPC+ G I KN + ++ +
Sbjct: 160 RLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIK 219
Query: 212 YHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENEEVVDFLLQKTDAKLEKVKLPLKTS 271
+ LQ RL+ + LKPGG+LVYSTC+++P ENE V+ + L D +L LPLK
Sbjct: 220 FCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFDVEL----LPLKYG 275
Query: 272 EPVIEWE-GRKYSDEVRKTIRIHPQDNDTEAFYIAKIRK 309
EP + G + S+E++ R++P ++T F+IAKIRK
Sbjct: 276 EPALTNPFGIELSEEIKNARRLYPDVHETSGFFIAKIRK 314
>gb|AAK40591.1| Proliferating-cell nucleolar antigen p120 homolog [Sulfolobus
solfataricus]
Length = 339
Score = 176 bits (442), Expect = 3e-43
Identities = 106/304 (34%), Positives = 173/304 (56%), Gaps = 10/304 (3%)
Query: 14 LVERYSKL----DDSEEFWAYLYKPLRPSIRINTLKGNLKEIKALLEEK-FELEPIPWTK 68
++ERY + ++ EE+ PL+ SIR NTLK + K+++ ++ EK F LE + W +
Sbjct: 37 MIERYLNMFSTEEELEEYLNSCSFPLKKSIRCNTLKTDCKKLEEIMLEKGFVLEKVKWLQ 96
Query: 69 GEGFYIKSY--DVNYGQLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTT 126
G+ +K + G +EY +G Q +SM+P VL+P + +LDMAAAPG KTT
Sbjct: 97 -HGYVVKRTPPKPSLGSTLEYLMGYYHIQGLASMVPAYVLNPSYDDFVLDMAAAPGGKTT 155
Query: 127 QMAQYMENEGCIIANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARY-ENTFDRVLL 185
Q++Q M+N+G +IA + KR R L++N+ R G + D ++ FD++LL
Sbjct: 156 QLSQIMQNKGLVIAVEKKRSRIRALLSNVNRLGAENVVLIKTDALNLININKSQFDKILL 215
Query: 186 DAPCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLE 245
DAPCS G+I+K+ ++ + + LQ LI AY+ LK GG +VYSTC+V P E
Sbjct: 216 DAPCSGEGLIQKDPTRRYKTTMDDLRDFAHLQLSLIEIAYELLKKGGYIVYSTCSVAPEE 275
Query: 246 NEEVVDFLLQKTDAKLEKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYIA 305
+E +V+F +++ K V+ S IE+ ++S++V+ +R P TE F++
Sbjct: 276 DELIVNFAIEELGMKAMSVE-GYPASNGYIEYYTTRFSNDVKNCLRFFPHKQGTEGFFLC 334
Query: 306 KIRK 309
++K
Sbjct: 335 LLKK 338
>pir||A82193 Sun/nucleolar protein family protein VC1502 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9656005|gb|AAF94657.1| (AE004228) Sun/nucleolar
protein family protein [Vibrio cholerae]
Length = 503
Score = 175 bits (439), Expect = 6e-43
Identities = 112/292 (38%), Positives = 164/292 (55%), Gaps = 18/292 (6%)
Query: 26 EFWAYLYKPLRPSIRINTLKGNLKEI-KALLEEKFELEPIPWTKGEGFYIKSYD--VNYG 82
+F A +PLR SIR+NTLK ++ E + E++++L P+PW + GF+I + + V G
Sbjct: 57 DFIAACQRPLRKSIRVNTLKISVAEFCQRAAEKEWQLTPVPWCEN-GFWIDADESLVPLG 115
Query: 83 QLIEYSLGLIIPQEASSMIP--PVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIA 140
E+ GL QEASSM+P + + + +LDMAAAPGSKTTQMA M+N+G ++A
Sbjct: 116 NTAEHMAGLFYIQEASSMMPVSALFMGNAHYDSVLDMAAAPGSKTTQMAALMDNQGVLVA 175
Query: 141 NDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARY-ENTFDRVLLDAPCSSVGMIRKNF 199
N+ R +L AN+ R G+ ++ DG F + FD VL+DAPCS G IRK+
Sbjct: 176 NEFSASRVKVLHANIERCGIRNTALSNFDGCVFGGWLPERFDAVLIDAPCSGEGTIRKDP 235
Query: 200 KFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENEEVVDFLLQK--T 257
+ WS+ + + QK LI +A+++LK GG LVYSTCT+ EN++V L Q
Sbjct: 236 DAMKNWSLESIQSIANTQKALIESAFQALKVGGTLVYSTCTLSREENQQVCWHLKQTYGD 295
Query: 258 DAKLEKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYIAKIRK 309
E + + + + EG + I PQ D E F++AKIRK
Sbjct: 296 AVSFESLGNLFEHASLALTEEG---------FLHIFPQMYDCEGFFVAKIRK 338
>gi|11499621 proliferating-cell nucleolar antigen P120, putative [Archaeoglobus
fulgidus] >gi|7445096|pir||F69504 proliferating-cell
nucleolar antigen P120-like protein - Archaeoglobus
fulgidus >gi|2648496|gb|AAB89215.1| (AE000962)
proliferating-cell nucleolar antigen P120, putative
[Archaeoglobus fulgidus]
Length = 324
Score = 171 bits (429), Expect = 9e-42
Identities = 106/291 (36%), Positives = 163/291 (55%), Gaps = 13/291 (4%)
Query: 22 DDSEEFWAYLYKPLRPSIRINTLKGNLKEIKALLEEK-FELEP--IPWTKGEGFYIKSYD 78
D++E+ + + IRINTLK + K + LE + F+L+ +P+ F +
Sbjct: 35 DETEDIIRAFEEGIPKYIRINTLKIDEKGLLERLESRGFKLKKTEVPYC----FEVVEEP 90
Query: 79 VNYGQLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCI 138
+ G EY +G + SS IPP+ L+PKP EV++D+AA+PG KTT ++ MEN+G +
Sbjct: 91 YSIGATPEYLMGYYYVMDKSSCIPPLALEPKPGEVVVDLAASPGGKTTFLSMLMENKGAV 150
Query: 139 IANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARYENTFDRVLLDAPCSSVGMIRKN 198
IA + +++R LI N+ R G + V DG DRVLLDAPC+ G+I K+
Sbjct: 151 IAVEPQKERLQPLIDNINRMGAMNVAVINVDGRRVPAMGIKADRVLLDAPCTGEGIIHKD 210
Query: 199 FKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENEEVVDFLLQKTD 258
+ + S LQ+ L+LAA+ LK GGV+VYSTC++ P ENE VVDFLL++
Sbjct: 211 PSRKTDRGKEDILFCSSLQRELVLAAFDCLKEGGVMVYSTCSLTPEENEFVVDFLLERRK 270
Query: 259 AKLEKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYIAKIRK 309
+E++ + + + G K +EV K R +P + F++A+IRK
Sbjct: 271 GVVEEI----EWGDEALALPGVK--NEVSKARRFYPHRHQCSGFFVARIRK 315
>pir||A48998 nucleolar protein p120 - mouse (fragment)
Length = 783
Score = 171 bits (429), Expect = 9e-42
Identities = 112/303 (36%), Positives = 163/303 (52%), Gaps = 9/303 (2%)
Query: 13 KLVERYSKLDDSEEFWAYLYKPLRPSIRINTLKGNLKEI-KALLEEKFELEPI-PWTKGE 70
KL+E + L + EF P ++R NTLK +++ +AL+ L+P+ W+K
Sbjct: 233 KLMELFP-LSELIEFLEANEVPRPITLRTNTLKTRRRDLAQALINRGVNLDPLGKWSKS- 290
Query: 71 GFYIKSYDVNYGQLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQ 130
G + V G EY G + Q ASSM+P + L P+ E ILDM APG KT+ +AQ
Sbjct: 291 GLVVYDSSVPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQ 350
Query: 131 YMENEGCIIANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARYENTFDRVLLDAPCS 190
M+N G I+ANDA DR ++ NL R GV ++ DG F + FDRVLLDAPCS
Sbjct: 351 LMKNTGVILANDANADRLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGFDRVLLDAPCS 410
Query: 191 SVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSL----KPGGVLVYSTCTVDPLEN 246
G+I K+ + + LQK L+L+A S+ K GG LVY TC++ EN
Sbjct: 411 GTGVISKDPAVKTNKDEKDIQRCAHLQKELLLSAIDSVNAASKTGGYLVYCTCSITVEEN 470
Query: 247 EEVVDFLLQKTDAKLEKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYIAK 306
E VVD+ L+K + +L L E ++ R++ +R T R +P ++ + F+IAK
Sbjct: 471 EWVVDYALKKRNVRLVPTGLDF-GQEGFTRFQARRFHPTLRSTRRFYPHTHNMDGFFIAK 529
Query: 307 IRK 309
+K
Sbjct: 530 FKK 532
>gi|6324268 90-kDa protein, located in nucleolus, that is homologous to a human
proliferation-associated nucleolar protein, p120; Nop2p
[Saccharomyces cerevisiae]
>gi|730166|sp|P40991|NOP2_YEAST NUCLEOLAR PROTEIN NOP2
>gi|1078161|pir||A55188 nucleolar protein NOP2 - yeast
(Saccharomyces cerevisiae) >gi|576442|emb|CAA57979.1|
(X82656) Nop2p [Saccharomyces cerevisiae]
>gi|1098483|gb|AAA99650.1| (U12141) Ynl2428p
[Saccharomyces cerevisiae] >gi|1301934|emb|CAA95934.1|
(Z71337) ORF YNL061w [Saccharomyces cerevisiae]
>gi|1093321|prf||2103264A nuclear protein [Saccharomyces
cerevisiae]
Length = 618
Score = 170 bits (427), Expect = 2e-41
Identities = 116/306 (37%), Positives = 166/306 (53%), Gaps = 12/306 (3%)
Query: 12 KKLVERYSKLDDSEEFWAY-LYKPLRPSIRINTLKGNLKEI-KALLEEKFELEPI-PWTK 68
+KL +S + E F A + +P+ +IR NTLK +++ + L+ L+PI WTK
Sbjct: 247 EKLFNLFSPAEAMEFFEANEIARPI--TIRTNTLKTRRRDLAQTLVNRGVNLQPIGSWTK 304
Query: 69 GEGFYIKSYDVNYGQLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQM 128
G I V G EY G I Q ASS +P + LDP +E ILDMAAAPG KTT +
Sbjct: 305 -VGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKTTYI 363
Query: 129 AQYMENEGCIIANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARYENTFDRVLLDAP 188
+ M+N GC+ ANDA + R LIAN+ R G V D F + FDR+LLDAP
Sbjct: 364 SAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYDAREFPKVIGGFDRILLDAP 423
Query: 189 CSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSL----KPGGVLVYSTCTVDPL 244
CS G+I K+ + + LQK+L+L+A S+ K GGV+VYSTC+V
Sbjct: 424 CSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDCNSKHGGVIVYSTCSVAVE 483
Query: 245 ENEEVVDFLLQK-TDAKLEKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFY 303
E+E V+D+ L+K + KL L + E + G+K+ V+ R +P + + F+
Sbjct: 484 EDEAVIDYALRKRPNVKLVDTGLAI-GKEAFTSYRGKKFHPSVKLARRYYPHTYNVDGFF 542
Query: 304 IAKIRK 309
+AK +K
Sbjct: 543 VAKFQK 548
>emb|CAA58502.1| (X83512) Yna1p [Saccharomyces cerevisiae]
Length = 473
Score = 170 bits (427), Expect = 2e-41
Identities = 116/306 (37%), Positives = 166/306 (53%), Gaps = 12/306 (3%)
Query: 12 KKLVERYSKLDDSEEFWAY-LYKPLRPSIRINTLKGNLKEI-KALLEEKFELEPI-PWTK 68
+KL +S + E F A + +P+ +IR NTLK +++ + L+ L+PI WTK
Sbjct: 102 EKLFNLFSPAEAMEFFEANEIARPI--TIRTNTLKTRRRDLAQTLVNRGVNLQPIGSWTK 159
Query: 69 GEGFYIKSYDVNYGQLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQM 128
G I V G EY G I Q ASS +P + LDP +E ILDMAAAPG KTT +
Sbjct: 160 -VGLQIFDSQVPIGATPEYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKTTYI 218
Query: 129 AQYMENEGCIIANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARYENTFDRVLLDAP 188
+ M+N GC+ ANDA + R LIAN+ R G V D F + FDR+LLDAP
Sbjct: 219 SAMMKNTGCVFANDANKSRTKSLIANIHRLGCTNTIVCNYDAREFPKVIGGFDRILLDAP 278
Query: 189 CSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSL----KPGGVLVYSTCTVDPL 244
CS G+I K+ + + LQK+L+L+A S+ K GGV+VYSTC+V
Sbjct: 279 CSGTGVIGKDQSVKVSRTEKDFIQIPHLQKQLLLSAIDSVDCNSKHGGVIVYSTCSVAVE 338
Query: 245 ENEEVVDFLLQK-TDAKLEKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFY 303
E+E V+D+ L+K + KL L + E + G+K+ V+ R +P + + F+
Sbjct: 339 EDEAVIDYALRKRPNVKLVDTGLAI-GKEAFTSYRGKKFHPSVKLARRYYPHTYNVDGFF 397
Query: 304 IAKIRK 309
+AK +K
Sbjct: 398 VAKFQK 403
>pir||C64945 probable rRNA methylase yebU - Escherichia coli
>gi|1736482|dbj|BAA15648.1| (D90827) Proliferating-cell
nucleolar antigen P120 (Proliferation-associated
nucleolar protein P120). [Escherichia coli]
>gi|1788140|gb|AAC74905.1| (AE000278) putative nucleolar
proteins [Escherichia coli K12]
Length = 481
Score = 170 bits (427), Expect = 2e-41
Identities = 112/292 (38%), Positives = 163/292 (55%), Gaps = 15/292 (5%)
Query: 25 EEFWAYLYKPLRPSIRINTLKGNLKEIKALLEEK-FELEPIPWTKGEGFYIKSYDVN--- 80
++F A +PLR SIR+NTLK ++ + L + L PIPW + EGF+I+ + +
Sbjct: 29 DDFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPIPWCE-EGFWIERDNEDALP 87
Query: 81 YGQLIEYSLGLIIPQEASSMIPPVVL--DPKPSEVILDMAAAPGSKTTQMAQYMENEGCI 138
G E+ GL QEASSM+P L D + ++D+AAAPGSKTTQ++ M NEG I
Sbjct: 88 LGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAI 147
Query: 139 IANDAKRDRANILIANLTRAGVLIAKVTVKDGAYF-ARYENTFDRVLLDAPCSSVGMIRK 197
+AN+ R +L AN++R G+ +T DG F A FD +LLDAPCS G++RK
Sbjct: 148 LANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRK 207
Query: 198 NFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENEEVVDFLLQKT 257
