BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1954 (PAB1954) DE:Hypothetical protein
(354 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75180 hypothetical protein PAB1954 - Pyrococcus abyssi (st... 699 0.0
pir||B75066 hypothetical protein PAB1359 - Pyrococcus abyssi (st... 325 4e-88
pir||D75039 hypothetical protein PAB0862 - Pyrococcus abyssi (st... 325 5e-88
pir||G71167 hypothetical protein PH0539 - Pyrococcus horikoshii ... 321 1e-86
pir||A75075 hypothetical protein PAB0664 - Pyrococcus abyssi (st... 267 1e-70
pir||F75064 hypothetical protein PAB1370 - Pyrococcus abyssi (st... 248 8e-65
pir||B75192 hypothetical protein PAB2304 - Pyrococcus abyssi (st... 243 2e-63
pir||B75097 hypothetical protein PAB1597 - Pyrococcus abyssi (st... 234 1e-60
pir||C72308 conserved hypothetical protein - Thermotoga maritima... 230 2e-59
pir||H71100 hypothetical protein PH1067 - Pyrococcus horikoshii ... 228 6e-59
gb|AAK41763.1| Conserved hypothetical protein [Sulfolobus solfat... 201 1e-50
gb|AAK42134.1| Conserved hypothetical protein [Sulfolobus solfat... 169 5e-41
gb|AAK41567.1| Conserved hypothetical protein [Sulfolobus solfat... 125 1e-27
pir||F71154 hypothetical protein PH0437 - Pyrococcus horikoshii ... 117 2e-25
pir||C75221 hypothetical protein PAB2152 - Pyrococcus abyssi (st... 103 3e-21
pir||H75092 hypothetical protein PAB1618 - Pyrococcus abyssi (st... 101 1e-20
gb|AAK42841.1| Conserved hypothetical protein [Sulfolobus solfat... 100 3e-20
gb|AAK41566.1| Conserved hypothetical protein [Sulfolobus solfat... 99 5e-20
gb|AAK42317.1| Conserved hypothetical protein [Sulfolobus solfat... 96 6e-19
pir||S74051 hypothetical protein c0115 - Sulfolobus solfataricus... 96 6e-19
gb|AAK42280.1| Conserved hypothetical protein [Sulfolobus solfat... 80 3e-14
pir||S78016 hypothetical protein c0628 - Sulfolobus solfataricus... 80 3e-14
gb|AAK41444.1| Conserved hypothetical protein [Sulfolobus solfat... 71 2e-11
>pir||E75180 hypothetical protein PAB1954 - Pyrococcus abyssi (strain Orsay)
>gi|5458034|emb|CAB49524.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 354
Score = 699 bits (1784), Expect = 0.0
Identities = 354/354 (100%), Positives = 354/354 (100%)
Query: 1 MLFNPKPKTRREDLYNREEELSEIERSIKKGVPLVILLGIRRLGKSSLLNVALNEIPIKS 60
MLFNPKPKTRREDLYNREEELSEIERSIKKGVPLVILLGIRRLGKSSLLNVALNEIPIKS
Sbjct: 1 MLFNPKPKTRREDLYNREEELSEIERSIKKGVPLVILLGIRRLGKSSLLNVALNEIPIKS 60
Query: 61 VKIDARKIYSQFGSVPHTALAEIILKEYTKTTPRERIKDVLKGIRGVSIGGVNLELRTNK 120
VKIDARKIYSQFGSVPHTALAEIILKEYTKTTPRERIKDVLKGIRGVSIGGVNLELRTNK
Sbjct: 61 VKIDARKIYSQFGSVPHTALAEIILKEYTKTTPRERIKDVLKGIRGVSIGGVNLELRTNK 120
Query: 121 SVSLSEVLERINSLGERFVIAIDEAQYLRFSNAKYPDLISWAIDDLGNISFILTGSEVGL 180
SVSLSEVLERINSLGERFVIAIDEAQYLRFSNAKYPDLISWAIDDLGNISFILTGSEVGL
Sbjct: 121 SVSLSEVLERINSLGERFVIAIDEAQYLRFSNAKYPDLISWAIDDLGNISFILTGSEVGL 180
Query: 181 LEDFLRIHDPESPLFGRAHVEIRLNRFNRYQSLDFLRKGFEEVGIKVEEEELEEVVDELD 240
LEDFLRIHDPESPLFGRAHVEIRLNRFNRYQSLDFLRKGFEEVGIKVEEEELEEVVDELD
Sbjct: 181 LEDFLRIHDPESPLFGRAHVEIRLNRFNRYQSLDFLRKGFEEVGIKVEEEELEEVVDELD 240
Query: 241 GIVGWLTLYGYNRYLGLSHRKALKKLKEDAKRLILNEFSKLKELSPRYELAMKAVASGKH 300
GIVGWLTLYGYNRYLGLSHRKALKKLKEDAKRLILNEFSKLKELSPRYELAMKAVASGKH
Sbjct: 241 GIVGWLTLYGYNRYLGLSHRKALKKLKEDAKRLILNEFSKLKELSPRYELAMKAVASGKH 300
Query: 301 RWKEIKEAVELLEGKRIDDKNFSNVLNNLVRYDYLEKTTKGYFIPDPLVELAFR 354
RWKEIKEAVELLEGKRIDDKNFSNVLNNLVRYDYLEKTTKGYFIPDPLVELAFR
Sbjct: 301 RWKEIKEAVELLEGKRIDDKNFSNVLNNLVRYDYLEKTTKGYFIPDPLVELAFR 354
>pir||B75066 hypothetical protein PAB1359 - Pyrococcus abyssi (strain Orsay)
>gi|5458936|emb|CAB50423.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 357
Score = 325 bits (825), Expect = 4e-88
Identities = 171/359 (47%), Positives = 251/359 (69%), Gaps = 9/359 (2%)
Query: 1 MLFNPKPKTRREDLYNREEELSEIERSIKKGVPLVILLGIRRLGKSSLLNVALNEIPIKS 60
MLF+P PKT+RE+L++RE+EL E++++I+ G L++LLG+RRLGKSSLLNVAL E+ S
Sbjct: 1 MLFSPYPKTKREELFDREKELEELKKAIESGERLILLLGLRRLGKSSLLNVALGELSYPS 60
Query: 61 VKIDARKIYSQFGSVPHTALAEIILKEYTKTTPRERIKDVLKGIRGVSIGGVNLELRTNK 120
+K+D RK YS+F SV + ++L + E K+ L+ ++G+SI GV +++ + +
Sbjct: 61 IKVDVRKTYSEFSSVNRYVVGRMLLSAISGKL--EEAKNFLRRVKGISISGVRIDV-SPR 117
Query: 121 SVSLSEVLERINSLGER---FVIAIDEAQYLRFSNA-KYPDLISWAIDDLGNISFILTGS 176
S+ E+LE +N GER +IA DEAQYLRF A +Y ++++AID+L N++FILTGS
