BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1962 (PAB1962) DE:Membrane protein
         (343 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G75178 membrane protein PAB1962 - Pyrococcus abyssi (strain...   666  0.0
sp|O59276|YF71_PYRHO HYPOTHETICAL PROTEIN PH1571 >gi|7519197|pir...   562  e-159
pir||E75073 hypothetical protein PAB0658 - Pyrococcus abyssi (st...   194  1e-48
sp|O58728|YA00_PYRHO HYPOTHETICAL PROTEIN PH1000 >gi|7518929|pir...   192  6e-48
sp|O27279|YC11_METTH HYPOTHETICAL PROTEIN MTH1211 >gi|7482098|pi...   100  2e-20
sp|Q58578|YB77_METJA HYPOTHETICAL PROTEIN MJ1177 >gi|2128709|pir...    80  4e-14
gi|11499389 conserved hypothetical protein [Archaeoglobus fulgid...    76  4e-13
pir||C82300 conserved hypothetical protein VC0624 [imported] - V...    75  1e-12

>pir||G75178 membrane protein PAB1962 - Pyrococcus abyssi (strain Orsay)
           >gi|5458020|emb|CAB49510.1| (AJ248284) Membrane protein
           [Pyrococcus abyssi]
           Length = 343
           
 Score =  666 bits (1699), Expect = 0.0
 Identities = 343/343 (100%), Positives = 343/343 (100%)

Query: 1   MGVVRLEKEKIVWIALIAIIIFLVWETLKELISPIVFGIAATYIAYPFHIKLSRKLGKKL 60
           MGVVRLEKEKIVWIALIAIIIFLVWETLKELISPIVFGIAATYIAYPFHIKLSRKLGKKL
Sbjct: 1   MGVVRLEKEKIVWIALIAIIIFLVWETLKELISPIVFGIAATYIAYPFHIKLSRKLGKKL 60

Query: 61  SVLLLSALLAIFTILFFIGVTLWITDTLRNLYAYLNSFFSWLGSLNVPSFLSSIFDAMAT 120
           SVLLLSALLAIFTILFFIGVTLWITDTLRNLYAYLNSFFSWLGSLNVPSFLSSIFDAMAT
Sbjct: 61  SVLLLSALLAIFTILFFIGVTLWITDTLRNLYAYLNSFFSWLGSLNVPSFLSSIFDAMAT 120

Query: 121 SFPQKLRDILLQYTLSLPKLALQLIVFLAVFYATLSNSDFLAREIYELLPSSNRELGEKL 180
           SFPQKLRDILLQYTLSLPKLALQLIVFLAVFYATLSNSDFLAREIYELLPSSNRELGEKL
Sbjct: 121 SFPQKLRDILLQYTLSLPKLALQLIVFLAVFYATLSNSDFLAREIYELLPSSNRELGEKL 180

Query: 181 IEKVRDTVDAILKTWLFFSIIKGMFLTIGFYLFEISNVAGSIAAGVLCVILELLPVVGGW 240
           IEKVRDTVDAILKTWLFFSIIKGMFLTIGFYLFEISNVAGSIAAGVLCVILELLPVVGGW
Sbjct: 181 IEKVRDTVDAILKTWLFFSIIKGMFLTIGFYLFEISNVAGSIAAGVLCVILELLPVVGGW 240

Query: 241 IMWLAGAIILWKKSTLLALLFSIYGILTISPVPDYTLKSRFTKGRASVSSVVALVGIFGG 300
           IMWLAGAIILWKKSTLLALLFSIYGILTISPVPDYTLKSRFTKGRASVSSVVALVGIFGG
Sbjct: 241 IMWLAGAIILWKKSTLLALLFSIYGILTISPVPDYTLKSRFTKGRASVSSVVALVGIFGG 300

Query: 301 LIAFGAVGIILGPIAIGLLLALIDAWKEIKLKQPSKARHSQDA 343
           LIAFGAVGIILGPIAIGLLLALIDAWKEIKLKQPSKARHSQDA
Sbjct: 301 LIAFGAVGIILGPIAIGLLLALIDAWKEIKLKQPSKARHSQDA 343