+ + WS + Q+ LI +A+ +L+PGG LVYSTCT++ ENE V +L +
Sbjct: 208 DPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETY 267
Query: 258 DAKLEKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYIAKIRK 309
+E LPL P G + + + PQ D E F++A++RK
Sbjct: 268 PDAVE--FLPLGDLFP-----GANKALTEEGFLHVFPQIYDCEGFFVARLRK 312
>sp|P76273|YEBU_ECOLI HYPOTHETICAL 53.2 KD PROTEIN IN PRC-PRPA INTERGENIC REGION
Length = 479
Score = 170 bits (427), Expect = 2e-41
Identities = 112/292 (38%), Positives = 163/292 (55%), Gaps = 15/292 (5%)
Query: 25 EEFWAYLYKPLRPSIRINTLKGNLKEIKALLEEK-FELEPIPWTKGEGFYIKSYDVN--- 80
++F A +PLR SIR+NTLK ++ + L + L PIPW + EGF+I+ + +
Sbjct: 27 DDFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPIPWCE-EGFWIERDNEDALP 85
Query: 81 YGQLIEYSLGLIIPQEASSMIPPVVL--DPKPSEVILDMAAAPGSKTTQMAQYMENEGCI 138
G E+ GL QEASSM+P L D + ++D+AAAPGSKTTQ++ M NEG I
Sbjct: 86 LGSTAEHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAI 145
Query: 139 IANDAKRDRANILIANLTRAGVLIAKVTVKDGAYF-ARYENTFDRVLLDAPCSSVGMIRK 197
+AN+ R +L AN++R G+ +T DG F A FD +LLDAPCS G++RK
Sbjct: 146 LANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAPCSGEGVVRK 205
Query: 198 NFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENEEVVDFLLQKT 257
+ + WS + Q+ LI +A+ +L+PGG LVYSTCT++ ENE V +L +
Sbjct: 206 DPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKETY 265
Query: 258 DAKLEKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYIAKIRK 309
+E LPL P G + + + PQ D E F++A++RK
Sbjct: 266 PDAVE--FLPLGDLFP-----GANKALTEEGFLHVFPQIYDCEGFFVARLRK 310
>gi|5453792 nucleolar protein 1 (120kD) [Homo sapiens]
>gi|1171747|sp|P46087|NOL1_HUMAN PROLIFERATING-CELL
NUCLEOLAR ANTIGEN P120 (PROLIFERATION-ASSOCIATED
NUCLEOLAR PROTEIN P120) >gi|482505|pir||A48168
proliferating-cell nucleolar antigen P120 - human
>gi|287723|emb|CAA39119.1| (X55504) P120 antigen [Homo
sapiens]
Length = 855
Score = 169 bits (424), Expect = 4e-41
Identities = 109/295 (36%), Positives = 157/295 (52%), Gaps = 8/295 (2%)
Query: 21 LDDSEEFWAYLYKPLRPSIRINTLKGNLKEI-KALLEEKFELEPI-PWTKGEGFYIKSYD 78
L + EF P ++R NTLK +++ +AL+ L+P+ W+K G +
Sbjct: 294 LSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSK-TGLVVYDSS 352
Query: 79 VNYGQLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCI 138
V G EY G + Q ASSM+P + L P+ E ILDM APG KT+ MAQ M+N G I
Sbjct: 353 VPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVI 412
Query: 139 IANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARYENTFDRVLLDAPCSSVGMIRKN 198
+ANDA +R ++ NL R GV ++ DG F + FDRVLLDAPCS G+I K+
Sbjct: 413 LANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGFDRVLLDAPCSGTGVISKD 472
Query: 199 FKFARTWSIGKVYYHSRLQKRLILAAYKSL----KPGGVLVYSTCTVDPLENEEVVDFLL 254
+ + LQK L+L+A S+ K GG LVY TC++ ENE VVD+ L
Sbjct: 473 PAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYAL 532
Query: 255 QKTDAKLEKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYIAKIRK 309
+K + +L L E + R++ +R T R +P ++ + F+IAK +K
Sbjct: 533 KKRNVRLVPTGLDF-GQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKK 586
>gi|11436286 nucleolar protein 1 (120kD) [Homo sapiens]
Length = 812
Score = 169 bits (424), Expect = 4e-41
Identities = 109/295 (36%), Positives = 157/295 (52%), Gaps = 8/295 (2%)
Query: 21 LDDSEEFWAYLYKPLRPSIRINTLKGNLKEI-KALLEEKFELEPI-PWTKGEGFYIKSYD 78
L + EF P ++R NTLK +++ +AL+ L+P+ W+K G +
Sbjct: 294 LSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSK-TGLVVYDSS 352
Query: 79 VNYGQLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCI 138
V G EY G + Q ASSM+P + L P+ E ILDM APG KT+ MAQ M+N G I
Sbjct: 353 VPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVI 412
Query: 139 IANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARYENTFDRVLLDAPCSSVGMIRKN 198
+ANDA +R ++ NL R GV ++ DG F + FDRVLLDAPCS G+I K+
Sbjct: 413 LANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGFDRVLLDAPCSGTGVISKD 472
Query: 199 FKFARTWSIGKVYYHSRLQKRLILAAYKSL----KPGGVLVYSTCTVDPLENEEVVDFLL 254
+ + LQK L+L+A S+ K GG LVY TC++ ENE VVD+ L
Sbjct: 473 PAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYAL 532
Query: 255 QKTDAKLEKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYIAKIRK 309
+K + +L L E + R++ +R T R +P ++ + F+IAK +K
Sbjct: 533 KKRNVRLVPTGLDF-GQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKK 586
>gb|AAA36398.1| (M32110) proliferating cell nuclear protein P120 [Homo sapiens]
Length = 869
Score = 169 bits (424), Expect = 4e-41
Identities = 109/295 (36%), Positives = 157/295 (52%), Gaps = 8/295 (2%)
Query: 21 LDDSEEFWAYLYKPLRPSIRINTLKGNLKEI-KALLEEKFELEPI-PWTKGEGFYIKSYD 78
L + EF P ++R NTLK +++ +AL+ L+P+ W+K G +
Sbjct: 308 LSELVEFLEANEVPRPVTLRTNTLKTRRRDLAQALINRGVNLDPLGKWSK-TGLVVYDSS 366
Query: 79 VNYGQLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCI 138
V G EY G + Q ASSM+P + L P+ E ILDM APG KT+ MAQ M+N G I
Sbjct: 367 VPIGATPEYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVI 426
Query: 139 IANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARYENTFDRVLLDAPCSSVGMIRKN 198
+ANDA +R ++ NL R GV ++ DG F + FDRVLLDAPCS G+I K+
Sbjct: 427 LANDANAERLKSVVGNLHRLGVTNTIISHYDGRQFPKVVGGFDRVLLDAPCSGTGVISKD 486
Query: 199 FKFARTWSIGKVYYHSRLQKRLILAAYKSL----KPGGVLVYSTCTVDPLENEEVVDFLL 254
+ + LQK L+L+A S+ K GG LVY TC++ ENE VVD+ L
Sbjct: 487 PAVKTNKDEKDILRCAHLQKELLLSAIDSVNATSKTGGYLVYCTCSITVEENEWVVDYAL 546
Query: 255 QKTDAKLEKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYIAKIRK 309
+K + +L L E + R++ +R T R +P ++ + F+IAK +K
Sbjct: 547 KKRNVRLVPTGLDF-GQEGFTRFRERRFHPSLRSTRRFYPHTHNMDGFFIAKFKK 600
>gb|AAF58504.1| (AE003822) CG8545 gene product [Drosophila melanogaster]
Length = 857
Score = 168 bits (422), Expect = 6e-41
Identities = 110/308 (35%), Positives = 166/308 (53%), Gaps = 11/308 (3%)
Query: 11 NKKLVERYSKLDDSEEFWAYLYKP--LRP-SIRINTLKGNLKEIK-ALLEEKFELEPI-P 65
N+ L+E+ + E YL RP +IR NTLK +++ AL+ L+P+
Sbjct: 298 NEFLMEKLMDMLPLTELMEYLEASEIARPLTIRTNTLKTRRRDLAGALINRGVNLDPLGK 357
Query: 66 WTKGEGFYIKSYDVNYGQLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKT 125
WTK G + + V G EY G + Q ASS++P + L P+ +E ILDM +APG K
Sbjct: 358 WTK-VGLVVFNSQVPLGATPEYLAGHYMIQGASSLLPVMALAPQENERILDMCSAPGGKG 416
Query: 126 TQMAQYMENEGCIIANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARYENTFDRVLL 185
+ +A M+N G + AND+ RDR ++AN R G++ A V+ +DG F FDRVLL
Sbjct: 417 SHIASIMKNTGVLFANDSNRDRIKAIVANFHRLGIVNAVVSCEDGTKFRNIMTGFDRVLL 476
Query: 186 DAPCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAY----KSLKPGGVLVYSTCTV 241
DAPC+ G++ K+ T S V LQ++L+L A GG +VYSTC+V
Sbjct: 477 DAPCTGTGVVSKDPSVKTTKSEVDVQRCYNLQRKLLLTAIDCTDAKSSTGGYIVYSTCSV 536
Query: 242 DPLENEEVVDFLLQKTDAKLEKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEA 301
P ENE V+D+ L+K + KL L E ++ ++ + T R +P ++ +
Sbjct: 537 LPEENEWVIDYALKKRNVKLVPTGLDFGV-EGFTKFRQHRFHPSLNLTKRYYPHTHNMDG 595
Query: 302 FYIAKIRK 309
FY+AK++K
Sbjct: 596 FYVAKLKK 603
>dbj|BAB08657.1| (AB026659) nucleolar protein-like [Arabidopsis thaliana]
Length = 682
Score = 164 bits (411), Expect = 1e-39
Identities = 107/286 (37%), Positives = 155/286 (53%), Gaps = 9/286 (3%)
Query: 32 YKPLRP-SIRINTLKGNLKEIK-ALLEEKFELEPIPWTKGEGFYIKSYDVNYGQLIEYSL 89
++ RP SIR NTLK +++ LL L+P+ G I V G EY
Sbjct: 279 FEKQRPTSIRTNTLKTRRRDLADVLLNRGVNLDPLSKWSKVGLVIYDSQVPIGATPEYLA 338
Query: 90 GLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRAN 149
G + Q ASS +P + L P+ +E I+D+AAAPG KTT +A M+N G I AN+ K R
Sbjct: 339 GYYMLQGASSFLPVMALAPRENERIVDVAAAPGGKTTYIAALMKNTGLIYANEMKVPRLK 398
Query: 150 ILIANLTRAGVLIAKVTVKDGAYFARY--ENTFDRVLLDAPCSSVGMIRKNFKFARTWSI 207
L ANL R GV V DG + +NT DRVLLDAPCS G+I K+ T ++
Sbjct: 399 SLTANLHRMGVTNTIVCNYDGRELPKVLGQNTVDRVLLDAPCSGTGIISKDESVKITKTM 458
Query: 208 GKVYYHSRLQKRLILAAYKSL----KPGGVLVYSTCTVDPLENEEVVDFLLQKTDAKLEK 263
++ + LQK+L+LAA + K GG +VYSTC++ ENE V+D+ L+K D KL
Sbjct: 459 DEIKKFAHLQKQLLLAAIDMVDANSKTGGYIVYSTCSIMVTENEAVIDYALKKRDVKLVT 518
Query: 264 VKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYIAKIRK 309
L + + ++ + KT R +P ++ + F++AK++K
Sbjct: 519 CGLDF-GRKGFTRFREHRFQPSLDKTRRFYPHVHNMDGFFVAKLKK 563
>gb|AAG19031.1| (AE005002) proliferating-cell nucleolar antigen; Cna [Halobacterium
sp. NRC-1]
Length = 303
Score = 162 bits (405), Expect = 6e-39
Identities = 104/293 (35%), Positives = 149/293 (50%), Gaps = 10/293 (3%)
Query: 21 LDDSEEFWAYLYKPLRPSIRINTLKGNL-KEIKALLEEKFELEPIPWTKGEGFYIKSYDV 79
+DD E F A +PL ++R+N L + ++AL E ++ W G + D
Sbjct: 11 IDDFEGFLAACERPLPTTVRVNPLAVTPDRAVEALAAEGVAVDRREWHPG----VLEVDT 66
Query: 80 NY-GQLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCI 138
N G Y G + QE S +PP VLDP+P +V+ D AAPG KT Q+A ++++G +
Sbjct: 67 NKPGNTWPYVHGWVHGQEEVSCVPPRVLDPEPGDVVWDACAAPGGKTAQIAAEIDDDGLV 126
Query: 139 IANDAKRDRANILIANLTRAGVLIAKVTVKDG--AYFARYENT--FDRVLLDAPCSSVGM 194
+AND R + L N R GV A VT D A + + D L+DAPCS G
Sbjct: 127 VANDDNLGRLSALRGNCDRLGVTSAAVTNTDARRATLDAFPDVAAVDAALVDAPCSCEGT 186
Query: 195 IRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENEEVVDFLL 254
IRKN RLQ ++ A +PGG +VYSTCT P ENE VVD +L
Sbjct: 187 IRKNADALDGAGASASRSLGRLQADILARAVALTRPGGTVVYSTCTFAPEENEAVVDEVL 246
Query: 255 QKTDAKLEKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYIAKI 307
+TD++L + + L ++ + EW Y D + + R +P NDT F+ AK+
Sbjct: 247 GRTDSRLVEFDVGLASAPGLTEWGDASYDDSLARAQRYYPHHNDTGGFFAAKL 299
>pir||T40814 probable nucleolar protein-NOL1-NOP2-sun family - fission yeast
(Schizosaccharomyces pombe) >gi|3810844|emb|CAA21805.1|
(AL032684) putative nucleolar protein; NOL1/NOP2/sun
family [Schizosaccharomyces pombe]
Length = 608
Score = 157 bits (393), Expect = 2e-37
Identities = 112/306 (36%), Positives = 165/306 (53%), Gaps = 11/306 (3%)
Query: 12 KKLVERYSKLDDSEEFWAYLYKPLRPSIRINTLKGNLKEI-KALLEEKFELEPI-PWTKG 69
+KL E +S + ++ EF+ P +IR NTLK +E+ +AL+ LEPI W+K
Sbjct: 241 EKLFELFS-VSEAVEFFEANEMPRPVTIRTNTLKTQRRELAQALINRGVNLEPIGKWSK- 298
Query: 70 EGFYIKSYDVNYGQLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMA 129
G + V G EY G I Q ASS +P + L P+P+E ILDM++APG K T +A
Sbjct: 299 VGLQVFESQVPIGATPEYLAGHYILQAASSFLPVMALAPQPNERILDMSSAPGGKVTYVA 358
Query: 130 QYMENEGCIIANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFA-RYENTFDRVLLDAP 188
+N G I AND+ + R L AN+ R GV A V DG F FDRVLLDAP
