BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1961 (PAB1961) DE:Hypothetical protein
         (157 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H75178 hypothetical protein PAB1961 - Pyrococcus abyssi (st...   332  2e-90
pir||B71035 hypothetical protein PH1570 - Pyrococcus horikoshii ...   238  3e-62

>pir||H75178 hypothetical protein PAB1961 - Pyrococcus abyssi (strain Orsay)
           >gi|5458021|emb|CAB49511.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 157
           
 Score =  332 bits (841), Expect = 2e-90
 Identities = 157/157 (100%), Positives = 157/157 (100%)

Query: 1   MEGLAMMCEEKLEVFENGFRDDKFNIEVTFYGEDGRKVLLALIYELYLPDYGSEYVYPFE 60
           MEGLAMMCEEKLEVFENGFRDDKFNIEVTFYGEDGRKVLLALIYELYLPDYGSEYVYPFE
Sbjct: 1   MEGLAMMCEEKLEVFENGFRDDKFNIEVTFYGEDGRKVLLALIYELYLPDYGSEYVYPFE 60

Query: 61  CAKEFWNVYMDPPNVEKEVPKLKPIKFVSESVKQKVREVLEGINPPVDVKIDEAEFYKTK 120
           CAKEFWNVYMDPPNVEKEVPKLKPIKFVSESVKQKVREVLEGINPPVDVKIDEAEFYKTK
Sbjct: 61  CAKEFWNVYMDPPNVEKEVPKLKPIKFVSESVKQKVREVLEGINPPVDVKIDEAEFYKTK 120

Query: 121 EGYLVIGKNFLLDPKGRLFIFNKPSIGEKILKYIWEW 157
           EGYLVIGKNFLLDPKGRLFIFNKPSIGEKILKYIWEW
Sbjct: 121 EGYLVIGKNFLLDPKGRLFIFNKPSIGEKILKYIWEW 157


>pir||B71035 hypothetical protein PH1570 - Pyrococcus horikoshii
           >gi|3257999|dbj|BAA30682.1| (AP000006) 152aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 152
           
 Score =  238 bits (601), Expect = 3e-62
 Identities = 104/152 (68%), Positives = 129/152 (84%)

Query: 6   MMCEEKLEVFENGFRDDKFNIEVTFYGEDGRKVLLALIYELYLPDYGSEYVYPFECAKEF 65
           M CEEKLEVFENGF+D+KFN+EV FYG D RKVLLA+IYELYLP+YG EYVYPFECAKEF
Sbjct: 1   MQCEEKLEVFENGFKDEKFNVEVKFYGNDARKVLLAMIYELYLPEYGREYVYPFECAKEF 60

Query: 66  WNVYMDPPNVEKEVPKLKPIKFVSESVKQKVREVLEGINPPVDVKIDEAEFYKTKEGYLV 125
           WN+Y++   ++ E  +LKPIKF SE V +K++E ++ I PP+++KI+EA+ YKTKEGYL 
Sbjct: 61  WNIYLEGEEIQDEEFQLKPIKFTSEQVIKKLQEEIKKIKPPLEIKIEEAKIYKTKEGYLA 120

Query: 126 IGKNFLLDPKGRLFIFNKPSIGEKILKYIWEW 157
           +G  F+LDP+GRLFIFNKPSI  KILKYIW+W
Sbjct: 121 VGNYFILDPRGRLFIFNKPSIANKILKYIWKW 152


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.320    0.144    0.438 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65701382
Number of Sequences: 2977
Number of extensions: 2820663
Number of successful extensions: 7239
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7237
Number of HSP's gapped (non-prelim): 2
length of query: 157
length of database: 189,106,746
effective HSP length: 49
effective length of query: 108
effective length of database: 159,780,883
effective search space: 17256335364
effective search space used: 17256335364
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 162 (67.5 bits)