>sp|O59276|YF71_PYRHO HYPOTHETICAL PROTEIN PH1571 >gi|7519197|pir||C71035 hypothetical
           protein PH1571 - Pyrococcus horikoshii
           >gi|3258000|dbj|BAA30683.1| (AP000006) 341aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 341
           
 Score =  562 bits (1432), Expect = e-159
 Identities = 273/341 (80%), Positives = 318/341 (93%)

Query: 3   VVRLEKEKIVWIALIAIIIFLVWETLKELISPIVFGIAATYIAYPFHIKLSRKLGKKLSV 62
           +V LEKEKIVWIA+I +IIFLVWETLK+LI+PIVFG+AA+YIAYPFHIKLS+K+GK+ SV
Sbjct: 1   MVELEKEKIVWIAIILLIIFLVWETLKDLIAPIVFGMAASYIAYPFHIKLSKKVGKRNSV 60

Query: 63  LLLSALLAIFTILFFIGVTLWITDTLRNLYAYLNSFFSWLGSLNVPSFLSSIFDAMATSF 122
           L+LS +L+IF+++FF+GVTLWITDTL+NLY YL++FFSWL +LNVP FLSS+FDA+ATSF
Sbjct: 61  LILSGILSIFSLIFFVGVTLWITDTLKNLYNYLDAFFSWLSTLNVPGFLSSLFDALATSF 120

Query: 123 PQKLRDILLQYTLSLPKLALQLIVFLAVFYATLSNSDFLAREIYELLPSSNRELGEKLIE 182
           P+KLR ILLQYTLSLPKLALQLIVFLAVFYATL N+DFLA+EIYELLP +NRELGEK+IE
Sbjct: 121 PEKLRSILLQYTLSLPKLALQLIVFLAVFYATLLNADFLAKEIYELLPLTNRELGEKMIE 180

Query: 183 KVRDTVDAILKTWLFFSIIKGMFLTIGFYLFEISNVAGSIAAGVLCVILELLPVVGGWIM 242
           KV+DTVDAILKTWLFFS++KG+FL +GFYLF+ISNVAGSIAAGVLC++LELLPVVGGWIM
Sbjct: 181 KVKDTVDAILKTWLFFSVVKGIFLALGFYLFKISNVAGSIAAGVLCIVLELLPVVGGWIM 240

Query: 243 WLAGAIILWKKSTLLALLFSIYGILTISPVPDYTLKSRFTKGRASVSSVVALVGIFGGLI 302
           WLAGAIIL ++S LLA++F+IYGI+TISP+PDY LK +F K RA VSSVVALVGIFGG I
Sbjct: 241 WLAGAIILLRRSMLLAIIFAIYGIITISPIPDYFLKPKFAKERAKVSSVVALVGIFGGWI 300

Query: 303 AFGAVGIILGPIAIGLLLALIDAWKEIKLKQPSKARHSQDA 343
           AFGAVGIILGPIAIGLLLALIDAW+EI  KQPSKA  SQDA
Sbjct: 301 AFGAVGIILGPIAIGLLLALIDAWREIGTKQPSKAHRSQDA 341


>pir||E75073 hypothetical protein PAB0658 - Pyrococcus abyssi (strain Orsay)
           >gi|5458402|emb|CAB49890.1| (AJ248286) hypothetical
           protein [Pyrococcus abyssi]
           Length = 329
           
 Score =  194 bits (488), Expect = 1e-48
 Identities = 104/338 (30%), Positives = 183/338 (53%), Gaps = 12/338 (3%)

Query: 6   LEKEKIVWIALIAIIIFLVWETLKELISPIVFGIAATYIAYPFHIKLSRKLGKKLSVLLL 65
           +E  K+V+  ++ II+FL  + +    SP+ F     YI YP H+K+S +  +K S + L
Sbjct: 1   MEVNKVVFSVIVLIILFLALKVIIPFFSPLFFAFITAYILYPVHVKISERFNEKYSAVFL 60