Sbjct: 359 ALQKNTGIIFANDSNKARTKALSANIHRLGVRNAIVCNYDGRKFPNEVIGGFDRVLLDAP 418
Query: 189 CSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSL----KPGGVLVYSTCTVDPL 244
CS G+I K+ S S LQ++L+L+A S+ K GG +VYSTC++
Sbjct: 419 CSGTGVIYKDQSVKTNKSERDFDTLSHLQRQLLLSAIDSVNADSKTGGFIVYSTCSITVD 478
Query: 245 ENEEVVDFLLQK-TDAKLEKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFY 303
E+E V+ + L+K + KL L E + +++ ++ T R +P ++ + F+
Sbjct: 479 EDEAVIQYALKKRPNVKLVSTGLEF-GREGFTRFREKRFHPSLKLTRRYYPHVHNIDGFF 537
Query: 304 IAKIRK 309
+AK++K
Sbjct: 538 VAKLKK 543
>sp|Q60343|Y026_METJA HYPOTHETICAL PROTEIN MJ0026 >gi|2127710|pir||B64303 120K
proliferating-cell nucleolar antigen homolog -
Methanococcus jannaschii >gi|1592257|gb|AAB98007.1|
(U67461) proliferating-cell nucleolar antigen,
FMU/NOL1/NOP2 family [Methanococcus jannaschii]
Length = 274
Score = 154 bits (386), Expect = 1e-36
Identities = 107/277 (38%), Positives = 151/277 (53%), Gaps = 22/277 (7%)
Query: 39 IRINTLKGNLKEIKALLEEKFELEPIPWTKGEGFYIKSYDVNYGQLIEYSLGLIIPQEAS 98
IR+NTLK N + +K LE K + + F +K + G EY G +PQ S
Sbjct: 13 IRVNTLKINPEVLKKRLENKGVVLEKTFLD-YAFEVKKSPFSIGSTPEYLFGYYMPQSIS 71
Query: 99 SMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRANILIANLTRA 158
SMIPP+VL+P+ + ILDM AAPG KTT +AQ M+N+G I+A + + R L +N+ R
Sbjct: 72 SMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRM 131
Query: 159 GVLIAKVTVKD----GAYFARYENTFDRVLLDAPCSSVGMIRKNFKFARTWSIGKVYYHS 214
GVL + D Y + E FD++LLDAPCS + KN R S + Y S
Sbjct: 132 GVLNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKN----RNVSEEDIKYCS 187
Query: 215 RLQKRLILAAYKSLKPGGVLVYSTCTVDPLENEEVVDFLLQK-TDAKLEKVKLPLKTSEP 273
QK LI LK G LVYSTC+++ ENEEV+ ++LQK D +L +K
Sbjct: 188 LRQKELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYILQKRNDVELIIIK-------- 239
Query: 274 VIEWEGRKYSD-EVRKTIRIHPQDNDTEAFYIAKIRK 309
E++G + ++ T+R+ P + E F+IAK+RK
Sbjct: 240 ANEFKGINIKEGYIKGTLRVFPPN---EPFFIAKLRK 273
>pir||T33803 hypothetical protein W07E6.1 - Caenorhabditis elegans (fragment)
>gi|3886025|gb|AAC78177.1| (AF106576) similar to the
nucleolar protein NOF1/NOP2 family [Caenorhabditis
elegans]
Length = 645
Score = 150 bits (376), Expect = 2e-35
Identities = 100/283 (35%), Positives = 150/283 (52%), Gaps = 9/283 (3%)
Query: 34 PLRPSIRINTLKGNLKEI-KALLEEKFELEPIP-WTKGEGFYIKSYDVNYGQLIEYSLGL 91
P +IR N+LK +++ K L+ ++P WTK G + V G EY G
Sbjct: 228 PRPVTIRANSLKVKRRDLAKNLINRGMNVDPAADWTK-VGLVVYDSQVPVGATPEYLAGH 286
Query: 92 IIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRANIL 151
+ Q +S++P + L P+P + +LDM +APG KT+ +A M+N G + ANDA R +
Sbjct: 287 YMIQGLNSLLPVMALAPQPGDRVLDMCSAPGGKTSHIAALMKNSGVLFANDANFTRCRAI 346
Query: 152 IANLTRAGVLIAKVTVKDGAYFARYE-NTFDRVLLDAPCSSVGMIRKNFKFARTWSIGKV 210
I NL R GV V G F++ N FDR+LLDAPCS G+I K+ + V
Sbjct: 347 IGNLHRLGVNNTVVCNLGGEEFSKIRPNGFDRILLDAPCSGTGVIWKDQSVKTSKDSQDV 406
Query: 211 YYHSRLQKRLILAAYKSLKP----GGVLVYSTCTVDPLENEEVVDFLLQKTDAKLEKVKL 266
+Q++LIL+A SL GG LVYSTC+V ENE VV+FLL++ +L L
Sbjct: 407 QRRHTMQRQLILSALDSLDANSPNGGYLVYSTCSVLVEENEAVVNFLLERRHCELVPTGL 466
Query: 267 PLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYIAKIRK 309
+ + + ++ + T R +P ++ + FY+AKI+K
Sbjct: 467 SIGV-DGYTRFRDYRFHPSLSMTKRYYPHVHNIDGFYVAKIKK 508
>pir||C72748 probable sun protein APE0514 - Aeropyrum pernix (strain K1)
>gi|5104163|dbj|BAA79479.1| (AP000059) 352aa long
hypothetical sun protein [Aeropyrum pernix]
Length = 352
Score = 144 bits (359), Expect = 1e-33
Identities = 98/303 (32%), Positives = 157/303 (51%), Gaps = 9/303 (2%)
Query: 14 LVERYSKL---DDSEEFWAYLYKPLRPSIRINTLKGNLKEIKALLEEK-FELEPIPWTKG 69
LVE+Y ++ +++ E A+ KPL +IR N E++++L +K F + IPW
Sbjct: 50 LVEKYIQILGEEEARELIAWNDKPLPETIRCNDFLIPCSELESMLSQKGFLVSRIPWLP- 108
Query: 70 EGFYIKSYDVNYGQLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMA 129
G + + G EY GL Q+ SM+ +L +P E +LDMAAAPG K+T +
Sbjct: 109 HGIEVLEQPIRVGATHEYMQGLYYIQDPGSMLVAYLLGVEPGETVLDMAAAPGGKSTHIQ 168
Query: 130 QYMENEGCIIANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARYENT--FDRVLLDA 187
Q + ++A D R R L +++ R G D R T DRV+LDA
Sbjct: 169 QLSRDSTILVAVDISRRRMRALRSHMQRMGFRSYVAVRADSRLLPRIAGTGWADRVMLDA 228
Query: 188 PCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENE 247
P + G+IRK+ + R+ S V LQ L+ A +PG ++Y+ C+ P E E
Sbjct: 229 PSTGEGIIRKDPERRRSRSQADVLRIHYLQLELLYTAVDLARPGAPILYAACSTSPEEGE 288
Query: 248 EVVDFLLQ-KTDAKLEKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYIAK 306
VV LL+ ++D ++E+++ P+ S V + G S E R+ +R+ PQ + TE F+I +
Sbjct: 289 LVVSRLLELRSDVEVERLESPV-GSPGVDSYLGVDISGEARRCLRLWPQRHGTEGFFICR 347
Query: 307 IRK 309
+R+
Sbjct: 348 VRR 350
>pir||G75137 sun protein (fmu protein) PAB2390 - Pyrococcus abyssi (strain
Orsay) >gi|5458327|emb|CAB49816.1| (AJ248285) SUN
PROTEIN (FMU PROTEIN) [Pyrococcus abyssi]
Length = 450
Score = 143 bits (356), Expect = 3e-33
Identities = 95/281 (33%), Positives = 148/281 (51%), Gaps = 18/281 (6%)
Query: 33 KPLRPSIRINTLKGNLKEIKALLEE---KFELEPIPWTKGEGFYIKSYDVNYGQLIEYSL 89
+P R +R+NTLK ++ +++ LEE + L P+ + + Y+ +L +
Sbjct: 185 RPQRYYVRVNTLKADIDKVRRYLEENGVRVALTPVD----DVLKVLDYEKPVTRLEWHRK 240
Query: 90 GLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRAN 149
G + Q+ +S VL+P+P E +LD+AAAPGSKT A MEN+G I+A D DR
Sbjct: 241 GYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHAAALMENKGEIVAVDYSYDRLM 300
Query: 150 ILIANLTRAGVLIAKVTVKDGAYFARYENTFDRVLLDAPCSSVGMIRKNFKFARTWSIGK 209
+ + R GV K+ DG F E F++++LDAPCSS G R+ + + K
Sbjct: 301 KMKERMKRLGVKNVKLVHADGQSFIDREG-FEKIILDAPCSSSGTYRQFPEVKWRFDEEK 359
Query: 210 VYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENEEVVDFLLQKTDAKLEKVKLPLK 269
+ +Q+ ++L AY++L+ GG + YSTC++ ENEE V F L+K E V P
Sbjct: 360 IKRVISVQRNMLLNAYRNLRSGGEMTYSTCSIRIDENEENVIFALEK---GFEIVDYP-- 414
Query: 270 TSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYIAKIRKP 310
EW + + + K R +D +F+IAK+RKP
Sbjct: 415 -----FEWGDKGFLEIGEKVFRAWTHKHDCNSFFIAKLRKP 450
>pir||G71135 probable fmu protein - Pyrococcus horikoshii
>gi|3257262|dbj|BAA29945.1| (AP000003) 450aa long
hypothetical fmu protein [Pyrococcus horikoshii]
Length = 450
Score = 142 bits (354), Expect = 6e-33
Identities = 108/308 (35%), Positives = 162/308 (52%), Gaps = 28/308 (9%)
Query: 14 LVERYSKL--DDSEEFWAYLYKPLR-PSIRINTLKGNLKEIKALLEEK----FELEPIPW 66
L+ER + D++E+F+ + K SIR+NTLK N++E+ LEE E +P
Sbjct: 161 LIERVKGILGDETEDFFRSVNKRHEWISIRVNTLKANVEEVIGELEEDGVEVVRSERVPT 220
Query: 67 T-KGEGFYIKSYDVNYGQLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKT 125
K +G Y N+ ++ G II QE +S + +VLDPKP E ++D+AAAPG KT
Sbjct: 221 ILKIKGPY------NFDTSSAFNEGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKT 274
Query: 126 TQMAQYMENEGCIIANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARY--ENTFDRV 183
T +A+ M+N+G I A D + R L + R G+ I K VKD E D+V
Sbjct: 275 THLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKV 334
Query: 184 LLDAPCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDP 243
LLDAPC+S G I KN + K+ S+LQ+ L+ +A + +KPGG L+Y+TC++
Sbjct: 335 LLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFK 394
Query: 244 LENEEVVDFLLQKTDAKLEKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFY 303
ENE+ + + L + E +PLK+ EG T+R P + T F+
Sbjct: 395 EENEKNIRWFL---NVHPEFKLVPLKSPYDPGFLEG---------TMRAWPHRHSTIGFF 442
Query: 304 IAKIRKPR 311
A + K +
Sbjct: 443 YALLEKSK 450
>pir||C71102 probable fmu protein - Pyrococcus horikoshii
>gi|3257494|dbj|BAA30177.1| (AP000004) 450aa long
hypothetical fmu protein [Pyrococcus horikoshii]
Length = 450
Score = 142 bits (354), Expect = 6e-33
Identities = 102/302 (33%), Positives = 154/302 (50%), Gaps = 21/302 (6%)
Query: 15 VERYSKLDDSEEFWAYLYKPLRPS---IRINTLKGNLKEIKALLEE---KFELEPIPWTK 68
VE KL +E L LRP IR+NTLK ++ +K LEE + L P+
Sbjct: 164 VEYVVKLLGYDETVRLLLSNLRPQRYYIRVNTLKVDVDRVKRYLEENGVRVSLTPVD--- 220
Query: 69 GEGFYIKSYDVNYGQLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQM 128
+ + Y+ +L Y G + Q+ +S VL+P+P E +LD+AAAPGSKT
Sbjct: 221 -DVLKVLEYEKPVTKLEWYRKGYFVIQDLASAYVAHVLNPEPGERVLDLAAAPGSKTFHA 279
Query: 129 AQYMENEGCIIANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARYENTFDRVLLDAP 188
A MEN G I+A D DR + + + GV K+ DG + E FD+++LDAP
Sbjct: 280 AALMENRGEIVAVDYSYDRLIKMRERMKKLGVKNVKLVHADGQSYTEKEK-FDKIILDAP 338
Query: 189 CSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENEE 248
CSS G R+ + ++ K+ +Q+ +++ AY++L GG + YSTC++ ENE+
Sbjct: 339 CSSSGTYRQFPEVKWRFNEEKIKRVISVQRNMLINAYRNLAGGGEMTYSTCSIRIDENEQ 398
Query: 249 VVDFLLQKTDAKLEKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYIAKIR 308
V F ++K LE V P EW + + + K R +D +F+IAK+R
Sbjct: 399 NVLFAIEK---GLELVDYP-------FEWGDKGFLEIGDKVFRTWTHKHDCNSFFIAKLR 448
Query: 309 KP 310
KP
Sbjct: 449 KP 450
>pir||D75033 probable proliferating-cell nucleolar antigen p120 PAB0830 -
Pyrococcus abyssi (strain Orsay)
>gi|5458674|emb|CAB50161.1| (AJ248287)
proliferating-cell nucleolar antigen P120, putative
[Pyrococcus abyssi]
Length = 449
Score = 142 bits (354), Expect = 6e-33
Identities = 106/306 (34%), Positives = 161/306 (51%), Gaps = 30/306 (9%)
Query: 15 VERYSKL--DDSEEFWAYLYKPLR-PSIRINTLKGNLKEIKALLE----EKFELEPIPWT 67
+ER K+ +++EEF+ + + S+R+NTLK N++E+ L E E +P
Sbjct: 162 IERVRKILGNETEEFFRAVNERQEWISVRVNTLKANVEEVIEELRNDGVEVVRSERVPTI 221
Query: 68 -KGEGFYIKSYDVNYGQLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTT 126
K +G Y N+ ++ G II QE +S + ++L+P+P EVI+D+AAAPG KTT
Sbjct: 222 LKIKGPY------NFDSSKAFNKGKIIVQEEASAVASLILNPQPGEVIVDLAAAPGGKTT 275
Query: 127 QMAQYMENEGCIIANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARY--ENTFDRVL 184
+A+ M+N+G I A D + R L + R G+ I K +KDG E DRVL
Sbjct: 276 HLAELMKNKGKIYAFDIDKTRMKRLKEFVNRMGIKIVKPIIKDGRKAPEILGEEIADRVL 335
Query: 185 LDAPCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPL 244
LDAPC+S G I KN + K+ ++LQ+ L+ +A K +KPGG+L+Y+TC++
Sbjct: 336 LDAPCTSSGTIGKNPELRWRLRESKIKEMAQLQRELLESAAKLVKPGGLLLYTTCSLFTE 395
Query: 245 ENEEVVD-FLLQKTDAKLEKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFY 303
ENEE V FL + KL + P + T+R P + T F+
Sbjct: 396 ENEENVKWFLNNHQEFKLVHLNSPYDPG-------------FLEGTMRAWPHRHSTIGFF 442
Query: 304 IAKIRK 309
A +RK
Sbjct: 443 YALLRK 448
>gb|AAF14354.1|AF113138_1 (AF113138) nucleolar protein Nop2 [Eremothecium gossypii]
Length = 240
Score = 138 bits (345), Expect = 7e-32
