BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1955 (tldD-like) DE:TLDD RELATED PROTEIN
(458 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C75180 tldd related protein PAB1955 - Pyrococcus abyssi (st... 923 0.0
pir||E71033 tldD-related protein PH1557 - Pyrococcus horikoshii ... 862 0.0
pir||G71248 tldD homolog PH0246 - Pyrococcus horikoshii >gi|3256... 307 2e-82
sp|Q58403|Y996_METJA HYPOTHETICAL PROTEIN MJ0996 >gi|2826357|gb|... 290 2e-77
pir||A75213 tldd protein PAB0154 - Pyrococcus abyssi (strain Ors... 290 2e-77
pir||D64424 tldD homolog MJ0996 - Methanococcus jannaschii 288 7e-77
emb|CAB57642.1| (Y18930) hypothetical protein [Sulfolobus solfat... 249 4e-65
gb|AAK40965.1| Zn-dependent protease, tldD protein homolog, puta... 249 4e-65
sp|O26944|Y856_METTH HYPOTHETICAL PROTEIN MTH856 >gi|7429832|pir... 239 6e-62
pir||G75033 hypothetical protein PAB1547 - Pyrococcus abyssi (st... 232 6e-60
pir||D71135 tldD-related protein PH0848 - Pyrococcus horikoshii ... 228 8e-59
pir||D72762 hypothetical protein APE0089 - Aeropyrum pernix (str... 194 2e-48
sp|P73754|Y863_SYNY3 HYPOTHETICAL 50.4 KD PROTEIN SLR0863 >gi|74... 192 9e-48
gi|11498263 conserved hypothetical protein [Archaeoglobus fulgid... 180 4e-44
sp|P46473|TLDD_ECOLI TLDD PROTEIN >gi|7429829|pir||F65116 tldD p... 159 5e-38
gb|AAK41402.1| Conserved hypothetical protein [Sulfolobus solfat... 158 1e-37
sp|P57478|TLDD_BUCAI TLDD PROTEIN HOMOLOG >gi|10039067|dbj|BAB13... 153 3e-36
pir||D72342 tldD protein - Thermotoga maritima (strain MSB8) >gi... 153 5e-36
pir||G82325 tldD protein VC0422 [imported] - Vibrio cholerae (gr... 151 2e-35
sp|P74002|YD22_SYNY3 HYPOTHETICAL 53.1 KD PROTEIN SLR1322 >gi|74... 148 9e-35
emb|CAC11942.1| (AL445065) conserved hypothetical protein [Therm... 145 8e-34
pir||F82718 TldD protein XF1127 [imported] - Xylella fastidiosa ... 143 4e-33
sp|P45297|TLDD_HAEIN TLDD PROTEIN HOMOLOG 141 1e-32
pir||D83086 conserved hypothetical protein PA4474 [imported] - P... 139 8e-32
gb|AAC43985.2| (U33883) TldD [Bradyrhizobium japonicum] 133 4e-30
pir||G70473 tldD homolog - Aquifex aeolicus >gi|2984257|gb|AAC07... 127 2e-28
pir||A82033 TLDD protein homolog NMA0367 [imported] - Neisseria ... 125 1e-27
pir||F81010 tldD protein NMB2066 [imported] - Neisseria meningit... 124 2e-27
pir||E72342 pmbA-related protein - Thermotoga maritima (strain M... 117 2e-25
dbj|BAB05755.1| (AP001514) suppressor of the inhibitory activity... 112 7e-24
pir||S70839 tldD homolog - Bradyrhizobium japonicum (fragment) 107 2e-22
pir||D70703 tldD homolog Rv2315c - Mycobacterium tuberculosis (s... 99 1e-19
gb|AAD53904.1|AF176314_14 (AF176314) PmbA [Zymomonas mobilis] 91 2e-17
pir||F71033 hypothetical protein PH1558 - Pyrococcus horikoshii ... 91 3e-17
pir||D82066 pmbA protein VC2535 [imported] - Vibrio cholerae (gr... 89 1e-16
pir||B75213 pmba protein (tlde protein) PAB0155 - Pyrococcus aby... 87 5e-16
pir||B75180 antibiotic/peptide maturation related protein PAB195... 84 3e-15
pir||B83330 hypothetical protein PA2529 [imported] - Pseudomonas... 83 6e-15
pir||T36780 hypothetical protein SCI28.10 - Streptomyces coelico... 83 8e-15
pir||E71135 hypothetical protein PH0849 - Pyrococcus horikoshii ... 80 4e-14
pir||F75033 hypothetical protein PAB1548 - Pyrococcus abyssi (st... 80 5e-14
pir||S77207 hypothetical protein slr1435 - Synechocystis sp. (st... 80 7e-14
sp|P45077|PMBA_HAEIN PMBA PROTEIN HOMOLOG >gi|1075002|pir||C6418... 79 1e-13
sp|P24231|PMBA_ECOLI PMBA PROTEIN (TLDE PROTEIN) >gi|96308|pir||... 75 2e-12
pir||B83086 PmbA protein PA4472 [imported] - Pseudomonas aerugin... 70 4e-11
pir||B69009 conserved hypothetical protein MTH1070 - Methanobact... 69 1e-10
>pir||C75180 tldd related protein PAB1955 - Pyrococcus abyssi (strain Orsay)
>gi|5458032|emb|CAB49522.1| (AJ248284) TLDD RELATED
PROTEIN [Pyrococcus abyssi]
Length = 458
Score = 923 bits (2360), Expect = 0.0
Identities = 458/458 (100%), Positives = 458/458 (100%)
Query: 1 MMNMESLEKALKWAEENIKAEYIELRYEDLKRTTLTLKDGVFTSFTEKLNRGVAIRVLAN 60
MMNMESLEKALKWAEENIKAEYIELRYEDLKRTTLTLKDGVFTSFTEKLNRGVAIRVLAN
Sbjct: 1 MMNMESLEKALKWAEENIKAEYIELRYEDLKRTTLTLKDGVFTSFTEKLNRGVAIRVLAN 60
Query: 61 GAWGFSSTSDLSKLEEAIKEAYKLAKSASETKKEKIELAEIKPVEDFVKSKMKVKPREVD 120
GAWGFSSTSDLSKLEEAIKEAYKLAKSASETKKEKIELAEIKPVEDFVKSKMKVKPREVD
Sbjct: 61 GAWGFSSTSDLSKLEEAIKEAYKLAKSASETKKEKIELAEIKPVEDFVKSKMKVKPREVD 120
Query: 121 IEEKVKHLTELEKLLKEDETVKSVNIRYEDGGGQKILLTNEGTRIEWDYNYLWQSVYVTG 180
IEEKVKHLTELEKLLKEDETVKSVNIRYEDGGGQKILLTNEGTRIEWDYNYLWQSVYVTG
Sbjct: 121 IEEKVKHLTELEKLLKEDETVKSVNIRYEDGGGQKILLTNEGTRIEWDYNYLWQSVYVTG 180
Query: 181 KKEGKLAMARDSIGAVDYGWELMTEKEPNEKVKDRLLRKLHSQLNGVAPKRGEFPVVAGP 240
KKEGKLAMARDSIGAVDYGWELMTEKEPNEKVKDRLLRKLHSQLNGVAPKRGEFPVVAGP
Sbjct: 181 KKEGKLAMARDSIGAVDYGWELMTEKEPNEKVKDRLLRKLHSQLNGVAPKRGEFPVVAGP 240
Query: 241 IIVGLIAHEALGHLAEADLTMNSPFKDLLGKQIAPEYVTMSERYVEGGFGNDKYDDEGVP 300
IIVGLIAHEALGHLAEADLTMNSPFKDLLGKQIAPEYVTMSERYVEGGFGNDKYDDEGVP
Sbjct: 241 IIVGLIAHEALGHLAEADLTMNSPFKDLLGKQIAPEYVTMSERYVEGGFGNDKYDDEGVP 300
Query: 301 VKDIHIIENGILKEIMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFEPGDWSFEE 360
VKDIHIIENGILKEIMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFEPGDWSFEE
Sbjct: 301 VKDIHIIENGILKEIMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFEPGDWSFEE 360
Query: 361 MIEDIKFGYYLVDFRGGQAQLNSAFQVGIQEGYVIRNGEIAEPIRDTSITGVAIEALKKI 420
MIEDIKFGYYLVDFRGGQAQLNSAFQVGIQEGYVIRNGEIAEPIRDTSITGVAIEALKKI
Sbjct: 361 MIEDIKFGYYLVDFRGGQAQLNSAFQVGIQEGYVIRNGEIAEPIRDTSITGVAIEALKKI 420
Query: 421 SAVGKDFAIETGFCGKGQIAFVSSGGPHMRFDGGIIIG 458
SAVGKDFAIETGFCGKGQIAFVSSGGPHMRFDGGIIIG
Sbjct: 421 SAVGKDFAIETGFCGKGQIAFVSSGGPHMRFDGGIIIG 458
>pir||E71033 tldD-related protein PH1557 - Pyrococcus horikoshii
>gi|3257986|dbj|BAA30669.1| (AP000006) 458aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 458
Score = 862 bits (2202), Expect = 0.0
Identities = 417/458 (91%), Positives = 440/458 (96%)
Query: 1 MMNMESLEKALKWAEENIKAEYIELRYEDLKRTTLTLKDGVFTSFTEKLNRGVAIRVLAN 60
M+ ME+LEKAL+WAEENIKAEYIELRYED+KRT L LKDGVF +FTEKLNRGVAIRVL N
Sbjct: 1 MVPMEALEKALRWAEENIKAEYIELRYEDIKRTALNLKDGVFVNFTEKLNRGVAIRVLVN 60
Query: 61 GAWGFSSTSDLSKLEEAIKEAYKLAKSASETKKEKIELAEIKPVEDFVKSKMKVKPREVD 120
GAWGFSSTS+L K+EEAIKEAYKLAK ASETKKEKI+LAEIKPVEDFVKSKMK+KPREVD
Sbjct: 61 GAWGFSSTSELDKVEEAIKEAYKLAKVASETKKEKIKLAEIKPVEDFVKSKMKIKPREVD 120
Query: 121 IEEKVKHLTELEKLLKEDETVKSVNIRYEDGGGQKILLTNEGTRIEWDYNYLWQSVYVTG 180
IEEK+ HL ELE LLKED+ VKSVNIRYEDGGGQKILLTNEGT+IEWDYNYLWQ VYVTG
Sbjct: 121 IEEKINHLKELENLLKEDKAVKSVNIRYEDGGGQKILLTNEGTKIEWDYNYLWQGVYVTG 180
Query: 181 KKEGKLAMARDSIGAVDYGWELMTEKEPNEKVKDRLLRKLHSQLNGVAPKRGEFPVVAGP 240
K++GKLAMARD+IGAVDYGWELMTEKEPNEKV+DR+LRKLHSQL G+ PKRGEFPVVAGP
Sbjct: 181 KEDGKLAMARDTIGAVDYGWELMTEKEPNEKVRDRILRKLHSQLKGITPKRGEFPVVAGP 240
Query: 241 IIVGLIAHEALGHLAEADLTMNSPFKDLLGKQIAPEYVTMSERYVEGGFGNDKYDDEGVP 300
IIVG+IAHEALGHLAEADLTMNSPFKDLLGKQIAPEYVTMSER+VEGGFGNDKYDDEGVP
Sbjct: 241 IIVGIIAHEALGHLAEADLTMNSPFKDLLGKQIAPEYVTMSERHVEGGFGNDKYDDEGVP 300
Query: 301 VKDIHIIENGILKEIMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFEPGDWSFEE 360
V+DIHIIENGILKEIMLNREYA KFNMEPNGHARAQDYRYPPIIRMRNTVFEPGDWSFEE
Sbjct: 301 VRDIHIIENGILKEIMLNREYATKFNMEPNGHARAQDYRYPPIIRMRNTVFEPGDWSFEE 360
Query: 361 MIEDIKFGYYLVDFRGGQAQLNSAFQVGIQEGYVIRNGEIAEPIRDTSITGVAIEALKKI 420
MIEDIKFGYYLVDFRGGQAQLNSAFQVGIQEGYVIRNGEIAEPIRDTSITGVAIEALKKI
Sbjct: 361 MIEDIKFGYYLVDFRGGQAQLNSAFQVGIQEGYVIRNGEIAEPIRDTSITGVAIEALKKI 420
Query: 421 SAVGKDFAIETGFCGKGQIAFVSSGGPHMRFDGGIIIG 458
+AVGKDF IE GFCGKGQ AFVSSGGPHMRF+GGIIIG
Sbjct: 421 TAVGKDFGIEVGFCGKGQTAFVSSGGPHMRFEGGIIIG 458
>pir||G71248 tldD homolog PH0246 - Pyrococcus horikoshii
>gi|3256635|dbj|BAA29318.1| (AP000001) 504aa long
hypothetical tldd protein [Pyrococcus horikoshii]
Length = 504
Score = 307 bits (777), Expect = 2e-82
Identities = 172/454 (37%), Positives = 271/454 (58%), Gaps = 13/454 (2%)
Query: 1 MMNMESLEKALKWAEENIKAEYIELRYEDLKRTTLTLKDGVFTSFTEKLNRGVAIRVLAN 60
++ ++ + K L+ + + +++++R E ++ T LT+++G + RGV +RVL N
Sbjct: 49 LIMIDEILKVLEKYSSSSEIKFMDIRMESIEYTELTIENGKVENLENNGERGVGVRVLIN 108
Query: 61 GAWGFSSTSDLSKLEEAIKEAYKLAKSASETKKEKIELAEIKPVEDFVKSKMKVKPREVD 120
G WGF+ST+DL+K+EE +K A K+AK + + P+ED V+ K +K +++D
Sbjct: 109 G-WGFASTNDLTKIEEIVKTAIKMAK----VSRISTSVYTRDPIEDNVEVKQGIKLKDID 163
Query: 121 IEEKVKHLTELEKLLKEDETVKSVNIRYEDGGGQKILLTNEGTRIEWDYNYLWQSVYVTG 180
+EEKVK E+ +LK E +K+ Y D +K+ L++EG+ IE ++ S+
Sbjct: 164 LEEKVKLGVEVNNMLKR-ENIKTRKFSYSDIIVKKLYLSSEGSIIESTVPRVYLSISSVA 222
Query: 181 KKEGKLAMARDSIGAVDYGWELMTEKEPNEKVKDRLLRKLHSQLNGVAPKRGEFPVVAGP 240
K GK+ S G GWE++ EK E + + +K S L+ +P GE V+ P
Sbjct: 223 KFSGKMQTYWKSFGGTG-GWEIV-EKIDFEHWANFVSKKAVSLLSARSPPSGEMQVIMDP 280
Query: 241 IIVGLIAHEALGHLAEADLTMN--SPFKDLLGKQIAPEYVTM-SERYVEGGFGNDKYDDE 297
+ G+ HEALGH +EAD S +LGK+IA E +T+ + + G FG+ YDDE
Sbjct: 281 ELAGVFIHEALGHASEADAVKQEESILAGMLGKRIAVEELTVVDDPTLPGKFGSYIYDDE 340
Query: 298 GVPVKDIHIIENGILKEIMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFEPGDWS 357
G+P K + II +G+L + +RE ++ N+EPNGH RAQ Y + P++RM NT EPGDW
Sbjct: 341 GIPGKRVEIIRDGVLVNYLNDRETSSLLNLEPNGHGRAQSYSHVPLVRMSNTYIEPGDWR 400
Query: 358 FEEMIEDIKFGYYLVDFRGGQAQLNSA-FQVGIQEGYVIRNGEIAEPIRDTSITGVAIEA 416
FEE+++++KFG Y++ +GGQ + S F +EGY++ NGEI +RD +++G + A
Sbjct: 401 FEEILDEVKFGVYMIGDKGGQVDVASGNFMFAAKEGYLVENGEIKGHLRDVALSGNILSA 460
Query: 417 LKKISAVGKDFAIE-TGFCGKGQIAFVSSGGPHM 449
L++I A+G D IE GFCGKGQ V GGPH+
Sbjct: 461 LREIKAIGNDLKIEFPGFCGKGQWVPVDDGGPHV 494
>sp|Q58403|Y996_METJA HYPOTHETICAL PROTEIN MJ0996 >gi|2826357|gb|AAB99001.1| (U67542)
conserved hypothetical protein [Methanococcus
jannaschii]
Length = 451
Score = 290 bits (735), Expect = 2e-77