Query: 66  SALLAIFTILFFIGVTLWITDTLRNLYAYLNSFFSWLGSLN-VPSFLSSIFDAMATSFPQ 124
           + LL +  ++  + +   +   +   Y YL+   S   S+  +P  ++S          +
Sbjct: 61  TLLLLLGALILLLILIYTLAPVVNQAYEYLSDIESLTLSIPFIPGDIASSLQETVDKLVE 120

Query: 125 KLRDILLQYTLSLPKLALQLIVFLAVFYATLSNSDFLAREIYELLPSSNRELGEKLIEKV 184
             +D L+  T S+PK  LQ++V+L   Y  L     + R+  E L S   E   +++++ 
Sbjct: 121 IGKDYLVSITFSVPKYLLQVVVYLTFVYFFL-----VKRKAIEELLSFRDERLVRIVKRG 175

Query: 185 RDTVDAILKTWLFFSIIKGMFLTIGFYLFEISNVAGSIAAGVLCVILELLPVVGGWIMWL 244
             T+ A+++ WL  +I KG+ +T+GF  F++SNV  +I AG+L V+   +P+  GW++WL
Sbjct: 176 NVTLQALIRAWLLLNIAKGILMTVGFLAFKVSNVPTAILAGILTVLFSFVPLFEGWMIWL 235

Query: 245 AGAIILWKKSTLL-ALLFSIYGILTISPVPDYTLKSRFTKGRASVSSVVALVGIFGGLIA 303
           AGA  L K   +L  L  +IYG + +SP+PD+T++ +     A+   V+ L+G+ GG   
Sbjct: 236 AGAFYLIKNGDILTGLGLAIYGFVLVSPLPDFTIRPKLVAREANFDEVLVLIGMIGGTWG 295

Query: 304 FGAVGIILGPIAIGLLLALIDAWKEIKLKQPSKARHSQ 341
            G  G+I+GPI + + + ++  W     K  +KAR SQ
Sbjct: 296 LGLKGLIIGPIVLNVAIEMLREW-----KIQNKARGSQ 328


>sp|O58728|YA00_PYRHO HYPOTHETICAL PROTEIN PH1000 >gi|7518929|pir||C71092 hypothetical
           protein PH1000 - Pyrococcus horikoshii
           >gi|3257414|dbj|BAA30097.1| (AP000004) 355aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 355
           
 Score =  192 bits (482), Expect = 6e-48
 Identities = 97/324 (29%), Positives = 181/324 (54%), Gaps = 8/324 (2%)

Query: 11  IVWIALIAIIIFLVWETLKELISPIVFGIAATYIAYPFHIKLSRKLGKKLSVLLLSALLA 70
           + WI +I ++   + +T+    SP+ F     Y  YP HIKL  ++G K S +LL+  L 
Sbjct: 34  VTWIIIITLVALAI-KTILPFFSPLFFAFITAYALYPLHIKLKERIGSKNSAILLTLFLL 92

Query: 71  IFTILFFIGVTLWITDTLRNLYAYLNSFFSWLGSLN-VPSFLSSIFDAMATSFPQKLRDI 129
           +  ++  + +   +T  +   Y YL +      ++  VP  + S  + +   F ++ +  
Sbjct: 93  LGALMILLILVYTLTPVIGQAYDYLTNLEKIKINIPLVPKSVISSLEGVIDEFIERGKGY 152

Query: 130 LLQYTLSLPKLALQLIVFLAVFYATLSNSDFLAREIYELLPSSNRELGEKLIEKVRDTVD 189
           L+  T S+PK  LQ+IV+L   Y  L       +E  EL+   + +L  ++IE+   T+ 
Sbjct: 153 LVSLTFSVPKYLLQVIVYLTFVYFFLVKE----KEARELITFEDEKL-IRIIERGNLTLQ 207

Query: 190 AILKTWLFFSIIKGMFLTIGFYLFEISNVAGSIAAGVLCVILELLPVVGGWIMWLAGAII 249
           A+++ WL  +I+KG+ +T+GF +F++SN+  +I AG+L V+   +P+  GW++WLAGA  
Sbjct: 208 ALIRVWLLLNIVKGILMTLGFLIFKVSNLPTAILAGLLTVLFSFIPLFEGWMIWLAGAFY 267