Identities = 85/208 (40%), Positives = 116/208 (54%), Gaps = 6/208 (2%)
Query: 107 DPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRANILIANLTRAGVLIAKVT 166
DP +E ILDMAAAPG KTT ++ M+N GC+ ANDA + R LIAN+ R G V
Sbjct: 1 DPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANKARTKSLIANIHRLGCTNTIVC 60
Query: 167 VKDGAYFARYENTFDRVLLDAPCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYK 226
D F + FDR+LLDAPCS G+I K+ + LQK+LIL+A
Sbjct: 61 NYDAREFPKVIGGFDRILLDAPCSGTGVIGKDQSVKVNRTEKDFMQIPHLQKQLILSAID 120
Query: 227 SL----KPGGVLVYSTCTVDPLENEEVVDFLLQK-TDAKLEKVKLPLKTSEPVIEWEGRK 281
S+ K GGV+VYSTC+V ENE VVD+ L+K + KL + L + E + G+K
Sbjct: 121 SVDSNSKHGGVIVYSTCSVAVEENEAVVDYALRKRPNVKLVETGLAI-GKEGSTSYRGKK 179
Query: 282 YSDEVRKTIRIHPQDNDTEAFYIAKIRK 309
+ T R +P + + F++AK +K
Sbjct: 180 FHPHYHLTRRYYPHTYNVDGFFVAKFQK 207
>pir||A75030 probable proliferating-cell nucleolar antigen p120 PAB1173 -
Pyrococcus abyssi (strain Orsay)
>gi|5459193|emb|CAB50679.1| (AJ248288)
proliferating-cell nucleolar antigen P120, putative
[Pyrococcus abyssi]
Length = 385
Score = 134 bits (335), Expect = 1e-30
Identities = 90/229 (39%), Positives = 126/229 (54%), Gaps = 15/229 (6%)
Query: 83 QLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIAND 142
+L + G PQ SM+ VL+PK E+I+DMAAAPG KTT +AQ ++N G IIA D
Sbjct: 171 ELKSFEKGYFYPQSLPSMVATRVLEPKEDELIIDMAAAPGGKTTHIAQLLQNRGEIIAID 230
Query: 143 AKRDRANILIANLTRAGVLIAKVTVKDGAYFARYENTFDRVLLDAPCSSVGMIRKNFKFA 202
++R + NL R GV K+ D D++LLDAPC+++G +R
Sbjct: 231 KSKNRLKKMEENLRRLGVKNVKLIQMDARNLPDLGLKADKILLDAPCTALG-VRPKLWEE 289
Query: 203 RTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENEEVVDFLLQKTDAKLE 262
RT + +R Q+ I AA KSL+ GGVLVYSTCT+ ENE V F+L+K KLE
Sbjct: 290 RTPK--HIEATARYQRAFIWAAIKSLRKGGVLVYSTCTLSYEENEGNVKFMLKK-GMKLE 346
Query: 263 KVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYIAKIRKPR 311
++ + P I + K R +P ++T+ F+IAK+RK R
Sbjct: 347 DQQIFI--GSPGIGLD---------KVQRFYPHKHNTQGFFIAKLRKVR 384
>pir||G71215 probable nucleolar protein - Pyrococcus horikoshii
>gi|3258435|dbj|BAA31118.1| (AP000007) 389aa long
hypothetical nucleolar protein [Pyrococcus horikoshii]
Length = 389
Score = 132 bits (330), Expect = 4e-30
Identities = 88/227 (38%), Positives = 126/227 (54%), Gaps = 15/227 (6%)
Query: 83 QLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIAND 142
+L + G PQ SM+ VL+PK +VI+DMAAAPG KTT +AQ +EN+G IIA D
Sbjct: 174 ELKAFEKGYFYPQGLPSMVTARVLEPKEDDVIIDMAAAPGGKTTHIAQLLENKGEIIAID 233
Query: 143 AKRDRANILIANLTRAGVLIAKVTVKDGAYFARYENTFDRVLLDAPCSSVGMIRKNFKFA 202
++R + N+ R GV K+ D D++LLDAPC+++G +R
Sbjct: 234 KSKNRLRKMEENIKRLGVKNVKLVQMDARKLPDLGIKADKILLDAPCTALG-VRPKLWEE 292
Query: 203 RTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENEEVVDFLLQKTDAKLE 262
RT + + +R Q+ I AA KSL+ GGVLVYSTCT+ ENE V F+++K KLE
Sbjct: 293 RT--LKHIEATARYQRAFIWAAIKSLRRGGVLVYSTCTLSYEENEGNVKFMIRK-GMKLE 349
Query: 263 KVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYIAKIRK 309
+ + + P I + K R +P + T+ F+IAK+RK
Sbjct: 350 EQSIFI--GSPGI---------GMNKVQRFYPHKHLTQGFFIAKLRK 385
>pir||T38272 probable NOL1-NOP2-sun family nucleolar protein - fission yeast
(Schizosaccharomyces pombe) >gi|2465159|emb|CAB16888.1|
(Z99753) putative NOL1-NOP2-sun family nucleolar protein
[Schizosaccharomyces pombe]
Length = 674
Score = 127 bits (315), Expect = 2e-28
Identities = 104/324 (32%), Positives = 145/324 (44%), Gaps = 67/324 (20%)
Query: 22 DDSEEFWAYLYKPLRPSIRINTLKGNLKEIKALLEEKF------------ELEP---IPW 66
D+ + F Y+ KPL + RI + + E+K E+ + + P +PW
Sbjct: 44 DEFDSFMEYMRKPLPTTFRICGYRHHAFELKNHFEKYYVPSLKNVVHEGQTIPPPTVLPW 103
Query: 67 TKGEGFYI---------KSYDVNYGQ---LIEYSLGLIIPQEASSMIPPVVLDPKPSEVI 114
YI KS + Q + E G I QEA SM+PP+ LD +P VI
Sbjct: 104 YPDGLAYIVDAQKDVIRKSPPLKRLQRFLVSENEAGNINRQEAVSMLPPLFLDVEPHHVI 163
Query: 115 LDMAAAPGSKTTQMAQYMEN-----------------EGCIIANDAKRDRA--------- 148
LDM AAPGSKT Q+ + + EG +IANDA RA
Sbjct: 164 LDMCAAPGSKTAQLIEAVYKKANIKDAAHDSKNLKSVEGLVIANDADPKRAQMLVHQINR 223
Query: 149 ----NILIAN---LTRAGVLIAKVTVKDGAYFARYENT--FDRVLLDAPCSSVGMIRKNF 199
NIL+ N T + + + DG + FDR+L D PCS G RKN
Sbjct: 224 LNSPNILVVNHDASTMPNIYVKGSSPSDGLNVIEEKKILKFDRILADVPCSGDGTFRKNL 283
Query: 200 KFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENEEVVDFLLQKTDA 259
R WS + LQ R+++ + LK GG LVYSTC+++P+ENE VV L+ T
Sbjct: 284 SLWREWSANSAFSLHPLQLRILIRGLQLLKVGGCLVYSTCSINPIENEAVVTAALKATGG 343
Query: 260 KLEKV----KLPLKTSEP-VIEWE 278
+ V KLPL +P ++ W+
Sbjct: 344 AVSLVDVSKKLPLLKRDPGLLSWK 367
>pir||T08926 hypothetical protein T15N24.50 - Arabidopsis thaliana
>gi|7228247|emb|CAB77061.1| (AL078465) putative protein
[Arabidopsis thaliana] >gi|7269512|emb|CAB79515.1|
(AL161565) putative protein [Arabidopsis thaliana]
Length = 626
Score = 126 bits (313), Expect = 4e-28
Identities = 100/302 (33%), Positives = 144/302 (47%), Gaps = 33/302 (10%)
Query: 14 LVERYSKLDDSEEFWAYLYKPLRP-SIRINTLKGNLKEIK-ALLEEKFELEPIPWTKGEG 71
L+E + ++ E A+ K RP SIR NTLK +++ LL L+P+ G
Sbjct: 246 LIEMFPVVELMELIEAFEKK--RPTSIRTNTLKTRRRDLADILLNRGVNLDPLSKWSKVG 303
Query: 72 FYIKSYDVNYGQLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQY 131
+ V G EY G + Q ASS +P + L P+ E ++DMAAAPG KTT +A
Sbjct: 304 LIVYDSQVPIGATPEYLAGFYMLQSASSFLPVMALAPREKERVVDMAAAPGGKTTYVAAL 363
Query: 132 MENEGCIIANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARYENTFDRVLLDAPCSS 191
M+N G I AN+ K R L ANL R GV V DG
Sbjct: 364 MKNTGIIYANEMKVPRLKSLSANLHRMGVTNTIVCNYDGR-------------------- 403
Query: 192 VGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAY----KSLKPGGVLVYSTCTVDPLENE 247
+I K+ + S + + LQK+LIL A + K GG +VYSTC+V ENE
Sbjct: 404 -EVISKDESVKTSKSADDIKKFAHLQKQLILGAIDLVDANSKTGGYIVYSTCSVMIPENE 462
Query: 248 EVVDFLLQKTDAKLEKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYIAKI 307
V+D+ L+ D KL V L P + ++ + KT R +P ++ + F++AK+
Sbjct: 463 AVIDYALKNRDVKL--VPCGLDFGRP--GFREHRFHPSLEKTRRFYPHVHNMDGFFVAKL 518
Query: 308 RK 309
+K
Sbjct: 519 KK 520
>emb|CAA21831.1| (AL033125) 1-evidence=predicted by
content~1-method=genefinder;084~1-evidence_end~2-
evidence=predicted by
match~2-match_accession=SWISS-PROT:P38205~2-
match_description=HYPOTHETICAL 77.9 KD PROTEIN IN
RRN10-MCM2 INTERGENIC REGION.~2-match_species=SACCHA>
Length = 751
Score = 125 bits (310), Expect = 8e-28
Identities = 71/199 (35%), Positives = 107/199 (53%), Gaps = 18/199 (9%)
Query: 84 LIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENE-------- 135
++E + G I QEA SMIPP+VLD +P++ +LDM AAPGSKT Q+ + +
Sbjct: 150 IVETTAGGISRQEAVSMIPPIVLDVRPTDKVLDMCAAPGSKTAQLIEALHAAPEEHKIPP 209
Query: 136 GCIIANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARYENT----------FDRVLL 185
G ++AND +R +L+ R VT D + F T FD++L
Sbjct: 210 GFVLANDVDNNRCYMLVHQAKRLNSPCLLVTNHDSSVFPNLVTTKPDGSKAILKFDKILC 269
Query: 186 DAPCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLE 245
D PCS G +RKN W++ + Y +Q R++ + L+ GG LVYSTC+++P+E
Sbjct: 270 DVPCSGDGTLRKNPDIWLKWNLAQAYNLHGIQYRIVRRGAEMLEVGGRLVYSTCSLNPIE 329
Query: 246 NEEVVDFLLQKTDAKLEKV 264
NE V+ +++ D LE V
Sbjct: 330 NEAVLQRIIKDADGALELV 348
>gb|AAF45921.1| (AE003430) EG:EG0007.9 gene product [Drosophila melanogaster]
Length = 746
Score = 125 bits (310), Expect = 8e-28
Identities = 71/199 (35%), Positives = 107/199 (53%), Gaps = 18/199 (9%)
Query: 84 LIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENE-------- 135
++E + G I QEA SMIPP+VLD +P++ +LDM AAPGSKT Q+ + +
Sbjct: 150 IVETTAGGISRQEAVSMIPPIVLDVRPTDKVLDMCAAPGSKTAQLIEALHAAPEEHKIPP 209
Query: 136 GCIIANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARYENT----------FDRVLL 185
G ++AND +R +L+ R VT D + F T FD++L
Sbjct: 210 GFVLANDVDNNRCYMLVHQAKRLNSPCLLVTNHDSSVFPNLVTTKPDGSKAILKFDKILC 269
Query: 186 DAPCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLE 245
D PCS G +RKN W++ + Y +Q R++ + L+ GG LVYSTC+++P+E
Sbjct: 270 DVPCSGDGTLRKNPDIWLKWNLAQAYNLHGIQYRIVRRGAEMLEVGGRLVYSTCSLNPIE 329
Query: 246 NEEVVDFLLQKTDAKLEKV 264
NE V+ +++ D LE V
Sbjct: 330 NEAVLQRIIKDADGALELV 348
>gi|11499905 fmu and fmv protein [Archaeoglobus fulgidus]
>gi|7445109|pir||D69540 fmu and fmv protein homolog -
Archaeoglobus fulgidus >gi|2648195|gb|AAB88932.1|
(AE000944) fmu and fmv protein [Archaeoglobus fulgidus]
Length = 437
Score = 123 bits (305), Expect = 3e-27
Identities = 87/271 (32%), Positives = 140/271 (51%), Gaps = 14/271 (5%)
Query: 39 IRINTLKGNLKEIKALLEEKFELEPIPWTKGEGFYIKSYDVNYGQLIEYSLGLIIPQEAS 98
+R+N LKG+++ ++ LE+ + + E F +K Y+ + L +S G + Q+ +
Sbjct: 179 VRVNELKGSVESVREYLEKNGVILEETFLD-EVFRVKGYEKHPASLDWHSEGKYVIQDLA 237
Query: 99 SMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRANILIANLTRA 158
S L+P P +V++D+AAAPG KT MA M+NEG I+A D R + + L +
Sbjct: 238 SCFVSHALNPSPGDVVIDLAAAPGMKTAHMAMLMQNEGRIVAVDNSPSRVRRMRSKLKQL 297
Query: 159 GVLIAKVTVKDGAYFARYENTFDRVLLDAPCSSVGMIRKNFKFARTWSIGKVYYHSRLQK 218
GV ++ + DG F E D+ L+DAPCSS G T+ K ++Q+
Sbjct: 298 GVKNVEIKLGDGCVF---ECEADKALVDAPCSSTGNYASQPNVKWTFDERKFRATMKVQR 354
Query: 219 RLILAAYKSLKPGGVLVYSTCTVDPLENEEVVDFLLQKTDAKLEKVKLPLKTSEPVIEWE 278
++I A L+ +VY+TC++ ENEE L KT AK+ + LP V E+
Sbjct: 355 KMIANA---LRNADEVVYATCSITFEENEE----NLLKTGAKI--LPLPSPFGRGVREFR 405
Query: 279 GRKYSDEVRKTIRIHPQDNDTEAFYIAKIRK 309
G + D K +R P +DT F+I+K+ +
Sbjct: 406 GVLFRD-WEKVVRSFPHLHDTAGFFISKLTR 435
>gi|6319447 Probable proliferating-cell nucleolar antigen (human p120); Ncl1p
[Saccharomyces cerevisiae]
>gi|586408|sp|P38205|NCL1_YEAST PUTATIVE
METHYLTRANSFERASE NCL1 >gi|626852|pir||S45758
proliferating-cell nucleolar antigen homolog YBL024w -
yeast (Saccharomyces cerevisiae)
>gi|536023|emb|CAA84843.1| (Z35785) ORF YBL024w
[Saccharomyces cerevisiae] >gi|602895|emb|CAA54502.1|
(X77291) homolog of human proliferating-cell nucleolar
protein p120 [Saccharomyces cerevisiae]
Length = 684
Score = 122 bits (304), Expect = 4e-27
Identities = 89/274 (32%), Positives = 132/274 (47%), Gaps = 50/274 (18%)
Query: 84 LIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYM-----ENEGCI 138
++E ++G I QEA SMIPP+VL+ KP +LDM AAPGSKT Q+ + + E G +
Sbjct: 139 VVENAVGNISRQEAVSMIPPIVLEVKPHHTVLDMCAAPGSKTAQLIEALHKDTDEPSGFV 198
Query: 139 IANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFAR---YENT--------FDRVLLDA 187
+ANDA R+++L+ L R V D +F R + N+ FDR+L D