Identities = 174/459 (37%), Positives = 267/459 (57%), Gaps = 23/459 (5%)
Query: 1 MMNMESLEKALKWAEENIKAEYIELRYEDLKRTTLTLKDGVFTSFTEKLNRGVAIRVLAN 60
M+N+E +EK L+ +Y ++R + T+TLKDG + GVA+RVL
Sbjct: 1 MLNLEKIEKLLE------VGDYADIRINFGESNTITLKDGKIEEISSGFGNGVAVRVLYK 54
Query: 61 GAWGFSSTSDLSK--LEEAIKEAYKLAKSASETKKEKIELAEIKPVEDFVKSKMKVKPRE 118
WGF +++ +S+ +E+ I +AYK+AK ++E +++I L + K + D K K+ P +
Sbjct: 55 NGWGFVTSNIVSEEEIEKLINKAYKMAKISNEYSEKEIILKDYKAIIDNYKMIGKINPTD 114
Query: 119 VDIEEKVKHLTELEKLLKEDETVKSVNIRYEDGGGQKILLTNEGTRIEWDYNYLWQSVYV 178
VDIEEK + + + K + DE +KS+++ Y D G++I + +EG+RIE + +
Sbjct: 115 VDIEEKKEIIIDTYKNMT-DEKIKSISVSYSDVFGKRIFMISEGSRIEGEITRCIMYMNC 173
Query: 179 TGKKEGKLAMARDSIGAVDYGWELMTEKEPNE--KVKDRLLRKLHSQLNGVAPKRGEFPV 236
K+ G L + G +G+E + + N + K+R LR L ++ PK G+F V
Sbjct: 174 VAKENGNLQYGAERTGG--FGFEKIKDNYLNLALEAKNRALRLLKAK---PCPK-GKFKV 227
Query: 237 VAGPIIVGLIAHEALGHLAEADLTM--NSPFKDLLGKQIAPEYVTM-SERYVEGGFGNDK 293
+ P + G+ HEA+GH +EADL + +S FKD LG+++ EYVT+ + +EG FG+ K
Sbjct: 228 ILDPELAGVFIHEAVGHASEADLVLQNDSVFKDKLGERVGSEYVTVIDDATIEGAFGSYK 287
Query: 294 YDDEGVPVKDIHIIENGILKEIMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFEP 353
YDDEGV K IIENGILK + +RE A + + E G+ RA+ PI+RM NT +P
Sbjct: 288 YDDEGVEGKKTVIIENGILKTYLHSRETAGRMDAELTGNGRAEGLN-KPIVRMSNTFIKP 346
Query: 354 GDWSFEEMIEDIKFGYYLVDFRGGQAQLNSA-FQVGIQEGYVIRNGEIAEPIRDTSITGV 412
GDWSFEE++ED K G +L RGGQ FQ E Y+I NGE+ + ++D ++G
Sbjct: 347 GDWSFEELLEDTKEGIFLKGSRGGQVDTGKGLFQFSAVEAYLIENGELTQVLKDAGLSGE 406
Query: 413 AIEALKKISAVGKDFAIETGFCGK-GQIAFVSSGGPHMR 450
++ L K+ AV KDF + G+CGK GQ V GG +R
Sbjct: 407 ILDILFKVDAVTKDFELSVGYCGKDGQSVPVGDGGGCVR 445
>pir||A75213 tldd protein PAB0154 - Pyrococcus abyssi (strain Orsay)
>gi|5457661|emb|CAB49152.1| (AJ248283) TLDD PROTEIN
[Pyrococcus abyssi]
Length = 452
Score = 290 bits (735), Expect = 2e-77
Identities = 167/436 (38%), Positives = 253/436 (57%), Gaps = 13/436 (2%)
Query: 19 KAEYIELRYEDLKRTTLTLKDGVFTSFTEKLNRGVAIRVLANGAWGFSSTSDLSKLEEAI 78
+ +++++R+E+ T T+++G G+ +RVL NG WGF+ST+DLSKLE+ I
Sbjct: 15 EVKFMDIRFENTIYTEFTVENGKVEGVESNEEVGIGVRVLING-WGFASTNDLSKLEDTI 73
Query: 79 KEAYKLAKSASETKKEKIELAEIKPVEDFVKSKMKVKPREVDIEEKVKHLTELEKLLKED 138
K A KLAK ++ ++ L PVE K K +VD+EEK K E+EK+++ D
Sbjct: 74 KMAIKLAKVSNA----EVPLYVGNPVEGKAIIKQKKDFLDVDLEEKTKLGLEVEKMIRRD 129
Query: 139 ETVKSVNIRYEDGGGQKILLTNEGTRIEWDYNYLWQSVYVTGKKEGKLAMARDSIGAVDY 198
+ +K+ Y D +KI L +EG+ IE ++ S+ + + S G
Sbjct: 130 K-IKTSRFSYSDFVTRKIYLNSEGSVIETVVPRIYFSLSAVARSADIMQTYWKSFGGT-V 187
Query: 199 GWELMTEKEPNEKVKDRLLRKLHSQLNGVAPKRGEFPVVAGPIIVGLIAHEALGHLAEAD 258
GWEL+ + N + + K S L+ +P GE P++ P + G+ HEALGH EAD
Sbjct: 188 GWELVESVDFNYWA-NFISSKALSLLSARSPPSGEMPIIMDPELAGVFIHEALGHAVEAD 246
Query: 259 LTMN--SPFKDLLGKQIAPEYVTM-SERYVEGGFGNDKYDDEGVPVKDIHIIENGILKEI 315
S ++GK+I E +T+ + + G FG+ YDDEG+P K + II++G+L
Sbjct: 247 SVRQGESILSGMIGKKIGSEELTVIDDPTLPGKFGSYVYDDEGLPGKRVEIIKDGVLLNY 306
Query: 316 MLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFEPGDWSFEEMIEDIKFGYYLVDFR 375
+ +RE + N+ PNGH RAQ Y + P++RM NT PG+W+ EEM E++KFG Y++ +
Sbjct: 307 LNDRETSKALNLVPNGHGRAQSYAHVPLVRMSNTYIAPGEWTLEEMFEEVKFGVYMIGDK 366
Query: 376 GGQAQL-NSAFQVGIQEGYVIRNGEIAEPIRDTSITGVAIEALKKISAVGKDFAIE-TGF 433
GGQ + N +F G +EGY+I+ GEI E +RD I+G ++ LK+I AVG+D IE GF
Sbjct: 367 GGQVDIANGSFMFGAKEGYIIKEGEIKEQVRDVGISGNILDTLKEIKAVGRDLKIEFPGF 426
Query: 434 CGKGQIAFVSSGGPHM 449
CGKGQ V GGPH+
Sbjct: 427 CGKGQWVPVDDGGPHV 442
>pir||D64424 tldD homolog MJ0996 - Methanococcus jannaschii
Length = 451
Score = 288 bits (730), Expect = 7e-77
Identities = 173/459 (37%), Positives = 266/459 (57%), Gaps = 23/459 (5%)
Query: 1 MMNMESLEKALKWAEENIKAEYIELRYEDLKRTTLTLKDGVFTSFTEKLNRGVAIRVLAN 60
M+N+E +EK L+ +Y ++R + T+TLKDG + GVA+RVL
Sbjct: 1 MLNLEKIEKLLE------VGDYADIRINFGESNTITLKDGKIEEISSGFGNGVAVRVLYK 54
Query: 61 GAWGFSSTSDLSK--LEEAIKEAYKLAKSASETKKEKIELAEIKPVEDFVKSKMKVKPRE 118
WGF +++ +S+ +E+ I +AYK+AK ++E +++ L + K + D K K+ P +
Sbjct: 55 NGWGFVTSNIVSEEEIEKLINKAYKMAKISNEYSEKEXILKDYKAIIDNYKMIGKINPTD 114
Query: 119 VDIEEKVKHLTELEKLLKEDETVKSVNIRYEDGGGQKILLTNEGTRIEWDYNYLWQSVYV 178
VDIEEK + + + K + DE +KS+++ Y D G++I + +EG+RIE + +
Sbjct: 115 VDIEEKKEIIIDTYKNMT-DEKIKSISVSYSDVFGKRIFMISEGSRIEGEITRCIMYMNC 173
Query: 179 TGKKEGKLAMARDSIGAVDYGWELMTEKEPNE--KVKDRLLRKLHSQLNGVAPKRGEFPV 236
K+ G L + G +G+E + + N + K+R LR L ++ PK G+F V
Sbjct: 174 VAKENGNLQYGAERTGG--FGFEKIKDNYLNLALEAKNRALRLLKAK---PCPK-GKFKV 227
Query: 237 VAGPIIVGLIAHEALGHLAEADLTM--NSPFKDLLGKQIAPEYVTM-SERYVEGGFGNDK 293
+ P + G+ HEA+GH +EADL + +S FKD LG+++ EYVT+ + +EG FG+ K
Sbjct: 228 ILDPELAGVFIHEAVGHASEADLVLQNDSVFKDKLGERVGSEYVTVIDDATIEGAFGSYK 287
Query: 294 YDDEGVPVKDIHIIENGILKEIMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFEP 353
YDDEGV K IIENGILK + +RE A + + E G+ RA+ PI+RM NT +P
Sbjct: 288 YDDEGVEGKKTVIIENGILKTYLHSRETAGRMDAELTGNGRAEGLN-KPIVRMSNTFIKP 346
Query: 354 GDWSFEEMIEDIKFGYYLVDFRGGQAQLNSA-FQVGIQEGYVIRNGEIAEPIRDTSITGV 412
GDWSFEE++ED K G +L RGGQ FQ E Y+I NGE+ + ++D ++G
Sbjct: 347 GDWSFEELLEDTKEGIFLKGSRGGQVDTGKGLFQFSAVEAYLIENGELTQVLKDAGLSGE 406
Query: 413 AIEALKKISAVGKDFAIETGFCGK-GQIAFVSSGGPHMR 450
++ L K+ AV KDF + G+CGK GQ V GG +R
Sbjct: 407 ILDILFKVDAVTKDFELSVGYCGKDGQSVPVGDGGGCVR 445
>emb|CAB57642.1| (Y18930) hypothetical protein [Sulfolobus solfataricus]
Length = 443
Score = 249 bits (630), Expect = 4e-65
Identities = 159/449 (35%), Positives = 243/449 (53%), Gaps = 25/449 (5%)
Query: 9 KALKWAEENIKAEYIELRYEDLKRTTLTL-KDGVFTSFTEKLNRGVAIRVLANGAWGFSS 67
K +K AEE + A + ++RYE + +T+ +D + S ++ G +IRV+ N WGF +
Sbjct: 3 KYIKKAEE-LGASFADIRYERVIANEVTITEDRKYVS--HGVDEGYSIRVIYNRNWGFKA 59
Query: 68 TSDLSK--LEEAIKEAYKLAKSASETKKEKIELAEIKPVEDFVKSKMKVKPREVDIEEKV 125
T +++ +E+ I Y E++ + + D +K + E EEK+
Sbjct: 60 TDKITENEIEDTINHIYG---------DERVNIVYLPSKHDTIKIGKDINKNE---EEKI 107
Query: 126 KHLTELEKLLKE-DETVKSVNIRYEDGGGQKILLTNEGTRIEWDYNYLWQSVYVTGKKEG 184
L ++ + ++KS +I+Y D K ++E I D + S+ V + EG
Sbjct: 108 NDLHKVASQVNTLHPSIKSYSIKYYDEIFHKEYYSSEDREIIADGSSSSLSILVVAR-EG 166
Query: 185 KLAMARDSIGAVDYGWELMTEKEPNEKVKDRLLRKLHSQLNGVAPKRGEFPVVAGPIIVG 244
+ + I + G+ + + +V L +++ +QL G PK GE+PV+ P +VG
Sbjct: 167 DVTVEVSEILSTQMGY--IFDVFDINQVLANLQKRIINQLKGSTPKAGEYPVILAPEVVG 224
Query: 245 LIAHEALGHLAEADLTMNSPFKDLLGKQIAPEYVTMSERYVEGGFGNDK--YDDEGVPVK 302
+ HEA+GHL+EAD+T+N L K+I E++ +S+ + YDDEGV +
Sbjct: 225 IFTHEAIGHLSEADVTLNGSLYKLRNKRIGDEFLNISDLPAMDHPQSSLVYYDDEGVEGR 284
Query: 303 DIHIIENGILKEIMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFEPGDWSFEEMI 362
++ IIENGILKE M +R Y+A P G+ARAQ YR +IRMRNT +PGD S E+
Sbjct: 285 EVKIIENGILKEFMTDRYYSAYLGQPPTGNARAQSYRNFSLIRMRNTYMKPGDASLNELF 344
Query: 363 EDIKFGYYLVDFRGGQAQLNSAFQVGIQEGYVIRNGEIAEPIRDTSITGVAIEALKKISA 422
E IK GYYLV GG+ N FQ IQEGY + N EI EP+R+ I+G I L I
Sbjct: 345 EGIKEGYYLVSPIGGETSSNGTFQFAIQEGYRVENSEIKEPLRNIGISGNTISTLNAIEM 404
Query: 423 VGKDFAIETGFCGK-GQIAFVSSGGPHMR 450
+ KDF + +GFC K GQ VS+GGPH++
Sbjct: 405 ISKDFGMSSGFCEKNGQTVQVSNGGPHIK 433
>gb|AAK40965.1| Zn-dependent protease, tldD protein homolog, putative (tldD)
[Sulfolobus solfataricus]
Length = 443
Score = 249 bits (630), Expect = 4e-65
Identities = 159/449 (35%), Positives = 243/449 (53%), Gaps = 25/449 (5%)
Query: 9 KALKWAEENIKAEYIELRYEDLKRTTLTL-KDGVFTSFTEKLNRGVAIRVLANGAWGFSS 67
K +K AEE + A + ++RYE + +T+ +D + S ++ G +IRV+ N WGF +
Sbjct: 3 KYIKKAEE-LGASFADIRYERVIANEVTITEDRKYVS--HGVDEGYSIRVIYNRNWGFKA 59
Query: 68 TSDLSK--LEEAIKEAYKLAKSASETKKEKIELAEIKPVEDFVKSKMKVKPREVDIEEKV 125
T +++ +E+ I Y E++ + + D +K + E EEK+
Sbjct: 60 TDKITENEIEDTINHIYG---------DERVNIVYLPSKHDTIKIGKDINKNE---EEKI 107
Query: 126 KHLTELEKLLKE-DETVKSVNIRYEDGGGQKILLTNEGTRIEWDYNYLWQSVYVTGKKEG 184
L ++ + ++KS +I+Y D K ++E I D + S+ V + EG
Sbjct: 108 NDLHKVASQVNTLHPSIKSYSIKYYDEIFHKEYYSSEDREIIADGSSSSLSILVVAR-EG 166
Query: 185 KLAMARDSIGAVDYGWELMTEKEPNEKVKDRLLRKLHSQLNGVAPKRGEFPVVAGPIIVG 244
+ + I + G+ + + +V L +++ +QL G PK GE+PV+ P +VG
Sbjct: 167 DVTVEVSEILSTQMGY--IFDVFDINQVLANLQKRIINQLKGSTPKAGEYPVILAPEVVG 224
Query: 245 LIAHEALGHLAEADLTMNSPFKDLLGKQIAPEYVTMSERYVEGGFGNDK--YDDEGVPVK 302
+ HEA+GHL+EAD+T+N L K+I E++ +S+ + YDDEGV +
Sbjct: 225 IFTHEAIGHLSEADVTLNGSLYKLRNKRIGDEFLNISDLPAMDHPQSSLVYYDDEGVEGR 284
Query: 303 DIHIIENGILKEIMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFEPGDWSFEEMI 362
++ IIENGILKE M +R Y+A P G+ARAQ YR +IRMRNT +PGD S E+
Sbjct: 285 EVKIIENGILKEFMTDRYYSAYLGQPPTGNARAQSYRNFSLIRMRNTYMKPGDASLNELF 344
Query: 363 EDIKFGYYLVDFRGGQAQLNSAFQVGIQEGYVIRNGEIAEPIRDTSITGVAIEALKKISA 422
E IK GYYLV GG+ N FQ IQEGY + N EI EP+R+ I+G I L I
Sbjct: 345 EGIKEGYYLVSPIGGETSSNGTFQFAIQEGYRVENSEIKEPLRNIGISGNTISTLNAIEM 404
Query: 423 VGKDFAIETGFCGK-GQIAFVSSGGPHMR 450
+ KDF + +GFC K GQ VS+GGPH++
Sbjct: 405 ISKDFGMSSGFCEKNGQTVQVSNGGPHIK 433
>sp|O26944|Y856_METTH HYPOTHETICAL PROTEIN MTH856 >gi|7429832|pir||C69214 zinc
metalloproteinase - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621948|gb|AAB85354.1| (AE000862)
zinc metalloproteinase [Methanobacterium
thermoautotrophicum]
Length = 454
Score = 239 bits (603), Expect = 6e-62
Identities = 152/444 (34%), Positives = 228/444 (51%), Gaps = 12/444 (2%)
Query: 19 KAEYIELRYEDLKRTTLTLKDGVFTSFTEKLNRGVAIRVLANGAWGFSSTSDLSKLEEAI 78
+ EY ++R + +++ +KDG G IRVL NG+WGF+ T + S+L E
Sbjct: 18 RVEYADIRAGTSRTSSILMKDGKLQEVKSGRASGFRIRVLRNGSWGFAFTDEPSRLGEMA 77
Query: 79 KEAYKLAKSASETKKEKIELAEIKPVEDFVKSKMKVKPREVDIEEKVKHLTELEKLLKED 138
+A K+ S + +++ P D + P +V EK + +++ D
Sbjct: 78 LKAIKMTGSL----RGDVQVGSGAPSVDKTMVRSSRPPSDVPAAEKRELVSDAHHAASVD 133
Query: 139 ETVKSVNIRYEDGGGQKILLTNEGTRIEWDYNYLWQSVYVTGKKEGKLAMARDSIGAVDY 198
V S + Y D L +EG+ IE + + + S G
Sbjct: 134 GVV-STTVSYVDMESSSAFLNSEGSLIEMAETRVALFLNAVASDGSGIQFGHKSCGGTG- 191
Query: 199 GWELMTEKEPNEKVKDRLLRKLHSQLNGVAPKRGEFPVVAGPIIVGLIAHEALGHLAEAD 258