Query: 250 LWKKSTLLA-LLFSIYGILTISPVPDYTLKSRFTKGRASVSSVVALVGIFGGLIAFGAVG 308
           L K+  ++A +  ++YG   +SP+PD+T++ +     A  + V+ L+G+ GG    G  G
Sbjct: 268 LVKQGHIIAGIGLAVYGFTLVSPLPDFTIRPKLVAREAEFNDVLVLIGMIGGTWGLGLKG 327

Query: 309 IILGPIAIGLLLALIDAWKEIKLK 332
           +I+GPI + + + ++  WK ++ K
Sbjct: 328 LIIGPIVLNVAIEMLREWKNVQAK 351


>sp|O27279|YC11_METTH HYPOTHETICAL PROTEIN MTH1211 >gi|7482098|pir||G69028 conserved
           hypothetical protein MTH1211 - Methanobacterium
           thermoautotrophicum (strain Delta H)
           >gi|2622321|gb|AAB85700.1| (AE000889) conserved protein
           [Methanobacterium thermoautotrophicum]
           Length = 334
           
 Score =  100 bits (247), Expect = 2e-20
 Identities = 81/324 (25%), Positives = 157/324 (48%), Gaps = 28/324 (8%)

Query: 14  IALIAIIIFLVWETLKELISPIVFGIAATYIAYPFHIKLSRKLGKKLSVLLLSALLAIFT 73
           + L AI+++ +W  L         G    YI  P  ++++R++   LSV ++ A++ +  
Sbjct: 20  LLLSAIVVYPLWTML-------FLGAVFAYIVRPVALRINRRI-PYLSVSIILAMIVV-- 69

Query: 74  ILFFIGVTLWITDTLRNLYAYLNSFFSWLGSLNVPSF--LSSIFDAMATSFPQKLRDIL- 130
           I+  +G+ ++  D++ N      S  S  GS++VP    L    +    +    LRDIL 
Sbjct: 70  IMPLVGILVFTVDSIINSAP---SLLSLAGSIHVPGAGNLQPSAENTLANLRTVLRDILS 126

Query: 131 --LQYTL----SLPKLALQLIVFLAVFYATLSNSDFLAREIYELLPSSNRELGEKLIEKV 184
             L Y +    S+P ++LQL VFL+  +    +   L   I  L+P   R   E++  + 
Sbjct: 127 GSLNYVVAILQSVPMISLQLFVFLSSTFYFARDGKRLVGYIRTLIPEETRPFMERMASET 186

Query: 185 RDTVDAILKTWLFFSIIKGMFLTIGFYLFEISNVAGSIAAGVLCVILELLPVVGGWIMWL 244
              + +I       ++  G+   +GF+L        +I  G++  + +L+PV+G W  + 
Sbjct: 187 ERVLLSIFYGHFLTALAIGLMAAVGFHLL---GYPYAILLGIMTGLFQLIPVIGPWAAYT 243

Query: 245 AGAIILWKKSTLL-ALLFSIYGILTISPVPDYTLKSRFTKGRASVSSVVALVGIFGGLIA 303
             +I  +    +L  +L  I+G+  +S +  Y L+ + +   A +  ++ LVG  GG + 
Sbjct: 244 PLSIYDFVTGNILRGVLVLIFGLF-LSTIDIY-LRPKLSGKYADIHPMIFLVGFLGGPVV 301

Query: 304 FGAVGIILGPIAIGLLLALIDAWK 327
           +G  G I+GP+ +GL  A ++A++
Sbjct: 302 WGVAGFIVGPLVLGLAYAALEAYR 325


>sp|Q58578|YB77_METJA HYPOTHETICAL PROTEIN MJ1177 >gi|2128709|pir||A64447 hypothetical
           protein MJ1177 - Methanococcus jannaschii
           >gi|1591804|gb|AAB99180.1| (U67559) conserved
           hypothetical protein [Methanococcus jannaschii]
           Length = 334
           
 Score = 80.0 bits (194), Expect = 4e-14
 Identities = 65/323 (20%), Positives = 148/323 (45%), Gaps = 21/323 (6%)