Sbjct: 199 VANDADARRSHMLVHQLKRLNSANLMVVNHDAQFFPRIRLHGNSNNKNDVLKFDRILCDV 258
Query: 188 PCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENE 247
PCS G +RKN + W+ +Q ++ LK G LVYSTC+++P+ENE
Sbjct: 259 PCSGDGTMRKNVNVWKDWNTQAGLGLHAVQLNILNRGLHLLKNNGRLVYSTCSLNPIENE 318
Query: 248 EVVDFLLQKTDAKLEKV----KLP-LKTSEPVIEW------------------------- 277
VV L+K K+ V KLP L S+ V +W
Sbjct: 319 AVVAEALRKWGDKIRLVNCDDKLPGLIRSKGVSKWPVYDRNLTEKTKGDEGTLDSFFSPS 378
Query: 278 --EGRKYSDEVRKTIRIHPQDNDTEAFYIAKIRK 309
E K++ ++ +R++P +T F+I K
Sbjct: 379 EEEASKFN--LQNCMRVYPHQQNTGGFFITVFEK 410
>pir||A72245 sun protein - Thermotoga maritima (strain MSB8)
>gi|4982078|gb|AAD36579.1|AE001799_11 (AE001799) sun
protein [Thermotoga maritima]
Length = 431
Score = 121 bits (300), Expect = 1e-26
Identities = 86/283 (30%), Positives = 144/283 (50%), Gaps = 19/283 (6%)
Query: 33 KPLRPSIRINTLKGNLKE-IKALLEEKFELEP---IPWTKGEGFYIKSYDVNYGQLIEYS 88
+PL +R+N+L +E IK L EE E P P++ ++ V +
Sbjct: 160 EPLPVMLRVNSLAATKEEVIKILAEEGTEAVPGKHAPFS----LIVRKLGVPMNDSRVIN 215
Query: 89 LGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRA 148
GL Q SS + P ++ +P +LD AAPG KTT +A+ M+++G I+A D R++
Sbjct: 216 DGLASVQGESSQLVPFFMELRPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKI 275
Query: 149 NILIANLTRAGVLIAKVTVKDGAYFARY-ENTFDRVLLDAPCSSVGMIRKNFKFARTWSI 207
++ + R + + + D Y ++TFDRVL+DAPC+S+G R + + R +
Sbjct: 276 QLVEKHAKRLKLSSIETKIADAERLTEYVQDTFDRVLVDAPCTSLGTARNHPEVLRRVNK 335
Query: 208 GKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENEEVVD-FLLQKTDAKLEKVKL 266
S +Q R++ A++ L+ GG+L+YSTCTV EN EVV F+ ++ D ++ ++
Sbjct: 336 EDFEKFSEIQLRMVQQAWQLLEKGGILLYSTCTVTKEENTEVVKRFVYEQKDVEVIDIRD 395
Query: 267 PLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYIAKIRK 309
+K E W+G + + D FYI+ +RK
Sbjct: 396 KMKEFEVEGIWDGYGF---------LMLPDETITPFYISVLRK 429
>pir||C81412 NOL1/NOP2/sun family protein Cj0636 [imported] - Campylobacter
jejuni (strain NCTC 11168) >gi|6968103|emb|CAB75272.1|
(AL139075) NOL1\NOP2\sun family protein [Campylobacter
jejuni]
Length = 279
Score = 121 bits (300), Expect = 1e-26
Identities = 94/274 (34%), Positives = 148/274 (53%), Gaps = 21/274 (7%)
Query: 42 NTLKGNLKEI-KALLEEKFELEPIPWTKGEGFYIKSYDVNYGQLIE----YSLGLIIPQE 96
NTLK +++E+ K L++ + + I Y +D ++ ++ Q
Sbjct: 19 NTLKTSIEELEKEFLKQNLKFKKI------NVYCYLFDAKDKAILSSMKAFNEAHFYIQN 72
Query: 97 ASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRANILIANLT 156
SS + + L+ K + +LDM AAPG K+ +A +M+N G + N+ RDR IL NL
Sbjct: 73 YSSYLCALNLEVKAGQSVLDMCAAPGGKSINLANFMQNTGYLACNEMSRDRFFILQKNLK 132
Query: 157 RAGVLIAKVTVKDGAYFARY-ENTFDRVLLDAPCSSVGMIRKNFKFARTWSIGKVYYHSR 215
GV AKV +KDG FD++LLDAPCS+ I F +++ ++ ++
Sbjct: 133 NYGV-NAKVFMKDGKNIGNLCPLKFDKILLDAPCSTFAKI--GFDLEKSYK--EIKNIAK 187
Query: 216 LQKRLILAAYKSLKPGGVLVYSTCTVDPLENEEVVDFLLQKTDAKLEKVKLPLKTSEPVI 275
QK+L+ +A K+LK GG LVYSTCT ENEEV++ L K++ KLE + + L+ E
Sbjct: 188 TQKKLLHSALKALKIGGELVYSTCTFTKEENEEVIENAL-KSEFKLELLDIDLENVE-AK 245
Query: 276 EWEGRKYSDEVRKTIRIHPQDNDTEAFYIAKIRK 309
+ +++ E+ K RI P D + F+IAK+RK
Sbjct: 246 AGQSEEFA-EISKCRRILP-SLDYDGFFIAKLRK 277
>pir||A72478 probable fmu protein APE2465 - Aeropyrum pernix (strain K1)
>gi|5106170|dbj|BAA81481.1| (AP000064) 420aa long
hypothetical fmu protein [Aeropyrum pernix]
Length = 420
Score = 115 bits (285), Expect = 7e-25
Identities = 87/293 (29%), Positives = 141/293 (47%), Gaps = 19/293 (6%)
Query: 22 DDSEEFWAYLYKPLRPSIRINTLKGNLKEI-KALLEEKFELEPIPWTKGEGFYIKSYDVN 80
D+ E+ + +P S+R+NTLK + E+ KA+ P +G Y ++
Sbjct: 140 DELEKLLDAINRPPVNSVRVNTLKASFDEVYKAIRSSGLYAWPSDRVEGVIRYRGPFNDT 199
Query: 81 YGQLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIA 140
+L+ + G I+PQ+ SS +L P+P E++LDM AAPG KTT +A+ + I+
Sbjct: 200 LARLL--AEGKIVPQDESSAAAAPLLQPRPGEIVLDMCAAPGGKTTHLAELSRLQARILG 257
Query: 141 NDAKRDRAN----ILIANLTRAGVLIAKVTVKDGAYFARYENTFDRVLLDAPCSSVGMIR 196
D DR ++ A + A V + K + + D++LLD PCS+ G +
Sbjct: 258 FDIYWDRLRRMKTLVEATASEAAVAVVKADAANAPKILG-RGSVDKILLDPPCSTTGGLH 316
Query: 197 KNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENEEVVDFLLQK 256
KN + K+ LQK L+ AA +++KPGG+++Y+ C++ E E+VV L+K
Sbjct: 317 KNVDARWRLTRRKIMELQELQKTLLDAAVETVKPGGLILYTVCSILAEEGEDVVLHALEK 376
Query: 257 TDAKLEKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYIAKIRK 309
LE V L E I + T+R P + F+ A +RK
Sbjct: 377 W-GNLEIVPLNGPYDESPI----------LPGTMRAWPHRHGVTGFFYALLRK 418
>gb|AAD22359.1|AC006592_16 (AC006592) unknown protein [Arabidopsis thaliana]
Length = 837
Score = 114 bits (282), Expect = 2e-24
Identities = 98/327 (29%), Positives = 142/327 (42%), Gaps = 59/327 (18%)
Query: 5 EEFKKINKKLVERYSK-----LDDSEEFWAYLYKPLRPSIRINTLKGNLKEIKALLEEKF 59
E +N E Y K ++ + F L KPL + R+N+ EI ++LE F
Sbjct: 48 EPIVTVNPNFEEYYKKQGIVKAEEWDLFMEILRKPLPAAFRVNSNGQFCDEIISILENDF 107
Query: 60 ------------ELE---PIPWTKGEGFYIKSY---DVNYGQLIEY---------SLGLI 92
ELE P+PW + ++ ++ Q +E +G I
Sbjct: 108 MKSLQAEAIEGGELEAIKPLPWYPKNLAWHSNFSRKEIRKNQTLERFHEFLKLENEVGNI 167
Query: 93 IPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMEN--------EGCIIANDAK 144
QEA SM+PP+ LD P +LDM AAPGSKT Q+ + + G ++AND
Sbjct: 168 TRQEAVSMVPPLFLDVHPDHFVLDMCAAPGSKTFQLLEIIHEASEPGSLPNGLVVANDVD 227
Query: 145 RDRANILIANLTRAGVLIAKVTVKDGAYFARY-------------EN------TFDRVLL 185
R+N+LI R VT +G F EN FDRVL
Sbjct: 228 FKRSNLLIHQTKRMCTSNLIVTNHEGQQFPGCRLNKSRASEKGISENMPINQLAFDRVLC 287
Query: 186 DAPCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLE 245
D PCS G +RK R W+ G LQ L + LK GG ++YSTC+++P+E
Sbjct: 288 DVPCSGDGTLRKAPDIWRKWNSGMGNGLHSLQIILAMRGLSLLKVGGKMIYSTCSMNPVE 347
Query: 246 NEEVVDFLLQKTDAKLEKVKLPLKTSE 272
+E VV +L++ +E + + K E
Sbjct: 348 DEAVVAEILRRCGDSVELLDVSDKLPE 374
>dbj|BAB06226.1| (AP001515) unknown conserved protein [Bacillus halodurans]
Length = 450
Score = 113 bits (280), Expect = 3e-24
Identities = 78/247 (31%), Positives = 128/247 (51%), Gaps = 17/247 (6%)
Query: 12 KKLVERYSKLDDSEEFWAYLYKPLRPSIRINTLKGNLKEIKALLEEKFELEPIPWTKGEG 71
K+ +++Y + +++ + P + + R+N K ++E E+ E E + T G
Sbjct: 157 KRWIDQYGE-EETVSICEEMLLPPKVTARVNVRKRTVEEAL----ERLEHEGVQATNG-- 209
Query: 72 FYIKSYD---VNYGQLIEYSL---GLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKT 125
+ S D V+ G + L G + Q+ SSM+ + P+P E ILD AAPG K+
Sbjct: 210 --VLSDDAIVVDKGTITSTRLFQDGELTIQDESSMLVARAVAPRPGERILDACAAPGGKS 267
Query: 126 TQMAQYMENEGCIIANDAKRDRANILIANLTRAGVLIAKVTVKDG--AYFARYENTFDRV 183
T MA+ M+ EG I++ D R + ++ R G+ K D A + FDR+
Sbjct: 268 THMAERMDGEGTIVSLDMHRHKVKLIEEQAKRLGLDNIKAQTLDARKAREVFADEPFDRI 327
Query: 184 LLDAPCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDP 243
L+DAPCS +G+IR+ T + +Q ++ + K +KPGG+L+YSTCT+D
Sbjct: 328 LVDAPCSGLGVIRRKPDIKWTKREADMKAIRNVQLDILSSVAKLVKPGGLLIYSTCTIDQ 387
Query: 244 LENEEVV 250
LENE+V+
Sbjct: 388 LENEQVI 394
>emb|CAC05734.1| (AL391744) putative methyltransferase possibily cytidine and tRNAs;
similar to yeast ncl1 [Schizosaccharomyces pombe]
Length = 396
Score = 113 bits (279), Expect = 4e-24
Identities = 71/220 (32%), Positives = 110/220 (49%), Gaps = 26/220 (11%)
Query: 84 LIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMEN--------- 134
++E G I QE+ SM+PP++L+ + +LDM AAPGSKT Q+ + +
Sbjct: 117 VLETEAGDINRQESVSMVPPLLLNVESHHKVLDMCAAPGSKTAQLLEALHKPTKKEDITT 176
Query: 135 ---EGCIIANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARYENT---------FDR 182
G +IAND+ RA++L+ + R + D ++ + + FDR
Sbjct: 177 LLPSGIVIANDSDNKRAHMLVHQIKRLNSPNVLIVNHDASFLPNFHLSSPDGKKFLKFDR 236
Query: 183 VLLDAPCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVD 242
+L D PCS G RKN WS+ Q ++++ + L+ GG LVYSTC+++
Sbjct: 237 ILADVPCSGDGTFRKNIALWNEWSLKTALGLHATQIKILMRGLQLLEKGGRLVYSTCSLN 296
Query: 243 PLENEEVVDFLLQKTDAKLEKV----KLP-LKTSEPVIEW 277
P+ENE VV +L T + V +LP LK S+ V W
Sbjct: 297 PIENEAVVSAVLNATRGSVRLVDVSSELPQLKRSQGVDNW 336
>sp|P94464|SUN_BACSU SUN PROTEIN >gi|7429452|pir||E69878 RNA-binding Sun protein homolog
yloM - Bacillus subtilis >gi|2337803|emb|CAA74264.1|
(Y13937) putative Fmu protein [Bacillus subtilis]
>gi|2633946|emb|CAB13447.1| (Z99112) alternate gene
name: sun~similar to RNA-binding Sun protein [Bacillus
subtilis]
Length = 447
Score = 110 bits (272), Expect = 2e-23
Identities = 86/285 (30%), Positives = 137/285 (47%), Gaps = 25/285 (8%)
Query: 34 PLRPSIRINTLKGNLKEIKALLEEKFELEPIPWTKGE--GFYIKSYDVNYGQLIEYSLGL 91
P + ++R+N +K + +A L ++ E I KG+ +K + G
Sbjct: 177 PPKQTLRVNQMKAD----RAELLDQMAAEGIEVEKGDLAEDAVKLLKGTIAGTHFFQNGE 232
Query: 92 IIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRANIL 151
+ Q+ SSM+ LDPK E +LD AAPG K+ +A+ M+N+G + + D + + ++
Sbjct: 233 VSIQDESSMLVARALDPKSDETVLDACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVKLI 292
Query: 152 IANLTRAGVLIAKVTVKDGAYFAR-YEN-TFDRVLLDAPCSSVGMIRKNFKFARTWSIGK 209
R G+ I D +EN FDR+L+DAPCS G+IR+ T
Sbjct: 293 KEAADRLGLTIIHAETMDARKAGETFENEQFDRILVDAPCSGFGVIRRKPDMKYTKKPDD 352
Query: 210 VYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENEEVVDFLLQ-----KTDAKLEKV 264
+ +Q ++ +K GG LVYSTCT+D EN+EV+ +Q + D LEK
Sbjct: 353 SARLAEIQLSILREIAPLVKKGGTLVYSTCTMDRTENDEVIHAFIQEHPDFEPDLSLEK- 411
Query: 265 KLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYIAKIRK 309
+LP K P + +GR ++I P T+ F+I +RK
Sbjct: 412 RLPEKV-RPFVR-DGR---------LQILPHYFGTDGFFICSMRK 445
>sp|P44788|SUN_HAEIN SUN PROTEIN (FMU PROTEIN) >gi|1074459|pir||F64155 hypothetical
protein HI0624 - Haemophilus influenzae (strain Rd KW20)
>gi|1573620|gb|AAC22284.1| (U32745) sun protein (sun)
[Haemophilus influenzae Rd]
Length = 451
Score = 104 bits (257), Expect = 1e-21
Identities = 81/278 (29%), Positives = 132/278 (47%), Gaps = 25/278 (8%)
Query: 39 IRINTLKGNLKEIKALLEEKFELEPIPWTKGEGFYIKSYDVNYGQLIEYSLGLIIPQEAS 98
+R+N+ K L+ + LLEE+ + + +L + G + Q+ S
Sbjct: 189 LRVNSQKNALETYRTLLEEQGVSSKT--SHHPNALCLDIPIAVQKLPHFEEGAVTVQDLS 246
Query: 99 SMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRANILIANLTRA 158
+ +L+PK E ILD AAPG KTT + + + + +IA D + R + NL R
Sbjct: 247 AQWAATLLEPKNEEWILDACAAPGGKTTHILE-LAPQANVIALDVESHRLKRVEENLERL 305
Query: 159 G---VLIAKVTVKDGAYFARYENT---FDRVLLDAPCSSVGMIRKNFKFARTWSIGKVYY 212
+++ K + A + FDR+LLDAPCS+ G+IR++ +
Sbjct: 306 NQQAIVVCGDASKPDEWLAEIGKSAAKFDRILLDAPCSATGVIRRHPDIKWLRKETDIAQ 365
Query: 213 HSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLEN-EEVVDFLLQKTDAKLEKVKLPLKTS 271
