BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1960 (PAB1960) DE:putative protease
(335 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75179 probable proteinase PAB1960 - Pyrococcus abyssi (str... 667 0.0
pir||A71035 probable proteinase IV - Pyrococcus horikoshii >gi|3... 517 e-146
sp|Q58067|Y651_METJA PUTATIVE PROTEASE MJ0651 >gi|2826302|gb|AAB... 130 2e-29
pir||C64381 proteinase IV (EC 3.4.-.-) - Methanococcus jannaschii 130 2e-29
pir||F69207 proteinase IV - Methanobacterium thermoautotrophicum... 126 4e-28
pir||E69990 proteinase IV homolog yteI - Bacillus subtilis >gi|2... 119 4e-26
pir||C64699 proteinase IV (EC 3.4.-.-) - Helicobacter pylori (st... 115 1e-24
pir||F71819 probable proteinase IV - Helicobacter pylori (strain... 113 2e-24
dbj|BAB06917.1| (AP001518) proteinase IV [Bacillus halodurans] 112 5e-24
gb|AAF36737.1| (AC016662) putative protease IV; 48713-44371 [Ara... 112 7e-24
gb|AAF24059.1|AF114385_1 (AF114385) putative protease SppA [Arab... 112 7e-24
sp|Q55682|Y021_SYNY3 PUTATIVE PROTEASE SLR0021 >gi|7451824|pir||... 111 9e-24
pir||H82130 proteinase IV VC1994 [imported] - Vibrio cholerae (g... 105 7e-22
gb|AAC44524.1| (U38524) PspA [Campylobacter jejuni] 104 1e-21
pir||H81422 proteinase Cj0068 [imported] - Campylobacter jejuni ... 104 1e-21
gb|AAC05202.1| (AF042063) putative protease IV [Rickettsia ricke... 103 3e-21
pir||C70478 proteinase IV - Aquifex aeolicus >gi|2984291|gb|AAC0... 103 3e-21
gb|AAC24140.1| (AF071201) unknown [bacteriophage Felix 01] 102 6e-21
pir||G70644 probable sppA protein - Mycobacterium tuberculosis (... 100 2e-20
pir||D71656 proteinase IV (sppA) RP525 - Rickettsia prowazekii >... 98 1e-19
gb|AAD29142.1|AF099088_11 (AF099088) protease IV homolog [Entero... 98 2e-19
pir||T45386 endopeptidase IV [imported] - Mycobacterium leprae >... 97 3e-19
sp|P45243|SPPA_HAEIN PROTEASE IV (ENDOPEPTIDASE IV) (SIGNAL PEPT... 96 7e-19
sp|P73689|SPPA_SYNY3 PROTEASE IV HOMOLOG (ENDOPEPTIDASE IV) (SIG... 96 7e-19
sp|P08395|SPPA_ECOLI PROTEASE IV (ENDOPEPTIDASE IV) (SIGNAL PEPT... 95 1e-18
pir||PRECT4 proteinase IV (EC 3.4.-.-) - Escherichia coli >gi|17... 95 1e-18
gb|AAG34712.1|AF320001_5 (AF320001) putative protease [Acinetoba... 92 1e-17
pir||E83273 probable peptidase PA2973 [imported] - Pseudomonas a... 88 1e-16
sp|Q48513|PFAP_LEPBO PUTATIVE PEPTIDASE PFAP PRECURSOR (PERIPLAS... 83 3e-15
pir||D82527 proteinase IV XF2685 [imported] - Xylella fastidiosa... 82 9e-15
gb|AAG19125.1| (AE005010) proteinase IV homolog; Edp [Halobacter... 81 2e-14
sp|P24213|SOHB_ECOLI POSSIBLE PROTEASE SOHB >gi|7466853|pir||C64... 80 4e-14
emb|CAC11222.1| (AL445063) protease (pspA) related protein [Ther... 80 5e-14
pir||A38115 probable microbial serine proteinase (EC 3.4.21.-), ... 79 8e-14
pir||F75315 endopeptidase IV-related protein - Deinococcus radio... 78 1e-13
sp|P45315|SOHB_HAEIN POSSIBLE PROTEASE SOHB >gi|1075174|pir||D64... 78 2e-13
pir||F71255 probable proteinase IV (sppA) - syphilis spirochete ... 78 2e-13
dbj|BAA89626.1| (AB036665) similar to GPC of lambda [bacteriopha... 76 4e-13
pir||F82247 sohB protein, peptidase U7 family VC1060 [imported] ... 75 2e-12
pir||G72058 proteinase IV, probable CP0134 [imported] - Chlamydo... 74 3e-12
dbj|BAA89643.1| (AB036666) similar to minor capsid protein GPC o... 73 4e-12
pir||F81005 probable proteinase, NMB2127 [imported] - Neisseria ... 70 3e-11
pir||H82025 probable proteinase NMA0305 [imported] - Neisseria m... 70 3e-11
pir||B81803 probable secreted proteinase NMA1778 [imported] - Ne... 70 4e-11
>pir||A75179 probable proteinase PAB1960 - Pyrococcus abyssi (strain Orsay)
>gi|5458022|emb|CAB49512.1| (AJ248284) putative protease
[Pyrococcus abyssi]
Length = 335
Score = 667 bits (1702), Expect = 0.0
Identities = 335/335 (100%), Positives = 335/335 (100%)
Query: 1 MRAEVWKYLSLILTLVLSLSIVSNALLYMQMGELEKYKEMPPSVNETTTIVSPTQENITI 60
MRAEVWKYLSLILTLVLSLSIVSNALLYMQMGELEKYKEMPPSVNETTTIVSPTQENITI
Sbjct: 1 MRAEVWKYLSLILTLVLSLSIVSNALLYMQMGELEKYKEMPPSVNETTTIVSPTQENITI 60
Query: 61 LKLQIERLKREVSFLRSLLESENVTTANATIAVLPIIGPIDSSSALGIIKAIREIRGNDT 120
LKLQIERLKREVSFLRSLLESENVTTANATIAVLPIIGPIDSSSALGIIKAIREIRGNDT
Sbjct: 61 LKLQIERLKREVSFLRSLLESENVTTANATIAVLPIIGPIDSSSALGIIKAIREIRGNDT 120
Query: 121 IKGVLLWIESPGGYVGPVREIYNELKKLGYLKPIVAYVSGYAYSGAYYIACAAREIIAEP 180
IKGVLLWIESPGGYVGPVREIYNELKKLGYLKPIVAYVSGYAYSGAYYIACAAREIIAEP
Sbjct: 121 IKGVLLWIESPGGYVGPVREIYNELKKLGYLKPIVAYVSGYAYSGAYYIACAAREIIAEP 180
Query: 181 LSEVGSIGVIYVHFNAEEYYKMNGIEVEVFKTGPYKDMGADWRGLTPEERDIIKNEIQTY 240
LSEVGSIGVIYVHFNAEEYYKMNGIEVEVFKTGPYKDMGADWRGLTPEERDIIKNEIQTY
Sbjct: 181 LSEVGSIGVIYVHFNAEEYYKMNGIEVEVFKTGPYKDMGADWRGLTPEERDIIKNEIQTY 240
Query: 241 FNDFLEVVSEGRNMTINETKKFATGRAWFAKDVNGTLVDKLGDFDVALKELLKLIGAKKA 300
FNDFLEVVSEGRNMTINETKKFATGRAWFAKDVNGTLVDKLGDFDVALKELLKLIGAKKA
Sbjct: 241 FNDFLEVVSEGRNMTINETKKFATGRAWFAKDVNGTLVDKLGDFDVALKELLKLIGAKKA 300
Query: 301 NVIILNMEDNEFEIGTTSMLYMPASQAYGYIRWRG 335
NVIILNMEDNEFEIGTTSMLYMPASQAYGYIRWRG
Sbjct: 301 NVIILNMEDNEFEIGTTSMLYMPASQAYGYIRWRG 335
>pir||A71035 probable proteinase IV - Pyrococcus horikoshii
>gi|3257998|dbj|BAA30681.1| (AP000006) 334aa long
hypothetical protease IV [Pyrococcus horikoshii]
Length = 334
Score = 517 bits (1318), Expect = e-146
Identities = 248/332 (74%), Positives = 289/332 (86%), Gaps = 1/332 (0%)
Query: 1 MRAEVWKYLSLILTLVLSLSIVSNALLYMQMGELEKYKEMPPSVNETTTIVSPTQENITI 60
M+ VWKY+SLIL LVLSLSIVSNALLY+Q+GE+EKYKE PS NETT + SP ++N+TI
Sbjct: 1 MQEGVWKYISLILALVLSLSIVSNALLYIQIGEVEKYKEGKPSFNETTVLTSP-EDNVTI 59
Query: 61 LKLQIERLKREVSFLRSLLESENVTTANATIAVLPIIGPIDSSSALGIIKAIREIRGNDT 120
LKLQ E+LKREV FL+ + S NVT N T+A+LPI GPID SAL +I+ IR IR NDT
Sbjct: 60 LKLQNEKLKREVEFLKGFIASRNVTYTNVTVAILPIFGPIDDESALNVIEVIRRIRENDT 119
Query: 121 IKGVLLWIESPGGYVGPVREIYNELKKLGYLKPIVAYVSGYAYSGAYYIACAAREIIAEP 180
IKGVL+WIESPGG+VGPVREIY ELKKL Y+KP++AYVSGYAYSG YYIACAA+EI+A P
Sbjct: 120 IKGVLVWIESPGGFVGPVREIYIELKKLDYIKPVIAYVSGYAYSGGYYIACAAKEIVANP 179
Query: 181 LSEVGSIGVIYVHFNAEEYYKMNGIEVEVFKTGPYKDMGADWRGLTPEERDIIKNEIQTY 240
L++VGSIGVIYVHFNAE+YY+MNGIEVEVFKTGPYKDMGADWR LTPEER I++ +IQTY
Sbjct: 180 LADVGSIGVIYVHFNAEKYYEMNGIEVEVFKTGPYKDMGADWRKLTPEERKIVQTQIQTY 239
Query: 241 FNDFLEVVSEGRNMTINETKKFATGRAWFAKDVNGTLVDKLGDFDVALKELLKLIGAKKA 300
FNDFL+VVSEGRNMT+ + KKFATGR WFAKDVNGTLVDKLGD D+ALKELLKLIGAKKA