Query: 10  KIVWIALIAIIIFLVWETLKELISPIVFGIAATYIAYPFHIKLSRKLGKKLSVLLLSAL- 68
           K V + L+ ++++++W      I  + +  A  Y+A P +  L +K  K +S  L  ++ 
Sbjct: 11  KGVIVGLLIMLLYIIWP----FIDVLAYSCAFAYMALPVYNILRKKFNKTISAGLAISIY 66

Query: 69  ------LAIFTILFFIGVTLWITDTLRNLYAYLNSFFSWLGSLNVPSFLSSIFDAMATSF 122
                 + I+ +L F+ + L  +   +++  Y+N   S   S  +   +++    +A   
Sbjct: 67  ILPIMTITIYALLTFMEIIL--SFNTKSIEPYINEILSIYNSFMLERIINNE-QIIAKYI 123

Query: 123 PQKLRDILLQYT---LSLPKLALQLIVFLAVFYATLSNSDFLAREIYELLPSSNRELGEK 179
            + ++ ++ Q++   + +  L +++I+ L + +  L + D     I   +P   +E    
Sbjct: 124 DEFIKYLVSQFSGKIIDVGYLIVKVIMVLFLTFYFLRDGDKAKNLIISFVPDEYKEKMRI 183

Query: 180 LIEKVRDTVDAILKTWLFFSIIKGMFLTIGFYLFEISNVAGSIAAGVLCVILELLPVVGG 239
            +  + D+   +  + +  SII  +   IG+ +     V  +    ++  I  LLP++GG
Sbjct: 184 YLSYLHDSYKNLFISCVSLSIIITILSYIGYLIL---GVPYAELFAIITGIFALLPILGG 240

Query: 240 WIMWLAGAIILWKKSTLLALLFS-IYGILTISPVPDYTLKSRFTKGRASVSSVVALVGIF 298
           W+++++ AI  +        +F  IYG L +S  PD+ ++    K    +  V+ ++   
Sbjct: 241 WMVYISIAIYFFLIHDYTKAVFMFIYGELFLSIAPDFVIRPYLVKKEVDIHPVLVVIAFL 300

Query: 299 GGLIAFGAVGIILGPIAIGLLLA 321
              ++ G  G  +GP+ +G L A
Sbjct: 301 MAPLSLGLSGFAIGPLVVGALNA 323


>gi|11499389 conserved hypothetical protein [Archaeoglobus fulgidus]
           >gi|8928485|sp|O28474|YI00_ARCFU HYPOTHETICAL PROTEIN
           AF1800 >gi|7483169|pir||G69474 conserved hypothetical
           protein AF1800 - Archaeoglobus fulgidus
           >gi|2648744|gb|AAB89447.1| (AE000978) conserved
           hypothetical protein [Archaeoglobus fulgidus]
           Length = 340
           
 Score = 76.5 bits (185), Expect = 4e-13
 Identities = 66/336 (19%), Positives = 149/336 (43%), Gaps = 27/336 (8%)

Query: 11  IVWIALIAIIIFLVWETLKELISPIVFGIAATYIAYPFHIKLSRKLGKKLSVLLLSALLA 70
           +V +  I +++ L +     L+  IV G+   Y+A P   K+      K SV+  + ++ 
Sbjct: 7   LVLLLSILVVLALTFYFFTPLLDGIVMGVVFAYVAKPVKRKIEHVGRIKASVIATAIVIL 66

Query: 71  IFTILFFIGVTLWITDTLRNLYAYLNSFFSWL--GSLNVPSFL-------------SSIF 115
             ++L F G+   +   +     YL + +  +  G LN+ S +             S++F
Sbjct: 67  PISVLMFYGLIQGLNQAI-----YLITHYKVIESGILNILSKMGIEEGEEYVKWITSNVF 121

Query: 116 DAMATSFPQKLRDILLQYTLSLPKLALQLIVFLAVFYATLSNSDFLAREIYELLPSSNRE 175
             + +S      +I  + TL    L L   + + V +  L++ +   R    ++P   R+
Sbjct: 122 SILQSSIQPSAVEITKKATL----LILNFFISIVVCFYALADMENFVRRTTSVVPEDRRD 177