G+E++ E+E E++ R K L P G F +V P + G+ HEALGH AEAD
Sbjct: 192 GFEIL-EREDIEELGRRTGEKAVRLLKASPPPSGRFDIVTDPELTGVFIHEALGHAAEAD 250
Query: 259 LTM--NSPFKDLLGKQIAPEYVTMSERYVEGGFGNDKYDDEGVPVKDIHIIENGILKEIM 316
L + +S + LG++IA E VT+ + GFG+ YD EGV + ++ENG+L ++
Sbjct: 251 LILQGDSILEGKLGEKIASEGVTIIDDPTIDGFGSYSYDAEGVRAAETVLVENGVLTSLL 310
Query: 317 LNREYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFEPGDWSFEEMIEDIKFGYYLVDFRG 376
+RE A K +EP+G+AR+ PI+RM NT +PGD SF+E+IEDI+ G YL RG
Sbjct: 311 NSRETAFKLGLEPSGNARSA-IGDQPIVRMSNTYLKPGDLSFDELIEDIRNGVYLRGSRG 369
Query: 377 GQAQLNSA-FQVGIQEGYVIRNGEIAEPIRDTSITGVAIEALKKISAVGKDFAIETGFCG 435
GQ FQ E + I++GEIAEP++D S++G +E LK + VG DF + GFCG
Sbjct: 370 GQVDTGKGIFQFNAAESFRIQDGEIAEPVKDVSLSGNVLETLKNVDGVGSDFRLGIGFCG 429
Query: 436 K-GQIAFVSSGGPHMRFDGGIIIG 458
K GQ V GGPH+R ++ G
Sbjct: 430 KSGQSVPVGDGGPHVRIRNAMVGG 453
>pir||G75033 hypothetical protein PAB1547 - Pyrococcus abyssi (strain Orsay)
>gi|5458677|emb|CAB50164.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 473
Score = 232 bits (586), Expect = 6e-60
Identities = 159/462 (34%), Positives = 239/462 (51%), Gaps = 22/462 (4%)
Query: 6 SLEKALKWAEENIKAEYIELRYEDLKRTTLTLKDGVFTSFTEKLNRGVAIRVLANGAWGF 65
++EKAL+ + A Y E R+E+ + T+L++K+GV +RG+ IRVL +G GF
Sbjct: 8 AVEKALE-----LGANYAEARFEEKQGTSLSMKNGVPQGMQLLSDRGIGIRVLVDGGMGF 62
Query: 66 SSTSDLSK--LEEAIKEAYKLAKSASETKKEKIELAEIKPVEDFVKSKMKVKPREVDIEE 123
+ST+ L+K + E ++ A KLAKSAS+ +KE I+ ++ + + KMK R+V EE
Sbjct: 63 ASTNILTKESIVETVQRAVKLAKSASKLRKEPIKFSDEYFHNVYYEVKMKKDFRDVPPEE 122
Query: 124 KVKHLTELEK-LLKEDETVKSVNIRYEDGGGQKILLTNEGTRIEWDYNYLWQSVYVTGKK 182
K++ L ++E+ +L + V + Y D KI + +E +E + + +
Sbjct: 123 KLELLKKIEEEVLSTNVKVPMRYLAYSDHVWHKIFVNSENAVVESVIPRVSVMYNLVVYE 182
Query: 183 EGKLAMARDSIGAVDYGWELMTEKEPNEKVKDRLLRKLHSQLNGVAPKRGEFPVVAGPII 242
EG++ A A G EL+ + EP E+ K + G P G+ +V P +
Sbjct: 183 EGQMEQAPFVSRAFSGGLELIEKDEPWERAKKEVETLKRIITEGKKPPEGKVDLVISPEV 242
Query: 243 VGLIAHEALGHLAEADLTMNSPFK---------DLLGKQIAPEYVTM-SERYVEGGFGND 292
G+ HE++GH E D M D+LG++I E VT+ + + +G
Sbjct: 243 AGIAVHESVGHPYELDRIMGREAAQAGESFVKPDMLGERIGSEVVTVIDDPTIPNSWGFY 302
Query: 293 KYDDEGVPVKDIHIIENGILKEIMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFE 352
YDDEGV + ++I NGI+ E ++NREYAAK + N ARA +Y PI+RM NT
Sbjct: 303 LYDDEGVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMANTYLA 362
Query: 353 PGDWSFEEMIEDIKFGYYLVDFRGGQAQLNSAFQVGI-QEGYVIRNGEIAEPIRDTSITG 411
PGD+SFEE+IEDIK G Y+V F Q I +E Y+I NGEI P++ +
Sbjct: 363 PGDYSFEELIEDIKLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRPILEI 422
Query: 412 VAIEALKKISAVGKDFAIETGFCGK---GQIAFVSSGGPHMR 450
+ AVGK+ G CGK GQ V GG H R
Sbjct: 423 TTRGLWSSVDAVGKEVEFHPGTCGKGEPGQGVPVWMGGAHAR 464
>pir||D71135 tldD-related protein PH0848 - Pyrococcus horikoshii
>gi|3257259|dbj|BAA29942.1| (AP000003) 481aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 481
Score = 228 bits (576), Expect = 8e-59
Identities = 160/466 (34%), Positives = 241/466 (51%), Gaps = 32/466 (6%)
Query: 11 LKWAEEN---IKAEYIELRYEDLKRTTLTLKDGVFTSFTEKLNRGVAIRVLANGAWGFSS 67
L++A EN + A Y E R+E+ + +L +K+G+ ++G+ +RVL NG GF+S
Sbjct: 13 LEFAIENALELGASYAEARFEEKQGISLAMKNGIPEGMEILSDKGIGVRVLVNGGMGFAS 72
Query: 68 TSDLSK--LEEAIKEAYKLAKSASETKKEKIELAEIKPVEDFVKSKMKVKPREVDIEEKV 125
T+ L+K + E +K A KLAK+AS+ +KE I +E + + KMK R+V EEK+
Sbjct: 73 TNVLTKESIAETVKRAVKLAKAASKLRKEPITFSEEDFHNVYYEVKMKKDFRDVSPEEKL 132
Query: 126 KHLTELEKLLKEDETVKSVN-----IRYEDGGGQKILLTNEGTRIEWDYNYLWQSVYVTG 180
EL K ++E+ T +VN I Y D K+ + +E +IE + +
Sbjct: 133 ----ELLKKIEEEVTSTNVNVPMRYIAYSDHVWHKVFMNSENAKIESLIPRVSVMYNLVV 188
Query: 181 KKEGKLAMARDSIGAVDYGWELMTEKEPNEKVKDRL--LRKLHSQLNGVAPKRGEFPVVA 238
+ G++ A A G EL+ + EP E+ K + LRK+ ++ G G+ V+
Sbjct: 189 FENGQMEQAPFIQRAFSGGLELIEKDEPWERAKREVETLRKIITE--GKRSPEGKVDVII 246
Query: 239 GPIIVGLIAHEALGHLAEADLTMNSPFK---------DLLGKQIAPEYVTM-SERYVEGG 288
P + G+ HE++GH E D M ++LG++I E VT+ + +
Sbjct: 247 SPEVAGIAVHESVGHPYELDRIMGREAAQAGESFVKPEMLGERIGSEVVTVIDDPTIPNS 306
Query: 289 FGNDKYDDEGVPVKDIHIIENGILKEIMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRN 348
+G YDDEGV + ++I NGI+ E ++NREYAAK + N ARA +Y PI+RM N
Sbjct: 307 WGFYLYDDEGVKARPRYLIRNGIITEFLMNREYAAKLGLRSNAAARAINYNREPIVRMAN 366
Query: 349 TVFEPGDWSFEEMIEDIKFGYYLVDFRGGQAQLNSAFQVGI-QEGYVIRNGEIAEPIRDT 407
T PGD+SFEE+IED+K G Y+V F Q I +E Y+I NGEI P++
Sbjct: 367 TYLAPGDYSFEELIEDVKLGVYMVSFNEWNIDDRRYQQRYIGREAYLIENGEIKHPVKRP 426
Query: 408 SITGVAIEALKKISAVGKDFAIETGFCGK---GQIAFVSSGGPHMR 450
+ + AVGK+ G CGK GQ V GG H R
Sbjct: 427 ILEITTRGLWSSVDAVGKEVEFYAGTCGKGEPGQGVPVWMGGAHAR 472
>pir||D72762 hypothetical protein APE0089 - Aeropyrum pernix (strain K1)
>gi|5103477|dbj|BAA78998.1| (AP000058) 489aa long
hypothetical protein [Aeropyrum pernix]
Length = 489
Score = 194 bits (487), Expect = 2e-48
Identities = 152/469 (32%), Positives = 237/469 (50%), Gaps = 37/469 (7%)
Query: 7 LEKALKWAEENIKAEYIELRYED-LKRTTLTLKDGVFTSFTEKLNRGVAIRVLANGAWGF 65
LEK ++ A + A Y E R+ L + L + D V E + GVA RV+ +GA GF
Sbjct: 26 LEKLVEKALDK-GASYAEARFHARLGDSVLVVNDRVVGGGFE-IEEGVAFRVIVDGALGF 83
Query: 66 SSTSDLSK--LEEAIKEAYKLAKSASETKKEKIELAEIKPVEDFVKSKMKVKPREVDIEE 123
+STS LS+ L+ + A +A+S+S ++K+ ++E + + K+K R +++E+
Sbjct: 84 ASTSLLSEESLDSVVDHAVSIARSSSRGFRKKVGMSEERLGQAQYSLKVKKDFRNLELED 143
Query: 124 KVKHLTELEKLLKEDET-VKSVNIRYEDGGGQKILLTNEGTRIEWD-------YNYLWQS 175
K + E K L+ +K+ Y D K+++T++G IE YN +
Sbjct: 144 KASIVLEYSKSLESKSVDLKAKTFSYSDVLEAKLIITSDGGNIESIIPRVSIFYNIAAEH 203
Query: 176 VYVTGKKEGKLAMARDSIGAVDYGWELMTEKEPNEKVKDRLLRKLHSQLNGVAPKRGEFP 235
K G LA + G EL+ E +KD + + + +G
Sbjct: 204 GDRRANKWGHLAGSG--------GLELVGELGLESMLKDDVNSLEVNLVKAEPSPKGVMD 255
Query: 236 VVAGPIIVGLIAHEALGHLAEADLTMNSP-------FKDLLGKQIAPEYVTMSER-YVEG 287
V+ P IVGL HE++GH +EAD M ++ L +I VT+++ V G
Sbjct: 256 VIISPEIVGLALHESIGHPSEADRVMGREAAQAGLSYRMWLDGRIGSSKVTVADDPTVPG 315
Query: 288 GFGNDKYDDEGVPVKDIHIIENGILKEIMLNREYAAKFNMEPNGHARAQDYRYPPIIRMR 347
+G YDDE VP ++ +I G L E++ +R A F ++ NG ARA +YR PI+RM
Sbjct: 316 SYGFYLYDDEAVPARERILINKGELAELLHSRTTAYSFGVQSNGAARAMNYRSEPIVRMS 375
Query: 348 NTVFEPGDWSFEEMIEDIKFGYYL---VDFRGGQAQLNSAFQVGIQEGYVIRNGEIAEPI 404
NT +PGD FEE++ED+K G Y+ +++ + +L + + VG+ E Y+I+NG I +P+
Sbjct: 376 NTYLKPGDMRFEELLEDVKEGIYMKSYMEWNIDEFRLVARY-VGL-EAYLIKNGRIVKPV 433
Query: 405 RDTSITGVAIEALKKISAVGKDFAIETGFCGKG---QIAFVSSGGPHMR 450
RDT + KI VGKD G CGKG Q V GGPH+R
Sbjct: 434 RDTVLEIPTESFYSKIDGVGKDLRFYAGICGKGEPPQPLPVWMGGPHVR 482
>sp|P73754|Y863_SYNY3 HYPOTHETICAL 50.4 KD PROTEIN SLR0863 >gi|7429837|pir||S74845 tldD
homolog slr0863 - Synechocystis sp. (strain PCC 6803)
>gi|1652888|dbj|BAA17806.1| (D90909) hypothetical
protein [Synechocystis sp.]
Length = 463
Score = 192 bits (482), Expect = 9e-48
Identities = 131/450 (29%), Positives = 226/450 (50%), Gaps = 19/450 (4%)
Query: 19 KAEYIELRYEDLKRTTLTLKDGVFTSFTEKLNRGVAIRVLANGAWGFSSTSDLSKLEEAI 78
+A++I +R E + T ++L+ + +E + G +RV G WGF+S + +L + +
Sbjct: 20 QADFISIRLEQSEGTQISLRSDQVETLSEGIAMGGQVRVCHQGGWGFASFNRWEQLRQRL 79
Query: 79 KEAYKLAKSASETKKEKIELAEIKPVED-FVKSKMKVKPREVDIEEKVKHLTELEKLLK- 136
+EA A+ + ++ LA I PV+ F+ PR++ + +K LL+
Sbjct: 80 EEAIAAARLIGD---DETLLAPIDPVQQTFINPLTGKDPRQISLADKKALCDHYNDLLRG 136
Query: 137 EDETVKSVNIRYEDGGGQKILLTNEGTRIEWDYNYLWQSVYVTGKKEGKLAMARDSIGAV 196
+ + + ++RY D +L T+EGT +E + L T K + + R++ G+
Sbjct: 137 TSDKITTTHVRYSDSQQTVLLATSEGTLLEQCWWDLEMRFAATAKDGNGVQVGRETTGSR 196
Query: 197 -DYGWELMTEKEPNEKVKDRLLRKLHSQLNGVAPKRGEFPVVAGPIIVGLIAHEALGHLA 255
YG + E ++V ++ L + +PVV PI+ GL HEA GHL+
Sbjct: 197 RGYG-----DLENLDQVVQGAAQRAVKALTLPTVQGKTYPVVIDPILTGLFVHEAFGHLS 251
Query: 256 EADLTMNSP-FKDL--LGKQIAPEYVTMSERYVEGGF-GNDKYDDEGVPVKDIHIIENGI 311
EAD+ +P F ++ LG++ P + + + G G+ +DDEGVP +I++G
Sbjct: 252 EADMLYENPDFLEVMSLGRRFGPPELQIFDGAAPPGHRGSYGFDDEGVPASTTQLIKDGE 311
Query: 312 LKEIMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFEPGDWSFEEMIEDIKFGYYL 371
L + +RE A K +P G+AR +Y YPPI+RM NT G+ +++ I+ G Y
Sbjct: 312 LVGRLHSRETAGKLGEKPTGNARCLNYHYPPIVRMTNTWIGRGETPVANLLDGIEEGIYA 371
Query: 372 VDFRGGQAQLNSAFQVGIQEGYVIRNGEIAEPIRDTSITGVAIEALKKISAVGKDFA-IE 430
++ GG F E ++IR+G++AEP++D +++G + L I A+ DF E
Sbjct: 372 QNWLGGMTN-GEMFTFSAGEAWMIRHGQLAEPVKDVTLSGNVFKTLANIEAIADDFYWDE 430
Query: 431 TGFCGKG--QIAFVSSGGPHMRFDGGIIIG 458
+G CGKG V GGP +R ++ G
Sbjct: 431 SGGCGKGGQNGLAVGCGGPSLRIRDVVVGG 460
>gi|11498263 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|3123065|sp|O29602|Y655_ARCFU HYPOTHETICAL PROTEIN
AF0655 >gi|7429834|pir||G69331 conserved hypothetical
protein AF0655 - Archaeoglobus fulgidus
>gi|2649963|gb|AAB90585.1| (AE001059) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 425
Score = 180 bits (451), Expect = 4e-44
Identities = 134/436 (30%), Positives = 223/436 (50%), Gaps = 35/436 (8%)
Query: 25 LRYEDLKRT-----TLTLKDGVFTSFTEKLNRGVAIRVLANGAWGFSSTSDLSKLEEAIK 79
+R+ D++R L L++G + RVL NG WG + +E ++
Sbjct: 1 MRFWDIRRVENVSLNLQLENGKLEKPRYNKSTSKGFRVLKNGFWGIFEGNVAD--DEGLR 58
Query: 80 EAYKLAKSASETKKEKIELAEIKPVEDFVKSKMKVKPREVDIEEKVKHLTELEKLLKEDE 139
+A K A + + E+I + + ++K P+++ IEEKV+ L +LEK+++ D
Sbjct: 59 QAEKNAFTQGDGDIEEIA------TKGRYRMRVKRDPQDMSIEEKVELLKDLEKIIR-DV 111
Query: 140 TVKSVNIRYEDGGGQKILLTNEGTRIEWDYNYLWQSVYVTGKKEGK----LAMARDSIGA 195
V + + +E+ +++L + E +Y L V + G +G+ L+ + +G
Sbjct: 112 CVSTKLVYFEN---RRVLQYRDSCGSEVEYEVLRTGVSIMGVGKGRSLQFLSKRQMRVG- 167
Query: 196 VDYGWELMTEKEPNEKVKDRLLRKLHSQLNGVAPKRGEFPVVAGPIIVGLIAHEALGHLA 255
G+E++ + +L KL +N +AP GE VV + G+ HEA GH
Sbjct: 168 ---GYEVLDGVDEKAYEIVEVLPKL---VNALAPPSGEMSVVMDSSLAGVFVHEAFGHAV 221
Query: 256 EADLTMNSP--FKDLLGKQIAPEYVTMSERYVEGGFGNDKYDDEGVPVKDIHIIENGILK 313
EAD + K L +++A E VT+ + FG +DDEGV + I+E+G+LK
Sbjct: 222 EADHVLQGATVLKGRLNEKVADESVTIIDDPTLPEFGFFPFDDEGVRAEKKVIVEDGVLK 281
