BLASTP 2.0.10 [Aug-26-1999] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= PAB1962 (PAB1962) DE:Membrane protein (343 letters) Database: ./suso.pep; /banques/blast2/nr.pep 598,487 sequences; 189,106,746 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value pir||G75178 membrane protein PAB1962 - Pyrococcus abyssi (strain... 666 0.0 sp|O59276|YF71_PYRHO HYPOTHETICAL PROTEIN PH1571 >gi|7519197|pir... 562 e-159 pir||E75073 hypothetical protein PAB0658 - Pyrococcus abyssi (st... 194 1e-48 sp|O58728|YA00_PYRHO HYPOTHETICAL PROTEIN PH1000 >gi|7518929|pir... 192 6e-48 sp|O27279|YC11_METTH HYPOTHETICAL PROTEIN MTH1211 >gi|7482098|pi... 100 2e-20 sp|Q58578|YB77_METJA HYPOTHETICAL PROTEIN MJ1177 >gi|2128709|pir... 80 4e-14 gi|11499389 conserved hypothetical protein [Archaeoglobus fulgid... 76 4e-13 pir||C82300 conserved hypothetical protein VC0624 [imported] - V... 75 1e-12 >pir||G75178 membrane protein PAB1962 - Pyrococcus abyssi (strain Orsay) >gi|5458020|emb|CAB49510.1| (AJ248284) Membrane protein [Pyrococcus abyssi] Length = 343 Score = 666 bits (1699), Expect = 0.0 Identities = 343/343 (100%), Positives = 343/343 (100%) Query: 1 MGVVRLEKEKIVWIALIAIIIFLVWETLKELISPIVFGIAATYIAYPFHIKLSRKLGKKL 60 MGVVRLEKEKIVWIALIAIIIFLVWETLKELISPIVFGIAATYIAYPFHIKLSRKLGKKL Sbjct: 1 MGVVRLEKEKIVWIALIAIIIFLVWETLKELISPIVFGIAATYIAYPFHIKLSRKLGKKL 60 Query: 61 SVLLLSALLAIFTILFFIGVTLWITDTLRNLYAYLNSFFSWLGSLNVPSFLSSIFDAMAT 120 SVLLLSALLAIFTILFFIGVTLWITDTLRNLYAYLNSFFSWLGSLNVPSFLSSIFDAMAT Sbjct: 61 SVLLLSALLAIFTILFFIGVTLWITDTLRNLYAYLNSFFSWLGSLNVPSFLSSIFDAMAT 120 Query: 121 SFPQKLRDILLQYTLSLPKLALQLIVFLAVFYATLSNSDFLAREIYELLPSSNRELGEKL 180 SFPQKLRDILLQYTLSLPKLALQLIVFLAVFYATLSNSDFLAREIYELLPSSNRELGEKL Sbjct: 121 SFPQKLRDILLQYTLSLPKLALQLIVFLAVFYATLSNSDFLAREIYELLPSSNRELGEKL 180 Query: 181 IEKVRDTVDAILKTWLFFSIIKGMFLTIGFYLFEISNVAGSIAAGVLCVILELLPVVGGW 240 IEKVRDTVDAILKTWLFFSIIKGMFLTIGFYLFEISNVAGSIAAGVLCVILELLPVVGGW Sbjct: 181 IEKVRDTVDAILKTWLFFSIIKGMFLTIGFYLFEISNVAGSIAAGVLCVILELLPVVGGW 240 Query: 241 IMWLAGAIILWKKSTLLALLFSIYGILTISPVPDYTLKSRFTKGRASVSSVVALVGIFGG 