Sbjct: 240 FNDFLQVVSEGRNMTVEDVKKFATGRTWFAKDVNGTLVDKLGDLDLALKELLKLIGAKKA 299
Query: 301 NVIILNMEDNEFEIGTTSMLYMPASQAYGYIR 332
NVI+ ++ +FEIGTT++LYMP + YGYIR
Sbjct: 300 NVIVYDVNRGKFEIGTTALLYMPPNLVYGYIR 331
>sp|Q58067|Y651_METJA PUTATIVE PROTEASE MJ0651 >gi|2826302|gb|AAB98642.1| (U67512)
protease IV (sppA) [Methanococcus jannaschii]
Length = 311
Score = 130 bits (324), Expect = 2e-29
Identities = 80/228 (35%), Positives = 126/228 (55%), Gaps = 7/228 (3%)
Query: 97 IGPIDSSSALGIIKAIREIRGNDTIKGVLLWIESPGGYVGPVREIYNELKKLGYLKPIVA 156
I P A I + ++ +D++KGVLL + SPGG V ++ ++++L KP+V
Sbjct: 61 IFPQQKKDARYYINLLDDLEKDDSVKGVLLVVNSPGGEVIASEKLARKVEELAKKKPVVV 120
Query: 157 YVSGYAYSGAYYIACAAREIIAEPLSEVGSIGVIYVHFNAEEYY---KMNGIEVEVFKTG 213
YV G SGAY ++ A I+AE S VGSIG V + YY K GI V K G
Sbjct: 121 YVEGLDASGAYMVSAPADYIVAEKHSIVGSIG---VRMDLMHYYGLMKKLGINVTTIKAG 177
Query: 214 PYKDMGADWRGLTPEERDIIKNEIQTYFNDFLEVVSEGRNMTINETKKFATGRAWFAKDV 273
YKD+G+ +R +T EE++ ++ I + DF++ V+E R+++IN T K A G+ + +D
Sbjct: 178 KYKDIGSPFRPMTKEEKEYLQKMINETYMDFVKWVAEHRHLSINYTLKIADGKIYSGEDA 237
Query: 274 NGT-LVDKLGDFDVALKELLKLIGAKKANVIILNMEDNEFEIGTTSML 320
LVD++G + ALK+L +L ++ +E+N+ G T L
Sbjct: 238 KKVGLVDEVGTEEDALKKLEQLANVSNPEIVEYGLEENKGLFGLTYYL 285
>pir||C64381 proteinase IV (EC 3.4.-.-) - Methanococcus jannaschii
Length = 315
Score = 130 bits (324), Expect = 2e-29
Identities = 80/228 (35%), Positives = 126/228 (55%), Gaps = 7/228 (3%)
Query: 97 IGPIDSSSALGIIKAIREIRGNDTIKGVLLWIESPGGYVGPVREIYNELKKLGYLKPIVA 156
I P A I + ++ +D++KGVLL + SPGG V ++ ++++L KP+V
Sbjct: 65 IFPQQKKDARYYINLLDDLEKDDSVKGVLLVVNSPGGEVIASEKLARKVEELAKKKPVVV 124
Query: 157 YVSGYAYSGAYYIACAAREIIAEPLSEVGSIGVIYVHFNAEEYY---KMNGIEVEVFKTG 213
YV G SGAY ++ A I+AE S VGSIG V + YY K GI V K G
Sbjct: 125 YVEGLDASGAYMVSAPADYIVAEKHSIVGSIG---VRMDLMHYYGLMKKLGINVTTIKAG 181
Query: 214 PYKDMGADWRGLTPEERDIIKNEIQTYFNDFLEVVSEGRNMTINETKKFATGRAWFAKDV 273
YKD+G+ +R +T EE++ ++ I + DF++ V+E R+++IN T K A G+ + +D
Sbjct: 182 KYKDIGSPFRPMTKEEKEYLQKMINETYMDFVKWVAEHRHLSINYTLKIADGKIYSGEDA 241
Query: 274 NGT-LVDKLGDFDVALKELLKLIGAKKANVIILNMEDNEFEIGTTSML 320
LVD++G + ALK+L +L ++ +E+N+ G T L
Sbjct: 242 KKVGLVDEVGTEEDALKKLEQLANVSNPEIVEYGLEENKGLFGLTYYL 289
>pir||F69207 proteinase IV - Methanobacterium thermoautotrophicum (strain Delta
H) >gi|2621896|gb|AAB85306.1| (AE000858) protease IV
[Methanobacterium thermoautotrophicum]
Length = 287
Score = 126 bits (313), Expect = 4e-28
Identities = 78/225 (34%), Positives = 120/225 (52%), Gaps = 11/225 (4%)
Query: 90 TIAVLPIIGPI--------DSSSALGIIKAIREIRGNDTIKGVLLWIESPGGYVGPVREI 141
TIA++P+ G I D I + I E + ++K ++L I SPGG E+
Sbjct: 34 TIAIIPVHGAIAYDTAGFSDGVDPDDIKELIAEANSDPSVKAIVLDINSPGGTPVASEEL 93
Query: 142 YNELKKLGYLKPIVAYVSGYAYSGAYYIACAAREIIAEPLSEVGSIGVIYVHFNAEEYYK 201
+ + K KP+V+++S SGAY A A+ I+A P + VGSIGVI + + Y+
Sbjct: 94 MDAINKSE--KPVVSWISDSGTSGAYLAASASDRIVASPSAWVGSIGVILDLTDLSQMYR 151
Query: 202 MNGIEVEVFKTGPYKDMGADWRGLTPEERDIIKNEIQTYFNDFLEVVSEGRNMTINETKK 261
GI K G YKDMGAD+R +T EER ++++ + ++ F++ V+ RN++++ K
Sbjct: 152 QMGINKYAIKAGEYKDMGADYRMITDEERQMLQSMVNEEYDYFIKTVAANRNLSVSYVKS 211
Query: 262 FATGRAWFAKD-VNGTLVDKLGDFDVALKELLKLIGAKKANVIIL 305
A GR + + V LVD G D A++ KL G K N I L
Sbjct: 212 LAEGRIFTGRQAVRNRLVDFTGGKDYAVEVAAKLAGVKNYNTITL 256
>pir||E69990 proteinase IV homolog yteI - Bacillus subtilis
>gi|2293234|gb|AAC00312.1| (AF008220) putative protease
[Bacillus subtilis] >gi|2635437|emb|CAB14931.1| (Z99119)
similar to protease IV [Bacillus subtilis]
Length = 335
Score = 119 bits (296), Expect = 4e-26
Identities = 92/283 (32%), Positives = 147/283 (51%), Gaps = 24/283 (8%)
Query: 66 ERLKREVSFLRSLL-ESENVTTANAT----IAVLPIIGPI----DSSSALG--------I 108
E +K + L SL ES+ T N + IAVL + G I DSSS LG
Sbjct: 30 ESVKGAQTDLTSLTDESQEKTLENGSPSSKIAVLEVSGTIQDNGDSSSLLGADGYNHRTF 89
Query: 109 IKAIREIRGNDTIKGVLLWIESPGGYVGPVREIYNELKKLGY--LKPIVAYVSGYAYSGA 166
+K + + + T+KG++L + SPGG V EI+ +L+++ KPI + A SG
Sbjct: 90 LKNLERAKDDKTVKGIVLKVNSPGGGVYESAEIHKKLEEIKKETKKPIYVSMGSMAASGG 149
Query: 167 YYIACAAREIIAEPLSEVGSIGVIYVHFNAEEYYKMNGIEVEVFKTGPYKDMGADWRGLT 226
YYI+ AA +I A P + GS+GVI N + GI E K+G +KD+ + R +T
Sbjct: 150 YYISTAADKIFATPETLTGSLGVIMESVNYSKLADKLGISFETIKSGAHKDIMSPSREMT 209
Query: 227 PEERDIIKNEIQTYFNDFLEVVSEGRNMTINETKKFATGRAWFAKDVNG-TLVDKLGDFD 285
EE++I+++ + + F++V+S+GR M E KK A GR + + LVD+LG +D
Sbjct: 210 KEEKNIMQSMVDNSYEGFVDVISKGRGMPKAEVKKIADGRVYDGRQAKKLNLVDELGFYD 269
Query: 286 VALKELLKLIGAKKANVIILNMEDNEFEIGTTSMLYMPASQAY 328
+ + K K N +++ E++ G S+ M A++ +
Sbjct: 270 DTITAMKKDHKDLK-NASVISYEES---FGLGSLFSMGANKMF 308
>pir||C64699 proteinase IV (EC 3.4.-.-) - Helicobacter pylori (strain 26695)
>gi|2314611|gb|AAD08477.1| (AE000644) protease IV (PspA)
[Helicobacter pylori 26695]
Length = 292
Score = 115 bits (284), Expect = 1e-24
Identities = 78/250 (31%), Positives = 123/250 (49%), Gaps = 4/250 (1%)
Query: 82 ENVTTANATIAVLPIIGPIDSSSALGIIKAIREIRGNDTIKGVLLWIESPGGYVGPVREI 141
E+ +A +A L + G I S+ K + +I +IKGVLL I+SPGG V E+
Sbjct: 41 ESAPSAPPNLAKLYLNGAIFSTEDFD--KEVDKILKTPSIKGVLLLIDSPGGAVSASVEL 98
Query: 142 YNELKKLGYLKPIVAYVSGYAYSGAYYIACAAREIIAEPLSEVGSIGVIYVHFNAEEYYK 201
++ L P++AY G SG+YY A E+ A S +GSIGVI+ N E
Sbjct: 99 SEKIADLKQKMPVLAYARGVMASGSYYAGMQASEVYASKASLIGSIGVIFSGANVENLLN 158
Query: 202 MNGIEVEVFKTGPYKDMGADWRGLTPEERDIIKNEIQTYFNDFLEVVSEGRNMTINETKK 261
G+ + G YK++G R P E+D ++N + + F+ V++ R + + K
Sbjct: 159 KVGVATQGVHAGEYKEIGTFTRAWKPNEKDFLQNLVNEQYQMFVNDVAKARKLDAKDYKD 218
Query: 262 FATGRAWFA-KDVNGTLVDKLGDFDVALKELLKLIGAKKANVIILNMEDNEFEIGTTSML 320
FA G+ + A K + L+DK+ A L++L KKA + + + E T S
Sbjct: 219 FAEGKVFSAQKALKLKLIDKISTIKQAQDRLMELSKVKKAYWLEKSPMERFIEKATQSAT 278
Query: 321 YMPASQAYGY 330
+ +QA+GY
Sbjct: 279 NI-ITQAFGY 287
>pir||F71819 probable proteinase IV - Helicobacter pylori (strain J99)
>gi|4155951|gb|AAD06917.1| (AE001556) putative PROTEASE
IV [Helicobacter pylori J99]
Length = 292
Score = 113 bits (281), Expect = 2e-24
Identities = 76/250 (30%), Positives = 124/250 (49%), Gaps = 4/250 (1%)
Query: 82 ENVTTANATIAVLPIIGPIDSSSALGIIKAIREIRGNDTIKGVLLWIESPGGYVGPVREI 141
E+ + +A L + G I S+ K + +I +IKGVLL I+SPGG V E+
Sbjct: 41 ESAPSEPPNLAKLYLNGAIFSTEDFD--KEVDKILKTPSIKGVLLLIDSPGGAVSASVEL 98
Query: 142 YNELKKLGYLKPIVAYVSGYAYSGAYYIACAAREIIAEPLSEVGSIGVIYVHFNAEEYYK 201
++ L P++AY G SG+YY A E+ A S +GSIGVI+ N E