Query: 314 EIMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFEPGDWSFEEMIEDIKFGYYLVD 373
+ +RE A K G+AR+Q P I+RM NT + +SF+E++E+ + G YLV
Sbjct: 282 SFLHSRETAKKLGGVA-GNARSQGVDVP-IVRMSNTYIDTHHYSFDELLEECRDGVYLVG 339
Query: 374 FRGGQAQ-LNSAFQVGIQEGYVIRNGEIAEPIRDTSITGVAIEALKKISAVGKDFAIETG 432
RGG+ F Q GY+I+NGE+AE +RD S++G +E L+ + +G++ + G
Sbjct: 340 SRGGETNPATGYFHFNAQYGYLIKNGELAEMVRDVSLSGNTLEILRNVK-IGREIEFDPG 398
Query: 433 FCGK-GQIAFVSSGGP 447
FCGK GQ+ VS G P
Sbjct: 399 FCGKAGQLVPVSDGSP 414
>sp|P46473|TLDD_ECOLI TLDD PROTEIN >gi|7429829|pir||F65116 tldD protein - Escherichia
coli (strain K-12) >gi|606183|gb|AAA58046.1| (U18997)
ORF_f481 [Escherichia coli] >gi|1732437|dbj|BAA07913.1|
(D44451) TldD protein [Escherichia coli]
>gi|1789640|gb|AAC76276.1| (AE000403) suppresses
inhibitory activity of CsrA [Escherichia coli K12]
Length = 481
Score = 159 bits (399), Expect = 5e-38
Identities = 123/448 (27%), Positives = 210/448 (46%), Gaps = 20/448 (4%)
Query: 19 KAEYIELRYEDLKRTTLTLKDGVFTSFTEKLNRGVAIRVLANGAWGFSSTSDLS--KLEE 76
+ +Y +L ++ + L+D + + +++GV +R ++ GF+ +S LE+
Sbjct: 32 RLDYGDLYFQSSYHESWVLEDRIIKDGSYNIDQGVGVRAISGEKTGFAYADQISLLALEQ 91
Query: 77 AIKEAYKLAKSASETKKEKIELAEIKPVEDFVKSKMKVKPREVDIEEKVKHLTELEKLLK 136
+ + A + + + + K + + E P+ V + EEK+ L ++K+ +
Sbjct: 92 SAQAARTIVRDSGDGKVQTLGAVEHSPLYTSVDPLQSMSR-----EEKLDILRRVDKVAR 146
Query: 137 E-DETVKSVNIRYEDGGGQKILLTNEGTRIEWDYNYLWQSVYVTGKKEGKLAMARDSIGA 195
E D+ V+ V ++ +GT + SV V +++GK G
Sbjct: 147 EADKRVQEVTASLSGVYELILVAATDGTLAADVRPLVRLSVSVLVEEDGKRERGASG-GG 205
Query: 196 VDYGWELMTEKEPNEKVKD----RLLRKLHSQLNGVAPKRGEFPVVAGPIIVGLIAHEAL 251
+G+E E D +R L+ VA G PVV G G++ HEA+
Sbjct: 206 GRFGYEFFLADLDGEVRADAWAKEAVRMALVNLSAVAAPAGTMPVVLGAGWPGVLLHEAV 265
Query: 252 GHLAEADLTMN--SPFKDLLGKQIAPEYVTM-SERYVEGGFGNDKYDDEGVPVKDIHIIE 308
GH E D S F +G+ +A E T+ + + G+ DDEG P + +IE
Sbjct: 266 GHGLEGDFNRRGTSVFSGQVGELVASELCTVVDDGTMVDRRGSVAIDDEGTPGQYNVLIE 325
Query: 309 NGILKEIMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFEPGDWSFEEMIEDIKFG 368
NGILK M ++ A M P G+ R + Y + P+ RM NT PG + +E+IE +++G
Sbjct: 326 NGILKGYMQDKLNARLMGMTPTGNGRRESYAHLPMPRMTNTYMLPGKSTPQEIIESVEYG 385
Query: 369 YYLVDFRGGQAQLNSA-FQVGIQEGYVIRNGEIAEPIRDTSITGVAIEALKKISAVGKDF 427
Y +F GGQ + S F E Y+I NG++ +P++ ++ G IE +++IS VG D
Sbjct: 386 IYAPNFGGGQVDITSGKFVFSTSEAYLIENGKVTKPVKGATLIGSGIETMQQISMVGNDL 445
Query: 428 AIE--TGFCGK-GQIAFVSSGGPHMRFD 452
++ G CGK GQ V G P ++ D
Sbjct: 446 KLDNGVGVCGKEGQSLPVGVGQPTLKVD 473
>gb|AAK41402.1| Conserved hypothetical protein [Sulfolobus solfataricus]
Length = 458
Score = 158 bits (395), Expect = 1e-37
Identities = 123/454 (27%), Positives = 219/454 (48%), Gaps = 35/454 (7%)
Query: 16 ENIKAEYIELRYEDLKRTTLTLKDGVFTSFTEKLNRGVAIRVLANGAWGFSSTSD----L 71
+ + Y+E+R + ++ +G + G ++R +G F+S+++ L
Sbjct: 9 DKFRYPYVEVRRHIVSTFGMSFLNGRLMGSFRFTDDGYSVRYYKDGVLYFASSNNPNDLL 68
Query: 72 SKLEEAIKEAYKLAKSASETKKEKIELAEIKPVEDFVKSKMKVKPREVDIEEKVKHLTEL 131
S +E E ++ +E K+ E+ E KP + + ++EK+ L
Sbjct: 69 SSNKEYKIEGWESGLDNTEPKEGSYEVKEGKPFD------------LMSVDEKISFFKNL 116
Query: 132 EKLLKEDETVKSVNIRYEDGGGQKILLTNEGTRIEWDYNYLWQSVYVTGKKEGKLAMARD 191
+ +K+ +VKSV+ Y++ +K ++ N G+RI L+ + + + + A A
Sbjct: 117 YEAVKDFRSVKSVSFFYDESIEEKEIIVN-GSRIVGRVPRLYVGMNLVLNENNRTATAFY 175
Query: 192 SIGAVDYGWELMTEKEPNEKVKDRLLRKLHSQLNGVAPKRGEFPVVAGPIIVGLIAHEAL 251
+G G E++ NE V D++ G + VV ++ G++AHE++
Sbjct: 176 ELGGSG-GLEVLERMNLNEVVVDKVRSVTEVLAKGKSFGERTTDVVLSNMLTGIMAHESV 234
Query: 252 GHLAEADLTMNSPFK--------DLLGKQIAPEYVTM-SERYVEGGFGNDKYDDEGVPVK 302
GH EAD + F +L +I + VT+ + + G DDEGV +
Sbjct: 235 GHPFEADRVLGREFAQAGLSYLAELKDNRIGSDVVTVIDDPTIPNSGGYYTTDDEGVEAR 294
Query: 303 DIHIIENGILKEIMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFEPGDWSFEEMI 362
++I++G + E + NR ++KFN++ NG ARA ++ P+IRM NT F+PG+ +F+E++
Sbjct: 295 PKYLIKDGKVNEYLQNRFSSSKFNVKSNGSARAANFDREPLIRMSNTFFKPGNMTFDELL 354
Query: 363 EDIKFGYYL---VDFRGGQAQLNSAFQVGIQEGYVIRNGEIAEPIRDTSITGVAIEALKK 419
ED+K G Y+ +++ +L + VG+ E Y I+NG+I +P+ G E LK
Sbjct: 355 EDVKEGVYIKSYMEWNIDDMRLGQRY-VGL-EAYEIKNGKIGDPVLFPVFQGKTTELLKA 412
Query: 420 ISAVGKDFAIETGFCGKG---QIAFVSSGGPHMR 450
+ AV G CGKG Q V GGP+MR
Sbjct: 413 VDAVDNTLVFYPGTCGKGDPDQGIPVWLGGPNMR 446
>sp|P57478|TLDD_BUCAI TLDD PROTEIN HOMOLOG >gi|10039067|dbj|BAB13101.1| (AP001119) tldD
protein [Buchnera sp. APS]
Length = 483
Score = 153 bits (384), Expect = 3e-36
Identities = 123/454 (27%), Positives = 209/454 (45%), Gaps = 22/454 (4%)
Query: 21 EYIELRYEDLKRTTLTLKDGVFTSFTEKLNRGVAIRVLANGAWGFSSTSDLS--KLEEAI 78
+Y +L ++ + L++ + + G+ +R + + GF+ + +S L +
Sbjct: 34 DYGDLYFQSHIHESWILENSIIKEGNYHSDAGIGVRAIRGESTGFAYSDQISLDSLRRST 93
Query: 79 KEAYKLAKSASETKKEKIELAEIKPVEDFVKSKMKVKPRE-VDIEEKVKHLTELEKLLKE 137
K+A+ + + K + + I+P+ V P E +EK L + +
Sbjct: 94 KKAHSIILTKGSGKTKTLSKKTIEPIYK------NVNPLEGFSSKEKTDLLYRANYIARS 147
Query: 138 -DETVKSVNIRYEDGGGQKILLTNEGTRIEWDYNYLWQSVYVTGKKEGKLAMARDSIGA- 195
D V VN Q ++ + +G + + S+ V + GK R G+
Sbjct: 148 LDHRVIEVNASLTGSYEQILVASTDGNLVSDIRPSIQFSISVLVEDHGKRERGRSGGGSR 207
Query: 196 VDYGWELMTEKEPNEKVKDR----LLRKLHSQLNGVAPKRGEFPVVAGPIIVGLIAHEAL 251
DY + L + E D +R L+ G FPVV G G++ HEA+
Sbjct: 208 TDYNFFLNQDDSSKEIRIDHWSKEAVRIALLNLSSKEALSGTFPVVLGSGWPGVLLHEAI 267
Query: 252 GHLAEADLTMN--SPFKDLLGKQIAPEYVTM-SERYVEGGFGNDKYDDEGVPVKDIHIIE 308
GH E D S F +++GK++A E T+ + ++ G+ DDEG P + +IE
Sbjct: 268 GHGLEGDFNRKGTSIFTNMIGKKVASELCTIIDDGTIKNQRGSLSIDDEGTPGQKNILIE 327
Query: 309 NGILKEIMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFEPGDWSFEEMIEDIKFG 368
NGILK+ M ++ A ++ G+ R + Y P+ RM NT G +++I+ + +G
Sbjct: 328 NGILKKYMQDKLNARLMGVKSTGNGRRESYSCLPMPRMTNTYMLSGKSKLDDIIKSVDYG 387
Query: 369 YYLVDFRGGQAQLNSA-FQVGIQEGYVIRNGEIAEPIRDTSITGVAIEALKKISAVGKDF 427
Y V+F GGQ + S F E Y+I+NG+I PI++T++ G +E ++KIS VG D
Sbjct: 388 IYAVNFSGGQVDITSGKFVFSTSEAYLIKNGKIVTPIKNTTLIGSGLEVMQKISMVGDDL 447
Query: 428 AIE--TGFCGK-GQIAFVSSGGPHMRFDGGIIIG 458
++ G CGK GQ V G P M+ + I G
Sbjct: 448 KMDEGMGICGKDGQNIPVGIGQPSMKLENLTIGG 481
>pir||D72342 tldD protein - Thermotoga maritima (strain MSB8)
>gi|4981251|gb|AAD35808.1|AE001743_10 (AE001743) tldD
protein [Thermotoga maritima]
Length = 499
Score = 153 bits (382), Expect = 5e-36
Identities = 121/426 (28%), Positives = 190/426 (44%), Gaps = 21/426 (4%)
Query: 21 EYIELRYEDLKRTTLTLKDGVFTSFTEKLNRGVAIRVLANGAWGFSSTSDLSKLEEAIKE 80
++ EL +E LKDG T GV IR ++ T+DLS+ E I
Sbjct: 57 DFAELFFERKYENRYELKDGKIEQATSGEIVGVGIRGFLGTKAVYAYTNDLSR-ENLINV 115
Query: 81 AYKLAKSASETKKEKIELAEIKPVEDFVKSKMK------VKPREVDIEEKVKHLTELEKL 134
A K+ ++ ETK E + +F ++K K + P +V+ +KV + +
Sbjct: 116 AKKVGEALGETKVEDLTF-------NFNRTKRKERHVVLIPPAQVEKTDKVSVMKKAYYA 168
Query: 135 LKE-DETVKSVNIRYEDGGGQKILLTNEGTRIEWDYNYLWQSVYVTGKKEGKLAMARDSI 193
K E +K V + Y D + ++ +EGT E + +K+G L
Sbjct: 169 AKNYSELIKQVVVWYWDYDQEILVANSEGTWAEDRRVRTRLMINAVAEKDGVLERGFYGP 228
Query: 194 GAVDYGWELMTEKEPNEKVKDRLLRKLHSQLNGVAPKRGEFPVVAGPIIVGLIAHEALGH 253
GA G+E + E K + R + G+ VV G+I HEA+GH
Sbjct: 229 GA-GMGFEFFDRIDVEEAAK-KAARIAARMVEAEPAPAGKMTVVIANGFGGVIFHEAVGH 286
Query: 254 LAEADLTMN--SPFKDLLGKQIAPEYVT-MSERYVEGGFGNDKYDDEGVPVKDIHIIENG 310
EA S F LG+++A E V+ + + + G+G+ DDEG P + +I+ G
Sbjct: 287 GLEATSVAKGASVFAGKLGQKVAAECVSAVDDATIPNGWGSANVDDEGTPTQRTLLIDKG 346
Query: 311 ILKEIMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFEPGDWSFEEMIEDIKFGYY 370
+L ++++ + M+ G R QDY +PP RM NT PGD+ EE+I ++G Y
Sbjct: 347 VLVGYLVDKLGERRMGMKSTGSGRRQDYTFPPTSRMSNTFILPGDYHPEEIIAATEYGLY 406
Query: 371 LVDFRGGQAQ-LNSAFQVGIQEGYVIRNGEIAEPIRDTSITGVAIEALKKISAVGKDFAI 429
GG F + E Y+I G I +P+R ++ G E ++KI VG D A
Sbjct: 407 AKTMGGGSVNPATGEFNFAVSEAYLIEKGRITKPVRGATLIGKGHEIIQKIDMVGNDLAR 466
Query: 430 ETGFCG 435
+ G CG
Sbjct: 467 DQGMCG 472
>pir||G82325 tldD protein VC0422 [imported] - Vibrio cholerae (group O1 strain
N16961) >gi|9654844|gb|AAF93595.1| (AE004129) tldD
protein [Vibrio cholerae]
Length = 481
Score = 151 bits (377), Expect = 2e-35
Identities = 119/444 (26%), Positives = 212/444 (46%), Gaps = 16/444 (3%)
Query: 21 EYIELRYEDLKRTTLTLKDGVFTSFTEKLNRGVAIRVLANGAWGFSSTSDLSKLEEAIKE 80
+Y ++ ++ +L L+D + + ++ GV +R ++ GF+ SD +LE +
Sbjct: 34 DYADIYFQSSWHESLVLEDSIIKDGSFNIDCGVGVRAVSGEKTGFAY-SDQIQLEGLKQS 92
Query: 81 AYKLAKSASETKKEKIELAEIKPVEDFVKSKMKVKPREVDIEEKVKHLTELEKLLKEDET 140
A A + + ++ + F + ++ E ++K + L +L+ ++ E
Sbjct: 93 AIAARGIAQQGQNLTVQAFKRAQHPAFYGAHNPLESWEK--QQKTELLKQLDAYIRTKEP 150
Query: 141 -VKSVNIRYEDGGGQKILLTNEGTRIEWDYNYLWQSVYVTGKKEGKLAMARDSIGAVDYG 199
+ V++ Q ++ +GT + S+ V +K G + G +G
Sbjct: 151 LITEVSVSLSGVHEQILVAATDGTYAGDIRPLVRLSISVLAQK-GDRRERGSAGGGGRFG 209
Query: 200 WELMTEKEPNEKVK----DRLLRKLHSQLNGVAPKRGEFPVVAGPIIVGLIAHEALGHLA 255
++ ++E +K+ D +R+ L VA G PVV G G++ HEA+GH
Sbjct: 210 YDYFLQEEAGQKIAFSFADEAIRQALVNLEAVAAPAGTMPVVLGSGWPGVLLHEAVGHGL 269
Query: 256 EADLTM--NSPFKDLLGKQIAPEYVTM-SERYVEGGFGNDKYDDEGVPVKDIHIIENGIL 312
E D +S F +GK++ + T+ + ++ G+ DDEGV + +IE GIL
Sbjct: 270 EGDFNRKGSSVFAGKVGKKVTSDLCTIVDDGTLKDLRGSLNVDDEGVSGQYNVLIEKGIL 329
Query: 313 KEIMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFEPGDWSFEEMIEDIKFGYYLV 372
K + ++ A + P G+ R + Y + P+ RM NT PG+ + EE+I +K G Y
Sbjct: 330 KGYIQDKLNARLMGVAPTGNGRRESYAHLPMPRMTNTYMLPGEHTPEEIIASVKKGIYAP 389
Query: 373 DFRGGQAQLNSA-FQVGIQEGYVIRNGEIAEPIRDTSITGVAIEALKKISAVGKDFAIE- 430
+F GGQ + S F E Y+I NG+I PI+ ++ G IEA++++S VG D A++
Sbjct: 390 NFGGGQVDITSGKFVFSASEAYLIENGKITRPIKGATLIGSGIEAMQQVSMVGNDLALDR 449
Query: 431 -TGFCGK-GQIAFVSSGGPHMRFD 452
G CGK GQ V G P ++ D
Sbjct: 450 GVGVCGKAGQSVPVGVGQPTLKLD 473
>sp|P74002|YD22_SYNY3 HYPOTHETICAL 53.1 KD PROTEIN SLR1322 >gi|7429840|pir||S75512
hypothetical protein slr1322 - Synechocystis sp. (strain
PCC 6803) >gi|1653157|dbj|BAA18073.1| (D90911)
hypothetical protein [Synechocystis sp.]