300 IMWLAGAIILWKKSTLLALLFSIYGILTISPVPDYTLKSRFTKGRASVSSVVALVGIFGG Sbjct: 241 IMWLAGAIILWKKSTLLALLFSIYGILTISPVPDYTLKSRFTKGRASVSSVVALVGIFGG 300 Query: 301 LIAFGAVGIILGPIAIGLLLALIDAWKEIKLKQPSKARHSQDA 343 LIAFGAVGIILGPIAIGLLLALIDAWKEIKLKQPSKARHSQDA Sbjct: 301 LIAFGAVGIILGPIAIGLLLALIDAWKEIKLKQPSKARHSQDA 343 >sp|O59276|YF71_PYRHO HYPOTHETICAL PROTEIN PH1571 >gi|7519197|pir||C71035 hypothetical protein PH1571 - Pyrococcus horikoshii >gi|3258000|dbj|BAA30683.1| (AP000006) 341aa long hypothetical protein [Pyrococcus horikoshii] Length = 341 Score = 562 bits (1432), Expect = e-159 Identities = 273/341 (80%), Positives = 318/341 (93%) Query: 3 VVRLEKEKIVWIALIAIIIFLVWETLKELISPIVFGIAATYIAYPFHIKLSRKLGKKLSV 62 +V LEKEKIVWIA+I +IIFLVWETLK+LI+PIVFG+AA+YIAYPFHIKLS+K+GK+ SV Sbjct: 1 MVELEKEKIVWIAIILLIIFLVWETLKDLIAPIVFGMAASYIAYPFHIKLSKKVGKRNSV 60 Query: 63 LLLSALLAIFTILFFIGVTLWITDTLRNLYAYLNSFFSWLGSLNVPSFLSSIFDAMATSF 122 L+LS +L+IF+++FF+GVTLWITDTL+NLY YL++FFSWL +LNVP FLSS+FDA+ATSF Sbjct: 61 LILSGILSIFSLIFFVGVTLWITDTLKNLYNYLDAFFSWLSTLNVPGFLSSLFDALATSF 120 Query: 123 PQKLRDILLQYTLSLPKLALQLIVFLAVFYATLSNSDFLAREIYELLPSSNRELGEKLIE 182 P+KLR ILLQYTLSLPKLALQLIVFLAVFYATL N+DFLA+EIYELLP +NRELGEK+IE Sbjct: 121 PEKLRSILLQYTLSLPKLALQLIVFLAVFYATLLNADFLAKEIYELLPLTNRELGEKMIE 180 Query: 183 KVRDTVDAILKTWLFFSIIKGMFLTIGFYLFEISNVAGSIAAGVLCVILELLPVVGGWIM 242 KV+DTVDAILKTWLFFS++KG+FL +GFYLF+ISNVAGSIAAGVLC++LELLPVVGGWIM Sbjct: 181 KVKDTVDAILKTWLFFSVVKGIFLALGFYLFKISNVAGSIAAGVLCIVLELLPVVGGWIM 240 Query: 243 WLAGAIILWKKSTLLALLFSIYGILTISPVPDYTLKSRFTKGRASVSSVVALVGIFGGLI 302 WLAGAIIL ++S LLA++F+IYGI+TISP+PDY LK +F K RA VSSVVALVGIFGG I Sbjct: 241 WLAGAIILLRRSMLLAIIFAIYGIITISPIPDYFLKPKFAKERAKVSSVVALVGIFGGWI 300 Query: 303 AFGAVGIILGPIAIGLLLALIDAWKEIKLKQPSKARHSQDA 343 AFGAVGIILGPIAIGLLLALIDAW+EI KQPSKA SQDA Sbjct: 301 AFGAVGIILGPIAIGLLLALIDAWREIGTKQPSKAHRSQDA 341 >pir||E75073 hypothetical protein PAB0658 - Pyrococcus abyssi (strain Orsay) >gi|5458402|emb|CAB49890.1| (AJ248286) hypothetical protein [Pyrococcus abyssi] Length = 329 Score = 194 bits (488), Expect = 1e-48 Identities = 104/338 (30%), Positives = 183/338 (53%), Gaps = 12/338 (3%) Query: 6 LEKEKIVWIALIAIIIFLVWETLKELISPIVFGIAATYIAYPFHIKLSRKLGKKLSVLLL 65 +E K+V+ ++ II+FL + + SP+ F YI YP H+K+S + +K S + L Sbjct: 1 MEVNKVVFSVIVLIILFLALKVIIPFFSPLFFAFITAYILYPVHVKISERFNEKYSAVFL 60 Query: 66 SALLAIFTILFFIGVTLWITDTLRNLYAYLNSFFSWLGSLN-VPSFLSSIFDAMATSFPQ 124 + LL + ++ + + + + Y YL+ S S+ +P ++S + Sbjct: 61 TLLLLLGALILLLILIYTLAPVVNQAYEYLSDIESLTLSIPFIPGDIASSLQETVDKLVE 120 Query: 125 KLRDILLQYTLSLPKLALQLIVFLAVFYATLSNSDFLAREIYELLPSSNRELGEKLIEKV 184 +D L+ T S+PK LQ++V+L Y L + R+ E L S E +++++ Sbjct: 121 IGKDYLVSITFSVPKYLLQVVVYLTFVYFFL-----VKRKAIEELLSFRDERLVRIVKRG 175 Query: 185 RDTVDAILKTWLFFSIIKGMFLTIGFYLFEISNVAGSIAAGVLCVILELLPVVGGWIMWL 244 T+ A+++ WL +I KG+ +T+GF F++SNV +I AG+L V+ +P+ GW++WL Sbjct: 176 NVTLQALIRAWLLLNIAKGILMTVGFLAFKVSNVPTAILAGILTVLFSFVPLFEGWMIWL 235 Query: 245 AGAIILWKKSTLL-ALLFSIYGILTISPVPDYTLKSRFTKGRASVSSVVALVGIFGGLIA 303 AGA L K +L L +IYG + +SP+PD+T++ + A+ V+ L+G+ GG Sbjct: 236 AGAFYLIKNGDILTGLGLAIYGFVLVSPLPDFTIRPKLVAREANFDEVLVLIGMIGGTWG 295 Query: 304 FGAVGIILGPIAIGLLLALIDAWKEIKLKQPSKARHSQ 341 G G+I+GPI + + + ++ W K +KAR SQ Sbjct: 296 LGLKGLIIGPIVLNVAIEMLREW-----KIQNKARGSQ 328 >sp|O58728|YA00_PYRHO HYPOTHETICAL PROTEIN PH1000 >gi|7518929|pir||C71092 hypothetical protein PH1000 - Pyrococcus horikoshii >gi|3257414|dbj|BAA30097.1| (AP000004) 355aa long hypothetical protein [Pyrococcus horikoshii] Length = 355 Score = 192 bits (482), Expect = 6e-48 Identities = 97/324 (29%), Positives = 181/324 (54%), Gaps = 8/324 (2%) Query: 11 IVWIALIAIIIFLVWETLKELISPIVFGIAATYIAYPFHIKLSRKLGKKLSVLLLSALLA 70 + WI +I ++ + +T+ SP+ F Y YP HIKL ++G K S +LL+ L Sbjct: 34 VTWIIIITLVALAI-KTILPFFSPLFFAFITAYALYPLHIKLKERIGSKNSAILLTLFLL 92 Query: 71 IFTILFFIGVTLWITDTLRNLYAYLNSFFSWLGSLN-VPSFLSSIFDAMATSFPQKLRDI 129 + ++ + + +T + Y YL + ++ VP + S + + F ++ + Sbjct: 93 LGALMILLILVYTLTPVIGQAYDYLTNLEKIKINIPLVPKSVISSLEGVIDEFIERGKGY 152 Query: 130 LLQYTLSLPKLALQLIVFLAVFYATLSNSDFLAREIYELLPSSNRELGEKLIEKVRDTVD 189 L+ T S+PK LQ+IV+L Y L +E EL+ + +L ++IE+ T+ Sbjct: 153 