Sbjct: 118 DFSIVELLEALNDYGERTGRVIIAFDEAQYLRFGGATRYDGILAYAIDNLDNLTFILTGS 177
Query: 177 EVGLLEDFLRIHDPESPLFGRAHVEIRLNRFNRYQSLDFLRKGFEEVGIKVEEEELEEVV 236
EVGLL DFL+ ++P +PLFGR H +I L +FN S +FL KGFEE+ KV E E+E+ V
Sbjct: 178 EVGLLFDFLKFNEPGAPLFGRYHHDIILEKFNSEMSAEFLEKGFEEMRFKVSELEIEKAV 237
Query: 237 DELDGIVGWLTLYGYNRYL-GLSHRKALKKLKEDAKRLILNEFSKLKELSPRYELAMKAV 295
+ELDGIVGWLTLYGY R + H A++++ +A+ ++ E S+L SPRY+ +KA+
Sbjct: 238 EELDGIVGWLTLYGYIRVTRKVKHEDAMEEILREARLILSTELSRLFSYSPRYKGILKAI 297
Query: 296 ASGKHRWKEIKEAVELLEGKRIDDKNFSNVLNNLVRYDYLEKTTKGYFIPDPLVELAFR 354
+ G RW++IK+ + L G I+D NFS++L NLV+ Y+EK Y I DP++E FR
Sbjct: 298 SLGYSRWRDIKDYLTLKLG-YINDSNFSSLLENLVKSGYVEKRNGRYKISDPVLERVFR 355
>pir||D75039 hypothetical protein PAB0862 - Pyrococcus abyssi (strain Orsay)
>gi|5458722|emb|CAB50209.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 361
Score = 325 bits (824), Expect = 5e-88
Identities = 176/357 (49%), Positives = 237/357 (66%), Gaps = 10/357 (2%)
Query: 1 MLFNPKPKTRREDLYNREEELSEIERSIKKGVPLVILLGIRRLGKSSLLNVALNEIPIKS 60
MLF+P+PKT ++DLY+RE EL E + ++K G +++LLGIRRLGKSSLLNV L E
Sbjct: 1 MLFDPRPKTEKKDLYDRERELKEFQEALKLGENIILLLGIRRLGKSSLLNVGLKESNFPY 60
Query: 61 VKIDARKIYSQFGSVPHTALAEIILKEY--TKTTPRERIKDVLKGIRGVSIGGVNLELRT 118
K+D R +Y +G++P LA I++ ++ + ++ +L+ I+G+ I G+++E
Sbjct: 61 SKVDVRSLYFAYGTIPQDVLARKIIESLLASEKSLYLTLRKILESIKGIKISGIHVEFER 120
Query: 119 NKSVSLSEVLERINSLGER----FVIAIDEAQYLRFSNAKYPDLISWAIDDLGNISFILT 174
+ L + ERI+ ER VIA DEAQYLR S +Y LI++AID+L NI FILT
Sbjct: 121 RQD--LPSIFERIDLWAEREGKKVVIAFDEAQYLRLSGVRYDGLIAYAIDNLPNIIFILT 178
Query: 175 GSEVGLLEDFLRIHDPESPLFGRAHVEIRLNRFNRYQSLDFLRKGFEEVGIKVEEEELEE 234
GSEVG+L DFL + +P+ PLFGR + EI L+RF R +S DFLR+GFEE+ + +EE+EE
Sbjct: 179 GSEVGMLHDFLGLDNPKKPLFGRQYEEIVLDRFTRDESFDFLRRGFEELNANIPDEEIEE 238
Query: 235 VVDELDGIVGWLTLYGYNRYL-GLSHRKALKKLKEDAKRLILNEFSKLKELSPRYELAMK 293
VV+ +DGIVGWLTLYGY R + L ++L L AK LI E S + S RY+ +K
Sbjct: 239 VVNRIDGIVGWLTLYGYLRGVKKLGKEESLISLYSKAKALIEEELSHILAYSKRYKFILK 298
Query: 294 AVASGKHRWKEIKEAVELLEGKRIDDKNFSNVLNNLVRYDYLEKTTKGYFIPDPLVE 350
AVA G RWK IKE VE G RI+D FSN+L NLV+Y YLEK Y IPDPLV+
Sbjct: 299 AVALGNTRWKNIKEYVEFRTG-RINDAKFSNLLKNLVKYGYLEKRDGEYIIPDPLVK 354
>pir||G71167 hypothetical protein PH0539 - Pyrococcus horikoshii
>gi|3256945|dbj|BAA29628.1| (AP000002) 362aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 362
Score = 321 bits (813), Expect = 1e-86
Identities = 169/355 (47%), Positives = 245/355 (68%), Gaps = 8/355 (2%)
Query: 1 MLFNPKPKTRREDLYNREEELSEIERSIKKGVPLVILLGIRRLGKSSLLNVALNEIPIKS 60
MLF+P PK +RE+L++RE+EL EIE ++K+G L++LLG RR+GKSS+LNVAL+E+P S
Sbjct: 4 MLFSPYPKVKREELFDREKELKEIEEAVKRGERLLLLLGPRRIGKSSILNVALSELPYPS 63
Query: 61 VKIDARKIYSQFGSVPHTALAEIILKEYT-KTTPRERIKDVLKGIRGVSIGGVNLELRTN 119
VK+D RK+YS++ SV + +++L + E + L+ ++GV I GVN+E+
Sbjct: 64 VKVDVRKVYSEYSSVNRYIIGKMLLSALRGRKRLFEEARMFLEKVKGVRISGVNIEINP- 122
Query: 120 KSVSLSEVLERINSLGE---RFVIAIDEAQYLRFSNA-KYPDLISWAIDDLGNISFILTG 175
K SL+E+LE +N G R +IA DEAQYLRF A +Y +I++AID+L N++FILTG
Sbjct: 123 KGFSLAELLEVLNEYGSEKGRIIIAFDEAQYLRFGGATRYDGIIAYAIDNLENLTFILTG 182
Query: 176 SEVGLLEDFLRIHDPESPLFGRAHVEIRLNRFNRYQSLDFLRKGFEEVGIKVEEEELEEV 235
SEVGLL DFL+ DP++PLFGR H +I + RF+ SL+FL GF E G++VE ELE+
Sbjct: 183 SEVGLLYDFLKFEDPKAPLFGRYHHDIFIQRFSSDMSLEFLMAGFREAGVEVERRELEKA 242
Query: 236 VDELDGIVGWLTLYGYNRYL-GLSHRKALKKLKEDAKRLILNEFSKLKELSPRYELAMKA 294
V+ELDGI GWL LYGY R L+H + ++ ++A ++ E S+L SPRY +KA
Sbjct: 243 VEELDGIPGWLALYGYIRVTKKLNHEDCMLEVIKEASSIVNKELSRLFSYSPRYRFILKA 302
Query: 295 VASGKHRWKEIKEAVELLEGKRIDDKNFSNVLNNLVRYDYLEKTTKGYFIPDPLV 349
+A G RW++IK+ + L G I+D NFS +L+NLV++ Y+E+ Y I DP++
Sbjct: 303 IALGYSRWRDIKDYLTLKVGP-INDANFSKLLDNLVKHGYVERRDGRYVITDPVL 356
>pir||A75075 hypothetical protein PAB0664 - Pyrococcus abyssi (strain Orsay)
>gi|5458414|emb|CAB49902.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 361
Score = 267 bits (676), Expect = 1e-70
Identities = 153/363 (42%), Positives = 233/363 (64%), Gaps = 21/363 (5%)
Query: 1 MLFNPKPKTRREDLYNREEELSEIERSIKKGVPLVILLGIRRLGKSSLLNVALNEIPIKS 60
MLF+P+PK +RED+++RE+E+ EIE +I+ P+ ++LGIRR+GKSSLL LNE+
Sbjct: 1 MLFDPRPKEKREDIFDREKEIDEIESAIRD-YPITLILGIRRVGKSSLLKAVLNEME-GG 58
Query: 61 VKIDARKIYSQFGS-VPHTALAEIILKEYTKTTPRERIKDVL----KGIRGVSIGGVNLE 115
+ ID RK+Y + G + + LA+ + E + +E K +L K I G+S+ GV +
Sbjct: 59 IYIDVRKLYFESGGWITNVHLAKAL--EEAINSLKEPFKRILISSLKSIEGISVSGV--K 114