LQK+++ A ++ LKP GVL+Y+TC+V P EN E++ FL DA+L + LP
Sbjct: 366 LVELQKKILSALWEKLKPNGVLLYATCSVLPEENCEQIQAFLNAHADAEL--LSLPFSDD 423
Query: 272 EPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYIAKIRK 309
+ + ++ PQ N + FY AK+ K
Sbjct: 424 KSAVGFQ-------------FIPQPNSGDGFYYAKLLK 448
>pir||B81093 fmu and fmv protein, probable NMB1351 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7226595|gb|AAF41725.1| (AE002483) fmu and fmv
protein, putative [Neisseria meningitidis MC58]
Length = 418
Score = 104 bits (256), Expect = 2e-21
Identities = 91/305 (29%), Positives = 150/305 (48%), Gaps = 21/305 (6%)
Query: 14 LVERYSKLDDSEEFWAY---LYKPLRPSIRINTLKGNLKEIKALLE-EKFELEPIPWTKG 69
LVE+ + EE A+ + +P IR+NTLKG ++ LL+ E + E P++
Sbjct: 125 LVEQLKQHWREEEILAFGRSINQPAPLDIRVNTLKGKRDKVLPLLQAESADAEATPYSPW 184
Query: 70 EGFYIKS-YDVNYGQLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQM 128
G +K+ +N +L + G + Q+ S + +++ K E+I+D A G KT +
Sbjct: 185 -GIRLKNKIALNKHEL--FLDGTLEVQDEGSQLLALLVGAKRGEIIVDFCAGAGGKTLAV 241
Query: 129 AQYMENEGCIIANDAKRDRANILIANLTRAG---VLIAKVTVKDGAYFARYENTFDRVLL 185
M N+G I A D R L +TRAG + ++ + A AR DRVL+
Sbjct: 242 GAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNIHPERIGSEHDARIARLAGKADRVLV 301
Query: 186 DAPCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLE 245
DAPCS +G +R+N S V Q ++ AA K +KP G LVY+TC++ P E
Sbjct: 302 DAPCSGLGTLRRNPDLKYRQSAETVANLLEQQHSILDAASKLVKPQGRLVYATCSILPEE 361
Query: 246 NE-EVVDFLLQKTDAKLEKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYI 304
NE +V FL + + + P+ +E + G K + K +R++ + T+ F+
Sbjct: 362 NELQVERFLSEHPEFE------PVNCAELL---AGLKIDLDTGKYLRLNSARHQTDGFFA 412
Query: 305 AKIRK 309
A +++
Sbjct: 413 AVLQR 417
>emb|CAA10711.1| (AJ132604) sunL protein [Lactococcus lactis]
Length = 424
Score = 102 bits (252), Expect = 5e-21
Identities = 75/234 (32%), Positives = 117/234 (49%), Gaps = 18/234 (7%)
Query: 80 NYGQLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCII 139
N+ E+ G I Q+ +S + L+ + +E +LD AAPG K+T MAQY+ G I
Sbjct: 202 NFSITEEFQTGRITIQDETSQLVAPQLELEGTEEVLDACAAPGGKSTHMAQYL-TTGHIT 260
Query: 140 ANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARYEN----TFDRVLLDAPCSSVGMI 195
A D + +++ N R V K+T + YEN FDR+L+DAPCS +G+I
Sbjct: 261 ALDLYEHKLDLINQNAQRQHV-ADKITTQKADATMIYENFGPEKFDRILVDAPCSGIGLI 319
Query: 196 RKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENEEVVDFLLQ 255
R+ ++Q ++ +A KSLK G++VYSTCT+ EN +VV L+
Sbjct: 320 RRKPDIRYRKESSDFIDLQKIQLEILNSASKSLKKSGIMVYSTCTIFDEENFDVVHEFLE 379
Query: 256 KTDAKLEKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYIAKIRK 309
E+V+ + +P + EG + I P+ T+ F+IAK +K
Sbjct: 380 -NHPNFEQVE--ISNEKPEVIKEG---------CLFITPEMYHTDGFFIAKFKK 421
>pir||F81848 SUN-family protein NMA1563 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7380204|emb|CAB84790.1|
(AL162756) SUN-family protein [Neisseria meningitidis
Z2491]
Length = 418
Score = 101 bits (250), Expect = 9e-21
Identities = 89/305 (29%), Positives = 151/305 (49%), Gaps = 21/305 (6%)
Query: 14 LVERYSKLDDSEEFWAY---LYKPLRPSIRINTLKGNLKEIKALLE-EKFELEPIPWTKG 69
LVE+ + + EE A+ + + IR+NTLKG ++ LL+ E + E P++
Sbjct: 125 LVEQLQQHWNEEEILAFGRSINQAAPLDIRVNTLKGKRDKVLPLLQAESADAEATPYSPW 184
Query: 70 EGFYIKS-YDVNYGQLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQM 128
G +K+ +N +L + G + Q+ S + +++ K E+I+D A G KT +
Sbjct: 185 -GIRLKNKIALNKHEL--FLDGTLEVQDEGSQLLALLVGAKRGEIIVDFCAGAGGKTLAI 241
Query: 129 AQYMENEGCIIANDAKRDRANILIANLTRAG---VLIAKVTVKDGAYFARYENTFDRVLL 185
M N+G I A D R L +TRAG V +++ + + AR DRVL+
Sbjct: 242 GAQMANKGRIYAFDIAEKRLANLKPRMTRAGLTNVHPERISSEHDSRIARLAGKADRVLV 301
Query: 186 DAPCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLE 245
DAPCS +G +R+N S V Q ++ AA K +KP G LVY+TC++ P E
Sbjct: 302 DAPCSGLGTLRRNPDLKYRQSAETVAKLLEQQHSILDAASKLVKPQGRLVYATCSILPEE 361
Query: 246 NE-EVVDFLLQKTDAKLEKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYI 304
NE +V FL + + + P+ +E + + K K +R++ ++ T+ F+
Sbjct: 362 NELQVERFLSEHPEFE------PVNCAELL---QSLKVDLHTGKYLRLNSGEHQTDGFFA 412
Query: 305 AKIRK 309
A +++
Sbjct: 413 AVLQR 417
>pir||G82372 sun protein VC0044 [imported] - Vibrio cholerae (group O1 strain
N16961) >gi|9654437|gb|AAF93222.1| (AE004095) sun
protein [Vibrio cholerae]
Length = 434
Score = 101 bits (249), Expect = 1e-20
Identities = 73/226 (32%), Positives = 115/226 (50%), Gaps = 6/226 (2%)
Query: 39 IRINTLKGNLKEIKALLEEKFELEPIPWTKGEGFYIKSYDVNYGQLIEYSLGLIIPQEAS 98
+R+N E +ALLE+ + P + E + QL ++ G + Q+A+
Sbjct: 181 LRVNHQHHTRAEYQALLEQA-GIVTTPHAQAEDALCLETPCDVHQLPGFAEGWVSVQDAA 239
Query: 99 SMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRANILIANLTRA 158
+ + L P+ E+ILD AAPG KT + + E ++A D R + NL R
Sbjct: 240 AQLALTYLAPQAGELILDCCAAPGGKTAHILERTP-ESQVVAIDCDETRLKRVRENLQRL 298
Query: 159 GVLIAKVTVKDGAYFARY--ENTFDRVLLDAPCSSVGMIRKNFKFARTWSIGKVYYHSRL 216
L A+V D Y ++ FDR+LLDAPCS+ G+IR++ + + L
Sbjct: 299 E-LTAQVICGDARYPQQWWQGEQFDRILLDAPCSATGVIRRHPDIKWLRRADDIAALAEL 357
Query: 217 QKRLILAAYKSLKPGGVLVYSTCTVDPLENEEVVDFLLQKT-DAKL 261
Q+ ++ A ++ LKPGG LVY+TC++ P EN V L++T DA+L
Sbjct: 358 QREILDAMWQQLKPGGSLVYATCSITPQENRLQVKAFLERTPDARL 403
>sp|P72943|SUN_SYNY3 SUN PROTEIN (FMU PROTEIN) >gi|7429453|pir||S74920 fmu protein -
Synechocystis sp. (strain PCC 6803)
>gi|1652035|dbj|BAA16960.1| (D90902) fmu and fmv protein
[Synechocystis sp.]
Length = 446
Score = 100 bits (247), Expect = 2e-20
Identities = 85/290 (29%), Positives = 130/290 (44%), Gaps = 12/290 (4%)
Query: 23 DSEEFWAYLYKPLRPSIRINTLKGNLKEIKALLEEKFELEPIPWTKGEGFYIKSYDVNYG 82
++E AY + +RIN LK + E+ L E +G +
Sbjct: 165 ETESLCAYFNQNPSLDLRINPLKTSRVEVAQSLAELNLTTTAMAGLPQGLRLGGKTGAIT 224
Query: 83 QLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIAND 142
QL ++ G Q+AS+ +L+P+P E I D+ AAPG KTT +A+ M ++G I A D
Sbjct: 225 QLPGFAEGWWTVQDASAQWVAQILNPQPEETIFDVCAAPGGKTTHIAELMGDQGQIYAGD 284
Query: 143 AKRDRANILIANLTRAGVLIAKVTVKDGAY--FARYENTFDRVLLDAPCSSVGMIRKNFK 200
R L R G+ K+ D DR LLD PCS +G + +N
Sbjct: 285 RHGWRLQKLAVTQQRLGLTSIKIWEGDLTQPGVKPPVELVDRALLDVPCSGLGTLHRNPD 344
Query: 201 FARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENEEVVD-FLLQKTDA 259
+ + LQ+ L+ A +K GG LVYSTCT++P ENE ++ FL D
Sbjct: 345 LRWRQTPATIATLLPLQQALLKAIAPLVKSGGTLVYSTCTLNPAENEAQIERFLQDHEDW 404
Query: 260 KLEKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYIAKIRK 309
+ E P + + P +G+ S + I P + + F+IA ++K
Sbjct: 405 RSE----PFEWTSP----QGQTNS-VTSGMLTILPHHHHQDGFFIANLKK 445
>dbj|BAB01410.1| (AP000375) contains similarity to SUN and FMU
proteins~gene_id:MJG19.14 [Arabidopsis thaliana]
Length = 531
Score = 99.8 bits (245), Expect = 3e-20
Identities = 64/178 (35%), Positives = 96/178 (52%), Gaps = 3/178 (1%)
Query: 90 GLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRAN 149
G+ Q+ S+ + V+ P+P E I+D AAPG KT MA ++ +G I A D R
Sbjct: 318 GICSVQDESAGLIVSVVKPQPGERIMDACAAPGGKTLFMASCLKGQGMIYAMDVNEGRLR 377
Query: 150 IL--IANLTRAGVLIAKVTVKDGAYFARYENTFDRVLLDAPCSSVGMIRKNFKFARTWSI 207
IL A + LI + + E +D+VLLDAPCS +G++ K +
Sbjct: 378 ILGETAKSHQVDGLITTIHSDLRVFAETNEVQYDKVLLDAPCSGLGVLSKRADLRWNRKL 437
Query: 208 GKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENEEVVD-FLLQKTDAKLEKV 264
+ ++LQ L+ +A K +K GGVLVYSTC++DP ENE V+ FLL+ + ++ V
Sbjct: 438 EDMLELTKLQDELLDSASKLVKHGGVLVYSTCSIDPEENEGRVEAFLLRHPEFTIDPV 495
>sp|P36929|SUN_ECOLI SUN PROTEIN (FMU PROTEIN) >gi|7445095|pir||D65121 fmu protein -
Escherichia coli >gi|1772512|emb|CAA71359.1| (Y10307)
sun [Escherichia coli] >gi|2367212|gb|AAC76314.1|
(AE000407) orf, hypothetical protein [Escherichia coli
K12]
Length = 429
Score = 97.9 bits (240), Expect = 1e-19
Identities = 69/183 (37%), Positives = 102/183 (55%), Gaps = 9/183 (4%)
Query: 90 GLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRAN 149
G + Q+AS+ L P+ E ILD+ AAPG KTT + + + E ++A D R +
Sbjct: 226 GWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILE-VAPEAQVVAVDIDEQRLS 284
Query: 150 ILIANLTRAGVLIAKVTVK--DGAYFARY--ENTFDRVLLDAPCSSVGMIRKNFKFARTW 205
+ NL R G+ K TVK DG Y +++ E FDR+LLDAPCS+ G+IR++
Sbjct: 285 RVYDNLKRLGM---KATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLR 341
Query: 206 SIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENEEVVDFLLQKT-DAKLEKV 264
+ ++LQ ++ A + LK GG LVY+TC+V P EN + LQ+T DA+L +
Sbjct: 342 RDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAELCET 401
Query: 265 KLP 267
P
Sbjct: 402 GTP 404
>emb|CAA54370.1| (X77091) fmv [Escherichia coli]
Length = 191
Score = 94.8 bits (232), Expect = 1e-18
Identities = 65/167 (38%), Positives = 95/167 (55%), Gaps = 9/167 (5%)
Query: 106 LDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRANILIANLTRAGVLIAKV 165
L P+ E ILD+ AAPG KTT + + + E ++A D R + + NL R G+ K
Sbjct: 4 LAPQNGEHILDLCAAPGGKTTHILE-VAPEAQVVAVDIDEQRLSRVYDNLKRLGM---KA 59
Query: 166 TVK--DGAYFARY--ENTFDRVLLDAPCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLI 221
TVK DG Y +++ E FDR+LLDAPCS+ G+IR++ + ++LQ ++
Sbjct: 60 TVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEIL 119
Query: 222 LAAYKSLKPGGVLVYSTCTVDPLENEEVVDFLLQKT-DAKLEKVKLP 267
A + LK GG LVY+TC+V P EN + LQ+T DA+L + P
Sbjct: 120 DAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETGTP 166
>gb|AAF51875.1| (AE003599) CG11109 gene product [Drosophila melanogaster]
Length = 358
Score = 94.4 bits (231), Expect = 2e-18
Identities = 78/237 (32%), Positives = 114/237 (47%), Gaps = 32/237 (13%)
Query: 95 QEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRANILIAN 154
Q S++ VLDP+P E ILDM AAPG+KT+ +A+ M + G ++A D R ++
Sbjct: 131 QNLPSIVCVRVLDPQPGERILDMCAAPGNKTSHIAELMGDRGSVVALDNSASRVRSMLPK 190
Query: 155 LTRAGVLIAKVTVKDGAYFARYEN--------------TFDRVLLDAPCSSVGMIRKNFK 200
L + A V A A + +FDR+LLDAPCS +G +
Sbjct: 191 LGHYKSITAHVFNSTEAVAADAPSAPVGEFTGPPFPCESFDRILLDAPCSGLGNRPQLSC 250
Query: 201 FARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENEEVVDFLLQKTDAK 260
+ + Y H +Q+RL A + ++PGG+LVYSTCTV E E +V + L+K
Sbjct: 251 SIKQVKVLSSYPH--IQRRLFEQAVQLVRPGGILVYSTCTVTEDECECLVAWALRKF--- 305
Query: 261 LEKVKLPLKTSEPVIEWEGRKY------SDEVRKTIRIHPQ--DNDTEAFYIAKIRK 309
V+L L + P W G + + R R P + DT F+IAK +K
Sbjct: 306 ---VELRLTDATP--RWGGPGLPLPGFEACKSRLLQRFGPSGANADTVGFFIAKFQK 357
>dbj|BAA31227.1| (D86411) Fmv [Vibrio alginolyticus]
Length = 225
Score = 94.0 bits (230), Expect = 2e-18