LVSLTFSVPKYLLQVIVYLTFVYFFLVKE----KEARELITFEDEKL-IRIIERGNLTLQ 207 Query: 190 AILKTWLFFSIIKGMFLTIGFYLFEISNVAGSIAAGVLCVILELLPVVGGWIMWLAGAII 249 A+++ WL +I+KG+ +T+GF +F++SN+ +I AG+L V+ +P+ GW++WLAGA Sbjct: 208 ALIRVWLLLNIVKGILMTLGFLIFKVSNLPTAILAGLLTVLFSFIPLFEGWMIWLAGAFY 267 Query: 250 LWKKSTLLA-LLFSIYGILTISPVPDYTLKSRFTKGRASVSSVVALVGIFGGLIAFGAVG 308 L K+ ++A + ++YG +SP+PD+T++ + A + V+ L+G+ GG G G Sbjct: 268 LVKQGHIIAGIGLAVYGFTLVSPLPDFTIRPKLVAREAEFNDVLVLIGMIGGTWGLGLKG 327 Query: 309 IILGPIAIGLLLALIDAWKEIKLK 332 +I+GPI + + + ++ WK ++ K Sbjct: 328 LIIGPIVLNVAIEMLREWKNVQAK 351 >sp|O27279|YC11_METTH HYPOTHETICAL PROTEIN MTH1211 >gi|7482098|pir||G69028 conserved hypothetical protein MTH1211 - Methanobacterium thermoautotrophicum (strain Delta H) >gi|2622321|gb|AAB85700.1| (AE000889) conserved protein [Methanobacterium thermoautotrophicum] Length = 334 Score = 100 bits (247), Expect = 2e-20 Identities = 81/324 (25%), Positives = 157/324 (48%), Gaps = 28/324 (8%) Query: 14 IALIAIIIFLVWETLKELISPIVFGIAATYIAYPFHIKLSRKLGKKLSVLLLSALLAIFT 73 + L AI+++ +W L G YI P ++++R++ LSV ++ A++ + Sbjct: 20 LLLSAIVVYPLWTML-------FLGAVFAYIVRPVALRINRRI-PYLSVSIILAMIVV-- 69 Query: 74 ILFFIGVTLWITDTLRNLYAYLNSFFSWLGSLNVPSF--LSSIFDAMATSFPQKLRDIL- 130 I+ +G+ ++ D++ N S S GS++VP L + + LRDIL Sbjct: 70 IMPLVGILVFTVDSIINSAP---SLLSLAGSIHVPGAGNLQPSAENTLANLRTVLRDILS 126 Query: 131 --LQYTL----SLPKLALQLIVFLAVFYATLSNSDFLAREIYELLPSSNRELGEKLIEKV 184 L Y + S+P ++LQL VFL+ + + L I L+P R E++ + Sbjct: 127 GSLNYVVAILQSVPMISLQLFVFLSSTFYFARDGKRLVGYIRTLIPEETRPFMERMASET 186 Query: 185 RDTVDAILKTWLFFSIIKGMFLTIGFYLFEISNVAGSIAAGVLCVILELLPVVGGWIMWL 244 + +I ++ G+ +GF+L +I G++ + +L+PV+G W + Sbjct: 187 ERVLLSIFYGHFLTALAIGLMAAVGFHLL---GYPYAILLGIMTGLFQLIPVIGPWAAYT 243 Query: 245 AGAIILWKKSTLL-ALLFSIYGILTISPVPDYTLKSRFTKGRASVSSVVALVGIFGGLIA 303 +I + +L +L I+G+ +S + Y L+ + + A + ++ LVG GG + Sbjct: 244 PLSIYDFVTGNILRGVLVLIFGLF-LSTIDIY-LRPKLSGKYADIHPMIFLVGFLGGPVV 301 Query: 304 FGAVGIILGPIAIGLLLALIDAWK 327 +G G I+GP+ +GL A ++A++ Sbjct: 302 WGVAGFIVGPLVLGLAYAALEAYR 325 >sp|Q58578|YB77_METJA HYPOTHETICAL