BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1949 577023 576652 -124 !not a gene!
         (124 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAB57570.1| (Y18930) hypothetical protein [Sulfolobus solfat...    73  1e-12

>emb|CAB57570.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
          Length = 107
          
 Score = 73.0 bits (176), Expect = 1e-12
 Identities = 42/74 (56%), Positives = 50/74 (66%)

Query: 1  MSSSLLRSRTISPSILPAAHAATRSLIGIPASAKAKEAAVIPATLVPASAWRTSMKTSIA 60
          +SS   +SR I+PS  P A  A +SLIGIPASA AKEAA+    L PASA   S+ TSIA
Sbjct: 7  ISSVSFKSRIITPSAFPTATPAIKSLIGIPASASAKEAAINETNLDPASACNISVNTSIA 66

Query: 61 VLGNISSIKAGSRA 74
          VLGN S+  A S+A
Sbjct: 67 VLGNSSTKTADSKA 80


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.127    0.357 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31571230
Number of Sequences: 2977
Number of extensions: 829716
Number of successful extensions: 3151
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3150
Number of HSP's gapped (non-prelim): 1
length of query: 124
length of database: 189,106,746
effective HSP length: 58
effective length of query: 66
effective length of database: 154,394,500
effective search space: 10190037000
effective search space used: 10190037000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 160 (66.7 bits)