Identities = 73/228 (32%), Positives = 109/228 (47%), Gaps = 24/228 (10%)
Query: 87 YSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRD 146
+ G + Q+A++ + L P+ E+ILD AAPG KT + + ++A D
Sbjct: 18 FDKGWVSVQDAAAQLSINYLKPQDGELILDCCAAPGGKTAHILERTSGSE-VVAIDCDDT 76
Query: 147 RANILIANLTRAGVLIAKVTVKDGAYFARY--ENTFDRVLLDAPCSSVGMIRKNFKFART 204
R + NL R L AKV D + FDR+LLDAPCS+ G+IR++
Sbjct: 77 RLKRVHENLKRLN-LQAKVVCGDARNPQEWWQGEQFDRILLDAPCSATGVIRRHPDIKWL 135
Query: 205 WSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLEN-EEVVDFLLQKTDAKLEK 263
+ + LQ + A + LKPGG +VY+TC++ P EN E+V FL + DA+
Sbjct: 136 RRADDIAALAELQSEIFDAMWTQLKPGGTMVYATCSITPQENVEQVKAFLARTADAQ--- 192
Query: 264 VKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYIAKIRKPR 311
L S+P + GR +I P + D + FY A + K R
Sbjct: 193 ----LLDSDP--DQPGR----------QILPGEEDMDGFYYAVLTKTR 224
>pir||I40649 hypothetical protein 265 - Coxiella burnetii
>gi|511454|gb|AAA56914.1| (U10529) unknown [Coxiella
burnetii]
Length = 265
Score = 93.6 bits (229), Expect = 3e-18
Identities = 68/229 (29%), Positives = 118/229 (50%), Gaps = 13/229 (5%)
Query: 38 SIRINTLKGNLKEIKALLEEK-FELEPIPWTKGEGFYIKSYDVNYGQLIEYSLGLIIPQE 96
++R+N K + + +L++K +P+ + K V+ QL ++ G Q+
Sbjct: 2 TLRVNLTKISREIYLEMLDQKNISAKPLDFLPAAIQLEKPCSVH--QLPGFNEGYCYIQD 59
Query: 97 ASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRANILIANLT 156
A+ +L + ++ +LD AAPGSKT+ + + + ++A D + R N + N+T
Sbjct: 60 AAGQFAAYLLKLENNQTVLDACAAPGSKTSHILEVNPHLKTLVAIDNNKQRLNRIKENIT 119
Query: 157 RAGV-------LIAKVTVKDGAYFARYENTFDRVLLDAPCSSVGMIRKNFKFARTWSIGK 209
R G+ L+A V+ D FDR+LLDAPCS+ G+IR++ G
Sbjct: 120 RLGLRQEHLQCLLADVSQIDQWSSGEL---FDRILLDAPCSATGVIRRHPDIKLLRQPGD 176
Query: 210 VYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENEEVVDFLLQKTD 258
+ + + + +L+ A + LK GG L+YSTC+V P ENE+V++ L D
Sbjct: 177 ISQYHQKKLQLLNALWTVLKAGGFLLYSTCSVLPDENEKVIEEFLSTHD 225
>sp|P45679|SUN_COXBU SUN PROTEIN (FMU PROTEIN)
Length = 430
Score = 93.6 bits (229), Expect = 3e-18
Identities = 68/229 (29%), Positives = 118/229 (50%), Gaps = 13/229 (5%)
Query: 38 SIRINTLKGNLKEIKALLEEK-FELEPIPWTKGEGFYIKSYDVNYGQLIEYSLGLIIPQE 96
++R+N K + + +L++K +P+ + K V+ QL ++ G Q+
Sbjct: 167 TLRVNLTKISREIYLEMLDQKNISAKPLDFLPAAIQLEKPCSVH--QLPGFNEGYCYIQD 224
Query: 97 ASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRANILIANLT 156
A+ +L + ++ +LD AAPGSKT+ + + + ++A D + R N + N+T
Sbjct: 225 AAGQFAAYLLKLENNQTVLDACAAPGSKTSHILEVNPHLKTLVAIDNNKQRLNRIKENIT 284
Query: 157 RAGV-------LIAKVTVKDGAYFARYENTFDRVLLDAPCSSVGMIRKNFKFARTWSIGK 209
R G+ L+A V+ D FDR+LLDAPCS+ G+IR++ G
Sbjct: 285 RLGLRQEHLQCLLADVSQIDQWSSGEL---FDRILLDAPCSATGVIRRHPDIKLLRQPGD 341
Query: 210 VYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENEEVVDFLLQKTD 258
+ + + + +L+ A + LK GG L+YSTC+V P ENE+V++ L D
Sbjct: 342 ISQYHQKKLQLLNALWTVLKAGGFLLYSTCSVLPDENEKVIEEFLSTHD 390
>gb|AAA58086.1| (U18997) we have one ORF, ECFMT has fmu and fmv [Escherichia coli]
Length = 386
Score = 92.1 bits (225), Expect = 8e-18
Identities = 62/161 (38%), Positives = 91/161 (56%), Gaps = 8/161 (4%)
Query: 90 GLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRAN 149
G + Q+AS+ L P+ E ILD+ AAPG KTT + + + E ++A D R +
Sbjct: 226 GWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILE-VAPEAQVVAVDIDEQRLS 284
Query: 150 ILIANLTRAGVLIAKVTVK--DGAYFARY--ENTFDRVLLDAPCSSVGMIRKNFKFARTW 205
+ NL R G+ K TVK DG Y +++ E FDR+LLDAPCS+ G+IR++
Sbjct: 285 RVYDNLKRLGM---KATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLR 341
Query: 206 SIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLEN 246
+ ++LQ ++ A + LK GG LVY+TC+V P EN
Sbjct: 342 RDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEEN 382
>pir||C72710 probable fmu protein APE1098 - Aeropyrum pernix (strain K1)
>gi|5104768|dbj|BAA80083.1| (AP000060) 388aa long
hypothetical fmu protein [Aeropyrum pernix]
Length = 388
Score = 89.3 bits (218), Expect = 5e-17
Identities = 70/225 (31%), Positives = 106/225 (47%), Gaps = 20/225 (8%)
Query: 90 GLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRAN 149
GL+ Q +SM LDP+P V++D+ AAPG K + +AQ E I+A D + +
Sbjct: 180 GLVYGQSVTSMYVARALDPRPGWVVVDLNAAPGGKVSHVAQLAGREAVIVAID-RPSKVG 238
Query: 150 ILIANLTRAGVLIAKVTVKDGAYFAR----YENTFDRVLLDAPCSSVGMIRKNFKFARTW 205
L L R G +V D +R D VL+D PC+++G+I K F
Sbjct: 239 RLRETLERLGAGWVRVVGGDSRRASRLLPGLAGRVDAVLVDPPCTNIGVIPKVFDVK--- 295
Query: 206 SIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENEEVVDFLLQKTDAKLEKVK 265
++ SR Q + A++ L+ GG+L YSTCT+ LENE +V A+ E++
Sbjct: 296 TLRDSAAASRYQWMFVEEAWRLLRRGGLLAYSTCTLSSLENELIV--------ARAEELG 347
Query: 266 LPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYIAKIRKP 310
L S + GR+ R P + T F++A + KP
Sbjct: 348 FRLTWSWGLRPSRGRR----SWLGFRWEPHRDGTPGFFLAILEKP 388
>gb|AAK40701.1| Sun (fmu) protein (sun-1) [Sulfolobus solfataricus]
Length = 327
Score = 86.2 bits (210), Expect = 4e-16
Identities = 86/311 (27%), Positives = 136/311 (43%), Gaps = 54/311 (17%)
Query: 11 NKKLVERYSKLDDSEEFWAYLYKPLRPSIRINTLKGNLKEIKALLEEKFELEPIPWTKGE 70
NK +V++ K +S A +YKP S+ IN K + + IP +G+
Sbjct: 57 NKVIVDK--KTAESAMLGANVYKPGLKSVVINNAKDKRVTV-------YSDNGIPVAEGK 107
Query: 71 GFYIKSYDV-----------NYGQLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAA 119
+ + + V L E GLI Q +SM +LDP P+E I+DM A
Sbjct: 108 YYGMNTNLVVEVTNSLYTSPKLADLPELKNGLIYVQGKASMYVAHLLDPHPNEKIVDMTA 167
Query: 120 APGSKTTQMAQYMENEGCIIANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARYE-N 178
G K T + Q +E +I D + L + G+ I + Y+
Sbjct: 168 YAGGKLTHIYQ-LEPRVKLIGFDHTEKKVEKLRDLANKMGMRIEIYKADSRYLYEDYKIG 226
Query: 179 TFDRVLLDAPCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYST 238
D+V++D PCS++G+ K + I + +H + QK+ + +AYK LK GV++YST
Sbjct: 227 DVDKVVIDPPCSALGIRPKLYDHKTKQDI--LNFH-KYQKQFLNSAYKILKKNGVVIYST 283
Query: 239 CTVDPLENEEVVDFLLQKTDAKLEKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDND 298
CTV ENE+V++ D + +E+E IR HP ++
Sbjct: 284 CTVTTWENEKVIN------DPRFS------------VEYE-----------IRFHPHIHE 314
Query: 299 TEAFYIAKIRK 309
F+IAK+ K
Sbjct: 315 ITGFFIAKLIK 325
>gi|8922322 hypothetical protein FLJ10267 [Homo sapiens]
>gi|7022196|dbj|BAA91515.1| (AK001129) unnamed protein
product [Homo sapiens]
Length = 429
Score = 83.5 bits (203), Expect = 3e-15
Identities = 67/230 (29%), Positives = 109/230 (47%), Gaps = 15/230 (6%)
Query: 87 YSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRD 146
Y G +I Q+ +S +P ++LDP P ++D AAPG+KT+ +A ++N+G I A D
Sbjct: 203 YRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAK 262
Query: 147 RANILIANLTRAGVLIAKVTVKDGAYFARYENTFDRV---LLDAPCSSVGMIRKNFK--F 201
R + L RAGV ++ +D + + + V LLD CS GM + +
Sbjct: 263 RLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPG 322
Query: 202 ARTWSIGKVYYHSRLQKRLILAA--YKSLKPGGVLVYSTCTVDPLENEEVVDFLLQKTDA 259
A T S +++ + Q+R + A + SL+ LVYSTC++ ENE+VV LQ+
Sbjct: 323 AGTPSPVRLHALAGFQQRALCHALTFPSLQR---LVYSTCSLCQEENEDVVRDALQQNPG 379
Query: 260 KLEKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYIAKIRK 309
L + P G +R P+ + F++A I +
Sbjct: 380 AFR-----LAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVAVIER 424
>pir||F83643 conserved hypothetical protein PA0017 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9945836|gb|AAG03407.1|AE004441_8 (AE004441)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 434
Score = 83.5 bits (203), Expect = 3e-15
Identities = 63/228 (27%), Positives = 107/228 (46%), Gaps = 14/228 (6%)
Query: 83 QLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIAND 142
+L ++ G + Q+ ++ + L+ P + +LD APG KT + + ++A D
Sbjct: 216 ELPGFAEGRVSVQDEAAQLAAEQLESAPGQRVLDACCAPGGKTCHLLETQPELAEVVAVD 275
Query: 143 AKRDRANILIANLTRAGVLIAKVTVKDGAYFARYENT-FDRVLLDAPCSSVGMIRKNFKF 201
+ R + NL R G+ + V A ++ F R+LLDAPCS+ G+IR++
Sbjct: 276 LEESRLVRVRENLQRLGLQASLVAADARATGEWWDGKPFQRILLDAPCSATGVIRRHPDI 335
Query: 202 ARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENEEVVDFLLQKTDAKL 261
+ + LQ L+ A + +L+ GGVL+Y+TC+V P EN + + L +T
Sbjct: 336 KLARKPEDIAALAHLQGELLDALWPTLEVGGVLLYATCSVMPAENSDSIAAFLARTPGAR 395
Query: 262 EKVKLPLKTSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYIAKIRK 309
E L L + + GR ++ PQ + FY AK+ K
Sbjct: 396 E---LDLPGPWGMKQPHGR----------QLLPQVEGHDGFYYAKLIK 430
>pir||A82744 conserved hypothetical protein XF0928 [imported] - Xylella
fastidiosa (strain 9a5c)
>gi|9105851|gb|AAF83738.1|AE003932_2 (AE003932)
conserved hypothetical protein [Xylella fastidiosa]
Length = 421
Score = 81.1 bits (197), Expect = 1e-14
Identities = 56/177 (31%), Positives = 86/177 (47%), Gaps = 4/177 (2%)
Query: 83 QLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIAND 142
QL + G + Q+ S+ +L P P +LD AAPG K + + C+ A D
Sbjct: 206 QLPGFQAGEVSVQDLSAQQVAALLSPAPHARVLDACAAPGGKAAHLLERAPTL-CLTALD 264
Query: 143 AKRDRANILIANLTRAGVLIAKVTVKDGAYFARYEN--TFDRVLLDAPCSSVGMIRKNFK 200
R + R V A++ V D A + + FD VLLDAPCS+ G++R+
Sbjct: 265 VDMQRLRRVAETCDRIHVK-ARLCVADATDLAAWWDGEAFDAVLLDAPCSATGVVRRQPD 323
Query: 201 FARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENEEVVDFLLQKT 257
+ +Q RL+ A +++L+PGGVLVY TC+V EN+ ++ L +T
Sbjct: 324 VLLHRRAEDLLPLLNIQSRLLDACWRTLRPGGVLVYVTCSVLRAENQTQLEAFLART 380
>gi|11419358 hypothetical protein FLJ10267 [Homo sapiens]
Length = 382
Score = 78.8 bits (191), Expect = 7e-14
Identities = 57/171 (33%), Positives = 91/171 (52%), Gaps = 10/171 (5%)
Query: 87 YSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRD 146
Y G +I Q+ +S +P ++LDP P ++D AAPG+KT+ +A ++N+G I A D
Sbjct: 203 YRAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAK 262
Query: 147 RANILIANLTRAGVLIAKVTVKDGAYFARYENTFDRV---LLDAPCSSVGMIRKNFK--F 201
R + L RAGV ++ +D + + + V LLD CS GM + +
Sbjct: 263 RLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPG 322
Query: 202 ARTWSIGKVYYHSRLQKRLILAA--YKSLKPGGVLVYSTCTVDPLENEEVV 250
A T S +++ + Q+R + A + SL+ LVYSTC++ ENE+VV
Sbjct: 323 AGTPSPVRLHALAGFQQRALCHALTFPSLQR---LVYSTCSLCQEENEDVV 370
>emb|CAB70100.1| (AL132949) contains similarity to Pfam domain: PF01189
(NOL1/NOP2/sun family), Score=57.3, E-value=3e-16, N=2
[Caenorhabditis elegans]
Length = 792
Score = 78.8 bits (191), Expect = 7e-14
Identities = 86/320 (26%), Positives = 134/320 (41%), Gaps = 56/320 (17%)
Query: 40 RINTLKGNLKE-IKALLEEKFEL----------EPIPWTKGEGFYIKS-------YDVNY 81