Sbjct: 99 SEKIADLKQKMPVLAYARGVMASGSYYAGMQASEVYASKASLIGSIGVIFSSANVENLLN 158
Query: 202 MNGIEVEVFKTGPYKDMGADWRGLTPEERDIIKNEIQTYFNDFLEVVSEGRNMTINETKK 261
G+ + G YK++G R P E++ ++N + + F++ V++ R + + K
Sbjct: 159 KVGVATQGVHAGEYKEIGTFTRAWKPNEKEFLQNLVNEQYQMFVDDVAKARKLNAKDYKD 218
Query: 262 FATGRAWFA-KDVNGTLVDKLGDFDVALKELLKLIGAKKANVIILNMEDNEFEIGTTSML 320
FA G+ + A K + L+DK+ A L++L KKA + + + E T S+
Sbjct: 219 FAEGKVFSAQKALKLKLIDKISTIKQAQDRLMELSKVKKAYWLEKSPMERFIEKATQSVT 278
Query: 321 YMPASQAYGY 330
+ +QA+GY
Sbjct: 279 SI-ITQAFGY 287
>dbj|BAB06917.1| (AP001518) proteinase IV [Bacillus halodurans]
Length = 331
Score = 112 bits (278), Expect = 5e-24
Identities = 72/231 (31%), Positives = 121/231 (52%), Gaps = 15/231 (6%)
Query: 82 ENVTTANATIAVLPIIGPI-DSSSALGII-----------KAIREIRGNDTIKGVLLWIE 129
E T +IA+L + G I D+ SA ++ K + + + I G++L +
Sbjct: 49 ETGTDFGKSIAILELSGVIQDTGSAPSLLNTGVYHHRDFLKQLEKAGEDPNIAGIILQVN 108
Query: 130 SPGGYVGPVREIYNELKKL--GYLKPIVAYVSGYAYSGAYYIACAAREIIAEPLSEVGSI 187
+PGG V EI+ +++++ KP+ + A SG YYI+ A +I A P + GSI
Sbjct: 109 TPGGGVLESAEIHKQVEEIVQDSEKPVYVSMGNMAASGGYYISAPATKIYAHPQTITGSI 168
Query: 188 GVIYVHFNAEEYYKMNGIEVEVFKTGPYKDMGADWRGLTPEERDIIKNEIQTYFNDFLEV 247
GVI + + GIE FK+GPYKD+ + R +T EE DI++ + +++F+ V
Sbjct: 169 GVIMQSIDISGLAENLGIEFNTFKSGPYKDILSQTREVTDEEEDILQTLVDEMYDEFVRV 228
Query: 248 VSEGRNMTINETKKFATGRAWFAKDVNGT-LVDKLGDFDVALKELLKLIGA 297
+ +GR M+ E ++ A GR + T LVD+LG D ++ + + +GA
Sbjct: 229 IVDGRGMSETEVRELADGRIYTGSQAVATGLVDELGGLDDVIESMKEDLGA 279
>gb|AAF36737.1| (AC016662) putative protease IV; 48713-44371 [Arabidopsis thaliana]
Length = 677
Score = 112 bits (277), Expect = 7e-24
Identities = 68/210 (32%), Positives = 110/210 (52%), Gaps = 7/210 (3%)
Query: 95 PIIGPIDSSSALGIIKAIREIRGNDTIKGVLLWIESPGGYVGPVREIYNELKKLGYLKPI 154
P+ P + A +I+ IR +R + K ++ I+SPGG ++ E+K L KP+
Sbjct: 391 PLSTPGSAIIAEQLIEKIRSVRESKKYKAAIIRIDSPGGDALASDLMWREIKLLAETKPV 450
Query: 155 VAYVSGYAYSGAYYIACAAREIIAEPLSEVGSIGVIYVHFNAEEYYKMNGIEVEVFKTGP 214
+A +S A SG YY+A AA I+AE L+ GSIGV+ F + Y+ G E G
Sbjct: 451 IASMSDVAASGGYYMAMAANAIVAENLTLTGSIGVVTARFTLAKLYEKIGFNKETISRGK 510
Query: 215 YKD-MGADWRGLTPEERDIIKNEIQTYFNDFLEVVSEGRNMTINETKKFATGRAWFAKDV 273
Y + +GA+ R L PEE ++ + Q + F + + R+M +++ ++ A GR W KD
Sbjct: 511 YAELLGAEERPLKPEEAELFEKSAQHAYQLFRDKAALSRSMPVDKMEEVAQGRVWTGKDA 570
Query: 274 NGT-LVDKLGDFDVALKELLKLIGAKKANV 302
+ L+D +G A+ I +KAN+
Sbjct: 571 HSRGLIDAVGGLSRAI-----AIAKQKANI 595
>gb|AAF24059.1|AF114385_1 (AF114385) putative protease SppA [Arabidopsis thaliana]
Length = 680
Score = 112 bits (277), Expect = 7e-24
Identities = 68/210 (32%), Positives = 110/210 (52%), Gaps = 7/210 (3%)
Query: 95 PIIGPIDSSSALGIIKAIREIRGNDTIKGVLLWIESPGGYVGPVREIYNELKKLGYLKPI 154
P+ P + A +I+ IR +R + K ++ I+SPGG ++ E+K L KP+
Sbjct: 394 PLSTPGSAIIAEQLIEKIRSVRESKKYKAAIIRIDSPGGDALASDLMWREIKLLAETKPV 453
Query: 155 VAYVSGYAYSGAYYIACAAREIIAEPLSEVGSIGVIYVHFNAEEYYKMNGIEVEVFKTGP 214
+A +S A SG YY+A AA I+AE L+ GSIGV+ F + Y+ G E G
Sbjct: 454 IASMSDVAASGGYYMAMAANAIVAENLTLTGSIGVVTARFTLAKLYEKIGFNKETISRGK 513
Query: 215 YKD-MGADWRGLTPEERDIIKNEIQTYFNDFLEVVSEGRNMTINETKKFATGRAWFAKDV 273
Y + +GA+ R L PEE ++ + Q + F + + R+M +++ ++ A GR W KD
Sbjct: 514 YAELLGAEERPLKPEEAELFEKSAQHAYQLFRDKAALSRSMPVDKMEEVAQGRVWTGKDA 573
Query: 274 NGT-LVDKLGDFDVALKELLKLIGAKKANV 302
+ L+D +G A+ I +KAN+
Sbjct: 574 HSRGLIDAVGGLSRAI-----AIAKQKANI 598
>sp|Q55682|Y021_SYNY3 PUTATIVE PROTEASE SLR0021 >gi|7451824|pir||S76356 proteinase IV (EC
3.4.-.-) 1 - Synechocystis sp. (strain PCC 6803)
>gi|1001581|dbj|BAA10208.1| (D64000) protease IV
[Synechocystis sp.]
Length = 277
Score = 111 bits (276), Expect = 9e-24
Identities = 74/226 (32%), Positives = 117/226 (51%), Gaps = 2/226 (0%)
Query: 85 TTANATIAVLPIIGPIDSSSALGIIKAIREIRGNDTIKGVLLWIESPGGYVGPVREIYNE 144
T+ IA + + G I S + ++KA++ + +L+ I+SPGG V +EIY +
Sbjct: 7 TSTRKKIARIEVTGAIASGTRKAVLKALKTVE-EKKYPALLVRIDSPGGTVVDSQEIYTK 65
Query: 145 LKKLGYLKPIVAYVSGYAYSGAYYIACAAREIIAEPLSEVGSIGVIYVHFNAEEYYKMNG 204
LK+L +VA + SG YIA I+A + GSIGVI N E + G
Sbjct: 66 LKQLSEKIKVVASFGNISASGGVYIAMGCPHIMANSGTITGSIGVILRGNNLERLLEKVG 125
Query: 205 IEVEVFKTGPYKDMGADWRGLTPEERDIIKNEIQTYFNDFLEVVSEGRNMTINETKKFAT 264
+ +V K+GPYKD+ + R L PEE+ I++ I + F+ V+ GRN+ + + K+FA
Sbjct: 126 VSFKVIKSGPYKDILSFDRELLPEEQSILQALIDDSYGQFVSTVAAGRNLAVEKVKEFAD 185
Query: 265 GRAWFAKD-VNGTLVDKLGDFDVALKELLKLIGAKKANVIILNMED 309
GR + + + LVD+LG + A + L G V + +ED
Sbjct: 186 GRIFTGQQALELGLVDRLGTEEDARQWAATLAGLDPDKVELDTIED 231
>pir||H82130 proteinase IV VC1994 [imported] - Vibrio cholerae (group O1 strain
N16961) >gi|9656536|gb|AAF95142.1| (AE004274) protease
IV [Vibrio cholerae]
Length = 616
Score = 105 bits (260), Expect = 7e-22
Identities = 71/221 (32%), Positives = 113/221 (51%), Gaps = 9/221 (4%)
Query: 76 RSLLESENVTTANATIAVLPIIGPIDSSSALGIIKA------IREIRGNDTIKGVLLWIE 129
++ ++ +T AN V+ +D S G + +RE R + +K V+L ++
Sbjct: 313 KTTIKPTTLTDANDIAVVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSNVKAVVLRVD 372
Query: 130 SPGGYVGPVREIYNELKKLGYL-KPIVAYVSGYAYSGAYYIACAAREIIAEPLSEVGSIG 188
SPGG I NE++ L KP+V +S A SG Y+I+ +A +I+A+P + GSIG
Sbjct: 373 SPGGSAFASEVIRNEIEALKAAGKPVVVSMSSLAASGGYWISMSADKIVAQPTTLTGSIG 432
Query: 189 VIYVHFNAEEYYKMNGIEVEVFKTGPYKDMGADWRGLTPEERDIIKNEIQTYFNDFLEVV 248
+ V E+ GI + T P+ G GLT +D I+ I+ + F+ +V
Sbjct: 433 IFSVITTFEKGLNNLGIYTDGVGTTPFSGQGLT-TGLTQGAKDAIQLGIEHGYQRFISLV 491
Query: 249 SEGRNMTINETKKFATGRAWFAKDVNGT-LVDKLGDFDVAL 288
+E R +T+ + A GR W A+D LVD+LGDFD A+
Sbjct: 492 AEKRGLTLKAVDELAQGRVWTAQDAQTLGLVDQLGDFDDAV 532
>gb|AAC44524.1| (U38524) PspA [Campylobacter jejuni]
Length = 298
Score = 104 bits (257), Expect = 1e-21
Identities = 69/218 (31%), Positives = 112/218 (50%), Gaps = 3/218 (1%)
Query: 78 LLESENVTTANATIAVLPIIGPIDSSSALGIIKAIREIRGNDTIKGVLLWIESPGGYVGP 137
L+ S N ++ A + + + G I SSA +++ I + + IKGVL I+SPGG P
Sbjct: 35 LMPSANSSSNLANLERIDLKGEIFDSSA--VLEKIINAKNDSNIKGVLFVIDSPGGAFAP 92
Query: 138 VREIYNELKKLGYLKPIVAYVSGYAYSGAYYIACAAREIIAEPLSEVGSIGVIYVHFNAE 197
E+ +K L KP++ Y SG SG+Y A +I+A P S +GSIGVI +
Sbjct: 93 SMELALAIKDLKIKKPVLVYASGTMASGSYLAGVGANKILANPASFIGSIGVIMQGADLS 152
Query: 198 EYYKMNGIEVEVFKTGPYKDMGADWRGLTPEERDIIKNEIQTYFNDFLEVVSEGRNMTIN 257
GI+ + + G +K G R ER+ ++ I ++ F V++ R + +N
Sbjct: 153 GLANKLGIKEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQSYDLFTGFVAKERALDLN 212
Query: 258 ETKKFATGRAWF-AKDVNGTLVDKLGDFDVALKELLKL 294
+ ++A R + AK L+D+L +++ A KEL KL
Sbjct: 213 KKDQWANARVFLAAKAKELGLIDELSNYENAKKELEKL 250
>pir||H81422 proteinase Cj0068 [imported] - Campylobacter jejuni (strain NCTC
11168) >gi|6967566|emb|CAB72555.1| (AL139074) protease
[Campylobacter jejuni]
Length = 298
Score = 104 bits (257), Expect = 1e-21
Identities = 69/218 (31%), Positives = 112/218 (50%), Gaps = 3/218 (1%)
Query: 78 LLESENVTTANATIAVLPIIGPIDSSSALGIIKAIREIRGNDTIKGVLLWIESPGGYVGP 137
L+ S N ++ A + + + G I SSA +++ I + + IKGVL I+SPGG P
Sbjct: 35 LIPSANSSSNLANLERIDLKGEIFDSSA--VLEKIINAKNDSNIKGVLFVIDSPGGAFAP 92
Query: 138 VREIYNELKKLGYLKPIVAYVSGYAYSGAYYIACAAREIIAEPLSEVGSIGVIYVHFNAE 197
E+ +K L KP++ Y SG SG+Y A +I+A P S +GSIGVI +
Sbjct: 93 SMELALAIKDLKIKKPVLVYASGTMASGSYLAGVGANKILANPASFIGSIGVIMQGADLS 152
Query: 198 EYYKMNGIEVEVFKTGPYKDMGADWRGLTPEERDIIKNEIQTYFNDFLEVVSEGRNMTIN 257
GI+ + + G +K G R ER+ ++ I ++ F V++ R + +N
Sbjct: 153 GLANKLGIKEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQSYDLFTGFVAKERALDLN 212
Query: 258 ETKKFATGRAWF-AKDVNGTLVDKLGDFDVALKELLKL 294
+ ++A R + AK L+D+L +++ A KEL KL
Sbjct: 213 KKDQWANARVFLAAKAKELGLIDELSNYENAKKELEKL 250
>gb|AAC05202.1| (AF042063) putative protease IV [Rickettsia rickettsii]
>gi|2970341|gb|AAC05973.1| (AF042064) putative protease
IV; signal peptide peptidase [Rickettsia rickettsii]
Length = 304
Score = 103 bits (254), Expect = 3e-21
Identities = 71/197 (36%), Positives = 104/197 (52%), Gaps = 4/197 (2%)
Query: 110 KAIREIRGNDTIKGVLLWIESPGGYVGPVREIYNELKKLGYLKPIVAYVSGYAYSGAYYI 169
K +++I + IK +++ + SPGG V +IYN L+K+ KP+V + A SG Y I
Sbjct: 72 KKLKKIIDDSHIKALIVNVNSPGGTVVGAEKIYNILRKISAKKPVVIVMGTMAASGGYLI 131
Query: 170 ACAAREIIAEPLSEVGSIGVIYVHFNAEEYYKMNGIEVEVFKTGPYKDMGADWRGLTPEE 229
+ II+ + GSIGVI E + GI+ FK+G K + LT
Sbjct: 132 SLGGDYIISHNGTITGSIGVILQTAEVTELAQKLGIKFNNFKSGELKAVPNPTEKLTEAV 191
Query: 230 RDIIKNEIQTYFNDFLEVVSEGRNMTINETKKFATGRAWFAKD-VNGTLVDKLGDFDVAL 288
R I + I+ +N FLE+VSE RN+ I E KK A GR + + + LVD +G D AL
Sbjct: 192 RVAIMDNIEDTYNFFLELVSERRNLPIEEVKKLADGRVYSGRQALKLKLVDAIGSEDTAL 251
Query: 289 KELLKLIGAKKANVIIL 305
K L ++ +K NV +L
Sbjct: 252 KWLQEV---QKINVNLL 265
>pir||C70478 proteinase IV - Aquifex aeolicus >gi|2984291|gb|AAC07815.1|
(AE000771) proteinase IV [Aquifex aeolicus]
Length = 283
Score = 103 bits (254), Expect = 3e-21
Identities = 68/222 (30%), Positives = 117/222 (52%), Gaps = 6/222 (2%)
Query: 91 IAVLPIIGPIDSSSALGIIKAIREIRGNDTIKGVLLWIESPGGYVGPVREIYNELKKLGY 150
IAVL + G I + L + I ++ + + ++L ++SPGG VG +EIY +++
Sbjct: 34 IAVLKLSGVIVNPYPL--VNKIERLKDSKNVVALVLRVDSPGGSVGASQEIYRAIERFKS 91
Query: 151 L-KPIVAYVSGYAYSGAYYIACAAREIIAEPLSEVGSIGVIYVHFNAEEYYKMNGIEVEV 209
KP+V + A SG YY++ A I A + GSIGVI H ++ + GIE
Sbjct: 92 AGKPVVISMGNVAASGGYYVSAAGNYIFANEGTITGSIGVIIQHVAYKKLVEKLGIEATA 151
Query: 210 FKTGPYKDMGADWRGLTPEERDIIKNEIQTYFNDFLEVVSEGRNMTINETK--KFATGRA 267
KTG +KD + +R LT EE++ ++N + F++ + + R+ I+E K + A GR
Sbjct: 152 IKTGKFKDTLSPFRELTQEEKEYLQNLVNEALEQFIQAILKYRSNKISEEKLREIADGRI 211
Query: 268 WFAKD-VNGTLVDKLGDFDVALKELLKLIGAKKANVIILNME 308
+ + + LVD+LG A+++ +L G + A + + E
Sbjct: 212 FTGRQALELGLVDELGSLYDAIEKAKELSGYRDAKPVFIQEE 253
>gb|AAC24140.1| (AF071201) unknown [bacteriophage Felix 01]
Length = 442
Score = 102 bits (252), Expect = 6e-21
Identities = 62/202 (30%), Positives = 105/202 (51%), Gaps = 13/202 (6%)
Query: 72 VSFLRSLLESENVTTANATIAVLPIIGPIDS-------------SSALGIIKAIREIRGN 118
V+F + E+ ++ IA++PI+G + SS G+ + E +
Sbjct: 43 VNFDKPKGEARSLLKVKDDIAIIPIMGGLTHRMTFIDAMCTGGLSSYEGLRRGFDEALAD 102
Query: 119 DTIKGVLLWIESPGGYVGPVREIYNELKKLGYLKPIVAYVSGYAYSGAYYIACAAREIIA 178
++IK ++L I+S GG E+ + K I+AYV +A S AY +A +A EIIA
Sbjct: 103 ESIKTIVLHIDSGGGEASGCFELARHIMASRGQKKIIAYVDEFACSAAYALASSAEEIIA 162
Query: 179 EPLSEVGSIGVIYVHFNAEEYYKMNGIEVEVFKTGPYKDMGADWRGLTPEERDIIKNEIQ 238
P ++VGSIGVI VH + ++ NG+ + V K G +K MG+ ++ L+ E ++ ++ I
Sbjct: 163 SPDADVGSIGVIMVHQELTKAFEKNGVTINVIKAGEFKGMGSPFQALSEESKERLQKRIN 222
Query: 239 TYFNDFLEVVSEGRNMTINETK 260
+ F V+E RN++ K
Sbjct: 223 DTYATFTGFVAESRNLSEEAVK 244
>pir||G70644 probable sppA protein - Mycobacterium tuberculosis (strain H37RV)
>gi|1806192|emb|CAB06448.1| (Z84395) sppA [Mycobacterium
tuberculosis]
Length = 623
Score = 100 bits (247), Expect = 2e-20
Identities = 71/223 (31%), Positives = 112/223 (49%), Gaps = 16/223 (7%)
Query: 90 TIAVLPIIGPIDS------------SSALG--IIKAIREIRGNDTIKGVLLWIESPGGYV 135
TIAV+ + GPI + SSA G I A+RE+ +D++ ++L ++SPGG V
Sbjct: 331 TIAVVTLEGPIVNGRGGPQFLPLGPSSAGGDTIAAALREVAADDSVSAIVLRVDSPGGSV 390
Query: 136 GPVREIYNELKKLGYL-KPIVAYVSGYAYSGAYYIACAAREIIAEPLSEVGSIGVIYVHF 194
I+ E+ + KP+VA + A SG YY++ A I+A P + GSIGVI
Sbjct: 391 TASETIWREVARARDRGKPVVASMGAVAASGGYYVSMGADAIVANPGTITGSIGVITGKL 450
Query: 195 NAEEYYKMNGIEVEVFKTGPYKDMGADWRGLTPEERDIIKNEIQTYFNDFLEVVSEGRNM 254
+ G+ + +T D + TP+++ + E +++DF+E V+EGR M
Sbjct: 451 VVRDLKDRLGVGSDAVRTNANADAWSIDAPFTPDQQAHREAEADLFYSDFVERVAEGRKM 510
Query: 255 TINETKKFATGRAWFAKD-VNGTLVDKLGDFDVALKELLKLIG 296
T + A GR W D ++ LVD+LG A++ L G
Sbjct: 511 TTDAVDVVARGRVWTGADALDRGLVDELGGLRTAVRRAKVLAG 553
>pir||D71656 proteinase IV (sppA) RP525 - Rickettsia prowazekii
>gi|3861074|emb|CAA14974.1| (AJ235272) PROTEASE IV
(sppA) [Rickettsia prowazekii]
Length = 305
Score = 98.3 bits (241), Expect = 1e-19
Identities = 69/212 (32%), Positives = 109/212 (50%), Gaps = 7/212 (3%)
Query: 110 KAIREIRGNDTIKGVLLWIESPGGYVGPVREIYNELKKLGYLKPIVAYVSGYAYSGAYYI 169
K +++I + IK +++ + SPGG V +IYN L+K+ KP+V + A SG Y I
Sbjct: 72 KKLKKIIDDSHIKALIVNVNSPGGTVVGSEKIYNILRKISAKKPVVVIMGTMATSGGYLI 131
Query: 170 ACAAREIIAEPLSEVGSIGVIYVHFNAEEYYKMNGIEVEVFKTGPYKDMGADWRGLTPEE 229
+ II+ + GSIGVI E + GI+ FK+G +K + LT
Sbjct: 132 SLGGDYIISHNGTITGSIGVILQTAEVTELAQKLGIKFNNFKSGAFKAVPNPTEKLTEAV 191
Query: 230 RDIIKNEIQTYFNDFLEVVSEGRNMTINETKKFATGRAWFAKD-VNGTLVDKLGDFDVAL 288
R I I+ + F+E+VSE R++ I E +K A GR + + + LVD +G D AL
Sbjct: 192 RLAIMENIEDTYKFFIELVSERRSLPIEEVQKLADGRVYSGRQALKLRLVDTIGSEDTAL 251
Query: 289 KELLKLIGAKKANVIILNMEDNEFEIGTTSML 320
K L ++ KK N+ N+ ++++ S L
Sbjct: 252 KWLQEI---KKINI---NLTIKDYQLKPKSTL 277
>gb|AAD29142.1|AF099088_11 (AF099088) protease IV homolog [Enterococcus faecium]
Length = 344
Score = 97.5 bits (239), Expect = 2e-19
Identities = 65/194 (33%), Positives = 99/194 (50%), Gaps = 2/194 (1%)