Length = 489
Score = 148 bits (371), Expect = 9e-35
Identities = 111/448 (24%), Positives = 196/448 (42%), Gaps = 21/448 (4%)
Query: 20 AEYIELRYEDLKRTTLTLKDGVFTSFTEKLNRGVAIRVLANGAWGFSSTSDLS--KLEEA 77
A+++E E + + +D TS T +L+ G +RV + ST+D+S L A
Sbjct: 43 ADFVEFFLEKVNYVSCLAEDDAITSLTPRLSSGCGVRVYKGKGDCYVSTNDISFNGLRTA 102
Query: 78 IKEAYKLAKSASETKKEKIELAEIKPVEDFVKSKMKVK--PREVDIEEKVKHLTEL-EKL 134
+++ + + + ++ + D+ +K K + R ++E L +KL
Sbjct: 103 LEKGLSILGLTLPAGQSFVPELNLEMLRDYAGAKEKDQWLHRCSPMQEMSDILLGANQKL 162
Query: 135 LKEDETVKSVNIRYEDGGGQKILLTNEGT---RIEWDYNYLWQSVYVTGKKEGKLAMARD 191
+S Y + ++ ++GT I + + G+ +
Sbjct: 163 DHYASHAQSRRAAYFRDWQEVLVAASDGTFARDIRLTQSVGFSLFCADGEHRTSIGKRSG 222
Query: 192 SIGAVDY--GWELMTEKEPNEKVKDRLLRKLHSQLNGVAPKRGEFPVVAGPIIVGLIAHE 249
DY W+ T + + ++L + + G +P++ G+I HE
Sbjct: 223 DTSNPDYLRTWDAETSAQEVAESAGKMLYADYVE-------SGNYPIIMANQFGGVIFHE 275
Query: 250 ALGHLAEADLTMN--SPFKDLLGKQIAPEYVTM-SERYVEGGFGNDKYDDEGVPVKDIHI 306
A GHL E + +PF D G++IA E +T E + FG DDEG+P + +
Sbjct: 276 ACGHLLETTQIEHKTTPFLDKKGEKIAHENLTAWDEGLTDNAFGTIDMDDEGMPTQRTLL 335
Query: 307 IENGILKEIMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFEPGDWSFEEMIEDIK 366
IENGILK + +R + + G R Q Y Y RMRNT PG++S +++ ++
Sbjct: 336 IENGILKNFIADRTGSIRTGHPRTGSGRRQSYAYAAASRMRNTYIAPGNYSVDDIFNSVE 395
Query: 367 FGYYLVDFRGGQAQLNSAFQVGIQEGYVIRNGEIAEPIRDTSITGVAIEALKKISAVGKD 426
G Y GG F + E Y++ NG++ +P++ ++ G A E + KIS +D
Sbjct: 396 KGIYCKQMGGGSVGATGEFNFAVSEAYLVENGKLTKPLKGATLIGTATEIMNKISMSSQD 455
Query: 427 FAIETGFCGK-GQIAFVSSGGPHMRFDG 453
+ GFCG +V+ G PH++ DG
Sbjct: 456 LGLAAGFCGSVSGSVYVTVGQPHIKVDG 483
>emb|CAC11942.1| (AL445065) conserved hypothetical protein [Thermoplasma
acidophilum]
Length = 455
Score = 145 bits (363), Expect = 8e-34
Identities = 125/470 (26%), Positives = 210/470 (44%), Gaps = 49/470 (10%)
Query: 7 LEKALKWAEENIKAEYIELRYEDLKRTTLTLKDGVFTSFTEKLNRGVAIRVLANG-AWGF 65
L++ L +A K+ + + R+ +++ +++G F + G AIRV+ + A +
Sbjct: 2 LDRILDYAGS--KSAFADARFMEIEGRGAVIRNGEFDESLYSNDSGYAIRVVNDSIAMAY 59
Query: 66 SSTSDLSKLEEAIKEAYKLAKSASETK-----KEKIELAEIKPVEDFVKSKMKVKPREVD 120
+ D K+ + +A ++ + + EK +EI D V+
Sbjct: 60 VDSEDWDKVRAVVDDAVLRSRRPGKNRIYRGRSEKASWSEIG--SDHVRDHS-------- 109
Query: 121 IEEKVKHLTELEKLLKE-DETVKSVNIRYE---DGGGQKILLTNEGTRIEWDYNYLWQSV 176
L ++ +LKE D + N+R D ++ +G+ +E Y+ ++ +
Sbjct: 110 -------LGDMIAILKEADSVAEEANVRISALSDRFVHQVYENTDGSHVEGTYSRIFFNY 162
Query: 177 YVTGKKEGKLAMARDSIGAVDYGWELMTEKEPNEKVKDRLLRKLHSQLNGVAPKRGEFPV 236
V + + + + G G++ K +E +K+ + L + + + G F V
Sbjct: 163 LVGVSENDRYEQSSEEFGWTG-GYDAFDFKTISETMKNDV-SNLREIILAPSVEPGNFDV 220
Query: 237 VAGPIIVGLIAHEALGHLAEADLTMNSPF-----KDLLGK----QIAPEYVTM-SERYVE 286
+ GP I G++AHE+ GH E D L GK +I E V++ + ++
Sbjct: 221 IVGPEISGIVAHESAGHPTEYDRIAGREAALAGESFLTGKTFPYRIGSEKVSVIDDPTLK 280
Query: 287 GGFGNDKYDDEGVPVKDIHIIENGILKEIMLNREYAAKFNMEPNGHARAQDYRYPPIIRM 346
G +G YDDEGV + ++ NG E ++NRE AA E NG R+ + P+ RM
Sbjct: 281 GSYGYYLYDDEGVRARKRYLYRNGYTSEFLINRESAAWIGQESNGSGRSSSWDMEPLARM 340
Query: 347 RNTVFEPGDWSFEEMIEDIKFGYYLVDFRG---GQAQLNSAFQVGIQEGYVIRNGEIAEP 403
T EPGD+SFEE+ E + G Y+ F + N + VG +E Y I NG+I
Sbjct: 341 STTYIEPGDYSFEELFEGVHRGIYIKSFTEWNIDDIRFNERY-VG-KEAYYIENGDIKGR 398
Query: 404 IRDTSITGVAIEALKKISAVGKDFAIETGFCGKG---QIAFVSSGGPHMR 450
+R + I+ + AVGKD G CGKG Q V GGPHMR
Sbjct: 399 VRRPILETNTIKFYSAVDAVGKDLHFSAGICGKGDPEQGVEVWMGGPHMR 448
>pir||F82718 TldD protein XF1127 [imported] - Xylella fastidiosa (strain 9a5c)
>gi|9106089|gb|AAF83937.1|AE003949_1 (AE003949) TldD
protein [Xylella fastidiosa]
Length = 485
Score = 143 bits (357), Expect = 4e-33
Identities = 113/447 (25%), Positives = 212/447 (47%), Gaps = 20/447 (4%)
Query: 21 EYIELRYEDLKRTTLTLKDGVFTSFTEKLNRGVAIRVLANGAWGFSSTSDLSKLEEAIKE 80
++ +L ++ +R + +++DG+ T + +GV +R ++ GF+ + D+++ +A+ E
Sbjct: 37 DFGDLYFQHARRESWSIEDGIVKDGTHSIEQGVGVRAISGEKTGFAYSDDINR--DALLE 94
Query: 81 AYKLAKSASETKKEKIELAEIKPVEDFVKSKMKVKPR-----EVDIEEKVKHLTELEKLL 135
A A++ S + + ++ + + ++ + P +D EK+ + +++LL
Sbjct: 95 AAYAARAISRSPGDGVQGTHAVLLHQ--ERELCLYPALDPVGGMDNAEKIAVMRRVDQLL 152
Query: 136 KE-DETVKSVNIRYEDGGGQKILLTNEGTRIEWDYNYLWQSVYVTGKKEGKLAMARDSIG 194
+ D V V + G ++ ++G + +V V + G+ G
Sbjct: 153 RAADPRVTQVMVNLSGGVDVVLIARSDGVLAADVRPLVRLNVQVIVEGHGRRESGYAG-G 211
Query: 195 AVDYGW-ELMTEKEPNEKVKDRLLRKLHSQLNGVAPKRGEFPVVAGPIIVGLIAHEALGH 253
YG+ EL + P ++ L + L + L + G PVV G G++ HEA+GH
Sbjct: 212 GGRYGYAELFADGRPEAFAREALRQALVN-LEAIPAPAGVMPVVLGAGWPGVLLHEAVGH 270
Query: 254 LAEADLTMN--SPFKDLLGKQIAPEYVTM-SERYVEGGFGNDKYDDEGVPVKDIHIIENG 310
E D S + +G+++A VT+ + ++G G+ DDEG P + +IE+G
Sbjct: 271 GLEGDFNRKGTSVYAGRIGERVASPGVTIVDDGTLDGRRGSLNIDDEGTPTQCTTLIEDG 330
Query: 311 ILKEIMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFEPGDWSFEEMIEDIKFGYY 370
+L M + A + G+ R + + + + RM NT G S EEMI +K G Y
Sbjct: 331 VLVGYMQDTLNARLMGVASTGNGRRESFAHLTMPRMTNTYMRAGVHSREEMIRSVKKGLY 390
Query: 371 LVDFRGGQAQLNSA-FQVGIQEGYVIRNGEIAEPIRDTSITGVAIEALKKISAVGKDFAI 429
V+F GGQ + S + E Y+I +G + PI+ ++ G E ++++ +G D A+
Sbjct: 391 AVNFGGGQVDITSGKYVFSATEAYLIEDGRVTAPIKGATLIGNGPETMQRVRMIGDDLAL 450
Query: 430 E--TGFCGK-GQIAFVSSGGPHMRFDG 453
+ G CGK GQ V G P + DG
Sbjct: 451 DAGVGVCGKDGQSVPVGVGQPSLLIDG 477
>sp|P45297|TLDD_HAEIN TLDD PROTEIN HOMOLOG
Length = 482
Score = 141 bits (353), Expect = 1e-32
Identities = 119/456 (26%), Positives = 210/456 (45%), Gaps = 38/456 (8%)
Query: 21 EYIELRYEDLKRTTLTLKDGVFTSFTEKLNRGVAIRVLANGAWGFS-----STSDLSKLE 75
+Y +L ++ + + L+DG+ + ++RGV +R ++ GF+ + + L +
Sbjct: 33 DYADLYFQLSQDESWVLEDGIIKEGSFHIDRGVGVRAVSGEKTGFAYADQINLASLQQCA 92
Query: 76 EAIK------EAYKLAKSASETKKEKIELAEIKPVEDFVKSKMKVKPREVDIEEKVKHLT 129
EA+K + ++ SA A I P+E K E+K++ L
Sbjct: 93 EAVKGIAQVKQGNLISPSAFNVVNPIARYAAINPLESLTK------------EKKIELLH 140
Query: 130 ELEKLLK-EDETVKSVNIRYEDGGGQKILLTNEGTRIEWDYNYLWQSVYVTGKKEGKLAM 188
+++ + ED V V+ + +++ +GT + S+ V ++ GK
Sbjct: 141 LVDRTARAEDHRVTKVSASLSSVYEEVLIMATDGTLAADIRPLVRLSISVLVEENGK--R 198
Query: 189 ARDSIGA-----VDYGWELMTEKEPNEKVKDRLLRKLHSQLNGVAPKRGEFPVVAGPIIV 243
R S G+ +D+ +E++ +R+ L+ VA G PVV G
Sbjct: 199 ERGSCGSGGRFGLDWFFEVVDGDIRAVLFAKEAVRQALVNLSAVAAPAGLMPVVLGAGWP 258
Query: 244 GLIAHEALGHLAEADLTM--NSPFKDLLGKQI-APEYVTMSERYVEGGFGNDKYDDEGVP 300
G++ HEA+GH E D +S F +G+Q+ +P + + +E G+ DDEGVP
Sbjct: 259 GVLLHEAVGHGLEGDFNRKESSLFTGKIGEQVTSPLCTIVDDGTIENRRGSLTIDDEGVP 318
Query: 301 VKDIHIIENGILKEIMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFEPGDWSFEE 360
+ +I++GIL+ M ++ A + G+ R + Y + P+ RM NT G F++
Sbjct: 319 SQCNVLIKDGILQGYMQDKMNARLMGVSTTGNGRRESYAHLPMPRMTNTYMLAGQSQFDD 378
Query: 361 MIEDIKFGYYLVDFRGGQAQLNSA-FQVGIQEGYVIRNGEIAEPIRDTSITGVAIEALKK 419
+I +K G Y F GGQ + S F E Y+I G+I +P++ ++ G IE ++K
Sbjct: 379 LIASVKQGIYAPHFGGGQVDITSGKFVFSTSEAYLIEKGKITKPVKGATLIGSGIEVMQK 438
Query: 420 ISAVG--KDFAIETGFCGK-GQIAFVSSGGPHMRFD 452
IS V + + G CGK GQ V G P ++ D
Sbjct: 439 ISMVADKSELDLGIGVCGKEGQSVPVGVGQPALKID 474
>pir||D83086 conserved hypothetical protein PA4474 [imported] - Pseudomonas
aeruginosa (strain PAO1)
>gi|9950711|gb|AAG07862.1|AE004861_3 (AE004861)
conserved hypothetical protein [Pseudomonas aeruginosa]
Length = 480
Score = 139 bits (346), Expect = 8e-32
Identities = 112/441 (25%), Positives = 205/441 (46%), Gaps = 20/441 (4%)
Query: 24 ELRYEDLKRTTLTLKDGVFTSFTEKLNRGVAIRVLANGAWGFSSTSDLSKLEEAIKEAYK 83
+L ++ + L+DG+ + L++GV +R + GF+ ++ ++ EA+K+A
Sbjct: 39 DLYFQSQVSESWMLEDGIVKEGSFNLDQGVGVRAQSGEKTGFAYSNAITA--EALKQAAV 96
Query: 84 LAKSASETKKEKIELAEIKPVEDFVKSKMKVKPREVDI---EEKVKHLTELEKLLKE-DE 139
A+S S + ++ + V +++ +D+ EKV+ L +++ + D
Sbjct: 97 AARSISRAGQN----GSVQAFKAVVPARLYAGENPLDVLSRAEKVELLKQIDAATRALDP 152
Query: 140 TVKSVNIRYEDGGGQKILLTNEGTRIEWDYNYLWQSVYVTGKKEGKLAMA-RDSIGAVDY 198
++ V + Q ++ ++G+ + +V V ++ G+ G DY
Sbjct: 153 RIQQVTVSMAGVWEQILVAASDGSLAADIRPLVRFNVSVIVEQNGRRERGGHGGGGRTDY 212
Query: 199 GWELMTEKEPNEKVKDRLLRKLHSQLNGVAPKRGEFPVVAGPIIVGLIAHEALGHLAEAD 258
+ L ++ LR+ L + G PVV G G++ HEA+GH E D
Sbjct: 213 RYFLQEDRAMG--YAREALRQALVNLEAIPAPAGTLPVVMGAGWSGVLLHEAVGHGLEGD 270
Query: 259 LTM--NSPFKDLLGKQIAPEYVTM-SERYVEGGFGNDKYDDEGVPVKDIHIIENGILKEI 315
+S + +G+++A T+ + + G G+ DDEG P +IENG+LK
Sbjct: 271 FNRKGSSAYSGRVGEKVASSLCTIVDDGTLAGRRGSLSVDDEGTPSNCNVLIENGVLKGY 330
Query: 316 MLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFEPGDWSFEEMIEDIKFGYYLVDFR 375
M ++ A + G+ R + Y + P+ RM NT G+ +E+I ++ G Y +
Sbjct: 331 MQDKLNARLMGVARTGNGRRESYAHLPMPRMTNTYMLAGESDPQEIIASVEKGIYCANLG 390
Query: 376 GGQAQLNSA-FQVGIQEGYVIRNGEIAEPIRDTSITGVAIEALKKISAVGKDFAIETGF- 433
GGQ + S F E Y+I NG I P++ ++ G EA+ ++S VG D A+++G
Sbjct: 391 GGQVDITSGKFVFSTSEAYLIENGRITTPVKGATLIGNGPEAMSRVSMVGNDLALDSGVG 450
Query: 434 -CGK-GQIAFVSSGGPHMRFD 452
CGK GQ V G P ++ D
Sbjct: 451 TCGKDGQSVPVGVGQPTLKID 471
>gb|AAC43985.2| (U33883) TldD [Bradyrhizobium japonicum]
Length = 479
Score = 133 bits (331), Expect = 4e-30
Identities = 117/435 (26%), Positives = 188/435 (42%), Gaps = 15/435 (3%)
Query: 24 ELRYEDLKRTTLTLKDGVFTSFTEKLNRGVAIRVLANGAWGFSSTSDLSKLEEAIKEAYK 83
EL E + L +G T ++G +R + + A G++ +SD+S + +
Sbjct: 39 ELFLEYSQTEALMFDNGRLKQATYDTSQGFGLRAVKDDAVGYAHSSDVS-----LPALIR 93
Query: 84 LAKSASETKKEKIELAEIKPVEDFVKSKMKVKPREVD-IEEKVKHLTELEKLLKE-DETV 141
A + + + P V+ P + E KVK L E++ L++ D V
Sbjct: 94 AADAVAAVRGGYSGSFSAPPPHTNVRLYGDDNPLDAPGFETKVKLLAEIDAYLRDKDPRV 153
Query: 142 KSVNIRYEDGGGQKILLTNEGTRIEWDYNYLWQSVYVTGKKEGKLAMARDSIGAVDYGWE 201
+ V++ +L +G + ++ V + + G G+
Sbjct: 154 RQVSVTLGATWQVVEILRPDGESYRDIRPLVRVNISVVAGQGDRQESGSKGYGG-RAGYA 212
Query: 202 LMTEKEPNEKVKDRLLRKLHSQLNGVAPKRGEFPVVAGPIIVGLIAHEALGHLAEADLTM 261
E + D LR+ L + GE VV G G++ HEA+GH E D
Sbjct: 213 EFIESKNWRDAADGALREALVNLESIPAPAGEMDVVLGAGWPGVMLHEAVGHGLEGDFNR 272
Query: 262 N--SPFKDLLGKQIAPEYVTM-SERYVEGGFGNDKYDDEGVPVKDIHIIENGILKEIMLN 318
S F L+G+Q+A + VT+ + + G+ DDEG P +IE+GIL M +
Sbjct: 273 KRTSAFAGLMGRQVAAKGVTVVDDGTIASRRGSLSIDDEGTPTNRTVLIEDGILVGYMQD 332
Query: 319 REYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFEPGDWSFEEMIEDIKFGYYLVDFRGGQ 378
R+ A NM+P G+ R Q Y + P+ RM NT GD E++ +K G + +F GGQ
Sbjct: 333 RQNARLMNMKPTGNGRRQGYAHVPMPRMTNTYMLAGDRDPAEILASVKNGVFAANFGGGQ 392
Query: 379 AQLNSA-FQVGIQEGYVIRNGEIAEPIRDTSITGVAIEALKKISAVGKDFAIETGF--CG 435
+ S + E Y I NG+I P++ + G L +I +G D A++TG CG
Sbjct: 393 VDITSGKYVFQCTEAYKIENGKIGAPLKGAMLIGNGPTDLHRIRMIGNDLALDTGIGTCG 452
Query: 436 K-GQIAFVSSGGPHM 449
K GQ V G P +
Sbjct: 453 KNGQGVPVGVGQPSL 467
>pir||G70473 tldD homolog - Aquifex aeolicus >gi|2984257|gb|AAC07784.1|
(AE000768) TldD protein [Aquifex aeolicus]
Length = 404
Score = 127 bits (317), Expect = 2e-28
Identities = 109/399 (27%), Positives = 184/399 (45%), Gaps = 24/399 (6%)
Query: 21 EYIELRYEDLKRTTLTLKDGVFTSFTEKLNRGVAIRVLANGA--WGFSSTSDLSKLEEAI 78
EY E+ YE + T + L+D T + GV +R++ NG +G+++ L+E
Sbjct: 19 EYGEIFYEKSRTTRMHLEDRKIDKVTHGYDEGVGLRLIKNGKTYYGYTTNPTFENLKE-- 76
Query: 79 KEAYKLAKSASETKKEKIELAEIKPVEDFVKSKMKVKPREVDIEEKVKHLTEL-EKLLKE 137
LAK + + + ++ + +++ + P + ++ + + L EK
Sbjct: 77 -----LAKILARGEGHGPVAIGKRYIQGY--TEVLIDPDKESLKFRAEILRRADEKARSF 129
Query: 138 DETVKSVNIRYEDGGGQKILLTNEGTRIEWDYNYLWQSVYVTGKKEGKLAMARDSIGAVD 197
+ +K V D + +++ G E + V V L +S+G
Sbjct: 130 GDKIKQVLAVLMDKTREIMVINTLGETAEDTQKRVVFFVEVVASDGETLQRGYESLGG-R 188