RINTLK E +K L EK+++ E + K + Y+ + N
Sbjct: 466 RINTLKWTADEAMKTLETEKWKILGTLKPENFAEMVTKMKDDEVYVDPHVENLIIFAPNI 525
Query: 82 GQLIEYSL---GLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCI 138
EY + +I Q+ +S +P +L+P+P + D AAPG KT+ A MEN+G +
Sbjct: 526 QNFYEYWMVEQRYLILQDKASCLPAFLLNPRPGSQVFDTCAAPGMKTSHAAAIMENQGKV 585
Query: 139 IANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARYENTFDRV---LLDAPCSSVGMI 195
A D DR + L + V IA D + F +V ++D PCS G++
Sbjct: 586 WAMDRAADRVATMKQLLDASKVAIASSFCGDFLKTDVTDKKFSKVKFAIVDPPCSGSGIV 645
Query: 196 RK-------NFKFARTWSIGKVYYHSRLQ-----------------KRLI----LAAYKS 227
++ N + R + + H L K+LI + +
Sbjct: 646 KRMDEITGGNAEKERLEKLKNLQVHKNLDLLKMCWKCSENCFKKKTKKLIENDAMILKHA 705
Query: 228 LKPGGV--LVYSTCTVDPLENEEVVDFLLQKTDAKLEKVKLPLKTSEPVIEWEGRKYSDE 285
LK G+ VYSTC+V ENE+VVD +L T + V K P + G K +
Sbjct: 706 LKLPGLKRAVYSTCSVHEEENEQVVDEVLLDTYVRQNYVL--KKNVLPEWTYRGLKTYEV 763
Query: 286 VRKTIRIHPQDNDTEAFYIA 305
+R +P+ T F++A
Sbjct: 764 GEHCLRANPKVTLTNGFFVA 783
>emb|CAB70101.1| (AL132949) contains similarity to Pfam domain: PF01189
(NOL1/NOP2/sun family), Score=57.3, E-value=3e-16,
N=2~cDNA EST yk65h1.3 comes from this gene~cDNA EST
yk65h1.5 comes from this gene~cDNA EST yk274e1.3 comes
from this gene~cDNA EST yk478h4.3 comes>
Length = 469
Score = 78.8 bits (191), Expect = 7e-14
Identities = 86/320 (26%), Positives = 134/320 (41%), Gaps = 56/320 (17%)
Query: 40 RINTLKGNLKE-IKALLEEKFEL----------EPIPWTKGEGFYIKS-------YDVNY 81
RINTLK E +K L EK+++ E + K + Y+ + N
Sbjct: 143 RINTLKWTADEAMKTLETEKWKILGTLKPENFAEMVTKMKDDEVYVDPHVENLIIFAPNI 202
Query: 82 GQLIEYSL---GLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCI 138
EY + +I Q+ +S +P +L+P+P + D AAPG KT+ A MEN+G +
Sbjct: 203 QNFYEYWMVEQRYLILQDKASCLPAFLLNPRPGSQVFDTCAAPGMKTSHAAAIMENQGKV 262
Query: 139 IANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARYENTFDRV---LLDAPCSSVGMI 195
A D DR + L + V IA D + F +V ++D PCS G++
Sbjct: 263 WAMDRAADRVATMKQLLDASKVAIASSFCGDFLKTDVTDKKFSKVKFAIVDPPCSGSGIV 322
Query: 196 RK-------NFKFARTWSIGKVYYHSRLQ-----------------KRLI----LAAYKS 227
++ N + R + + H L K+LI + +
Sbjct: 323 KRMDEITGGNAEKERLEKLKNLQVHKNLDLLKMCWKCSENCFKKKTKKLIENDAMILKHA 382
Query: 228 LKPGGV--LVYSTCTVDPLENEEVVDFLLQKTDAKLEKVKLPLKTSEPVIEWEGRKYSDE 285
LK G+ VYSTC+V ENE+VVD +L T + V K P + G K +
Sbjct: 383 LKLPGLKRAVYSTCSVHEEENEQVVDEVLLDTYVRQNYVL--KKNVLPEWTYRGLKTYEV 440
Query: 286 VRKTIRIHPQDNDTEAFYIA 305
+R +P+ T F++A
Sbjct: 441 GEHCLRANPKVTLTNGFFVA 460
>gb|AAF51412.1| (AE003587) CG4749 gene product [Drosophila melanogaster]
Length = 503
Score = 75.3 bits (182), Expect = 8e-13
Identities = 51/172 (29%), Positives = 87/172 (49%), Gaps = 14/172 (8%)
Query: 96 EASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRANILIANL 155
+ +S +PP+ L KP E +LD A+PG K+ M Q + + ++ ND + R N L +
Sbjct: 276 DGASTLPPLFLQVKPGERVLDACASPGGKSLLMLQTLHLDH-LVCNDIQESRLNKLRKVM 334
Query: 156 TR---------AGVLIAKVTVKDGAYFARYENTFDRVLLDAPCSSVGMI--RKNFKFART 204
AG + ++ D +YE FD++L+D PC++ + ++ +
Sbjct: 335 QEYLFDYKERWAGKRLI-LSQSDARNLDQYEQ-FDKILVDVPCTTDRHVLNEQDNNIFKP 392
Query: 205 WSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENEEVVDFLLQK 256
I + LQ ++ + L+PGG LVYSTC++ P++N+ VV LQK
Sbjct: 393 TRIKERLRIPELQAGILANCLRLLRPGGSLVYSTCSLSPIQNDGVVHMALQK 444
>gb|AAK40477.1| Sun (fmu) protein (sun-2) [Sulfolobus solfataricus]
Length = 368
Score = 74.5 bits (180), Expect = 1e-12
Identities = 77/278 (27%), Positives = 123/278 (43%), Gaps = 33/278 (11%)
Query: 40 RINTLKGNLKEIKALLE-EKFELEPIPWTKGEGFY----IKSYDVNYGQL-IEYSLGLII 93
RIN LK ++ ++ +LE + E EP + FY I V L I LI+
Sbjct: 109 RINLLKTDIDKVYRMLESQNIEFEP-----DKDFYYMIKINRSSVRLSSLSIVKDFKLIL 163
Query: 94 PQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRANILIA 153
+ASS++ L P+ SE ++D+++APG K + EN D R +
Sbjct: 164 HDKASSIVVEA-LKPEISEKLVDLSSAPGIKASLYMMLTENRAETFLADVDLKRLSKEYN 222
Query: 154 NLTRAGVLIAKVTVKDGAYFARYENTF---DRVLLDAPCSSVGMIRKNFKFARTWSIG-K 209
L R GV + KV + Y +N+ D++LLDAPCSS GMI + G K
Sbjct: 223 LLKRCGVDLRKVHI---IYQDSTKNSIIKSDKILLDAPCSSSGMINNDPSILLKLRNGEK 279
Query: 210 VYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENEEVVDFLLQKTDAKLEKVKLPLK 269
+ ++LQK L+ A K LVY+ C++ P E E+V++ + + +
Sbjct: 280 IEKFTKLQKSLLNEALKI--KSNKLVYAVCSLFPEEGEKVIEDYYEIAEKPFSNYQ---- 333
Query: 270 TSEPVIEWEGRKYSDEVRKTIRIHPQDNDTEAFYIAKI 307
G +++ R P + TE F+I+ +
Sbjct: 334 --------SGYSLFKSGKRSNRTFPHIDSTEGFFISTL 363
>gi|11416925 hypothetical protein FLJ20303 [Homo sapiens]
Length = 559
Score = 73.7 bits (178), Expect = 3e-12
Identities = 48/157 (30%), Positives = 74/157 (46%), Gaps = 14/157 (8%)
Query: 136 GCIIANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARYENT---------FDRVLLD 186
G +IAND R +L+ R V D + R + +DR+L D
Sbjct: 1 GFVIANDVDNKRCYLLVHQAKRLSSPCIMVVNHDASSIPRLQIDVDGRKEILFYDRILCD 60
Query: 187 APCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLEN 246
PCS G +RKN + W+ LQ R+ + L GG +VYSTC+++P+E+
Sbjct: 61 VPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIED 120
Query: 247 EEVVDFLLQKTDAKLEKV----KLP-LKTSEPVIEWE 278
E V+ LL+K++ LE +LP LK + +W+
Sbjct: 121 EAVIASLLEKSEGALELADVSNELPGLKWMPGITQWK 157
>gi|11545785 hypothetical protein FLJ22609 [Homo sapiens]
>gi|10439061|dbj|BAB15417.1| (AK026262) unnamed protein
product [Homo sapiens]
Length = 340
Score = 73.0 bits (176), Expect = 4e-12
Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 15/168 (8%)
Query: 97 ASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRANILIANLT 156
A+S++P + L+ + E +LD+ AAPG K+ + Q G + N+ R L L
Sbjct: 118 AASLLPVLALELRDGEKVLDLCAAPGGKSIALLQ-CACPGYLHCNEYDSLRLRWLRQTLE 176
Query: 157 ----RAGVLIAKVTVKDGAYFARYE-NTFDRVLLDAPCSSVGMIRKNFKFARTWSIGKVY 211
+ + + KV+ DG + FD+VL+DAPCS+ +++ F+
Sbjct: 177 SFIPQPLINVIKVSELDGRKMGDAQPEMFDKVLVDAPCSN----DRSWLFSSDSQKASCR 232
Query: 212 YHSR-----LQKRLILAAYKSLKPGGVLVYSTCTVDPLENEEVVDFLL 254
R LQ L+ +A K+L+PGG+LVYSTCT+ EN++V+ +L
Sbjct: 233 ISQRRNLPLLQIELLRSAIKALRPGGILVYSTCTLSKAENQDVISEIL 280
>pir||T06106 hypothetical protein T5J17.170 - Arabidopsis thaliana
>gi|4490751|emb|CAB38913.1| (AL035708)
proliferating-cell nucleolar antigen-like protein
[Arabidopsis thaliana] >gi|7271055|emb|CAB80663.1|
(AL161596) proliferating-cell nucleolar antigen-like
protein [Arabidopsis thaliana]
Length = 682
Score = 72.6 bits (175), Expect = 6e-12
Identities = 49/153 (32%), Positives = 69/153 (45%), Gaps = 18/153 (11%)
Query: 138 IIANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARYENT------------------ 179
++AND R+N+LI R VT +G +F
Sbjct: 113 VVANDVDYKRSNLLIHQTKRTCTTNLMVTNNEGQHFPSCNTKRTLSVASETNPHPIDQLL 172
Query: 180 FDRVLLDAPCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTC 239
FDRVL D PCS G +RK R W+ G LQ L + LK GG +VYSTC
Sbjct: 173 FDRVLCDVPCSGDGTLRKAPDIWRRWNSGSGNGLHSLQVVLAMRGLSLLKVGGRMVYSTC 232
Query: 240 TVDPLENEEVVDFLLQKTDAKLEKVKLPLKTSE 272
+++P+E+E VV +L++ +E V + K E
Sbjct: 233 SMNPIEDEAVVAEILRRCGCSVELVDVSDKLPE 265
>pir||B81236 16S RNA methyltransferase NMB0112 [imported] - Neisseria
meningitidis (group B strain MD58)
>gi|7225328|gb|AAF40571.1| (AE002370) 16S RNA
methyltransferase [Neisseria meningitidis MC58]
Length = 419
Score = 71.0 bits (171), Expect = 2e-11
Identities = 58/196 (29%), Positives = 94/196 (47%), Gaps = 7/196 (3%)
Query: 79 VNYGQLIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCI 138
V +L +S G++ Q+ + +L+PK E ILD AAPG KT + + + +
Sbjct: 213 VPVNRLPGFSDGIVSVQDFGAQQAAYLLNPKDGERILDACAAPGGKTGHILELADCR--V 270
Query: 139 IANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARYEN--TFDRVLLDAPCSSVGMIR 196
A D R + N+ R G A D + + + FD VL D PC++ G+ R
Sbjct: 271 TALDIDAGRLKRVEDNIARLGFQTASTACADAQDLSAWYDGKPFDAVLADVPCTASGVAR 330
Query: 197 KNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLENE-EVVDFLLQ 255
+N +R Q+ L+ A ++ LK GG ++ +TC+V EN+ ++ FL +
Sbjct: 331 RNPDVKWLRRPTDALKTARQQEALLDALWQVLKSGGRMLIATCSVFVEENDGQLQKFLNR 390
Query: 256 KTDAKL--EKVKLPLK 269
DA+L +V LP K
Sbjct: 391 HADAELIESRVLLPNK 406
>pir||G82009 SUN homolog NMA0162 [imported] - Neisseria meningitidis (group A
strain Z2491) >gi|7378933|emb|CAB83476.1| (AL162752) SUN
homolog [Neisseria meningitidis Z2491]
Length = 419
Score = 70.6 bits (170), Expect = 2e-11
Identities = 65/238 (27%), Positives = 110/238 (45%), Gaps = 12/238 (5%)
Query: 38 SIRINTLKGNLKEIKALLEEKFELEPIPWTKGEGFYIKSYD-VNYGQLIEYSLGLIIPQE 96
++R+N GN + EK E I + + + + V +L +S G++ Q+
Sbjct: 175 TLRVNRRHGNAESYL----EKLAAEGIAAKALDEYAVTLEEAVPVNRLPGFSDGIVSVQD 230
Query: 97 ASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMENEGCIIANDAKRDRANILIANLT 156
+ +L+PK E ILD AAPG KT + + + + A D R + N+
Sbjct: 231 FGAQQAAYLLNPKDGERILDACAAPGGKTGHILELADCR--VTALDIDAGRLKRVEDNIA 288
Query: 157 RAGVLIAKVTVKDGAYFARYEN--TFDRVLLDAPCSSVGMIRKNFKFARTWSIGKVYYHS 214
R G A D A + + FD +L D PC++ G+ R+N +
Sbjct: 289 RLGFQTASAACADARDLAAWYDGKPFDTILADVPCTASGVARRNPDVKWLRRPTDALKTA 348
Query: 215 RLQKRLILAAYKSLKPGGVLVYSTCTVDPLENE-EVVDFLLQKTDAK--LEKVKLPLK 269
R Q+ L+ A +++LK GG ++ +TC+V EN+ ++ FL + DA+ +V LP K
Sbjct: 349 RQQEALLDALWQTLKQGGRMLLATCSVFVEENDGQLQKFLNRHADAEPIESRVLLPNK 406
>gb|AAF24826.1|AC007592_19 (AC007592) F12K11.10 [Arabidopsis thaliana]
Length = 365
Score = 70.2 bits (169), Expect = 3e-11
Identities = 35/79 (44%), Positives = 53/79 (66%), Gaps = 2/79 (2%)
Query: 178 NTFDRVLLDAPCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYS 237
N+FDRVLLDAPCS++G+ + F T + + H Q++++ A + ++ GG+LVYS
Sbjct: 223 NSFDRVLLDAPCSALGLRPRLFAGLET--VVSLRNHGWYQRKMLDQAVQLVRVGGILVYS 280
Query: 238 TCTVDPLENEEVVDFLLQK 256
TCT++P ENE VV + L K
Sbjct: 281 TCTINPSENEAVVRYALDK 299
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.136 0.394
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116925399
Number of Sequences: 2977
Number of extensions: 4985370
Number of successful extensions: 15426
Number of sequences better than 1.0e-10: 73
Number of HSP's better than 0.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 15239
Number of HSP's gapped (non-prelim): 79
length of query: 311
length of database: 189,106,746
effective HSP length: 56
effective length of query: 255
effective length of database: 155,591,474
effective search space: 39675825870
effective search space used: 39675825870
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)