Query: 112 IREIRGNDTIKGVLLWIESPGGYVGPVREIYNELKKLGYLK-PIVAYVSGYAYSGAYYIA 170
+++I+ + +KGVLL + SPGG + EI E+ K+ L PI A SG YYI+
Sbjct: 97 LKKIQEDKAVKGVLLEVNSPGGGIYESAEIAKEMAKIKKLDIPIYTAFKNTAASGGYYIS 156
Query: 171 CAAREIIAEPLSEVGSIGVIYVHFNAEEYYKMNGIEVEVFKTGPYKDMGADWRGLTPEER 230
+ +I A + GSIGVI N + G+ +K+G KDM + + EE
Sbjct: 157 AGSDKIFATEETTTGSIGVIISGLNYSGLLEKLGVTDATYKSGALKDMMSPQHKPSEEEN 216
Query: 231 DIIKNEIQTYFNDFLEVVSEGRNMTINETKKFATGRAWFAKD-VNGTLVDKLGDFDVALK 289
+I+ + + ++ F+ VV++GRNM N K+ A GR + V LVD++G + AL
Sbjct: 217 KVIQEFVMSAYDRFVNVVAKGRNMDTNAVKELADGRIYDGNQAVENGLVDQIGYSEDALD 276
Query: 290 ELLKLIGAKKANVI 303
L K A VI
Sbjct: 277 SLKKEKKLTDATVI 290
>pir||T45386 endopeptidase IV [imported] - Mycobacterium leprae
>gi|2344854|emb|CAB11456.1| (Z98756) endopeptidase IV
[Mycobacterium leprae]
Length = 602
Score = 96.7 bits (237), Expect = 3e-19
Identities = 63/191 (32%), Positives = 94/191 (48%), Gaps = 2/191 (1%)
Query: 108 IIKAIREIRGNDTIKGVLLWIESPGGYVGPVREIYNELKKLGYL-KPIVAYVSGYAYSGA 166
I A+RE+ +D++ ++L + SPGG V I+ E+K+ KP+V + A SG
Sbjct: 342 IAAALREVAADDSVSAIVLRVNSPGGSVTASETIWREVKRARDRGKPVVVSMGAVAASGG 401
Query: 167 YYIACAAREIIAEPLSEVGSIGVIYVHFNAEEYYKMNGIEVEVFKTGPYKDMGADWRGLT 226
YY++ A EI+A P + GSIGVI + G+ + +T D + T
Sbjct: 402 YYVSVGADEIVANPGTITGSIGVITGKLVIRDLKGRLGVGSDTVRTNANADAWSANVPFT 461
Query: 227 PEERDIIKNEIQTYFNDFLEVVSEGRNMTINETKKFATGRAWFAKD-VNGTLVDKLGDFD 285
PE+ + E + DFLE V+EGR MT + A GR W D + LVD+LG
Sbjct: 462 PEQHTHREAEADLCYADFLERVAEGRGMTTDAVDDVARGRIWTGADALERGLVDELGGLV 521
Query: 286 VALKELLKLIG 296
A++ L G
Sbjct: 522 TAVRRAKVLAG 532
>sp|P45243|SPPA_HAEIN PROTEASE IV (ENDOPEPTIDASE IV) (SIGNAL PEPTIDE PEPTIDASE)
>gi|1075178|pir||F64128 proteinase IV homolog -
Haemophilus influenzae (strain Rd KW20)
>gi|1574383|gb|AAC23191.1| (U32829) protease IV (sppA)
[Haemophilus influenzae Rd]
Length = 615
Score = 95.6 bits (234), Expect = 7e-19
Identities = 70/234 (29%), Positives = 119/234 (49%), Gaps = 13/234 (5%)
Query: 79 LESENVTTANATIAVLPII--GPIDSSSALG--IIKAIREIRGNDTIKGVLLWIESPGGY 134
LE NV A + V I G D +A G I + +R+ ++++K V+L + SPGG
Sbjct: 315 LEHYNVPNKIAVVNVEGTIIDGESDEENAGGDTIARILRKAHDDNSVKAVILRVNSPGGS 374
Query: 135 VGP---VREIYNELKKLGYLKPIVAYVSGYAYSGAYYIACAAREIIAEPLSEVGSIGVIY 191
+R+ L+K+G KP++ + A SG Y+I+ A IIA+ + GSIG+
Sbjct: 375 AFASEIIRQETENLQKIG--KPVIVSMGAMAASGGYWISSTADYIIADSNTITGSIGIFT 432
Query: 192 VHFNAEEYYKMNGIEVEVFKTGPYKDMGADWRGLTPEERDIIKNEIQTYFNDFLEVVSEG 251
+ E K G+ + T + A + L +DI + EI+ ++ FLE+VS+G
Sbjct: 433 MFPTFENSIKKIGVHADGVSTTELANTSA-FSPLAKPVQDIYQTEIEHGYDRFLEIVSKG 491
Query: 252 RNMTINETKKFATGRAWFAKDV--NGTLVDKLGDFDVALKELLKLIGAKKANVI 303
R ++ + K A G+ W D NG LVD++G F+ A+ + +L+ ++ +
Sbjct: 492 RQLSKTQVDKLAQGQVWLGSDAFQNG-LVDEIGSFNEAVNKAEQLVNQRQDTAV 544
>sp|P73689|SPPA_SYNY3 PROTEASE IV HOMOLOG (ENDOPEPTIDASE IV) (SIGNAL PEPTIDE PEPTIDASE)
>gi|7435908|pir||S77177 proteinase IV (EC 3.4.-.-) 2 -
Synechocystis sp. (strain PCC 6803)
>gi|1652816|dbj|BAA17735.1| (D90908) protease IV
[Synechocystis sp.]
Length = 610
Score = 95.6 bits (234), Expect = 7e-19
Identities = 58/178 (32%), Positives = 87/178 (48%), Gaps = 1/178 (0%)
Query: 112 IREIRGNDTIKGVLLWIESPGGYVGPVREIYNELKKLGYLKPIVAYVSGYAYSGAYYIAC 171
+R IR +D IK V+L I SPGG I+ E++ L KP++ + A SG Y+IA
Sbjct: 349 LRTIRQDDDIKAVVLRINSPGGSASAADIIWREVELLQAQKPVIISMGNVAASGGYWIAT 408
Query: 172 AAREIIAEPLSEVGSIGVIYVHFNAEEYYKMNGIEVEVFKTGPYKDMGADWRGLTPEERD 231
A +I+A+P + GSIGV + FN E G+ + TG ++G+ + T E
Sbjct: 409 AGEKIVAQPNTVTGSIGVFSILFNVENLGDRLGLNWDEVATGELANVGSSIKPKTELELA 468
Query: 232 IIKNEIQTYFNDFLEVVSEGRNMTINETKKFATGRAWFAKDVNGT-LVDKLGDFDVAL 288
I + + + FL+ V RN++ A GR W LVD+LG A+
Sbjct: 469 IFQRSVDQVYEIFLDKVGRARNLSPTALDSVAQGRVWTGLAAQKVGLVDQLGGLQTAV 526
>sp|P08395|SPPA_ECOLI PROTEASE IV (ENDOPEPTIDASE IV) (SIGNAL PEPTIDE PEPTIDASE)
>gi|147868|gb|AAA24648.1| (M13359) protease IV
[Escherichia coli]
Length = 618
Score = 94.8 bits (232), Expect = 1e-18
Identities = 61/190 (32%), Positives = 94/190 (49%), Gaps = 3/190 (1%)
Query: 112 IREIRGNDTIKGVLLWIESPGGYVGPVREIYNELKKLGYL-KPIVAYVSGYAYSGAYYIA 170
IR+ R + +K ++L + SPGG V I EL KP+V + G A SG Y+I+
Sbjct: 356 IRDARLDPKVKAIVLRVNSPGGTVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWIS 415
Query: 171 CAAREIIAEPLSEVGSIGVIYVHFNAEEYYKMNGIEVEVFKTGPYKDMGADWRGLTPEER 230
A I+A P + GSIG+ V E G+ + T P D+ R L PE +
Sbjct: 416 TPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSIT-RALPPEAQ 474
Query: 231 DIIKNEIQTYFNDFLEVVSEGRNMTINETKKFATGRAWFAKDVNGT-LVDKLGDFDVALK 289
+++ I+ + F+ +V++ R+ T + K A G W +D LVD LGDFD A+
Sbjct: 475 LMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVA 534
Query: 290 ELLKLIGAKK 299
+ +L K+
Sbjct: 535 KAAELAKVKQ 544
>pir||PRECT4 proteinase IV (EC 3.4.-.-) - Escherichia coli
>gi|1742877|dbj|BAA15557.1| (D90820) Proteinase IV (EC
3.4.-.-) [Escherichia coli] >gi|1788064|gb|AAC74836.1|
(AE000271) protease IV, a signal peptide peptidase
[Escherichia coli K12]
Length = 618
Score = 94.8 bits (232), Expect = 1e-18
Identities = 61/190 (32%), Positives = 94/190 (49%), Gaps = 3/190 (1%)
Query: 112 IREIRGNDTIKGVLLWIESPGGYVGPVREIYNELKKLGYL-KPIVAYVSGYAYSGAYYIA 170
IR+ R + +K ++L + SPGG V I EL KP+V + G A SG Y+I+
Sbjct: 356 IRDARLDPKVKAIVLRVNSPGGSVTASEVIRAELAAARAAGKPVVVSMGGMAASGGYWIS 415
Query: 171 CAAREIIAEPLSEVGSIGVIYVHFNAEEYYKMNGIEVEVFKTGPYKDMGADWRGLTPEER 230
A I+A P + GSIG+ V E G+ + T P D+ R L PE +
Sbjct: 416 TPANYIVANPSTLTGSIGIFGVITTVENSLDSIGVHTDGVSTSPLADVSIT-RALPPEAQ 474
Query: 231 DIIKNEIQTYFNDFLEVVSEGRNMTINETKKFATGRAWFAKDVNGT-LVDKLGDFDVALK 289
+++ I+ + F+ +V++ R+ T + K A G W +D LVD LGDFD A+
Sbjct: 475 LMMQLSIENGYKRFITLVADARHSTPEQIDKIAQGHVWTGQDAKANGLVDSLGDFDDAVA 534
Query: 290 ELLKLIGAKK 299
+ +L K+
Sbjct: 535 KAAELAKVKQ 544
>gb|AAG34712.1|AF320001_5 (AF320001) putative protease [Acinetobacter sp. BD413]
Length = 338
Score = 91.7 bits (224), Expect = 1e-17
Identities = 76/242 (31%), Positives = 114/242 (46%), Gaps = 15/242 (6%)
Query: 81 SENVTTANATIAVLPIIGPIDSSS----ALGIIKAIREIRGNDTIKGVLLWIESPGGYVG 136
S +++ A +AV+ IIG IDSS+ + KA+ K V L I SPGG
Sbjct: 72 SGGTSSSTAHLAVVNIIGTIDSSNQSVNSEDTNKALERAFEAKNSKAVALNINSPGGSPV 131
Query: 137 PVREIYNE---LKKLGYLKPIVAYVSGYAYSGAYYIACAAREIIAEPLSEVGSIGVIYVH 193
EI+ E LKK K + A + SGAYYIA AA EII P S VGSIGVI +
Sbjct: 132 QSDEIWQEIRYLKKQHPDKKVYAVIGDMGASGAYYIASAADEIIVNPSSLVGSIGVIMPN 191