Query: 116 LRTNKSVSLSEVLERINSLGERFVIAIDEAQYLRF----SNAKYPDLISWAIDDLGNISF 171
+R VSLS +LER+N GE ++A DEAQYL+F ++ ++++A D+L N+SF
Sbjct: 115 VRFTHRVSLSSLLERLNEQGE-VILAFDEAQYLKFYGKSGRKEFLAMVAYAYDNLPNVSF 173
Query: 172 ILTGSEVGLLEDFLRIHDPESPLFGRAHVEIRLNRFNRYQSLDFLRKGFEEVGIKVEEEE 231
+ TGSEVGLL DF+ + D +SP++GR + E+ + F+R S+ FLR GFEE G++V+EEE
Sbjct: 174 VFTGSEVGLLHDFVGVSDYDSPIYGRVYREVTIEPFSRETSISFLRAGFEEAGVEVKEEE 233
Query: 232 LEEVVDELDGIVGWLTLYGYNRYLGLSHRKALKKLKEDAKRLILNEFSKLKELSPRYELA 291
++E VD L GI GWL +GY+ S +A++ + + A+ L+ E +LK+ SPRY L
Sbjct: 234 IKEAVDVLGGIPGWLVEFGYHYVKLGSFEEAMRMVLKRAEELVKGELEELKKRSPRYVLV 293
Query: 292 MKAVASGKHRWKEIKEAVELLEGKRIDDKNFSNVLNNLVRYDYL----EKTTKGYFIPDP 347
+KA++ G +RWK IKE VE G RI + +++L NL ++ E K Y I DP
Sbjct: 294 LKAISLGFNRWKSIKEFVEARSG-RIPNSRLASILENLQNMSWIRPVFEDNEKRYKILDP 352
Query: 348 LVE 350
+VE
Sbjct: 353 VVE 355
>pir||F75064 hypothetical protein PAB1370 - Pyrococcus abyssi (strain Orsay)
>gi|5458924|emb|CAB50411.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 387
Score = 248 bits (626), Expect = 8e-65
Identities = 146/370 (39%), Positives = 219/370 (58%), Gaps = 25/370 (6%)
Query: 1 MLFNPKPKTRREDLYNREEELSEIERSIKKGVPLVILLGIRRLGKSSLLNVALNEIPIKS 60
+ F+ +PK++REDLY+REEEL E+ I++ PL++L GIRRLGK+SLL VALNE +
Sbjct: 24 LYFDERPKSKREDLYDREEELEELLTLIEERKPLIVLKGIRRLGKTSLLRVALNEAKVPH 83
Query: 61 VKIDARKI--------YSQFGSVPHTALAEIILKEYTKTTPRERIKDVLKGIRGVSIGGV 112
V +D R + Y +F S AL + +L+ +++KD LK + G+S+ G
Sbjct: 84 VIVDLRGVNPNSRRDLYLRFQS----ALNDYLLRNKPIA---KKVKDALKMVSGISVSGF 136
Query: 113 NLELRTNKSVSLSEVLERINSLGERFVIAIDEAQYLRFSNAKYPDLISWAIDDLGNISFI 172
++ + +L ++ + E FVIA+DE Q R K + D G ++F+
Sbjct: 137 SVSISWKNLETLYSLISALER--ENFVIALDEVQEARGLVGKELASLIAHFYDYGEVTFV 194
Query: 173 LTGSEVGLLEDFLRIHDPESPLFGRAHVEIRLNRFNRYQSLDFLRKGFEEVGIKVEEEEL 232
LTGSEVGLL DFL I +P +PL+GRA EI L RF R QS++FLR+GF +V V +E L
Sbjct: 195 LTGSEVGLLYDFLGIDNPRAPLYGRAFHEIELKRFTREQSIEFLREGFRQVRFYVNDEIL 254
Query: 233 EEVVDELDGIVGWLTLYGYNRYLGLSHRKALKKLKEDAKRLILNEFSKLKE----LSPRY 288
+ V+ LDGIVGWL +G + R+ L+++ ++A L+L+E K + RY
Sbjct: 255 KLAVERLDGIVGWLVKFGVLSLRSGASREVLERVLKEASALVLSELDKFLDKRFIARKRY 314
Query: 289 ELAMKAVASGKHRWKEIKEAVELLEGKRIDDKNFSNVLNNLVRYDYLEKTTKG----YFI 344
+ +KA+ASGK W EIKE +E +E + I D + +LN+L++ +EK +G Y I
Sbjct: 315 LIVLKAIASGKATWSEIKEELERVEKREISDGRLAGILNSLLKASLIEKVVEGRNVRYRI 374
Query: 345 PDPLVELAFR 354
DP++E A R
Sbjct: 375 VDPVLEFALR 384
>pir||B75192 hypothetical protein PAB2304 - Pyrococcus abyssi (strain Orsay)
>gi|5457494|emb|CAB48985.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 350
Score = 243 bits (614), Expect = 2e-63
Identities = 145/361 (40%), Positives = 218/361 (60%), Gaps = 19/361 (5%)
Query: 1 MLFNPKPKTRREDLYNREEELSEIERSIKKGVPLVILLGIRRLGKSSLLNVALNEIPIKS 60
MLF+ +PKTRRED+++REEE ++E S++ PL +LLGIRR+GKSSLL LNE P
Sbjct: 1 MLFDLRPKTRREDIFDREEEFRKLEESLEN-YPLTLLLGIRRVGKSSLLRAFLNERP--G 57
Query: 61 VKIDARKIYSQFGSVPHTALAEIILKEYTKTTPRERIKDVLKGIRGVSIGGVNLELRTNK 120
+ ID R++Y++ G H E+I + + +P ++ + K +S+ L L K
Sbjct: 58 ILIDCRELYAERG---HITREELIKELQSTISPFQKFQSKFK----ISLNLKFLTLEPRK 110
Query: 121 SVSLSEVLERINSLGER---FVIAIDEAQYLRFSNAKYPD----LISWAIDDLGNISFIL 173
+SL EV +N LGE F++A DEAQYLRF ++ L ++A D L N+ IL
Sbjct: 111 -LSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIIL 169
Query: 174 TGSEVGLLEDFLRIHDPESPLFGRAHVEIRLNRFNRYQSLDFLRKGFEEVGIKVEEEELE 233
TGSEVGLL DFL+I D ESPL+GR E+ + F++ S++FL++GF EV + V E E+E
Sbjct: 170 TGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIE 229
Query: 234 EVVDELDGIVGWLTLYGYNRYLGLSHRKALKKLKEDAKRLILNEFSKLKELSPRYELAMK 293
E V+ LDGI GWL ++G +A+K+ E AK LI+ E +L+ SPRY ++
Sbjct: 230 EAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILR 289
Query: 294 AVASGKHRWKEIKEAVELLEGKRIDDKNFSNVLNNLVRYDYLEKTTKGYFIPDPLVELAF 353
A+A G +RW I++ + ++G +I + +L NL + +++ + Y I DP+V
Sbjct: 290 AIALGYNRWSLIRDYL-AVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVVATVL 348
Query: 354 R 354
R
Sbjct: 349 R 349
>pir||B75097 hypothetical protein PAB1597 - Pyrococcus abyssi (strain Orsay)
>gi|5458591|emb|CAB50079.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 348
Score = 234 bits (590), Expect = 1e-60
Identities = 150/369 (40%), Positives = 216/369 (57%), Gaps = 38/369 (10%)
Query: 1 MLFNPKPKTRREDLYNREEELSEIERSIKKGVPLVILLGIRRLGKSSLLNVALNEIPIKS 60