Query: 198 YGWELMTEKEPNEKVKDRLLRKLHSQLNGVAPKRGEFPVVAGPIIVGLIAHEALGHLAEA 257
G+E+ E P E + ++ ++ L+ G F VV G + HEA+GH EA
Sbjct: 189 RGFEIFNETPP-EVIAEKAAKRALLMLSAKPAPAGTFTVVMSSQAGGTMIHEAVGHGLEA 247
Query: 258 DLTMN--SPFKDLLGKQIAPEYVTMSER----YVEGGFGNDKYDDEGVPVKDIHIIENGI 311
DL S + LG+++A E VT+ + Y G F DDEGVP + +I++G+
Sbjct: 248 DLVQQGLSVYAGKLGEKVASELVTVIDDATLPYHNGSF---TVDDEGVPAQRKVLIKDGV 304
Query: 312 LKEIMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFEPGDWSFEEMIEDIKFGYYL 371
L M +R A K +E G+ R Q Y + PI+RM NT + G + E++I+D K G +
Sbjct: 305 LVGYMYDRLRAMKDGVESTGNGRRQSYAHIPIVRMTNTFIDKGQDNPEDIIKDTKKGVLV 364
Query: 372 VDFRGGQAQ-LNSAFQVGIQEGYVIRNGEIAEPIRDTSI 409
V GG+ + F + EGY+I NGEI PIR ++
Sbjct: 365 VKMGGGEVNTVTGDFVFEVMEGYMIENGEITYPIRGATL 403
>pir||A82033 TLDD protein homolog NMA0367 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7379119|emb|CAB83668.1|
(AL162752) TLDD protein homolog [Neisseria meningitidis
Z2491]
Length = 480
Score = 125 bits (310), Expect = 1e-27
Identities = 113/448 (25%), Positives = 192/448 (42%), Gaps = 49/448 (10%)
Query: 37 LKDGVFTSFTEKLNRGVAIRVLANG--AWGFSSTSDLSKLEEAIKEAYKLAKSASETKKE 94
L++G+ S + ++N+GV +R ++ A+ ++ + + + + + + + + +
Sbjct: 52 LEEGIVKSGSFQINQGVGVRAVSGDKTAFAYADSLCIDSINRSARAVRAIGAAGGKVSAK 111
Query: 95 KIELAEIKPVEDFVKSKMKVKPREVDIEEKVKHLTELEKLLKEDETVKSVNIRYEDGGGQ 154
KPV +D KV L ++E + K +
Sbjct: 112 MPSETRGKPV-----CSASDPIAGLDSAAKVALLNKVEAIAKAADP-------------- 152
Query: 155 KILLTNEGTRIEWDYNYLWQSVYVTGK-----------------KEGKLAMARDSIGAVD 197
+I+ G E+D YL + + GK K+G+ + G
Sbjct: 153 RIVQVMAGLTCEYDMVYLAR---LDGKHAADIRPMVRLNVTVIAKQGERREQGSAGGGGR 209
Query: 198 YGWELMTEKEPNEKVKDRLLRKLHSQLNGVAPKRGEFPVVAGPIIVGLIAHEALGHLAEA 257
Y E + V D +++ + L GE VV G G++ HEA+GH E
Sbjct: 210 YDLAYFDENLVRQFV-DAAVKQALTNLESRPAPAGEMTVVLGNGWPGVLLHEAVGHGLEG 268
Query: 258 DLTMN--SPFKDLLGKQIAPEYVTMSERY-VEGGFGNDKYDDEGVPVKDIHIIENGILKE 314
D S F +G+++A + VT+ ++ + G G+ DDEG + +IE+GIL
Sbjct: 269 DFNRKGTSVFSGRIGERVAAKGVTVVDQGDIAGRRGSLNIDDEGNETRRTVLIEDGILVG 328
Query: 315 IMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFEPGDWSFEEMIEDIKFGYYLVDF 374
M + A + G+ R + Y P+ RM NT E G + EE+I I G Y V+F
Sbjct: 329 YMQDETNARLTGTQSTGNGRRESYASAPMPRMTNTFMENGSYEPEEIIASIDKGIYAVNF 388
Query: 375 RGGQAQLNSA-FQVGIQEGYVIRNGEIAEPIRDTSITGVAIEALKKISAVGKDFAIET-- 431
GGQ + S F E + + G + P++ +I G E LK +S +G D A+++
Sbjct: 389 GGGQVDITSGKFVFSASEAWWVEGGRLQYPVKGATIIGNGPEVLKHVSMIGNDTALDSGV 448
Query: 432 GFCGK-GQIAFVSSGGPHMRFDGGIIIG 458
G CGK GQ V G P +R D G+ +G
Sbjct: 449 GVCGKEGQSVPVGVGQPTLRIDAGLTVG 476
>pir||F81010 tldD protein NMB2066 [imported] - Neisseria meningitidis (group B
strain MD58) >gi|7227328|gb|AAF42385.1| (AE002556) tldD
protein [Neisseria meningitidis MC58]
Length = 480
Score = 124 bits (309), Expect = 2e-27
Identities = 82/252 (32%), Positives = 125/252 (49%), Gaps = 7/252 (2%)
Query: 214 DRLLRKLHSQLNGVAPKRGEFPVVAGPIIVGLIAHEALGHLAEADLTMN--SPFKDLLGK 271
D +++ + L GE VV G G++ HEA+GH E D S F +G+
Sbjct: 225 DAAVKQALTNLESRPAPAGEMTVVLGNGWPGVLLHEAVGHGLEGDFNRKGTSVFSGRIGE 284
Query: 272 QIAPEYVTMSERY-VEGGFGNDKYDDEGVPVKDIHIIENGILKEIMLNREYAAKFNMEPN 330
++A + VT+ ++ + G G+ DDEG + +IE+GIL M + A +
Sbjct: 285 RVAAKGVTVVDQGDIAGRRGSLNIDDEGNETRRTVLIEDGILVGYMQDETNARLTGTQST 344
Query: 331 GHARAQDYRYPPIIRMRNTVFEPGDWSFEEMIEDIKFGYYLVDFRGGQAQLNSA-FQVGI 389
G+ R + Y P+ RM NT E G + EE+I I G Y V+F GGQ + S F
Sbjct: 345 GNGRRESYASAPMPRMTNTFMENGSYEPEEIIASIDKGIYAVNFGGGQVDITSGKFVFSA 404
Query: 390 QEGYVIRNGEIAEPIRDTSITGVAIEALKKISAVGKDFAIET--GFCGK-GQIAFVSSGG 446
E + + G + P++ +I G E LK +S +G D A+++ G CGK GQ V G
Sbjct: 405 SEAWWVEGGRLQYPVKGATIIGNGPEVLKHVSMIGNDTALDSGVGVCGKEGQSVPVGVGQ 464
Query: 447 PHMRFDGGIIIG 458
P +R D G+ +G
Sbjct: 465 PTLRIDAGLTVG 476
>pir||E72342 pmbA-related protein - Thermotoga maritima (strain MSB8)
>gi|4981252|gb|AAD35809.1|AE001743_11 (AE001743)
pmbA-related protein [Thermotoga maritima]
Length = 435
Score = 117 bits (291), Expect = 2e-25
Identities = 109/418 (26%), Positives = 191/418 (45%), Gaps = 33/418 (7%)
Query: 23 IELRYEDLKRTTLTLKDGVFTSFTEKLNRGVAIRVLANGAWGFSSTSDLSKLEEAIKEAY 82
+++ + + + +L L +G +T+ V I+VL +G G T L E+ +EA
Sbjct: 21 VQISFLETREFSLRLANGDLDQYTDAGKFNVEIKVLKDGKTGTFRTQVLENPEKCFEEAL 80
Query: 83 K-LAKSASETKKEKIELA-EIKPVEDFVKSKMKVKPREVDIEEKVKHLTELEKLLKEDET 140
L SE K+ E E + +E +V K+ +E K H E K++
Sbjct: 81 SNLQVKDSEEKEYFFEGGKEYREMETYVGRFEKLSVKEKMDMAKKAH----ESAAKDERV 136
Query: 141 VKSVNIRYEDGGGQKILLTNEGTRIE--WDYNYLWQSVYVTGKKEGKLAMARDSIGAVDY 198
V + Y+D +KI+ G +E D +L+ +A+ARD+
Sbjct: 137 VMVPTVMYKDMVIKKIITNTLGLDVESQMDGGFLFA-----------MAIARDANPRSGS 185
Query: 199 GWELMTEKEP--NEKVKDRLLRKLHSQLNGVAPKRGEFPVVAGPIIVGLIAHEALGHLAE 256
+EL E E++ R + S + G++PV+ + + + ++
Sbjct: 186 WYELARTPEDLNPEEIGKRAAEEAISLIGSKTIPSGKYPVLMRNTALLDLMEMFIPMISA 245
Query: 257 ADLTMN-SPFKDLLGKQIAPEYVTMSER-YVEGGFGNDKYDDEGVPVKDIHIIENGILKE 314
++ N SP K LG+Q+ V++ + Y G + +DDEGVP + ++ENG+LK
Sbjct: 246 ENVQKNLSPLKGKLGEQVGNPAVSIKDLPYHPKGLSSTPFDDEGVPTTEKFVLENGVLKT 305
Query: 315 IMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFEPGDWSFEEMIEDIKFGYYLVDF 374
+ N + A K +EP G+ + IR N + PG+ SFEE+++++ G + +
Sbjct: 306 FLHNLKTARKEGVEPTGNG------FVGGIRPVNLMLMPGEKSFEELLKEMDRGVVITEV 359
Query: 375 RGGQAQLNS---AFQVGIQEGYVIRNGEIAEPIRDTSITGVAIEALKKISAVGKDFAI 429
G A NS F + +GY + NGEIA + D +I+G ++ L+KI VG D +
Sbjct: 360 EGMHAGANSISGEFSL-FAKGYWVENGEIAHGVEDITISGNFLDLLRKIVLVGNDVKV 416
>dbj|BAB05755.1| (AP001514) suppressor of the inhibitory activity of the cabon
storage regulator (CsrA) [Bacillus halodurans]
Length = 432
Score = 112 bits (278), Expect = 7e-24
Identities = 76/228 (33%), Positives = 113/228 (49%), Gaps = 13/228 (5%)
Query: 232 GEFPVVAGPIIVGLIAHEALGHLAEADLTM--NSPFKDLLGKQIAPEYVTMSERYVEGGF 289
G + ++ GP+ I HE +GH EAD+ S F LG + E VT+ + + G
Sbjct: 198 GSYALILGPLAAPGIFHEVVGHGLEADIASIPQSAFHQRLGAMVGCEKVTIIDDPTKEGL 257
Query: 290 -GNDKYDDEGVPVKDIHIIENGILKEIMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRN 348
G+ DDEG + +IE G + + + NGH R +Y++ P++RM N
Sbjct: 258 PGSYSLDDEGTIAQQTTLIEKGRVVNYLSHLHTGHP----TNGHGRVINYQHLPLVRMSN 313
Query: 349 TVFEPGDWSFEEMIEDIKFGYYLVDFRGGQAQL-NSAFQVGIQEGYVIRNGEIAEPIRDT 407
T PG EEM+ D + G Y+ G + F++ + EGY+I G+I PI T
Sbjct: 314 TFLLPGTDDPEEMVSDTEVGLYVKKAINGDVNMITGEFEIHVAEGYLIEKGQITSPILPT 373
Query: 408 SITGVAIEALKKISAVGKDFAIET---GFCGK-GQIAF-VSSGGPHMR 450
++ G + L+ I VG DFAI + G CGK GQ VS+G P +R
Sbjct: 374 TLKGDGQKLLQSIDRVGNDFAIHSEVRGGCGKLGQSPLPVSAGSPTVR 421
>pir||S70839 tldD homolog - Bradyrhizobium japonicum (fragment)
Length = 313
Score = 107 bits (265), Expect = 2e-22
Identities = 80/241 (33%), Positives = 114/241 (47%), Gaps = 8/241 (3%)
Query: 217 LRKLHSQLNGVAPKRGEFPVVAGPIIVGLIAHEALGHLAEADLTMN--SPFKDLLGKQIA 274
LR+ L + GE VV G G++ HEA+GH E D S F L+G+Q+A
Sbjct: 61 LREALVNLESIPAPAGEMDVVLGAGWPGVMLHEAVGHGLEGDFNRKRTSAFSGLMGRQVA 120
Query: 275 PEYVTM-SERYVEGGFGNDKYDDEGVPVKDIHIIENGILKEIMLNREYAAKFNMEPNGHA 333
+ VT+ + + G+ DDEG P +IE+GIL M +R+ A NM+P G+A
Sbjct: 121 AKGVTVVDDGTIASRRGSLSIDDEGTPTNRTVLIEDGILVGYMQDRQNARLMNMKPTGNA 180
Query: 334 RAQDYRYPPIIRMRNTVFEPG-DWSFEEMIEDIKFGYYLVDFRGGQAQLNSAFQVG-IQE 391
A+ Y + P+ RM NT G S ++ +K +F GGQ + S V E
Sbjct: 181 AARRYAHVPMPRMTNTYMLRGRSRSGRGVLASVKNAASRANFGGGQVDITSGKYVSQCTE 240
Query: 392 GYVIRNGEIAEPIRDTSITGVAIEALKKISAVGKDFAIETGF--CGK-GQIAFVSSGGPH 448
Y NG+ P + G L +I +G D A++TG CGK GQ V G P
Sbjct: 241 AYKSENGKSGGPAEGRMLIGNGPTDLHRIRMIGNDLALDTGIGTCGKNGQGVPVGVGQPS 300
Query: 449 M 449
+
Sbjct: 301 L 301
>pir||D70703 tldD homolog Rv2315c - Mycobacterium tuberculosis (strain H37RV)
>gi|1524285|emb|CAB02052.1| (Z79702) hypothetical
protein Rv2315c [Mycobacterium tuberculosis]
Length = 505
Score = 98.7 bits (242), Expect = 1e-19
Identities = 115/479 (24%), Positives = 187/479 (39%), Gaps = 32/479 (6%)
Query: 5 ESLEKALKWAEENIKAEYIELRYEDLKRTTLTLKDGVFTSFTEKLNRGVAIRVLANGAWG 64
+ L A A A + +LR + + L+DG + G+A+RV+ G WG
Sbjct: 17 QQLADAALSAAATAGASHADLRVHRISTEIIQLRDGELETAVISRELGLAVRVIVAGTWG 76
Query: 65 FSSTSDLSK--LEEAIKEAYKLAKSASETKKEKIELAEIKPVEDFVK--SKMKVKPREVD 120
F+S ++L+ + A +A + E++ LA +PV + S ++ P V
Sbjct: 77 FASHAELAPDVAAATARHAVHVATVLAALNTERVRLAP-EPVYTDAEWVSNYRIDPFGVP 135
Query: 121 IEEKVKHLTELEKLLKEDETVKSVNIRYEDGGGQKILLTNEGTRIEWDYNYLWQ--SVYV 178
EK+ L + L + + + V+ Q G+ I L
Sbjct: 136 ASEKIAVLRDYSGRLLDADGIDHVSASLNAVKEQTFYADTFGSSITQQRVRLLPCLDAVA 195
Query: 179 TGKKEGKLAMARDSIGAVDYGWELMTEKEPNEKVKD--RLLRKLHSQLNGVAPKRGEFPV 236
G R GWE++ E + +L L ++ + G +
Sbjct: 196 VDSAAGNFESMRTLAPPTARGWEVVAGDEIWNWTDELAQLPSLLAEKVRAPSVMPGPTDL 255
Query: 237 VAGPIIVGLIAHEALGHLAEADLTM---------NSPFKDLLG--KQIAPEYVTMSERYV 285
V P + L HE++GH E D + + D LG + +P ++R
Sbjct: 256 VIDPTNLWLTIHESIGHATEYDRAIGYEAAYAGTSFATPDKLGTLRYGSPVMNVTADRTA 315
Query: 286 EGGFGNDKYDDEGVPVKDIHIIENGILKEIMLNREYAAKFNMEP--NGHARAQDYRYPPI 343
E G YDDEGV + ++ +G+ L+R +A + EP NG + A + PI
Sbjct: 316 EFGLATVGYDDEGVAAQSWDLVRDGVFVGYQLDRAFAPRLG-EPRSNGCSYADSPHHVPI 374
Query: 344 IRMRNTVFEPG--DWSFEEMIEDIKFGYYLVDFRGGQAQLNS-AFQVGIQEGYVIRNGEI 400
RM N +PG D S ++I + G Y+V + + FQ Q + IR G++
Sbjct: 375 QRMANISLQPGIEDLSTADLIGRVDDGIYIVGDKSWSIDMQRYNFQFTGQRFFRIRGGQL 434
Query: 401 AEPIRDTSITGVAIEALKKISAVGKDFAIETG---FCGK---GQIAFVSSGGPHMRFDG 453
+RD + + + AVG G CGK GQ+A VS G P F G
Sbjct: 435 YGQLRDVAYQSSTTDFWNAMEAVGGPSTWRMGGAINCGKAQPGQVAAVSHGCPSALFRG 493
>gb|AAD53904.1|AF176314_14 (AF176314) PmbA [Zymomonas mobilis]
Length = 448
Score = 91.3 bits (223), Expect = 2e-17
Identities = 95/358 (26%), Positives = 163/358 (44%), Gaps = 28/358 (7%)
Query: 67 STSDLSK--LEEAIKEAYKLAKSASETKKEKIELAEIKPVEDFVKSKMKVKPREVDIEEK 124
S+SD SK L+ ++ A +A+ A E + A + P E ++ E D ++
Sbjct: 70 SSSDFSKEALDALVERAVAMAREAPEDR-----WAGLAPKELLMQGT--APEIESDDGKE 122
Query: 125 VKHLTELEKLLKEDETVKSVN-IRYEDGG----GQKI--LLTNEG-TRIEWDYNYLWQSV 176
+ E LK ++ +SV+ I +G G+ I L T+EG TR +Y +
Sbjct: 123 IAPAVLRELALKAEDAARSVDGITNSEGASASAGRTIFALATSEGFTRGSSSSSYGCSAC 182
Query: 177 YVTGKKEGKLAMARD-SIGAVDYGWELMTEKEPNEKVKDRLLRKLHSQLNGVAPKRGEFP 235
+ G+ + M RD A Y +L + E + R + ++LN G+ P
Sbjct: 183 VIAGQG---VNMQRDYDFHATRYFEDL----DAAELIGTRAAERTIARLNPTRIDSGQMP 235
Query: 236 VVAGPII-VGLIAHEALGHLAEADLTMNSPFKDLLGKQIAPEYVTMSER-YVEGGFGNDK 293
++ P + G +++ G A S D LGK + E +T+ E + + G +
Sbjct: 236 IIFDPRVGSGFLSYLIQGISGGAITRKTSFLLDSLGKPVFNEGITIKEDPWRKRGIASRA 295
Query: 294 YDDEGVPVKDIHIIENGILKEIMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFEP 353
+D EG+P K +II+ G L +L+ A + M P GHAR + PP N E
Sbjct: 296 FDGEGLPTKPNNIIDKGRLNGWLLDSAAARQLGMTPTGHAR-RGVGGPPSTGTANLYLEA 354
Query: 354 GDWSFEEMIEDIKFGYYLVDFRGGQAQLNSAFQVGIQEGYVIRNGEIAEPIRDTSITG 411
G + EE++ DIK G Y+ + G + + G++IR+G++AEP+ + ++ G
Sbjct: 355 GKVTPEELMSDIKLGIYVTEMIGSGVNMITGDYSRGASGFIIRDGQLAEPVAEITVAG 412
>pir||F71033 hypothetical protein PH1558 - Pyrococcus horikoshii
>gi|3257987|dbj|BAA30670.1| (AP000006) 445aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 445
Score = 90.9 bits (222), Expect = 3e-17
Identities = 104/432 (24%), Positives = 188/432 (43%), Gaps = 22/432 (5%)
Query: 4 MESLEKALKWAEENIKAEYIELRYEDLKRTTLTLKDGVFTSFTEKLNRGVAIRVLANGAW 63