Query: 194 FNAEEYYKMNGIEVEVFKTGPYKDMGADWRGLTPEERDIIKNEIQTYFNDFLEVVSEGRN 253
+ + GIE +G KD+ + + + P +R+ I++ + F+ V EGR
Sbjct: 192 YGITGLAQKLGIEDRTLTSGSNKDILSMTKPVNPAQREHIQSVLDNVHAHFINAVKEGRG 251
Query: 254 MTI-NETKKFATGRAWFAKD-VNGTLVDKLGDFDVALKELLKLIGAKKANVIILNMEDNE 311
+ + +G W + + + D+ G+ D ++EL K N + +E +
Sbjct: 252 TRLKSNDPAIFSGLFWTGEQAIQLGVADRTGNLDTLMREL------KVENKVNYTIERSP 305
Query: 312 FE 313
FE
Sbjct: 306 FE 307
>pir||E83273 probable peptidase PA2973 [imported] - Pseudomonas aeruginosa
(strain PAO1) >gi|9949072|gb|AAG06361.1|AE004723_5
(AE004723) probable peptidase [Pseudomonas aeruginosa]
Length = 326
Score = 88.2 bits (215), Expect = 1e-16
Identities = 64/211 (30%), Positives = 104/211 (48%), Gaps = 6/211 (2%)
Query: 89 ATIAVLPIIGPIDSSSALGIIKAIREIRGNDTIKGVLLWIESPGGYVGPVREIYNELKKL 148
A I V +I + +SA I+ A+R ++ KG++L I SPGG IY+E+++L
Sbjct: 75 ALIEVKGMIADDEPASADNIVTALRAAFKDEGTKGIVLRINSPGGSPVQSGYIYDEIRRL 134
Query: 149 GYLKP---IVAYVSGYAYSGAYYIACAAREIIAEPLSEVGSIGVIYVHFNAEEYYKMNGI 205
P + A +S SGAYYIA AA +I A+ S VGSIGV F + G+
Sbjct: 135 RGEHPNVKVYAVISDLGASGAYYIASAADQIYADKASLVGSIGVTAASFGFVGTMEKLGV 194
Query: 206 EVEVFKTGPYKDMGADWRGLTPEERDIIKNEIQTYFNDFLEVVSEGR--NMTINETKKFA 263
E V+ +G +K ++ PEE + + T F++ V +GR + + +
Sbjct: 195 ERRVYTSGEHKSFLDPFQPQKPEETQFWQQVLDTTHKQFIDSVKKGRGDRLKVEGHPELF 254
Query: 264 TGRAWFAKD-VNGTLVDKLGDFDVALKELLK 293
+G W + + L+D LG+ +E++K
Sbjct: 255 SGLVWSGEQALQLGLIDGLGNASYVAREVVK 285
>sp|Q48513|PFAP_LEPBO PUTATIVE PEPTIDASE PFAP PRECURSOR (PERIPLASMIC FLAGELLA-ASSOCIATED
PROTEIN) (PF-ASSOCIATED PEPTIDASE)
>gi|440320|gb|AAA79884.1| (L27482) hypothetical
peptidase [Leptospira borgpetersenii]
Length = 204
Score = 83.5 bits (203), Expect = 3e-15
Identities = 50/149 (33%), Positives = 83/149 (55%), Gaps = 2/149 (1%)
Query: 147 KLGYLKPIVAYVSGYAYSGAYYIACAAREIIAEPLSEVGSIGVIYVHFNAEEYYKMNGIE 206
+L + IV + A SG YYIA +A +I A + GSIGV+ + + G++
Sbjct: 2 RLRKTRKIVVSMKDMAASGGYYIASSADKIFALSGTITGSIGVLQ-WLRYQRAFGSLGVK 60
Query: 207 VEVFKTGPYKDMGADWRGLTPEERDIIKNEIQTYFNDFLEVVSEGRNMTINETKKFATGR 266
+ +K G YKD + +R TPEE ++I+ + +N+F++ V++GRN T+ + A GR
Sbjct: 61 MRTYKEGKYKDSLSLFRDSTPEEDEMIQKMLSDTYNEFVQDVAKGRNQTVKSVQNLAEGR 120
Query: 267 AWFAKDV-NGTLVDKLGDFDVALKELLKL 294
+ +D LVD++G AL+EL +L
Sbjct: 121 IYSGQDAFRNKLVDEIGGRKEALEELSRL 149
>pir||D82527 proteinase IV XF2685 [imported] - Xylella fastidiosa (strain 9a5c)
>gi|9107924|gb|AAF85482.1|AE004074_6 (AE004074) protease
IV [Xylella fastidiosa]
Length = 633
Score = 81.9 bits (199), Expect = 9e-15
Identities = 68/229 (29%), Positives = 108/229 (46%), Gaps = 14/229 (6%)
Query: 77 SLLESENVTTANAT-IAVLPIIGPIDSSSA-LGIIKA------IREIRGNDTIKGVLLWI 128
SLL++++V ++ IAV+ G I G I +R+ R D +K V+L +
Sbjct: 321 SLLDAQSVPLGTSSQIAVVVAAGEIKGGDQPAGYIGGESTSMLLRKARDEDAVKAVVLRV 380
Query: 129 ESPGGYVGPVREIYNE---LKKLGYLKPIVAYVSGYAYSGAYYIACAAREIIAEPLSEVG 185
SPGG V +I E L+K+G KP+V + A SG Y+I+ A I A+P + G
Sbjct: 381 NSPGGEVFASEQIRREVVALRKVG--KPVVVSMGDMAASGGYWISMDADRIYADPSTISG 438
Query: 186 SIGVIYVHFNAEEYYKMNGIEVEVFKTGPYKDMGADWRGLTPEERDIIKNEIQTYFNDFL 245
SIG+ + N G+ + T + R L P+ +++N I + DF
Sbjct: 439 SIGIFGLMPNITRTLDKMGVHTDGVGTTRFAGALDITRTLDPQVGQMLQNVIDKGYADFT 498
Query: 246 EVVSEGRNMTINETKKFATGRAWF-AKDVNGTLVDKLGDFDVALKELLK 293
V++ R+ ++ E A GR W A+ LVD+LG A+ + K
Sbjct: 499 SKVAQARHRSVQEIDSIARGRVWSGAQAKERGLVDELGGVREAITDAAK 547
>gb|AAG19125.1| (AE005010) proteinase IV homolog; Edp [Halobacterium sp. NRC-1]
Length = 300
Score = 80.8 bits (196), Expect = 2e-14
Identities = 67/217 (30%), Positives = 100/217 (45%), Gaps = 23/217 (10%)
Query: 79 LESENVTTANATIAVLPIIGPIDSSSALGIIKAIREIRGNDTIKGVLLWIESPGGYVGPV 138
L+S + + ++AV+ I I + + K +R IRGND+I V+L + SPGG V
Sbjct: 34 LQSGSDSGPENSVAVVNIESAITGGTGDAVAKELRSIRGNDSIDAVVLRVSSPGGAVSGS 93
Query: 139 REIYNELKKLGYLKPIVAYVSGYAYSGAYYIACAAREIIAEPLSEVGSIGVIYVHFNAEE 198
Y +K+L KP+V V G A SG YY +I P S VGS+GVI
Sbjct: 94 EVQYRAVKRLAQEKPVVTSVRGPAASGGYYTIAPTDKIYVTPSSLVGSVGVI------SS 147
Query: 199 YYKMNGIEVEVFKTGPYKDMGADWRGLTPEERDIIKNEIQTYFNDFLEVV--SEGRNMTI 256
+ NG+ +K+ P K T D + T+ FL+VV G ++T+
Sbjct: 148 VSENNGVPSR-WKSAPDKG--------TTGPADKARARAATFRQSFLDVVMNERGDDLTV 198
Query: 257 NETKKFATGRAWF---AKDVNGTLVDKLGDFDVALKE 290
+ + GRA K V L D++G D A+ +
Sbjct: 199 D---RETIGRAQIYAGNKAVEIGLADEIGGLDAAIAD 232
>sp|P24213|SOHB_ECOLI POSSIBLE PROTEASE SOHB >gi|7466853|pir||C64875 probable serine
proteinase (EC 3.4.-.-) sohB - Escherichia coli
>gi|1742067|dbj|BAA14809.1| (D90764) Probable microbial
serine proteinase (EC 3.4.21.-), periplasmic
[Escherichia coli] >gi|1742083|dbj|BAA14824.1| (D90765)
Probable microbial serine proteinase (EC 3.4.21.-),
periplasmic [Escherichia coli]
>gi|1787527|gb|AAC74354.1| (AE000225) putative protease
[Escherichia coli K12]
Length = 349
Score = 80.0 bits (194), Expect = 4e-14
Identities = 83/319 (26%), Positives = 146/319 (45%), Gaps = 29/319 (9%)
Query: 3 AEVWKYLSLILTLVLSLSIVSNALLYM------QMGEL------EKYKEMPPSVNETTTI 50
+E +L+ I+T+VL+++ ++ ++ + Q GEL E+YKEM E
Sbjct: 5 SEYGLFLAKIVTVVLAIAAIAAIIVNVAQRNKRQRGELRVNNLSEQYKEMK---EELAAA 61
Query: 51 VSPTQENITILKLQIERLKREVSFLRSLLE-SENVTTANATIAVLPIIGPIDSSSALGII 109
+ + + K Q ++ K+E ++ + E T + + VL G +D+ +
Sbjct: 62 LMDSHQQKQWHKAQKKKHKQEAKAAKAKAKLGEVATDSKPRVWVLDFKGSMDAHEVNSLR 121
Query: 110 KAIREIRGNDTIKG-VLLWIESPGGYVGPVREIYNELKKLGYLK-PIVAYVSGYAYSGAY 167
+ I + + V+L +ESPGG V ++L++L P+ V A SG Y
Sbjct: 122 EEITAVLAAFKPQDQVVLRLESPGGMVHGYGLAASQLQRLRDKNIPLTVTVDKVAASGGY 181
Query: 168 YIACAAREIIAEPLSEVGSIGVIYVHFNAEEYYKMNGIEVEVFKTGPYKDMGADWRGLTP 227
+AC A +I++ P + VGSIGV+ N + K I++E+ G YK T
Sbjct: 182 MMACVADKIVSAPFAIVGSIGVVAQMPNFNRFLKSKDIDIELHTAGQYKRTLTLLGENTE 241
Query: 228 EERDIIK---NEIQTYFNDFLEVVSEGRNMTINETKKFATGRAWFAKD-VNGTLVDKLGD 283
E R+ + NE F DF++ R + ++ ATG W+ + V LVD++
Sbjct: 242 EGREKFREELNETHQLFKDFVK-----RMRPSLDIEQVATGEHWYGQQAVEKGLVDEINT 296
Query: 284 FDVALKELLKLIGAKKANV 302
D + L++ G + NV
Sbjct: 297 SDEVILSLME--GREVVNV 313
>emb|CAC11222.1| (AL445063) protease (pspA) related protein [Thermoplasma
acidophilum]
Length = 230
Score = 79.6 bits (193), Expect = 5e-14
Identities = 45/180 (25%), Positives = 94/180 (52%), Gaps = 1/180 (0%)
Query: 120 TIKGVLLWIESPGGYVGPVREIYNELKKLGYLKPIVAYVSGYAYSGAYYIACAAREIIAE 179
++ G++L S GG + ++ ++K+ KP+ +++ G SGAY+I+ + +I +
Sbjct: 32 SVAGLVLVFNSGGGDAVASQLMFEMIRKIRKKKPVYSFIQGICASGAYWISAGSSKIYSL 91