MLF+PKPK R+EDL++REEEL+E+ SI K P+ +LLGIRR GKSS++ V+LNEI
Sbjct: 1 MLFDPKPKERKEDLFDREEELAELISSITK-YPITLLLGIRRTGKSSIIKVSLNEIDAIG 59
Query: 61 VKIDARKIYSQFGSVPHTALAEIILKEYTKTTPRERIK-DVLKGIRG--VSIGGVNLELR 117
+ ID RK G V ER+K +L IR ++I G+ LE
Sbjct: 60 IYIDVRKAMKG-GRVSE-----------------ERLKLQLLGNIRRLRINIPGIKLE-- 99
Query: 118 TNKSVSLSEVLERINSLGER----FVIAIDEAQYLRFSNAKYPD----LISWAIDDLGNI 169
+ ++++ + +NS G + V+A DEAQY RF ++ + ++++ D+ I
Sbjct: 100 -PTPLDMTDIFDLLNSYGRKRRKIIVLAFDEAQYFRFYGSRGGEDFLLAVAYSYDNHEWI 158
Query: 170 SFILTGSEVGLLEDFLRIHDPESPLFGRAHVEIRLNRFNRYQSLDFLRKGFEEVGIKVEE 229
F+ +GSEVGLL DFL D ++PLFGR + EI L F R S++FLR+GF EV + V +
Sbjct: 159 RFLFSGSEVGLLHDFLGFDDSKAPLFGRIYNEITLEPFPRDLSIEFLREGFREVNLNVPQ 218
Query: 230 EELEEVVDELDGIVGWLTLYGYNRYLGLSHRKALKKLKEDAKRLILNEFSKLKELSPRYE 289
E +E VDELDG+ GWL YGY+ HR+AL++ ++A LI +E S+L+ S RY
Sbjct: 219 EHIEVAVDELDGVPGWLVEYGYHYVHTRDHREALERTLQNALSLIRSELSELERRSERYV 278
Query: 290 LAMKAVASGKHRWKEIKEAVELLEGKRIDDKNFSNVLNNLVRYDY----LEKTTKGYFIP 345
+KA++ G +RW +IKE VE G I + FS +L NL + + L+ K Y I
Sbjct: 279 AILKAISLGINRWSKIKEYVEAKHGS-ITNARFSALLKNLEKMSWIRAELKDGRKVYRIV 337
Query: 346 DPLVELAFR 354
DP+VE R
Sbjct: 338 DPVVERVIR 346
>pir||C72308 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4981538|gb|AAD36076.1|AE001762_3 (AE001762)
conserved hypothetical protein [Thermotoga maritima]
Length = 365
Score = 230 bits (581), Expect = 2e-59
Identities = 130/363 (35%), Positives = 219/363 (59%), Gaps = 13/363 (3%)
Query: 1 MLFNPKPKTRREDLYNREEELSEIERSIKKGVPLVILLGIRRLGKSSLLNVALNEIPIKS 60
+LF+ PKT++EDL++RE EL ++E+ ++ P+V++ G+RR+GKSSL+ V LN+ +
Sbjct: 6 LLFSLTPKTKKEDLFDRERELKDLEKLLET-YPIVVITGLRRVGKSSLVKVFLNKSDLLH 64
Query: 61 VKIDARKIY-SQFGSVPHTALAEIILKEYTKTTPRERIKDVLKGIRGVSIGGVNLELRTN 119
+ +D R++Y + G++ L + +E ++ + +++ +VLK +RG+++ G ++EL
Sbjct: 65 ITVDGRRLYETSGGNISSHHLTRFLGEELSRISKSQKLLNVLKRVRGITVSGTSIELNP- 123
Query: 120 KSVSLSEVLERINSLGER----FVIAIDEAQYLRFSNAKYPD----LISWAIDDLGNISF 171
K SLS++LE++N +R VI DEAQYLR+ ++ + L ++ D+ N+ F
Sbjct: 124 KEFSLSDLLEKLNETAKRRKKKIVIFFDEAQYLRYYGSRGGNDLLALFAYCYDNFENVRF 183
Query: 172 ILTGSEVGLLEDFLRIHDPESPLFGRAHVEIRLNRFNRYQSLDFLRKGFEEVGIKVEEEE 231
I++GSEVG+L DFL++ D SPL GR + + F QS+DFL +GF EVG K+ +
Sbjct: 184 IISGSEVGVLHDFLKLEDYSSPLHGRGIGFLTVRPFTFDQSVDFLMEGFREVGEKI-NFD 242
Query: 232 LEEVVDELDGIVGWLTLYGYNRYLGLSHRKALKKLKEDAKRLILNEFSKLKELSPRYELA 291
+EE+V E+DGIVG+L L+G +ALK++ K L E +L++ S RY
Sbjct: 243 VEEIVREIDGIVGYLVLFGVKYLEKKKKDEALKEVFHAVKALFEKEMEELRKRSERYPFI 302
Query: 292 MKAVASGKHRWKEIKEAVELLEGKRIDDKNFSNVLNNLVRYDYLEKTTKGYFIPDPLVEL 351
++ +A G + W +K + +G I D ++L L + ++EKT GY I DP+ E
Sbjct: 303 LRQIARGINTWSALKN-IFRAKGDFIGDSRLYSLLETLEKMSFIEKTQSGYRIVDPVFER 361
Query: 352 AFR 354
R
Sbjct: 362 ILR 364
>pir||H71100 hypothetical protein PH1067 - Pyrococcus horikoshii
>gi|3257483|dbj|BAA30166.1| (AP000004) 354aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 354
Score = 228 bits (576), Expect = 6e-59
Identities = 138/358 (38%), Positives = 213/358 (58%), Gaps = 19/358 (5%)
Query: 1 MLFNPKPKTRREDLYNREEELSEIERSIKKGVPLVILLGIRRLGKSSLLNVALNEIPIKS 60
MLF+ +PK RRED+++RE+E ++E+SI+ P+ +LLGIRR+GKSSLL L+E P
Sbjct: 1 MLFDLRPKERREDIFDREKEFKKLEKSIED-YPMTLLLGIRRVGKSSLLKAYLSENP--G 57
Query: 61 VKIDARKIYSQFGSVPHTALAEIILKEYTKTTPRERIKDVLKGIRGVSIGGVNLELRTNK 120
+ ID R++Y + G + L K R I L VS+ L++ K
Sbjct: 58 ILIDCRELYGERGHITRIDLIR-------KLQERGNIVQKLLSRFKVSLDLKFLKIEP-K 109
Query: 121 SVSLSEVLERINSLGER---FVIAIDEAQYLRFSNAKYPD----LISWAIDDLGNISFIL 173
VSL ++ E +N +G++ FV+A DEAQYLRF ++ L ++A D+L N+ +L
Sbjct: 110 EVSLMDIFESLNEIGKKMGKFVLAFDEAQYLRFYGSRGGKDLLALFAYAYDNLENLKIVL 169
Query: 174 TGSEVGLLEDFLRIHDPESPLFGRAHVEIRLNRFNRYQSLDFLRKGFEEVGIKVEEEELE 233
TGSEVGLL DFL I+D ESPL+GR E+ + F+ + S +FL+ GF EV + VE+E +E
Sbjct: 170 TGSEVGLLHDFLGINDYESPLYGRVAGEVYVEPFDLHLSKEFLKAGFREVNLNVEDEIIE 229
Query: 234 EVVDELDGIVGWLTLYGYNRYLGLSHRKALKKLKEDAKRLILNEFSKLKELSPRYELAMK 293
+ ++ LDGI GWL L+G + KA+K+ E AK LIL E +L++ S RY ++
Sbjct: 230 KAIEMLDGIPGWLVLFGVEYMREKDYEKAMKRTFEVAKGLILGELRELEKRSRRYLEILR 289
Query: 294 AVASGKHRWKEIKEAVELLEGKRIDDKNFSNVLNNLVRYDYLEKTTKGYFIPDPLVEL 351
+A G +RW I++ + ++G + +LNNL + ++ + Y + DPLV++
Sbjct: 290 GIALGYNRWSLIRDYL-AVKGIPTPEPRLYELLNNLKKMGWINEVEGKYILSDPLVKV 346
>gb|AAK41763.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 356
Score = 201 bits (505), Expect = 1e-50