PROTEIN MJ1177 >gi|2128709|pir||A64447 hypothetical protein MJ1177 - Methanococcus jannaschii >gi|1591804|gb|AAB99180.1| (U67559) conserved hypothetical protein [Methanococcus jannaschii] Length = 334 Score = 80.0 bits (194), Expect = 4e-14 Identities = 65/323 (20%), Positives = 148/323 (45%), Gaps = 21/323 (6%) Query: 10 KIVWIALIAIIIFLVWETLKELISPIVFGIAATYIAYPFHIKLSRKLGKKLSVLLLSAL- 68 K V + L+ ++++++W I + + A Y+A P + L +K K +S L ++ Sbjct: 11 KGVIVGLLIMLLYIIWP----FIDVLAYSCAFAYMALPVYNILRKKFNKTISAGLAISIY 66 Query: 69 ------LAIFTILFFIGVTLWITDTLRNLYAYLNSFFSWLGSLNVPSFLSSIFDAMATSF 122 + I+ +L F+ + L + +++ Y+N S S + +++ +A Sbjct: 67 ILPIMTITIYALLTFMEIIL--SFNTKSIEPYINEILSIYNSFMLERIINNE-QIIAKYI 123 Query: 123 PQKLRDILLQYT---LSLPKLALQLIVFLAVFYATLSNSDFLAREIYELLPSSNRELGEK 179 + ++ ++ Q++ + + L +++I+ L + + L + D I +P +E Sbjct: 124 DEFIKYLVSQFSGKIIDVGYLIVKVIMVLFLTFYFLRDGDKAKNLIISFVPDEYKEKMRI 183 Query: 180 LIEKVRDTVDAILKTWLFFSIIKGMFLTIGFYLFEISNVAGSIAAGVLCVILELLPVVGG 239 + + D+ + + + SII + IG+ + V + ++ I LLP++GG Sbjct: 184 YLSYLHDSYKNLFISCVSLSIIITILSYIGYLIL---GVPYAELFAIITGIFALLPILGG 240 Query: 240 WIMWLAGAIILWKKSTLLALLFS-IYGILTISPVPDYTLKSRFTKGRASVSSVVALVGIF 298 W+++++ AI + +F IYG L +S PD+ ++ K + V+ ++ Sbjct: 241 WMVYISIAIYFFLIHDYTKAVFMFIYGELFLSIAPDFVIRPYLVKKEVDIHPVLVVIAFL 300 Query: 299 GGLIAFGAVGIILGPIAIGLLLA 321 ++ G G +GP+ +G L A Sbjct: 301 MAPLSLGLSGFAIGPLVVGALNA 323 >gi|11499389 conserved hypothetical protein [Archaeoglobus fulgidus] >gi|8928485|sp|O28474|YI00_ARCFU HYPOTHETICAL PROTEIN AF1800 >gi|7483169|pir||G69474 conserved hypothetical protein AF1800 - Archaeoglobus fulgidus >gi|2648744|gb|AAB89447.1| (AE000978) conserved hypothetical protein [Archaeoglobus fulgidus] Length = 340 Score = 76.5 bits (185), Expect = 4e-13 Identities = 66/336 (19%), Positives = 149/336 (43%), Gaps = 27/336 (8%) Query: 11 IVWIALIAIIIFLVWETLKELISPIVFGIAATYIAYPFHIKLSRKLGKKLSVLLLSALLA 70 +V + I +++ L + L+ IV G+ Y+A P K+ K SV+ + ++ Sbjct: 7 LVLLLSILVVLALTFYFFTPLLDGIVMGVVFAYVAKPVKRKIEHVGRIKASVIATAIVIL 66 Query: 71 IFTILFFIGVTLWITDTLRNLYAYLNSFFSWL--GSLNVPSFL-------------SSIF 