Query: 180 PLSEVGSIGVIYVHFNAEEYYKMNGIEVEVFKTGPYKDMGADWRGLTPEERDIIKNEIQT 239
S +GSIGVI + + G+E++++K G YKDM + +R + EE + +
Sbjct: 92 DTSLIGSIGVISMIPYIKPLLDKIGVEMKIYKVGKYKDMLSSYREPSDEENEHYMRVLND 151
Query: 240 YFNDFLEVVSEGRNMTINETKKFATGRAWF-AKDVNGTLVDKLGDFDVALKELLKLIGAK 298
+ F + V RN+ ++ + A G+ + + + L+D +G D + ++ + +G K
Sbjct: 152 VYRKFRDSVMTERNIPEDKMEDIAQGQIFSPSMAMENRLIDGIGTMDSMMDDMYRQLGRK 211
>pir||A38115 probable microbial serine proteinase (EC 3.4.21.-), periplasmic -
Escherichia coli >gi|290470|gb|AAA24639.1| (M73320) sohB
[Escherichia coli]
Length = 349
Score = 78.8 bits (191), Expect = 8e-14
Identities = 83/319 (26%), Positives = 146/319 (45%), Gaps = 29/319 (9%)
Query: 3 AEVWKYLSLILTLVLSLSIVSNALLYM------QMGEL------EKYKEMPPSVNETTTI 50
+E +L+ I+T+VL+++ ++ ++ + Q GEL E+YKEM E
Sbjct: 5 SEYGLFLAKIVTVVLAIAAIAAIIVNVAQRNKRQRGELRVNNLSEQYKEMK---EELAAA 61
Query: 51 VSPTQENITILKLQIERLKREVSFLRSLLE-SENVTTANATIAVLPIIGPIDSSSALGII 109
+ + + K Q ++ K+E ++ + E T + + VL G +D+ +
Sbjct: 62 LMDSHQQKQWHKAQKKKHKQEAKRAKAKRKLGEVATDSKPRVWVLDFKGSMDAHEVNSLR 121
Query: 110 KAIREIRGNDTIKG-VLLWIESPGGYVGPVREIYNELKKLGYLK-PIVAYVSGYAYSGAY 167
+ I + + V+L +ESPGG V ++L++L P+ V A SG Y
Sbjct: 122 EEITAVLAAFKPQDQVVLRLESPGGMVHGYGLAASQLQRLRDKNIPLTVTVDKVAASGGY 181
Query: 168 YIACAAREIIAEPLSEVGSIGVIYVHFNAEEYYKMNGIEVEVFKTGPYKDMGADWRGLTP 227
+AC A +I++ P + VGSIGV+ N + K I++E+ G YK T
Sbjct: 182 MMACVADKIVSAPFAIVGSIGVVAQMPNFNRFLKSKDIDIELHTAGQYKRTLTLLGENTE 241
Query: 228 EERDIIK---NEIQTYFNDFLEVVSEGRNMTINETKKFATGRAWFAKD-VNGTLVDKLGD 283
E R+ + NE F DF++ R + ++ ATG W+ + V LVD++
Sbjct: 242 EGREKFREELNETHQLFKDFVK-----RMRPSLDIEQVATGEHWYGQQAVEKGLVDEINA 296
Query: 284 FDVALKELLKLIGAKKANV 302
D + L++ G + NV
Sbjct: 297 SDEVILSLME--GREVVNV 313
>pir||F75315 endopeptidase IV-related protein - Deinococcus radiodurans (strain
R1) >gi|6459892|gb|AAF11646.1|AE002045_6 (AE002045)
endopeptidase IV-related protein [Deinococcus
radiodurans]
Length = 556
Score = 78.0 bits (189), Expect = 1e-13
Identities = 60/206 (29%), Positives = 103/206 (49%), Gaps = 9/206 (4%)
Query: 94 LPIIG-PIDSSSALGIIKAIREIRGNDTIKGVLLWIESPGGYVGPVREIYNELKKLGYLK 152
LP++G P+ S ++ A++ + + K +++++ S GG ++ E+ K
Sbjct: 303 LPLLGGPMAGSDT--VVAALKHAKEDKATKAIVVYVNSGGGSALASDLMWREIATSD--K 358
Query: 153 PIVAYVSGYAYSGAYYIACAAREIIAEPLSEVGSIGVIYVHFNAEEYYKMNGIEVEVFKT 212
P+V + YA SG YY+A A +I+A P + GSIGV+ +E+ G++ E +
Sbjct: 359 PVVVVMGEYAASGGYYLATHADKIVASPYTLTGSIGVVSGKPVMQEFNGRQGLKPE--RV 416
Query: 213 GPYKD-MGADWRGLTPEERDIIKNEIQTYFNDFLEVVSEGRNMTINETKKFATGRAWFAK 271
G + M + R T EER I+ I ++ F V+EGR+++ + GR W
Sbjct: 417 GRDRALMYSPSRPYTDEERAHIEKGIGEVYDRFTSRVAEGRDLSQERVNEIGRGRIWSGY 476
Query: 272 D-VNGTLVDKLGDFDVALKELLKLIG 296
D + LVD+LGD L+ +L G
Sbjct: 477 DALELGLVDELGDLHRGLELARELAG 502
>sp|P45315|SOHB_HAEIN POSSIBLE PROTEASE SOHB >gi|1075174|pir||D64136 probable serine
proteinase (EC 3.4.-.-) sohB - Haemophilus influenzae
(strain Rd KW20) >gi|1574534|gb|AAC23328.1| (U32841)
protease, putative (sohB) [Haemophilus influenzae Rd]
Length = 353
Score = 77.6 bits (188), Expect = 2e-13
Identities = 85/307 (27%), Positives = 136/307 (43%), Gaps = 33/307 (10%)
Query: 9 LSLILTLVLSLSIVSNALLYMQ-----MGELEKYKEMPPSVNETTTIV--------SPTQ 55
L ++ L+L L++V + Y Q +GELE K++ NE ++ Q
Sbjct: 14 LEILTILLLILAVVGLIISYRQHNKSKVGELE-IKDLSEEFNEQVRLLRDFNLSEEEQKQ 72
Query: 56 ENITILKLQIERLKREVSFLRS--LLESENVTTANATIAVLPIIGPIDSSSALGI---IK 110
K + + K+ L+ LE E A + VL G I +S + I
Sbjct: 73 RTKAEKKAEKQNAKKRKEKLKKGETLEDEK----KACVYVLDFCGDISASETTALREEIS 128
Query: 111 AIREIRGNDTIKGVLLWIESPGGYV---GPVREIYNELKKLGYLKPIVAYVSGYAYSGAY 167
AI + ++ VLL +ESPGG V G + LK+ G +K VA V A SG Y
Sbjct: 129 AILNVAKSED--EVLLRLESPGGIVHNYGFAASQLSRLKQKG-IKLTVA-VDKVAASGGY 184
Query: 168 YIACAAREIIAEPLSEVGSIGVIYVHFNAEEYYKMNGIEVEVFKTGPYKDMGADWRGLTP 227
+AC A +I++ P + +GSIGV+ N K + ++V+V G +K T
Sbjct: 185 MMACVADKIVSAPFAVIGSIGVVAQIPNVHRLLKKHDVDVDVMTAGEFKRTVTVLGENTE 244
Query: 228 EERDIIKNEIQTYFNDFLEVVSEGRNMTINETKKFATGRAWFAKD-VNGTLVDKLGDFDV 286
+ + + E++ F + VS+ R + K ATG WF + + LVD++ D
Sbjct: 245 KGKQKFQQELEETHKLFKQFVSQNRPCL--DIDKIATGEHWFGQQAIALQLVDEISTSDD 302
Query: 287 ALKELLK 293
+ E +K
Sbjct: 303 LILEKMK 309
>pir||F71255 probable proteinase IV (sppA) - syphilis spirochete
>gi|3323323|gb|AAC26585.1| (AE001267) protease IV (sppA)
[Treponema pallidum]
Length = 598
Score = 77.6 bits (188), Expect = 2e-13
Identities = 70/228 (30%), Positives = 113/228 (48%), Gaps = 15/228 (6%)
Query: 91 IAVLPIIGPIDS--SSALG-----IIKAIREIRGNDT-IKGVLLWIESPGGYVGPVREIY 142
+ ++ + GPI + + LG + A+ ++ +D IK V+L I+S GG V I
Sbjct: 319 VGIIHLAGPIAAHRDTELGGTISDEVSALLDVAMSDPDIKAVVLRIDSGGGEVFASERIR 378
Query: 143 NEL---KKLGYLKPIVAYVSGYAYSGAYYIACAAREIIAEPLSEVGSIGVIYVHFNAEEY 199
L K+ G KP++ + A SGAY++A AA I A P + GSIGV+ V E +
Sbjct: 379 RALARAKRRGK-KPVIVSMGAIAASGAYWVASAADYIFASPYTITGSIGVLSVLPTFETF 437
Query: 200 Y-KMNGIEVEVFKTGPYKDMGADWRGLTPEERDIIKNEIQTYFNDFLEVVSEGRNMTINE 258
+ GI V+ + + R T E+ ++ ++ + FL VVS GRN+T++
Sbjct: 438 LERYAGITVDSVQVHGVRQPSL-LRSGTAEDTARMQLDVMATYRTFLSVVSAGRNLTLDR 496
Query: 259 TKKFATGRAWFAKD-VNGTLVDKLGDFDVALKELLKLIGAKKANVIIL 305
A GR + +D V+ LVD LG D A+ K ++ +V +L
Sbjct: 497 VAAVAEGRIYAGEDAVSLGLVDALGGLDEAVAHAAKESHCRQYSVRVL 544
>dbj|BAA89626.1| (AB036665) similar to GPC of lambda [bacteriophage WO]
Length = 353
Score = 76.5 bits (185), Expect = 4e-13
Identities = 50/177 (28%), Positives = 86/177 (48%)
Query: 108 IIKAIREIRGNDTIKGVLLWIESPGGYVGPVREIYNELKKLGYLKPIVAYVSGYAYSGAY 167
I + I E N I+ +LL I+SPGG V + ++ + + + K I+A + AYS AY
Sbjct: 75 IQEEIEEALSNKDIETILLDIDSPGGEVNGIFDLADFIYESRAKKRIIAIANDDAYSAAY 134
Query: 168 YIACAAREIIAEPLSEVGSIGVIYVHFNAEEYYKMNGIEVEVFKTGPYKDMGADWRGLTP 227
IA +A ++ S VGSIGVI H + + + GI+ G K+ +T
Sbjct: 135 AIASSAEKVFVSRTSGVGSIGVIASHIDQSRFDEKQGIKYTTIFAGSRKNDLNPHEPMTS 194
Query: 228 EERDIIKNEIQTYFNDFLEVVSEGRNMTINETKKFATGRAWFAKDVNGTLVDKLGDF 284
E + ++ E+ + FL++++ R ++I + + G + K V L D + F
Sbjct: 195 ESLESLQKEVGRLYEMFLQLIARNRGLSIEKIRSTEAGLYFGEKAVEIGLADGVTTF 251
>pir||F82247 sohB protein, peptidase U7 family VC1060 [imported] - Vibrio
cholerae (group O1 strain N16961)
>gi|9655526|gb|AAF94219.1| (AE004187) sohB protein,
peptidase U7 family [Vibrio cholerae]
Length = 356
Score = 74.5 bits (180), Expect = 2e-12
Identities = 71/248 (28%), Positives = 106/248 (42%), Gaps = 13/248 (5%)