Identities = 121/363 (33%), Positives = 205/363 (56%), Gaps = 18/363 (4%)
Query: 1 MLFNPKPKTRREDLYNREEELSEIERSIKKGV--PLVILLGIRRLGKSSLLNVALNEIPI 58
MLF+ PK R+D ++RE+E+ ++ KG+ P+ ++LG+RR GKSS++ + +NE+ +
Sbjct: 1 MLFDTSPKDNRKDFFDREKEIEKL-----KGLRAPITLVLGLRRTGKSSIIKIGINELNL 55
Query: 59 KSVKIDARKIYSQFGSVPHTALAEIILKEYTKTTPR-ERIKDVLKGIRGVSIGGVNLELR 117
+ +D RK + + + + + KE K R + LK I+G+ I G ++
Sbjct: 56 PYIYLDLRK-FEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFN 114
Query: 118 TNKS--VSLSEVLERINSLG-ERFVIAIDEAQYL-RFSNAKYPDLISWAIDDLGNISFIL 173
N+ +S + +LE + +I +DEAQ L + +++A D+L I FI+
Sbjct: 115 WNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIM 174
Query: 174 TGSEVGLLEDFLRIHDPESPLFGRAHVEIRLNRFNRYQSLDFLRKGFEEVGIKVEEEELE 233
+GSE+GLL D+LR+ DPESPLFGRA + L F+R ++++FLR+GF+E I ++ E+
Sbjct: 175 SGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDYEV- 233
Query: 234 EVVDELDGIVGWLTLYGYNRYLGLSHRKALKKLKEDAKRLILNEFSKL---KELSPRYEL 290
V +++ GI GWLT +G+ + A+ + E AK+LIL EF +E++ + L
Sbjct: 234 -VYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHGREIARKRYL 292
Query: 291 AMKAVASGKHRWKEIKEAVELLEGKRIDDKNFSNVLNNLVRYDYLEKTTKGYFIPDPLVE 350
+ S +W ++K A+EL EG I D N L L ++ ++ K + Y +PL+
Sbjct: 293 NIMRTLSKCGKWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEGEKYCPSEPLIS 352
Query: 351 LAF 353
LAF
Sbjct: 353 LAF 355
>gb|AAK42134.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 387
Score = 169 bits (423), Expect = 5e-41
Identities = 116/362 (32%), Positives = 191/362 (52%), Gaps = 31/362 (8%)
Query: 1 MLFNPKPKTRREDLYNREEELSEIERSIKKGVPLVILLGIRRLGKSSLLNVALNEIPIKS 60
MLFN +PK R+DLY+RE+E+ I+ SI +G + +LG+RR+GK+S++NVA+ EI
Sbjct: 1 MLFNTRPKEDRKDLYDREKEIEMIKDSIARG-EWIAVLGMRRIGKTSVVNVAVKEIGAIK 59
Query: 61 VKIDARKIY-SQFGSVPHTALAEIILKE-------YTKTTPRERIKDVLKGIRGVSIGGV 112
V I+ +I+ S+ P L ++++E YT ++ + G+ + V
Sbjct: 60 VSINLMRIHDSRKKQYPKHVLISLLIEEINEAIKNYTILGKVAKLLSNILGVEEIQTNKV 119
Query: 113 NLELRTNKSVSLSEVLERINSLG----ERFVIAIDEAQYL-RFSNAKYPDLISWAIDDLG 167
+L + ++ ++ ++S+ ++ VI +DEAQ L + + +P + D+
Sbjct: 120 RAKLTKIRGTDITYIIREMDSIARDNKKQLVIILDEAQELAKVNGLDFPSIFHDVYDNCK 179
Query: 168 NISFILTGSEVGLLEDFLRIHDPESPLFGRAHVEIRLNRFNRYQSLDFLRKGFEEVGIKV 227
N I TGS V L+E L+ + P FGR +I L RF QS +FL KGFEE GIKV
Sbjct: 180 NTVIIFTGSMVKLIEKTLKNIEYTEPFFGRYIRKITLGRFLPEQSREFLEKGFEEEGIKV 239
Query: 228 EEEELEEVVDELDGIVGWLTLYG----YNRYLGLSHR------KALKKLKEDAKRLILNE 277
+E ++E V LDGI GWLTL+G ++ +G R KA+ +++ +A+ I +
Sbjct: 240 DESVIDEAVKRLDGIPGWLTLFGSEYTFSAKMGTKPRIDEIIEKAINEVRNEARNFIFST 299
Query: 278 FSKLKELSPRYELAMKAV--ASGKHRWKEIKEAVELLEGKRIDDKNFSNVLNNLVRYDYL 335
S L RY + A+ GK EI + + + I + +LN LV +D++
Sbjct: 300 QSPL-----RYSAVILALDRLGGKGELHEIVKVSSTILNENIPEPRVYEILNRLVEFDFI 354
Query: 336 EK 337
E+
Sbjct: 355 ER 356
>gb|AAK41567.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 182
Score = 125 bits (310), Expect = 1e-27
Identities = 72/185 (38%), Positives = 109/185 (58%), Gaps = 15/185 (8%)
Query: 178 VGLLEDFLRIHDPESPLFGRAHVEIRLNRFNRYQSLDFLRKGFEEVGIKVEEEELEEVVD 237
+GLL DFL + DP SPL+GR + EI L RF++ +S FLRKGFEE+ +KVEE +++++
Sbjct: 1 MGLLHDFLGVEDPGSPLYGRYYFEITLERFDKEKSRQFLRKGFEELSLKVEENVIQDIIA 60
Query: 238 ELDGIVGWLTLYGYNRYLGLSHRKALKKLKEDAKRLILNEFSKL----KELSP----RYE 289
+DGI GWLTL G N+Y + + LK++K+ A + LNE + L +SP RY
Sbjct: 61 MVDGIPGWLTLAG-NQYF---NNRDLKRVKDLAINVALNEINSLISVKNNVSPIVAKRYR 116
Query: 290 LAMKAVASGKHRWKEIKEAVELLEGKRIDDKNFSNVLNNLVRYDYLEKTTKGYFIPDPLV 349
++ +A G + W +I V+ EG I SN+LN L + ++ + Y DP+
Sbjct: 117 TVLRCIAKGMNSWSKILNCVQNEEGSTISTSVLSNILNTLKKLSIID---ENYRFLDPVY 173
Query: 350 ELAFR 354
+ A R
Sbjct: 174 KEASR 178
>pir||F71154 hypothetical protein PH0437 - Pyrococcus horikoshii
>gi|3256840|dbj|BAA29523.1| (AP000002) 367aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 367
Score = 117 bits (291), Expect = 2e-25
Identities = 112/363 (30%), Positives = 177/363 (47%), Gaps = 23/363 (6%)
Query: 3 FNPKPKTRREDLYNREEEL-SEIERSIKKGVPLVILLGIRRLGKSSLLNVALNEIPIKSV 61
F +P + L+++ ++ ++ R++ +G + ILLG RR+GK+S++NV + +
Sbjct: 7 FTTRPIMEEDCLWDKRRKIVDDLFRTVLRG-NIAILLGPRRVGKTSVVNVISQKFAKRRN 65
Query: 62 KIDARKIYSQFGSVPHTALAEIILKEYTK---TTPRERIKDVLKGIRGVSIGGVNLELRT 118
+S+F ++A+I K + TT + + LKGI V + ++E T
Sbjct: 66 HHYIYFNFSRFIGARAISIADIEPKRTSLKLITTSKSYVIS-LKGI-SVEVRKTSIEEFT 123
Query: 119 NKSVSLSEVLERINSLGERFVIAIDEAQYL-RFSNAKYPDLISWAIDDLGNISFILTGSE 177