Query: 176 LGEKLIEKVRDTVDAILKTWLFFSIIKGMFLTIGFYLFEISNVAGSIAAGVLCVILELLP 235
              + +E++  T +++       +I+ G+ +++ F+L+   NV  +     L  +  L+P
Sbjct: 178 EFRRFVEEIDVTFESLWFGNFVVAILIGL-VSLPFFLY--FNVPFAPLLSGLMFLAALIP 234

Query: 236 VVGGWIMWLAGAIILWKKSTLLALLFSIYGILTISPVPDYTLKSRFTKGRASVSSVVALV 295
           +   W++ L  ++ L        L F + G++ +  +P+  L+  F    + +  +V ++
Sbjct: 235 IFAEWMIILPVSLYLLLVDVGRGLSFLLIGVVFLYVLPELILRPYFVGYTSKIHPLVLML 294

Query: 296 GIFGGLIAFGAVGIILGPIAIGLLLALIDAWKEIKL 331
              GG +  G  G  + P+ +GL  A+ + + + +L
Sbjct: 295 AFIGGGLVGGISGFFIAPMIVGLATAIYNYYTKEEL 330


>pir||C82300 conserved hypothetical protein VC0624 [imported] - Vibrio cholerae
           (group O1 strain N16961) >gi|9655058|gb|AAF93790.1|
           (AE004148) conserved hypothetical protein [Vibrio
           cholerae]
           Length = 361
           
 Score = 75.3 bits (182), Expect = 1e-12
 Identities = 68/345 (19%), Positives = 151/345 (43%), Gaps = 33/345 (9%)

Query: 10  KIVWIALIAIIIFLVWETLKELISPIVFGIAATYIAYPFHIKLSRKLGKK------LSVL 63
           +++ +AL+A  +   W  ++  I+ I+     + + +P H    +KL         LS +
Sbjct: 12  RVLVVALLASALACYW-LVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAAFLSCV 70

Query: 64  LLSALLAIFTILFFIGVTLWITDTLRNLYAY-----LNSFFS--WL-GSLNV-------- 107
           +L+ ++ I  +L F  +    +   +NLYA+     + + F+  W+   L++        
Sbjct: 71  VLTVIIVIPLLLIFGAIVQQGSKFSQNLYAWVTQGGIQALFNHPWVVKGLSLANHYLPFE 130

Query: 108 ---PSFLSSIFDAMATSFPQKLRDILLQYTLSLPKLALQLIVFLAVFYATLSNSDFLARE 164
              P  ++      AT+F   L  I  +         +   + L V +  L + D +   
Sbjct: 131 EISPQQIAQRIGQFATTFGSNLVSISAKILGDATSFVMHFFLMLFVLFFLLRDHDKIISA 190

Query: 165 IYELLPSSNRELGEKLIEKVRDTVDAILKTWLFFSIIKGMFLTIGFYLFEISNVAGSIAA 224
           I  +LP S R   ++L+ ++ +   + +      +I +G+   IG +L     +      
Sbjct: 191 IRHILPLS-RSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMWLAGFPGLFW---- 245

Query: 225 GVLCVILELLPVVGGWIMWLAGAIILWKKS-TLLALLFSIYGILTISPVPDYTLKSRFTK 283
           G +      +PVVG  ++W+   + L+    T  A+  +I+ +  +  + D  L+    +
Sbjct: 246 GTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSI-DNLLRPFLMQ 304

Query: 284 GRASVSSVVALVGIFGGLIAFGAVGIILGPIAIGLLLALIDAWKE 328
           G A +++++    + GG+  FG +G+I GP+   + + L + ++E
Sbjct: 305 GSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEE 349


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.329    0.144    0.426 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 118894423
Number of Sequences: 2977
Number of extensions: 4670686
Number of successful extensions: 22801
Number of sequences better than 1.0e-10: 8
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 22784
Number of HSP's gapped (non-prelim): 9
length of query: 343
length of database: 189,106,746
effective HSP length: 53
effective length of query: 290
effective length of database: 157,386,935
effective search space: 45642211150
effective search space used: 45642211150
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 165 (68.7 bits)