M +E+ +K+ E + +E+ + L ++ + T +++ +R + +
Sbjct: 1 MRKMEELIKYGERFF--DELEIVTYRAREIGLEVELNEISMGTTRMSTITIVRGIKDNRI 58
Query: 64 GFSSTSDLSK--LEEAIKEAYKLAKSASETKKEKIELAEIKPVEDFVKSKMKVKPREVDI 121
G S + SK +++AI+EA K+A+ + K K L E P + K K+ + +E
Sbjct: 59 GISIVDNDSKEDVKKAIEEAAKMARLNNPDDKWK-SLPE--PGKYREKPKVNEELKEAST 115
Query: 122 EEKVKHLTELEKLLKEDETVKSVNIRYEDGGGQKILLTNE-GTRIEWDYNYLWQSVYVTG 180
E + + +L +E + +V + + N G + +Y + G
Sbjct: 116 ETLASMVIKGIQLARESDPNVTVAGGSAGASWSEFSIANSHGVNVTQEYGHAHVFFEFVG 175
Query: 181 KKEGKLAMARDSIGAVDYGWELMTEKEPNEKVKDRLLRKLHSQLNGVAPKRGEFPVVAGP 240
KKEG + I D L + E + +R + ++ K E PV+ P
Sbjct: 176 KKEG---VVTPGIFEFDIKDNLNLDVE---SIVNRGIERVKWAYKVKEAKNEEAPVIFSP 229
Query: 241 IIVGLIAHEAL--GHLAEADLTMNSPFKDLLGKQIAPEYVTM-SERYVEGGFGNDKYDDE 297
+ + H AL E + +P D +G++IA + +T+ + + E D E
Sbjct: 230 WAISGLFHYALFPAFSGERLIKKTTPLADKVGEKIASDVITIYDDTFHELSVVKAIADGE 289
Query: 298 GVPVKDIHIIENGILKEIMLNREYAAKFNMEPNGHARAQDYRYPPI-IRMRNTVFEPGDW 356
GVP + +IENG+ K + + +A + E GH + +D+R + I + + V E G
Sbjct: 290 GVPTRKTMLIENGVFKGFIWDNYWAKVYGTESTGHGQ-RDWRGGGVTIGLNSAVIENGKR 348
Query: 357 SFEEMIEDIKFGYYLVDFRGGQAQL--NSAFQVGIQEGYVIRNGEIAEPIRDTSITGVAI 414
S EEMI+DIK GY + +G + N F + Y+I +GEIA + +
Sbjct: 349 SLEEMIQDIKHGYLVEGVQGAHSSNPDNGNFAISANPAYLIEDGEIAGSTVFLVASNI-Y 407
Query: 415 EALKKISAVGKD 426
E LK+ S V K+
Sbjct: 408 ELLKQASEVSKE 419
>pir||D82066 pmbA protein VC2535 [imported] - Vibrio cholerae (group O1 strain
N16961) >gi|9657118|gb|AAF95676.1| (AE004322) pmbA
protein [Vibrio cholerae]
Length = 447
Score = 88.9 bits (217), Expect = 1e-16
Identities = 65/213 (30%), Positives = 106/213 (49%), Gaps = 16/213 (7%)
Query: 222 SQLNGVAPKRGEFPVV-AGPIIVGLIAHEALGHLAEADLTMNSPFK-DLLGKQIAPEYVT 279
S+L+ K G+FPV+ A + GLI H + ++ +L S F D LGK I P +
Sbjct: 229 SRLDPQKLKTGQFPVMFAADVATGLIGHLVMA-ISGGNLYRKSSFLLDHLGKTILPTWFN 287
Query: 280 MSER-YVEGGFGNDKYDDEGVPVKDIHIIENGILKEIMLNREYAAKFNMEPNGHARAQDY 338
+SER +V G + +D EGV +D+ II +G+L +L A K NM P GHA
Sbjct: 288 ISERPHVMRGLASSPFDSEGVRTQDLEIITDGVLATYLLTSYAARKMNMTPTGHAGG--- 344
Query: 339 RYPPIIRMRNTVFEPGDWSFEEMIEDIKFGYYLVDFRGGQAQLNSAFQVGIQEGYVIRNG 398
+ N + ++++M++++ G + + G + + G+ + NG
Sbjct: 345 -------IHNWYVKSTGQNYQQMLKELGTGLLVTEVMGQGVNVVTGDYSRGAAGFWVENG 397
Query: 399 EIAEPIRDTSITGVAIEALKKISAVGKDFAIET 431
EI P+ + +I G + L++I AVG D IET
Sbjct: 398 EIKYPVSEITIAGNLKQMLQQIVAVGSD--IET 428
>pir||B75213 pmba protein (tlde protein) PAB0155 - Pyrococcus abyssi (strain
Orsay) >gi|5457662|emb|CAB49153.1| (AJ248283) PMBA
PROTEIN (TLDE PROTEIN) [Pyrococcus abyssi]
Length = 427
Score = 86.6 bits (211), Expect = 5e-16
Identities = 98/396 (24%), Positives = 169/396 (41%), Gaps = 39/396 (9%)
Query: 48 KLNRGVAIRVLANGAWGFSSTSDLS----KLEEAIKEAYKLAKSASETKKEKIELAEIKP 103
+++ G+ +RVL G GFS S + +LE +K AYK+AK A +
Sbjct: 49 EVSGGIGLRVLTQGKIGFSYISGSNFTREQLERLVKRAYKIAKVAGSIYPGFPVPKKFPN 108
Query: 104 VEDFVKSKMKVKPREVDIEEKVKHLTELEKLLKEDETVKSVNIRYEDGGGQKILLTNEGT 163
V K+ R + EE V++ TEL + E S+ + + G ++ + GT
Sbjct: 109 VRGLYDDKI----RNLSTEEIVEYGTELVDVPPNAEA--SIGLSTSERG----IMNSNGT 158
Query: 164 RIEWDYNYLWQSVYVTGKKEGKLAMARDSIGAVDYGWELMTEKEPN-EKVKDRLLRKLHS 222
+ L +YV K +G G+ + + + E E V+++ L +
Sbjct: 159 EGREERTLLAFGLYVFEKSKGT--------GSYSKSFRRLPKLESEIEGVREKALWEFEM 210
Query: 223 QLNGVAPKRGEFPVVAGPIIVGLIAHEALGHLAEADLTMNSPFKDLLGKQIAPEYVTM-S 281
++ ++ P V I L +++ ++ + LG ++A +T+
Sbjct: 211 SSKARKLEKYNGEIILEPKAVASILSIFLPNVSARNVYLKRSRFTELGIEVASGGLTIID 270
Query: 282 ERYVEGGFGNDKYDDEGVPVKDIHIIENGILKEIMLNREYAAKFNMEPNGHARAQDYRYP 341
+ VEGG + +D EG P II+ GIL + +++Y + G+A ++ Y
Sbjct: 271 DPTVEGGINSYSFDGEGNPGVRKFIIKEGILSSFLADQKYGHLIGIGSTGNA-SRGYSSQ 329
Query: 342 PIIRMRNTVFEPGDWSFEEMIEDIKF-GYYLVDFRGGQAQLNSA---FQVGIQEGYVIRN 397
P I N + PG+ +E E I G Y G+ NS F + + GYV+R
Sbjct: 330 PSISPSNIMISPGN---DEQDEGIFIRGIY------GEHTANSVSGDFSLNVDLGYVVRG 380
Query: 398 GEIAEPIRDTSITGVAIEALKKISAVGKDFAIETGF 433
GEI P + + G E LK ++ +GK+ I GF
Sbjct: 381 GEI-RPFKGNMLVGNVFEMLKNVTNIGKEIEILDGF 415
>pir||B75180 antibiotic/peptide maturation related protein PAB1956 - Pyrococcus
abyssi (strain Orsay) >gi|5458031|emb|CAB49521.1|
(AJ248284) ANTIBIOTIC/PEPTIDE MATURATION related protein
[Pyrococcus abyssi]
Length = 448
Score = 83.9 bits (204), Expect = 3e-15
Identities = 93/368 (25%), Positives = 163/368 (44%), Gaps = 22/368 (5%)
Query: 68 TSDLSKLEEAIKEAYKLAKSASETKKEKIELAEIKPVEDFVKSKMKVKPREVDIEEKVKH 127
T ++++AI+EA K+AK + +K + K E K K+ + V E V+
Sbjct: 68 TDSKEEVKKAIEEAAKMAKLNTPDEKWSSLPSPGKYRE---KPKVSEDLKSVSTETLVEF 124
Query: 128 LTELEKLLKEDETVKSVNIRYEDGG---GQKILLTNEGTRIEWDYNYLWQSVYVTGKKEG 184
+T KL +E + +V + G + + ++G + ++ GKKEG
Sbjct: 125 VTRGIKLARESDP--NVTVAGGSAGTSWAEVEIFNSQGINVSQEFGSAHIFFEFVGKKEG 182
Query: 185 KLAMARDSIGAVDYGWELMTEKEPNEKVKDRLLRKLHSQLNGVAPKRGEFPVVAGP-IIV 243
+ G D+ + E + E V +R L ++ N K E V+ GP I
Sbjct: 183 VVTP-----GIFDFDAKDNLELDV-EGVVNRGLERVKWAYNVKEAKNEETTVIFGPWAIS 236
Query: 244 GLIAHEALGHLA-EADLTMNSPFKDLLGKQIAPEYVTM-SERYVEGGFGNDKYDDEGVPV 301
GL+++ + E + +P D +G+++A + +T+ + + E D EGVP
Sbjct: 237 GLLSYALFPAFSGERLVKKTTPLADKVGEKVASDVITIYDDTFHELSIAKAIADGEGVPT 296
Query: 302 KDIHIIENGILKEIMLNREYAAKFNMEPNGHARAQDYRYPPI-IRMRNTVFEPGDWSFEE 360
+ + +IE GI K + + +A + E GH + +D+R + I + + V E G E
Sbjct: 297 RKVTLIEEGIFKGFIWDNYWAKVYGTESTGHGQ-RDWRGGGVSIGLNSAVIENGKRELSE 355
Query: 361 MIEDIKFGYYLVDFRGGQAQL--NSAFQVGIQEGYVIRNGEIAEPIRDTSITGVAIEALK 418
+I +IK GY + +G + N F V Y+I +GE+ I G E LK
Sbjct: 356 IIGEIKHGYLVEGLQGAHSSNPDNGNFAVTANPAYLIEDGEVVGS-TVFLIAGNVYELLK 414
Query: 419 KISAVGKD 426
+ + V KD
Sbjct: 415 QATEVSKD 422
>pir||B83330 hypothetical protein PA2529 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9948585|gb|AAG05917.1|AE004680_5
(AE004680) hypothetical protein [Pseudomonas aeruginosa]
Length = 477
Score = 83.1 bits (202), Expect = 6e-15
Identities = 99/453 (21%), Positives = 187/453 (40%), Gaps = 35/453 (7%)
Query: 12 KWAEENIKAEYIELRYEDLKRTTLTLKDGVFTSFTEKLNRGVAIRVLANGAWGFSSTSDL 71
++A +AE+ LRY L+++ V +RG + V NG +++T+DL
Sbjct: 8 RFAALRSRAEFHSLRYVQRSGEYLSVRRNVSEPPHFSQDRGAMLCVRLNGVEAYAATNDL 67
Query: 72 SK--LEEAIKEAYKLAKSASETKKEKIELAEIKPVEDFVKSKMKVKPREVDIEEKVKHLT 129
S L+ A+++A E + E+I + V + + + R + + L
Sbjct: 68 SAAGLQAALEQA--------ERQAERIARHALFDVRGLPPASGRSQYRSPNQDAPFPSLA 119
Query: 130 ELEKLLKE-------DETVKSVNIRYEDGGGQKILLTNEGTRIEWDYNYLWQSVYVTGKK 182
E +LL E DE + + ++ E +++ L + G + +++ VT
Sbjct: 120 ECYELLAEESAKVPRDERLVNWSVFLEVSRQEQLYLNSAGAEQYHEQRFVYPGASVTAY- 178
Query: 183 EGKLAMARDSIG--AVDYGWELMTEKEPNEKVKDRLLRKLHSQLNGVAPKRGEFPVVAGP 240
+G + R G A G + E+ R+ + L G ++ P
Sbjct: 179 DGHDSQTRSFGGHHAGQQGGAEVIERLGLVGAAPRIADQALQLLAAPNTPSGRCDLLLMP 238
Query: 241 IIVGLIAHEALGHLAEADLTMNSP----------FKDLLGKQIAPEYVTMS-ERYVEGGF 289
+ L HE++GH E D + +D Q + +S + +
Sbjct: 239 DQMILQIHESIGHPLELDRILGDERNYAGTSFIKTEDFGRYQYGSSLLNVSFDPEIPEEL 298
Query: 290 GNDKYDDEGVPVKDIHIIENGILKEIMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNT 349
+ + DD+G P + ++I G L + + +E ++RA + PI RM N
Sbjct: 299 ASYRQDDDGSPARKEYLIREGRLLRPLGGALSQHRSGLEGVANSRASSWNRAPIDRMANL 358
Query: 350 VFEPGDWSFEEMIEDIKFGYYLVDFRGGQAQ-LNSAFQVGIQEGYVIRNGEIAEPIRDTS 408
EPGD SF +++ I+ G + R + FQ G + G +I +GE+ +++ +
Sbjct: 359 NLEPGDKSFAQLVAGIERGVLMSYNRSWSIDDARNKFQFGCEWGQLIEDGELKGVVKNPN 418
Query: 409 ITGVAIEALKKISAVGKDFAIE---TGFCGKGQ 438
G++ + + +SAVG E T +CGKG+
Sbjct: 419 YRGISAQFWRNLSAVGDAGTFEVLGTPYCGKGE 451
>pir||T36780 hypothetical protein SCI28.10 - Streptomyces coelicolor (fragment)
>gi|5525068|emb|CAB50884.1| (AL096844) hypothetical
protein [Streptomyces coelicolor A3(2)]
Length = 435
Score = 82.7 bits (201), Expect = 8e-15
Identities = 101/406 (24%), Positives = 165/406 (39%), Gaps = 28/406 (6%)
Query: 20 AEYIELRYEDLKRTTLTLKDGVFTSFTEKLNRGVAIRVLANGAWGFSSTSDLSKLEEAIK 79
AE+ + R E ++ + L+D ++ + G A+RV+ G WGF+S DL+ L+ A K
Sbjct: 30 AEHADFRLERVRNASWRLRDARPAGSSDTTDLGYAVRVVHGGTWGFASGVDLT-LDAAAK 88
Query: 80 ---EAYKLAKSASETKK-----EKIEL-AEIKPVEDFVKSKMKVKPREVDIEEKVKHLTE 130
+A +AK +++ K E++EL AE + S ++ P V +K L +
Sbjct: 89 VASQAVAMAKLSAQVIKAAGSDERVELAAEPVHADKSWISAYEIDPFSVPDADKAALLAD 148
Query: 131 LEKLLKEDETVKSVNIRYEDGGGQKILLTNEGTRIEWDYNYLWQ--SVYVTGKKEGKLAM 188
L + V V+ K GT L + G+
Sbjct: 149 WSARLLAADGVDHVDASLLTVHENKFYADTAGTVTTQQRVRLHPVLTAVSVDDSSGEFDS 208
Query: 189 ARDSIGAVDYGWELMTEKEPN-EKVKDRLLRKLHSQLNGVAPKRGEFPVVAGPIIVGLIA 247
R GWE +T + + + L ++ + + G + +V P + L
Sbjct: 209 MRTLAPPAGRGWEYLTGTGWDWDSELAEIPELLAEKMRAPSVEAGLYDLVVDPSNLWLTI 268
Query: 248 HEALGHLAEADLTMNSPFK---------DLLGK-QIAPEYVTMS-ERYVEGGFGNDKYDD 296
HE++GH E D + D LGK + E + ++ +R E G YDD
Sbjct: 269 HESIGHATELDRALGYEAAYAGTSFATFDQLGKLRYGSELMNVTGDRTAEHGLATVGYDD 328
Query: 297 EGVPVKDIHIIENGILKEIMLNREYAAKFNME-PNGHARAQDYRYPPIIRMRNTVF--EP 353
EGV + ++++G L L+R A E NG A A + P+ RM N +P
Sbjct: 329 EGVEGQSWDLVKDGTLVGYQLDRRIARLTGFERSNGCAYADSPAHVPVQRMANVSLLPDP 388
Query: 354 GDWSFEEMIEDIKFGYYLVDFRGGQAQLNS-AFQVGIQEGYVIRNG 398
G S E++I + G Y+V R + FQ Q + I NG
Sbjct: 389 GGLSTEDLIGGVDRGIYVVGDRSWSIDMQRYNFQFTGQRFFRIENG 434
>pir||E71135 hypothetical protein PH0849 - Pyrococcus horikoshii
>gi|3257260|dbj|BAA29943.1| (AP000003) 443aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 443
Score = 80.4 bits (195), Expect = 4e-14
Identities = 58/200 (29%), Positives = 102/200 (51%), Gaps = 12/200 (6%)
Query: 232 GEFPVVAGPI-IVGLIAHEALGHLAEADLTMNSPFKDLLGKQIAPEYVTMSE-RYVEGGF 289
G F V+ P+ L+++ A A S F + L +++A E VT+ + + G+
Sbjct: 221 GRFDVIFDPLAFANLLSYMGWAFSAFAVEAGFSYFANKLDQKVASEIVTIKDVGNLPNGY 280
Query: 290 GNDKYDDEGVPVKDIHIIENGILKEIMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNT 349
K+DDEGVP K+ +I GILK + N A K+ E +A P R N
Sbjct: 281 ATRKFDDEGVPTKETILIHKGILKTYLFNTSLAKKYGRETTANAGL----IAP--RAWNI 334
Query: 350 VFEPGDWSFEEMIEDIKFGYYLVD--FRGGQAQLNSAFQVGIQEG-YVIRNGEIAEPIRD 406
V EPGD++ +E+ +++K G Y+ + + Q + F ++G ++I NGE+ +PIR+
Sbjct: 335 VLEPGDYTKDELFQEVKKGIYITNVWYTRFQNYMTGDFSTIPRDGIFLIENGEL-KPIRN 393
Query: 407 TSITGVAIEALKKISAVGKD 426
++ + L+ + A+ K+
Sbjct: 394 IRVSDNMLRILQNVVALSKE 413
>pir||F75033 hypothetical protein PAB1548 - Pyrococcus abyssi (strain Orsay)
>gi|5458676|emb|CAB50163.1| (AJ248287) hypothetical
protein [Pyrococcus abyssi]
Length = 443
Score = 80.0 bits (194), Expect = 5e-14
Identities = 57/200 (28%), Positives = 102/200 (50%), Gaps = 12/200 (6%)
Query: 232 GEFPVVAGPI-IVGLIAHEALGHLAEADLTMNSPFKDLLGKQIAPEYVTMSE-RYVEGGF 289
G+F V+ P+ L+++ A A S F + L +++A E VT+ + + G+
Sbjct: 221 GKFDVIFDPLAFANLLSYMGWAFSAFAVEAGFSYFANKLDQKVASEVVTIKDIGNLPNGY 280
Query: 290 GNDKYDDEGVPVKDIHIIENGILKEIMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNT 349
G K+DDEGVP ++ +IE G LK + N A K+ E +A R N
Sbjct: 281 GTRKFDDEGVPTRETVLIERGTLKTYLFNTSLAKKYGKETTANAGLIS------PRAWNI 334
Query: 350 VFEPGDWSFEEMIEDIKFGYYLVD--FRGGQAQLNSAFQVGIQEG-YVIRNGEIAEPIRD 406
V EPGD++ +E+ +++K G Y+ + + Q + F ++G ++I NGE+ +PIR+
Sbjct: 335 VLEPGDYTKDELFQEVKRGIYITNVWYTRFQNYMTGDFSTIPRDGIFLIENGEL-KPIRN 393
Query: 407 TSITGVAIEALKKISAVGKD 426
++ + L+ I + K+
Sbjct: 394 IRVSDNMLRILQNIVGLTKE 413
>pir||S77207 hypothetical protein slr1435 - Synechocystis sp. (strain PCC 6803)
>gi|1652621|dbj|BAA17541.1| (D90907) PmbA protein
[Synechocystis sp.]