+ +L +L + NS ER ++ DEAQ L R N + LI D NIS I TGS
Sbjct: 124 SDFSTLVRILSQ-NS--ERGLLIFDEAQVLARLKNLDFRGLIQEITDSYPNISMIFTGSM 180
Query: 178 VGLLEDFLRIHDPESPLFGRAHVEIRLNRFNRYQSLDFLRKGFEEVGIKVEEE-ELEEVV 236
GLL ++L P+ P F RA L+R+N + L+FL+KGFE GI V E ELE V
Sbjct: 181 PGLLIEYLN-PGPDKPNFMRASETFTLSRWNVEEGLEFLKKGFESYGISVRNELELERAV 239
Query: 237 DELDGIVGWLTLYGYNRY----LGLSHRKALKKLKEDAKRLILNEFSKLKEL------SP 286
EL GI G+++ YG G+ KAL + E++KR L E+ K E SP
Sbjct: 240 KELGGIPGFISYYGITVINLVRSGVPVEKALPRALEESKRYALEEWKKDLEAFLNVYNSP 299
Query: 287 RYELAMKAVASGKHRWKEIKEAVELLEGKRIDDKNFSNVLNNLVRYDYLEKTTKGYFIPD 346
Y MK +AS + E + ++ L+ L + ++ Y+I D
Sbjct: 300 IYVEVMKVLASSYPTALKGAEVYRRMNRAPKRIQHIYKYLDVLEKVGFIRSEGGKYWIED 359
Query: 347 PLV 349
P++
Sbjct: 360 PIL 362
>pir||C75221 hypothetical protein PAB2152 - Pyrococcus abyssi (strain Orsay)
>gi|5457727|emb|CAB49218.1| (AJ248283) hypothetical
protein [Pyrococcus abyssi]
Length = 385
Score = 103 bits (255), Expect = 3e-21
Identities = 84/306 (27%), Positives = 144/306 (46%), Gaps = 18/306 (5%)
Query: 1 MLFNPKPKTRREDLYNREEELSEIERSIKKGVPLVILLGIRRLGKSSLLNVALNEIPIKS 60
+ F+ +P+T E L+ REEE+ ++ R+++ G V +LG R +GK+SL NE ++
Sbjct: 31 LFFDQRPRTLPEQLFGREEEVEKLFRALEAG-SWVAVLGPRMVGKTSLALAGANEFAKEN 89
Query: 61 ----VKIDARKIYSQFGSVPHTALAEIILKEYTKTTPRERIKDVLKGIRGVSI--GGVNL 114
V +D R + E IL ++ + I + L I VS G L
Sbjct: 90 GYNVVLVDLRDTET------FREATEKILGRLPRSI-LDSISEYLSSISEVSAKGAGAGL 142
Query: 115 ELRTNKSVSLSEVLERINSLGERFVIAIDEAQYLRFSNAKYPDLISWAIDDLGNISFILT 174
++ KS L + ++ +DE Q ++ + + ++ ++ I T
Sbjct: 143 TVKLKKSAPARRALSDALFKVQDTILILDEVQGIQQGVPHFLKALGAVFNENHSLQIIFT 202
Query: 175 GSEVGLLED-FLRIHDPESPLFGRAHVEIRLNRFNRYQSLDFLRKGFEEVGIKVEEEELE 233
GS G++ F + ES +GR + I L + + DFLR GFE++G+ EE E+
Sbjct: 203 GSYSGVVRRLFEATYSDES--YGRPPISIMLTPWRESVAEDFLRTGFEKLGVPYEEWEIR 260
Query: 234 EVVDELDGIVGWLTLYGYNRYLGLSHRKALKKLKEDAKRLILNEFSKLKE-LSPRYELAM 292
+ + L + GWL LYG RY+ +H KALK +A + +E + E SP+ +
Sbjct: 261 DTIRNLGTLPGWLNLYGVRRYVERNHEKALKTAIREAVKEAKSELENILEGRSPKARKVV 320
Query: 293 KAVASG 298
+ +A G
Sbjct: 321 RLLAFG 326
>pir||H75092 hypothetical protein PAB1618 - Pyrococcus abyssi (strain Orsay)
>gi|5458557|emb|CAB50045.1| (AJ248286) hypothetical
protein [Pyrococcus abyssi]
Length = 388
Score = 101 bits (249), Expect = 1e-20
Identities = 99/373 (26%), Positives = 175/373 (46%), Gaps = 35/373 (9%)
Query: 3 FNPKPKTRREDLY--NREEELSEIERSIKKGVPLVILLGIRRLGKSSLLNVALNEIPIKS 60
F+ +P T E L+ N + E+ R+ KG + +LLG RR+GK+S++NV + K
Sbjct: 7 FSTRPITDEECLWGENHRRIVDELLRATLKG-NISVLLGPRRVGKTSVVNVVAGKFIRKR 65
Query: 61 VKIDARKIYSQFGSVPHTALAEIILKEYTK---TTPRERIKDVLKGIRGVSIGGVNLELR 117
+S+F ++++I K + TT + + +S G+++E+R
Sbjct: 66 GHHYIYFNFSRFIGARAISISDIEPKRTSMKLITTSKSYV---------LSFKGLSVEIR 116
Query: 118 TNK----SVSLSEVLERINSLGERFVIAIDEAQYL-RFSNAKYPDLISWAIDDLGNISFI 172
+ S++L ++ +R ++ DEAQ L R N + LI D NIS I
Sbjct: 117 KTSIEEFTSDFSKLLRILSQNAKRGLLIFDEAQVLARLKNLDFRGLIQEITDSYPNISII 176
Query: 173 LTGSEVGLLEDFLRIHDPESPLFGRAHVEIRLNRFNRYQSLDFLRKGFEEVGIKVEEE-E 231
TGS G+L +L + P F R+ L R++ + ++FL+ GF I+V +E E
Sbjct: 177 FTGSMPGILIRYLN-SEASKPNFMRSAEVFTLPRWSVQEGVEFLKSGFRAYKIEVNDELE 235
Query: 232 LEEVVDELDGIVGWLTLYGYNRY----LGLSHRKALKKLKEDAKRLILNEFSKLKEL--- 284
LE V EL GI G+++ YG G++ + AL K E+++ L+E+ + E
Sbjct: 236 LERAVKELGGIPGFISYYGLTVVNLVKNGVAVKNALLKALEESRSFALDEWKRDLEAFIN 295
Query: 285 ---SPRYELAMKAVASGKHRWKEIKEAVELLEGKRIDDKNFSNV---LNNLVRYDYLEKT 338
SP Y ++ +A E + L+ + + ++ L+ L + ++
Sbjct: 296 VYSSPIYVEVLRVLAKAYPSALRGAEVYKELDKMNVAPRRMQHIYKYLDTLEKVGFIRSD 355
Query: 339 TKGYFIPDPLVEL 351
K Y+I DPL+ +
Sbjct: 356 GKRYWIEDPLLRI 368
>gb|AAK42841.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 377
Score = 100 bits (246), Expect = 3e-20
Identities = 102/376 (27%), Positives = 168/376 (44%), Gaps = 60/376 (15%)
Query: 15 YNREEELSEIERSIKKGVPLVILLGIRRLGKSSLLNVALNEIPIKSVKIDARKI------ 68
+ RE+E+ + K G P V L+G RR+GK+SLL +L I A +
Sbjct: 13 FGREKEIESLLGLYKLGQP-VGLIGPRRIGKTSLLLASLEHSSFPYSLISAEEFVRGEKG 71
Query: 69 --YSQFGSVPHTALAEIILKEYTKTTPRERIKDVLKGIRGVSIGGVN------------- 113
+++F S T++ I + E+ K LK +R + +G V
Sbjct: 72 FDFAEFLSAYITSVTSTIYSKANYKIILEKGKSYLKQLRDL-LGQVKVTFNIPELYSTIE 130
Query: 114 -----------LELRTNKSVSLSEVLERINSLGERFVIAIDEAQYLRFSNAKYPDLI--- 159
LE ++ L ++L L +R VIAIDE QYLR + P +
Sbjct: 131 LTLDKAEKKKYLEKEFRDALDLPQILSEKFGL-QRVVIAIDEFQYLRLAKQSIPGIFHIM 189