Query: 62 KLQIERLKREVSFLRSLLESENVTTANATIAVLPIIGPIDSSSALGIIKAIREIRG-NDT 120
K + E+ RE S ++ E E + + + VL G ID+ + + + I
Sbjct: 81 KEKAEQKSREKSLKQAAKEGELESKRDPHLFVLDFHGSIDAKEVASLREEVSAILAVAQA 140
Query: 121 IKGVLLWIESPGGYV---GPVREIYNELKKLGYLKPIVAYVSGYAYSGAYYIACAAREII 177
VLL +E+ GG V G + LK G P+ V A SG Y +AC A +I+
Sbjct: 141 GDEVLLRLETGGGMVHGYGLASSQLDRLKAAGL--PLTIAVDKVAASGGYMMACIADKIV 198
Query: 178 AEPLSEVGSIGVIYVHFNAEEYYKMNGIEVEVFKTGPYKDMGADWRGLTPEERDIIKNEI 237
+ P + VGSIGV+ N + K N IE E G YK + T + R+ K E+
Sbjct: 199 SAPFAIVGSIGVVAQLPNFHKLLKKNDIEFEQLTAGEYKRTLTMFGENTDKAREKFKQEL 258
Query: 238 QTYFNDFLEVVSEGRNMTINETKKFATGRAWFAKDVNGTLVDKLGDFDVALKELLKLIGA 297
+ F + + E R + K ATG WF GT LG D ++ A
Sbjct: 259 EETHQLFKDFIREHRPAL--DLDKVATGEHWF-----GTQAKALGLVDEIQTSDDLIVAA 311
Query: 298 KKANVIIL 305
K+ ++L
Sbjct: 312 CKSKTVLL 319
>pir||G72058 proteinase IV, probable CP0134 [imported] - Chlamydophila
pneumoniae (strains CWL029 and AR39)
>gi|4376909|gb|AAD18752.1| (AE001645) Protease
[Chlamydophila pneumoniae CWL029]
>gi|7189070|gb|AAF38017.1| (AE002175) protease IV,
putative [Chlamydophila pneumoniae AR39]
>gi|8978985|dbj|BAA98820.1| (AP002547) protease
[Chlamydophila pneumoniae J138]
Length = 333
Score = 73.7 bits (178), Expect = 3e-12
Identities = 59/217 (27%), Positives = 100/217 (45%), Gaps = 20/217 (9%)
Query: 108 IIKAIREIRGNDTIKGVLLWIESPGGYVGPVREIYNELKKLGYLK--PIVAYVSGYAYSG 165
I++ + D +KG+++ ++ PGG V + IY+ L+ K PI YV+G SG
Sbjct: 86 ILEGFEKAPLKDRVKGIVIDMDCPGGEVFEIDRIYSMLRFWKERKGFPIYIYVNGLCASG 145
Query: 166 AYYIACAAREIIAEPLSEVGSIGV-IYVHFNAEEYYKMNGIEVEVFKTGPYKDMGADWRG 224
YY++CAA +I A S +GSIGV FN +E G+E ++ G K +
Sbjct: 146 GYYVSCAATKIYATSSSLIGSIGVRSGPFFNVKEGLNRYGVESDLLTAGKDKAPMNPYTP 205
Query: 225 LTPEERDIIKNEIQTYFNDFLEVVSEGRNMTINETKKFATGRAWFAKDVNGTLVDKLGDF 284
T +R+ + + + F+++V++ R + E G F+ + + G
Sbjct: 206 WTSHDREERQATLDFLYGQFVDIVTQNRPLLTKEKLVHTLGARIFSPE----KAKQEGYI 261
Query: 285 DVALKELLKLIGAKKANVI-----ILNMEDNEFEIGT 316
DV +GA K V+ + +EDN IG+
Sbjct: 262 DV--------VGATKEQVLQDIVAVCKIEDNYRVIGS 290
>dbj|BAA89643.1| (AB036666) similar to minor capsid protein GPC of phage lambda
[Wolbachia sp. wKue]
Length = 350
Score = 73.4 bits (177), Expect = 4e-12
Identities = 49/173 (28%), Positives = 84/173 (48%)
Query: 112 IREIRGNDTIKGVLLWIESPGGYVGPVREIYNELKKLGYLKPIVAYVSGYAYSGAYYIAC 171
I E ++ ++ +LL I+SPGG V + ++ + + K I+A + AYS AY IA
Sbjct: 81 IEEALEDEKVEIILLDIDSPGGEVNGIFDLADFIYNARSKKRIIAIANDDAYSAAYAIAS 140
Query: 172 AAREIIAEPLSEVGSIGVIYVHFNAEEYYKMNGIEVEVFKTGPYKDMGADWRGLTPEERD 231
+A +I S VGSIGVI H + + + GI+ G K+ +T E +
Sbjct: 141 SAEKIFLTRTSGVGSIGVIASHIDQSGFDEKQGIKYSTIFAGSRKNDLNPHEPITSESLE 200
Query: 232 IIKNEIQTYFNDFLEVVSEGRNMTINETKKFATGRAWFAKDVNGTLVDKLGDF 284
+K+E+ + +E+++ R+++I K G + K V L D + F
Sbjct: 201 NLKSEVNRLYGMLVELIARNRSLSIEAIKSTEAGLYFGEKAVEIGLADGVTTF 253
>pir||F81005 probable proteinase, NMB2127 [imported] - Neisseria meningitidis
(group B strain MD58) >gi|7227382|gb|AAF42435.1|
(AE002560) protease, putative [Neisseria meningitidis
MC58]
Length = 328
Score = 70.2 bits (169), Expect = 3e-11
Identities = 53/182 (29%), Positives = 84/182 (46%), Gaps = 6/182 (3%)
Query: 118 NDTIKGVLLWIESPGGYVGPVREIYNELKKLGYLKP---IVAYVSGYAYSGAYYIACAAR 174
N K +++ SPGG + E+++L P + SG YYIA AA
Sbjct: 110 NPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYIAAAAD 169
Query: 175 EIIAEPLSEVGSIGVIYVHFNAEEYYKMNGIEVEVFKTGPYKDMGADWRGLTPEERDIIK 234
+I A+P S VGSIGVI F+A + G++ V G K MG + TPE+ I +
Sbjct: 170 KIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQSKIWE 229
Query: 235 NEIQTYFNDFLEVVSEGR--NMTINETKKFATGRAWFAKD-VNGTLVDKLGDFDVALKEL 291
+ +F++ V GR + + +GR + D + LVD LG+ +++
Sbjct: 230 EMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYSVARDV 289
Query: 292 LK 293
+K
Sbjct: 290 VK 291
>pir||H82025 probable proteinase NMA0305 [imported] - Neisseria meningitidis
(group A strain Z2491) >gi|7379062|emb|CAB83609.1|
(AL162752) putative protease [Neisseria meningitidis
Z2491]
Length = 328
Score = 70.2 bits (169), Expect = 3e-11
Identities = 53/182 (29%), Positives = 84/182 (46%), Gaps = 6/182 (3%)
Query: 118 NDTIKGVLLWIESPGGYVGPVREIYNELKKLGYLKP---IVAYVSGYAYSGAYYIACAAR 174
N K +++ SPGG + E+++L P + SG YYIA AA
Sbjct: 110 NPQAKAIVIRANSPGGSPVVSNTAFEEIRRLKAQHPGIPVYLVAEDMCASGCYYIAAAAD 169
Query: 175 EIIAEPLSEVGSIGVIYVHFNAEEYYKMNGIEVEVFKTGPYKDMGADWRGLTPEERDIIK 234
+I A+P S VGSIGVI F+A + G++ V G K MG + TPE+ I +
Sbjct: 170 KIYADPSSIVGSIGVIGSSFDATGLMEKIGVKRRVKIAGSNKGMGDPFSPETPEQSKIWE 229
Query: 235 NEIQTYFNDFLEVVSEGR--NMTINETKKFATGRAWFAKD-VNGTLVDKLGDFDVALKEL 291
+ +F++ V GR + + +GR + D + LVD LG+ +++
Sbjct: 230 EMLTGIHGEFIKAVKTGRGGRLKFRQYPDVFSGRVYTGADALKVGLVDGLGNIYSVARDV 289
Query: 292 LK 293
+K
Sbjct: 290 VK 291
>pir||B81803 probable secreted proteinase NMA1778 [imported] - Neisseria
meningitidis (group A strain Z2491)
>gi|7380420|emb|CAB85006.1| (AL162757) putative secreted
protease [Neisseria meningitidis Z2491]
Length = 350
Score = 69.9 bits (168), Expect = 4e-11
Identities = 49/164 (29%), Positives = 79/164 (47%), Gaps = 4/164 (2%)
Query: 124 VLLWIESPGGYVGPVREIYNELKKLGYLK-PIVAYVSGYAYSGAYYIACAAREIIAEPLS 182
VLL +ESPGG V ++L++L P+ V A SG Y +AC A +I++ P +
Sbjct: 139 VLLRLESPGGVVHGYGLAASQLRRLRERNIPLTVAVDKVAASGGYMMACVADKIVSAPFA 198
Query: 183 EVGSIGVIYVHFNAEEYYKMNGIEVEVFKTGPYKDMGADWRGLTPEERDIIKNEIQTYFN 242
VGS+GV+ N K + I+V+V G +K T + + + E++
Sbjct: 199 IVGSVGVVAEVPNIHRLLKKHDIDVDVMTAGEFKRTVTFMGENTEKGKQKFRQELEETHQ 258
Query: 243 DFLEVVSEGRNMTINETKKFATGRAWFAKDVNG-TLVDKLGDFD 285
F + VSE R + ++ ATG WF + L+D++ D
Sbjct: 259 LFKQFVSENRPQL--DIEEVATGEHWFGRQALALNLIDEISTSD 300
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.318 0.137 0.389
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 122549978
Number of Sequences: 2977
Number of extensions: 5120144
Number of successful extensions: 16154
Number of sequences better than 1.0e-10: 44
Number of HSP's better than 0.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 16084
Number of HSP's gapped (non-prelim): 51
length of query: 335
length of database: 189,106,746
effective HSP length: 57
effective length of query: 278
effective length of database: 154,992,987
effective search space: 43088050386
effective search space used: 43088050386
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 165 (68.7 bits)