Length = 427
Score = 79.6 bits (193), Expect = 7e-14
Identities = 56/222 (25%), Positives = 107/222 (47%), Gaps = 14/222 (6%)
Query: 210 EKVKDRLLR-KLHSQLNGVAPKRGEFPVV----AGPIIVGLIAHEALGHLAEADLTMNSP 264
E ++ RLL +++ Q+ G G+ P++ A ++ + G D +SP
Sbjct: 194 ENLRQRLLWVEVNQQIQG-----GKMPILLTSGAASLLWDTVGEALHGQRVAED---SSP 245
Query: 265 FKDLLGKQIAPEYVTMSERYVEGGFGNDKYDDEGVPVKDIHIIENGILKEIMLNREYAAK 324
+ + LG+ +A E + +S+ F + +DDEG + + +I+NG + + + E A K
Sbjct: 246 WAEKLGQTVAIEELNISQDPTAIPF-DCPFDDEGSRTQKLALIKNGKIAQFYTDHETAEK 304
Query: 325 FNMEPNGHARAQDYRYPPIIRMRNTVFEPGDWSFEEMIEDIKFGYYLVDFRGGQAQLNSA 384
G+ P + N + PG SF+++++ + G + GG A ++
Sbjct: 305 LGTTTTGNGFRPSLGSAPQPGLVNMLITPGTASFDQLLKKLGNGLVVDQILGGGADISGD 364
Query: 385 FQVGIQEGYVIRNGEIAEPIRDTSITGVAIEALKKISAVGKD 426
F + + GY ++NGEI ++DT ++G E L +I A+G D
Sbjct: 365 FSINVDLGYRVQNGEITGRVKDTMVSGNIYELLNQIIALGSD 406
>sp|P45077|PMBA_HAEIN PMBA PROTEIN HOMOLOG >gi|1075002|pir||C64186 pmbA protein -
Haemophilus influenzae (strain Rd KW20)
>gi|1574709|gb|AAC22807.1| (U32795) pmbA protein (pmbA)
[Haemophilus influenzae Rd]
Length = 451
Score = 78.8 bits (191), Expect = 1e-13
Identities = 91/383 (23%), Positives = 160/383 (41%), Gaps = 34/383 (8%)
Query: 64 GFSSTSDLSKLEEAIKEAYKLAKS-ASETKKEKIELAEIKPVEDFVKSKMKV-KPREVDI 121
G +STSDLS E AIK A + A + A T + K + F +++ ++D+
Sbjct: 77 GNASTSDLS--ESAIKNAVEAALAIAKYTSPDDCTGLADKDLMAFDAPDLELYHAADIDV 134
Query: 122 EEKVKHLTELEK--LLKEDETVKSVNIRYEDGGGQKILLTNEGTRIEWDYNYLWQSVYVT 179
++ + + E+ L ++ + S + G K+ + G + + S V
Sbjct: 135 DKATELALQAEQAALQADERIINSNGASFNSHTGVKVYGNSHGMLQSYLSSRYSLSCSVI 194
Query: 180 GKKEGKLAMARDSIGAVDYGWELMTEKEPNEK---VKDRLLRKLHSQLNGVAPKRGEFPV 236
G E L DY + + E + + V + +K+ S+LN E PV
Sbjct: 195 GGVEDALEN--------DYEYTISREFDKLQSPIWVGENCAKKVVSRLNPQKLSTREVPV 246
Query: 237 V-AGPIIVGLIAHEALGHLAEADLTMNSPFKDLLGKQIAPEYVTMSER-YVEGGFGNDKY 294
+ + G+I+H A + +S D LGKQ+ P++ ++SER ++ + +
Sbjct: 247 IFLNDVATGIISHFAAAISGGSLYRKSSFLLDHLGKQVLPDWFSISERPHLLRRLASTPF 306
Query: 295 DDEGVPVKDIHIIENGILKEIMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFEPG 354
D EGV +D I+ENGIL+ ++ K M GHA + N + +P
Sbjct: 307 DSEGVRTQDREIVENGILQTYLVTSYSGKKLGMSSTGHAGG----------IHNWLVKPN 356
Query: 355 -DWSFEEMIEDIKFGYYLVDFRGGQAQLNSAFQVGIQEGYVIRNGEIAEPIRDTSITGVA 413
++ + G + D G + + G+ + NGEI P+ + +I G
Sbjct: 357 LTGGLTALLRQMGTGLLVTDVMGQGVNIVTGDYSRGASGFWVENGEIQYPVAEITIAGQL 416
Query: 414 IEALKKISAVGKDFA----IETG 432
+ LK + AV D I+TG
Sbjct: 417 QDMLKNMLAVADDIEHRSNIQTG 439
>sp|P24231|PMBA_ECOLI PMBA PROTEIN (TLDE PROTEIN) >gi|96308|pir||S13730 pmbA protein -
Escherichia coli >gi|42440|emb|CAA38091.1| (X54152) pmbA
is involved in the production of antibiotic MccB17
[Escherichia coli] >gi|537077|gb|AAA97132.1| (U14003)
pmbA gene product [Escherichia coli]
>gi|1732440|dbj|BAA07915.1| (D44452) TldE protein
[Escherichia coli] >gi|1790682|gb|AAC77192.1| (AE000494)
maturation of antibiotic MccB17, see tld genes
[Escherichia coli K12]
Length = 450
Score = 74.5 bits (180), Expect = 2e-12
Identities = 66/247 (26%), Positives = 114/247 (45%), Gaps = 20/247 (8%)
Query: 197 DYGWEL---MTEKEPNEKVKDRLLRKLHSQLNGVAPKRGEFPVV-AGPIIVGLIAHEALG 252
DY + + M++ + E V R+ S+L+ + PV+ A + GL H +G
Sbjct: 204 DYAYTIGRAMSDLQTPEWVGADCARRTLSRLSPRKLSTMKAPVIFANEVATGLFGH-LVG 262
Query: 253 HLAEADLTMNSPFK-DLLGKQIAPEYVTMSER-YVEGGFGNDKYDDEGVPVKDIHIIENG 310
+A + S F D LGKQI P+++T+ E ++ G + +D EGV + II++G
Sbjct: 263 AIAGGSVYRKSTFLLDSLGKQILPDWLTIEEHPHLLKGLASTPFDSEGVRTERRDIIKDG 322
Query: 311 ILKEIMLNREYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFEPGDWSFEEMIEDIKFGYY 370
IL + +L A K ++ GHA + N SFE+M++++ G
Sbjct: 323 ILTQWLLTSYSARKLGLKSTGHAGG----------IHNWRIAGQGLSFEQMLKEMGTGLV 372
Query: 371 LVDFRG-GQAQLNSAFQVGIQEGYVIRNGEIAEPIRDTSITGVAIEALKKISAVGKDFAI 429
+ + G G + + + G G+ + NGEI P+ + +I G + + I VG D
Sbjct: 373 VTELMGQGVSAITGDYSRG-AAGFWVENGEIQYPVSEITIAGNLKDMWRNIVTVGNDIET 431
Query: 430 ETGF-CG 435
+ CG
Sbjct: 432 RSNIQCG 438
>pir||B83086 PmbA protein PA4472 [imported] - Pseudomonas aeruginosa (strain
PAO1) >gi|9950709|gb|AAG07860.1|AE004861_1 (AE004861)
PmbA protein [Pseudomonas aeruginosa]
Length = 449
Score = 70.2 bits (169), Expect = 4e-11
Identities = 95/410 (23%), Positives = 170/410 (41%), Gaps = 39/410 (9%)
Query: 35 LTLKDGVFTSF------TEKLNR--GVAIRVLANGAWGFSSTSDLSK--LEEAIKEAYKL 84
++L+ G+ TS T + NR G I + A G +STS + + E + A +
Sbjct: 39 VSLEQGLSTSVRQGEVETVEFNRDQGFGITLYAGQRKGSASTSATGEAAIRETVAAALAI 98
Query: 85 AKSASETKKEKIELAEIKPVEDFVKSKMKVKPREVDIEEKVKHLTELEKLLKEDETVKSV 144
A+ SE E LA+ + + P + E+ V E+ L + +
Sbjct: 99 ARHTSED--ECAGLADAALMARELPELDLYHPWSLSPEQAV------ERALACEAAAFAA 150
Query: 145 NIRYEDGGGQKILLTNEGTRIEWDYNYLWQSVYVTGKKEGKLAMARDSIGAV--DYGWEL 202
+ R G L T++G R+ + ++ + Y + + M + G + DY +++
Sbjct: 151 DKRVTKADGTT-LNTHQGCRV-YGNSHGFIGGYASTRHSLSCVMIAEGEGQMQRDYWYDV 208
Query: 203 MTEKEP---NEKVKDRLLRKLHSQLNGVAPKRGEFPVVAGP-IIVGLIAHEALGHLAEAD 258
E E + R + S+L + E PV+ P I VGL H LG ++
Sbjct: 209 NRRGEALASAESIGRRAAERAASRLGARPVQTAEVPVLFAPEIAVGLFGH-FLGAISGGS 267
Query: 259 LTMNSPFKD-LLGKQIAPEYVTMSER-YVEGGFGNDKYDDEGVPVKDIHIIENGILKEIM 316
L S F + LG+++ PE++++ ER ++ G G+ +D +G+ +ENG L +
Sbjct: 268 LYRKSSFLEGALGQRLFPEWLSIDERPHLVGALGSASFDSDGLATYAKPFVENGELVSYV 327
Query: 317 LNREYAAKFNMEPNGHARAQDYRYPPIIRMRNTVFEPGDWSFEEMIEDIKFGYYLVDFRG 376
L K + +A + N GD +I ++ G + + G
Sbjct: 328 LGTYSGRKLGLPSTANAGG----------VHNLFVSHGDEDQAALIRRMERGLLVTELMG 377
Query: 377 GQAQLNSAFQVGIQEGYVIRNGEIAEPIRDTSITGVAIEALKKISAVGKD 426
L + GY + NGEI P+++ +I + ++I AVGKD
Sbjct: 378 QGVNLVTGDYSRGAAGYWVENGEIQFPVQEVTIAANLRDLFRRIVAVGKD 427
>pir||B69009 conserved hypothetical protein MTH1070 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622168|gb|AAB85559.1| (AE000877) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 430
Score = 69.1 bits (166), Expect = 1e-10
Identities = 88/386 (22%), Positives = 159/386 (40%), Gaps = 43/386 (11%)
Query: 52 GVAIRVLANGAWGFSSTSDLSKLEEAIKEAYKLAKSASETKKEKIELAEIKPVEDFVKSK 111
G+ IR+L G GF+ TSD ++ A++ A + ++LA+ P E+F S+
Sbjct: 48 GIGIRILKEGRMGFAYTSDPDGVDVAVRMA-----------AQNLQLAD--PDENFGFSE 94
Query: 112 MKVKPREVDIEEKVKHLTELEKLLKEDETVKSVNIRYEDG-----GG------QKILLTN 160
P I ++ E+E + + + +N E+G GG + +L +
Sbjct: 95 PSTYPSVKGIHDRSFDDLEVEDSV--EMAGRMINRVLEEGCKPTSGGFTASRIETFILNS 152
Query: 161 EGTRIEWDYNYLWQSVYVTGKKEGKLAMARDSIGAVDYGWELMTEKEPNEKVKDRLLRKL 220
EG + VT + G A +S D +L E V R R
Sbjct: 153 EGVEESSSSTGFSAHISVTAGENGMKTTAYES----DSSCKLDINPE---WVAGRACRIA 205
Query: 221 HSQLNGVAPKRGEFPVVAG-PIIVGLIAHEALGHLAEADLTMNSPFKDLLGKQIAPEYVT 279
+ G + + G P V GL+ A A+ S D +G Q+ E ++
Sbjct: 206 RDSMGGRSIESGRIPAVLDYHAAAGLLGTFAGAFSADNVQRGRSVLADRIGSQVTGEGLS 265
Query: 280 M-SERYVEGGFGNDKYDDEGVPVKDIHIIENGILKEIMLNREYAAKFNMEPNGHARAQDY 338
+ + +EGG G+ +D EG P + ++E+GIL+ M N A+K + G+ + Y
Sbjct: 266 VYDDGTLEGGLGSAPFDGEGTPSQRTALVEDGILRGYMHNIYTASKGRADSTGNG-LRGY 324
Query: 339 RYPPIIRMRNTVFEPGDWSFEEMIEDIKFGYYLVDFRGGQA--QLNSAFQVGIQEGYVIR 396
P + N + E + ++D + G ++ D G ++ F V ++
Sbjct: 325 MEVPAVSTTNFILE---FDSTVPLDDFR-GIFVTDVLGAHTANPISGDFSVEANNAFMAD 380
Query: 397 NGEIAEPIRDTSITGVAIEALKKISA 422
+GE P++ ++G E + K+S+
Sbjct: 381 SGEFT-PVKKAMLSGNIFELMMKVSS 405
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.315 0.136 0.388
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 174263123
Number of Sequences: 2977
Number of extensions: 7730745
Number of successful extensions: 24565
Number of sequences better than 1.0e-10: 46
Number of HSP's better than 0.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 24418
Number of HSP's gapped (non-prelim): 51
length of query: 458
length of database: 189,106,746
effective HSP length: 58
effective length of query: 400
effective length of database: 154,394,500
effective search space: 61757800000
effective search space used: 61757800000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 166 (69.1 bits)