Query: 160 --SWAIDDLGNISFILTGSEVGLLEDFLRIHDPESPLFGRAHVEIRLNRFNRYQSLDFLR 217
W N++++++GS +G++ + L + F + +++N F+R S++FLR
Sbjct: 190 RSKWQFHK--NVTYVISGSLIGMMMELLSSRNQP---FYQFFYLMKVNPFDRKTSIEFLR 244
Query: 218 KGFEEVGIKVEEEELEEVVDELDGIVGWLTLYGYNRYL-GLSHRKALKKLKEDAKRLILN 276
KGFE + V+ EE+E +VD++DG WL L G S + + L +D +
Sbjct: 245 KGFEVNNLDVKSEEIELIVDQVDGFPAWLNLVGIKIVTEKRSANEVINSLVKDINLVTAL 304
Query: 277 EFSKLKELSPRYELAMKAVAS--GKHRWKEIKEAVELLEGKRIDDKNFSNVLNNLVRYDY 334
E + LK LSP +K +AS G K++ +D + L L+ Y
Sbjct: 305 E-NDLKRLSPTARAVLKNLASLGGAGSPKDL----------GLDLLTVTRGLKQLMNYGL 353
Query: 335 LEKTTKG-YFIPDPLV 349
+EK +G Y I DP++
Sbjct: 354 VEKEGRGIYRIVDPIL 369
>gb|AAK41566.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 162
Score = 99.5 bits (244), Expect = 5e-20
Identities = 64/151 (42%), Positives = 91/151 (59%), Gaps = 11/151 (7%)
Query: 1 MLFNPKPKTRREDLYNREEELSEIERSIKKGVPLVILLGIRRLGKSSLLNVALNEIPIKS 60
MLF+ +PK REDL++RE+E+ EI +I + PL+++ G+RR+GK+S+L VALNEI I
Sbjct: 1 MLFDERPKENREDLFDREKEIKEIMSNINR--PLILITGVRRIGKTSVLKVALNEIKIPH 58
Query: 61 VKIDARKIYSQFGSVPHTALAEIILKEYTKTTPRERIKDVLKGIRGVSIGGVNLEL--RT 118
V ID R + + +L T DVL IRGVSI G ++EL +
Sbjct: 59 VIIDCRNLRPNYSRGDLYSLFSNAFSSKLST-----FLDVLSKIRGVSILGNSVELKWKG 113
Query: 119 NKSVSLSEVLERINSLGERFVIAIDEAQYLR 149
+ VSLS++ + +N +R VI IDEAQ LR
Sbjct: 114 REYVSLSDLFDHLNE--KRIVIGIDEAQKLR 142
>gb|AAK42317.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 395
Score = 96.0 bits (235), Expect = 6e-19
Identities = 101/384 (26%), Positives = 175/384 (45%), Gaps = 64/384 (16%)
Query: 12 EDLYNREEELSEIERSIKKGVPLVILLGIRRLGKSSLLNVALNEIPIKSVKIDARKIYS- 70
++ ++RE E+ ++ + + P+ I+ G+RR+GK+S++ +L I V +
Sbjct: 19 DEPFDRENEIKQLVEMMNRRQPVAII-GVRRIGKTSVILKSLKIIETPKVYLSVEDFIEG 77
Query: 71 -QFGSVPHTALAEIILKEYTKT--TPRERI--------KDVLKGIRGVSIGGVNLELRTN 119
F V +L +L T P+ +I K++L +R + IG V L N
Sbjct: 78 KSFDLVSFLSLYSSLLITNTLNYVDPKRKISQIVKQKGKELLDKLREL-IGYVKLSFNIN 136
Query: 120 --------KSV-------SLSEVLERINSLGERF-----VIAIDEAQYLRFSNAKYPDLI 159
SV S+ +VLE L E F V+AIDE QYL+ ++ YP +
Sbjct: 137 LVEVEVFLNSVKRGGVKESIPQVLELPERLAEEFGLNTIVVAIDEFQYLKLASQNYPGIF 196
Query: 160 -----SWAIDDLGNISFILTGSEVGLLEDFLRIHDPESPLFGRAHVEIRLNRFNRYQSLD 214
W + +S++++GS VGLLE +D + P + + I + +F++ S +
Sbjct: 197 HLLRSKWQFHN--KVSYVISGSSVGLLEKIF--YDKKEPFY-QFFFPIYVKQFDKNTSFN 251
Query: 215 FLRKGFEEVGIKVEEEELEEVVDELDGIVGWLTLYGY-NRYLGLSHRKALKKLKED---- 269
FL++GF + G E+ L ++ELDGI WL +G + + KK+ ED
Sbjct: 252 FLKQGFRDEGKDYEDNALLLAIEELDGIPAWLNYFGLKSLQCNEVTSECAKKVIEDITFN 311
Query: 270 ---AKRLILNEFSKLKELSPRYELAMKAVASGKHRWKEIKEAVELLEGKRIDDKNFSNVL 326
+ +I E++KL + + R L A GK L+G + + + L
Sbjct: 312 DPIVRGIIQEEYNKLGK-NARIILKYLAEKGGKGD----------LKGLELSRASINEGL 360
Query: 327 NNLVRYDYLEKTTKG-YFIPDPLV 349
+L+ Y+ K +G Y I DP++
Sbjct: 361 KSLLGSGYIVKEERGKYAIIDPVI 384
>pir||S74051 hypothetical protein c0115 - Sulfolobus solfataricus
>gi|1707745|emb|CAA69465.1| (Y08256) orf c01015
[Sulfolobus solfataricus]
Length = 395
Score = 96.0 bits (235), Expect = 6e-19
Identities = 101/384 (26%), Positives = 175/384 (45%), Gaps = 64/384 (16%)
Query: 12 EDLYNREEELSEIERSIKKGVPLVILLGIRRLGKSSLLNVALNEIPIKSVKIDARKIYS- 70
++ ++RE E+ ++ + + P+ I+ G+RR+GK+S++ +L I V +
Sbjct: 19 DEPFDRENEIKQLVEMMNRRQPVAII-GVRRIGKTSVILKSLKIIETPKVYLSVEDFIEG 77
Query: 71 -QFGSVPHTALAEIILKEYTKT--TPRERI--------KDVLKGIRGVSIGGVNLELRTN 119
F V +L +L T P+ +I K++L +R + IG V L N
Sbjct: 78 KSFDLVSFLSLYSSLLITNTLNYVDPKRKISQIVKQKGKELLDKLREL-IGYVKLSFNIN 136
Query: 120 --------KSV-------SLSEVLERINSLGERF-----VIAIDEAQYLRFSNAKYPDLI 159
SV S+ +VLE L E F V+AIDE QYL+ ++ YP +
Sbjct: 137 LVEVEVFLNSVKRGGVKESIPQVLELPERLAEEFGLNTIVVAIDEFQYLKLASQNYPGIF 196
Query: 160 -----SWAIDDLGNISFILTGSEVGLLEDFLRIHDPESPLFGRAHVEIRLNRFNRYQSLD 214
W + +S++++GS VGLLE +D + P + + I + +F++ S +
Sbjct: 197 HLLRSKWQFHN--KVSYVISGSSVGLLEKIF--YDKKEPFY-QFFFPIYVKQFDKNTSFN 251
Query: 215 FLRKGFEEVGIKVEEEELEEVVDELDGIVGWLTLYGY-NRYLGLSHRKALKKLKED---- 269
FL++GF + G E+ L ++ELDGI WL +G + + KK+ ED
Sbjct: 252 FLKQGFRDEGKDYEDNALLLAIEELDGIPAWLNYFGLKSLQCNEVTSECAKKVIEDITFN 311
Query: 270 ---AKRLILNEFSKLKELSPRYELAMKAVASGKHRWKEIKEAVELLEGKRIDDKNFSNVL 326
+ +I E++KL + + R L A GK L+G + + + L
Sbjct: 312 DPIVRGIIQEEYNKLGK-NARIILKYLAEKGGKGD----------LKGLELSRASINEGL 360
Query: 327 NNLVRYDYLEKTTKG-YFIPDPLV 349
+L+ Y+ K +G Y I DP++
Sbjct: 361 KSLLGSGYIVKEERGKYAIIDPVI 384
>gb|AAK42280.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 360
Score = 80.4 bits (195), Expect = 3e-14
Identities = 86/347 (24%), Positives = 154/347 (43%), Gaps = 50/347 (14%)
Query: 9 TRREDLYNREEELSEIERSIKKGVPLVILLGIRRLGKSSLLNVAL----NEIPIKSVKID 64
T ++ ++RE+ ++ + I + P+ IL RR+GKSSLLN NE + + ++
Sbjct: 11 TEEDEFFDREDYVNVLLSYINRRQPVAILAP-RRMGKSSLLNYIKIKLGNEYIVAKISLE 69
Query: 65 ARKIYSQFGSVPHTALAEIILKEYTKTTPRERIKDV-------LKGIRGVSIGGVNLELR 117
+F + L L + K + I + L I+ +SI NLEL
Sbjct: 70 GITSIEEFADELTSKLVLEALSKSLKMRAKNTISSLVASLNQFLGSIKSLSIRMQNLELY 129
Query: 118 TNK-------SVSLSEVLERI--------NSLGERFVIAIDEAQYLRFSNAKYPDLISWA 162
++ + SE+L+ + G+ VI IDE Q +R +P ++
Sbjct: 130 IDRYSLFKENKLKPSEILDDVLLLPQRIAEDTGKNVVIMIDEFQKIRVLKQPFPKILELT 189
Query: 163 ---IDDLGNISFILTGSEVGLLEDFLRIHDPESPLFGRAHVEIRLNRFNRYQSLDFLRKG 219
+ + N+ I++GSE G++E+ I + + P + +E RL F++ S+ FL +G
Sbjct: 190 RKRLQESKNVEIIVSGSETGIIEEM--ITEAKEPFYNYFKIE-RLKSFDKETSIRFLNEG 246
Query: 220 FEEVGIKVEEEELEEVVDELDGIVGWLTLYGY------NRYLGLSHRKALKKLKEDAKRL 273
+ +E E+V + +GI WL L G N L +LK+D + L
Sbjct: 247 LKGKC----KEYYEKVYELTEGIPAWLNLAGLIFERECNIEAILEDPNVEIELKKDLEGL 302
Query: 274 ILNEFSKLKELSPRYELAMKAVASGKHRWKEIKEAVELLEGKRIDDK 320
NE LK L+ +L+ V++ I +++L+ + + DK
Sbjct: 303 TKNEIKVLKGLAKGNKLSEIKVSN-------IYRVIKILKNRGLVDK 342
>pir||S78016 hypothetical protein c0628 - Sulfolobus solfataricus
>gi|1707707|emb|CAA69473.1| (Y08256) orf c06028
[Sulfolobus solfataricus]
Length = 360
Score = 80.4 bits (195), Expect = 3e-14
Identities = 86/347 (24%), Positives = 154/347 (43%), Gaps = 50/347 (14%)
Query: 9 TRREDLYNREEELSEIERSIKKGVPLVILLGIRRLGKSSLLNVAL----NEIPIKSVKID 64
T ++ ++RE+ ++ + I + P+ IL RR+GKSSLLN NE + + ++
Sbjct: 11 TEEDEFFDREDYVNVLLSYINRRQPVAILAP-RRMGKSSLLNYIKIKLGNEYIVAKISLE 69
Query: 65 ARKIYSQFGSVPHTALAEIILKEYTKTTPRERIKDV-------LKGIRGVSIGGVNLELR 117
+F + L L + K + I + L I+ +SI NLEL
Sbjct: 70 GITSIEEFADELTSKLVLEALSKSLKMRAKNTISSLVASLNQFLGSIKSLSIRMQNLELY 129
Query: 118 TNK-------SVSLSEVLERI--------NSLGERFVIAIDEAQYLRFSNAKYPDLISWA 162
++ + SE+L+ + G+ VI IDE Q +R +P ++
Sbjct: 130 IDRYSLFKENKLKPSEILDDVLLLPQRIAEDTGKNVVIMIDEFQKIRVLKQPFPKILELT 189
Query: 163 ---IDDLGNISFILTGSEVGLLEDFLRIHDPESPLFGRAHVEIRLNRFNRYQSLDFLRKG 219
+ + N+ I++GSE G++E+ I + + P + +E RL F++ S+ FL +G
Sbjct: 190 RKRLQESKNVEIIVSGSETGIIEEM--ITEAKEPFYNYFKIE-RLKSFDKETSIRFLNEG 246
Query: 220 FEEVGIKVEEEELEEVVDELDGIVGWLTLYGY------NRYLGLSHRKALKKLKEDAKRL 273
+ +E E+V + +GI WL L G N L +LK+D + L
Sbjct: 247 LKGKC----KEYYEKVYELTEGIPAWLNLAGLIFERECNIEAILEDPNVEIELKKDLEGL 302
Query: 274 ILNEFSKLKELSPRYELAMKAVASGKHRWKEIKEAVELLEGKRIDDK 320
NE LK L+ +L+ V++ I +++L+ + + DK
Sbjct: 303 TKNEIKVLKGLAKGNKLSEIKVSN-------IYRVIKILKNRGLVDK 342
>gb|AAK41444.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 196
Score = 71.0 bits (171), Expect = 2e-11
Identities = 63/209 (30%), Positives = 106/209 (50%), Gaps = 18/209 (8%)
Query: 1 MLFNPKPKTRREDLYNREEELSE-IERSIKKGVPLVILLGIRRLGKSSLLNVALNEIP-- 57
M+F+ PK E+L RE+E+ I + + K +I+ G R +GK+SL+ V +NEI
Sbjct: 1 MIFDLHPKETIEELVGREKEVEHCISQILSKN--WIIIGGQREIGKTSLMKVVINEIKKR 58
Query: 58 --IKSVKIDARKIYSQFGSVPHTALAEIILKEYTKTTPRERIKDVLKGIRGVSIGGVNLE 115
I + I+ R + S +L I++ E K R K + + ++ G+ +
Sbjct: 59 EQIAGIYINLRGVRSL------NSLLTILVSEINKEKISWRFKVNINFL--ITSAGIEIR 110
Query: 116 LRTNKSVSLSEVLERINSLGERFVIAIDEAQYLRFSNAKYPDLISWAIDDLGNISFILTG 175
+ + V ++ ++E +NS E VIA DE Q L F++ ++ D++ + I +G
Sbjct: 111 GGSKRRV-VNSLIELLNSSDE-IVIAFDEVQELSFASKQFLDILGNVYATNPKVHMIFSG 168
Query: 176 SEVGLLEDFLRIHDPESPLFGRAHVEIRL 204
S VGL++ L +SPL GR EIRL
Sbjct: 169 SYVGLVKALLS-PPSDSPLHGRPPTEIRL 196
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.140 0.389
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 130389212
Number of Sequences: 2977
Number of extensions: 5528267
Number of successful extensions: 18018
Number of sequences better than 1.0e-10: 23
Number of HSP's better than 0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 17928
Number of HSP's gapped (non-prelim): 23
length of query: 354
length of database: 189,106,746
effective HSP length: 58
effective length of query: 296
effective length of database: 154,394,500
effective search space: 45700772000
effective search space used: 45700772000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)