115 ++L F G+ + + YL + + + G LN+ S + S++F Sbjct: 67 PISVLMFYGLIQGLNQAI-----YLITHYKVIESGILNILSKMGIEEGEEYVKWITSNVF 121 Query: 116 DAMATSFPQKLRDILLQYTLSLPKLALQLIVFLAVFYATLSNSDFLAREIYELLPSSNRE 175 + +S +I + TL L L + + V + L++ + R ++P R+ Sbjct: 122 SILQSSIQPSAVEITKKATL----LILNFFISIVVCFYALADMENFVRRTTSVVPEDRRD 177 Query: 176 LGEKLIEKVRDTVDAILKTWLFFSIIKGMFLTIGFYLFEISNVAGSIAAGVLCVILELLP 235 + +E++ T +++ +I+ G+ +++ F+L+ NV + L + L+P Sbjct: 178 EFRRFVEEIDVTFESLWFGNFVVAILIGL-VSLPFFLY--FNVPFAPLLSGLMFLAALIP 234 Query: 236 VVGGWIMWLAGAIILWKKSTLLALLFSIYGILTISPVPDYTLKSRFTKGRASVSSVVALV 295 + W++ L ++ L L F + G++ + +P+ L+ F + + +V ++ Sbjct: 235 IFAEWMIILPVSLYLLLVDVGRGLSFLLIGVVFLYVLPELILRPYFVGYTSKIHPLVLML 294 Query: 296 GIFGGLIAFGAVGIILGPIAIGLLLALIDAWKEIKL 331 GG + G G + P+ +GL A+ + + + +L Sbjct: 295 AFIGGGLVGGISGFFIAPMIVGLATAIYNYYTKEEL 330 >pir||C82300 conserved hypothetical protein VC0624 [imported] - Vibrio cholerae (group O1 strain N16961) >gi|9655058|gb|AAF93790.1| (AE004148) conserved hypothetical protein [Vibrio cholerae] Length = 361 Score = 75.3 bits (182), Expect = 1e-12 Identities = 68/345 (19%), Positives = 151/345 (43%), Gaps = 33/345 (9%) Query: 10 KIVWIALIAIIIFLVWETLKELISPIVFGIAATYIAYPFHIKLSRKLGKK------LSVL 63 +++ +AL+A + W ++ I+ I+ + + +P H +KL LS + Sbjct: 12 RVLVVALLASALACYW-LVEPYINSIIMAFIISLLMFPIHDWFEKKLPSHNNLAAFLSCV 70 Query: 64 LLSALLAIFTILFFIGVTLWITDTLRNLYAY-----LNSFFS--WL-GSLNV-------- 107 +L+ ++ I +L F + + +NLYA+ + + F+ W+ L++ Sbjct: 71 VLTVIIVIPLLLIFGAIVQQGSKFSQNLYAWVTQGGIQALFNHPWVVKGLSLANHYLPFE 130 Query: 108 ---PSFLSSIFDAMATSFPQKLRDILLQYTLSLPKLALQLIVFLAVFYATLSNSDFLARE 164 P ++ AT+F L I + + + L V + L + D + Sbjct: 131 EISPQQIAQRIGQFATTFGSNLVSISAKILGDATSFVMHFFLMLFVLFFLLRDHDKIISA 190 Query: 165 IYELLPSSNRELGEKLIEKVRDTVDAILKTWLFFSIIKGMFLTIGFYLFEISNVAGSIAA 224 I +LP S R ++L+ ++ + + + +I +G+ IG +L + Sbjct: 191 IRHILPLS-RSQEDRLLSEIENVSKSAVMGSFLTAIAQGVAGGIGMWLAGFPGLFW---- 245 Query: 225 GVLCVILELLPVVGGWIMWLAGAIILWKKS-TLLALLFSIYGILTISPVPDYTLKSRFTK 283 G + +PVVG ++W+ + L+ T A+ +I+ + + + D L+ + Sbjct: 246 GTMMGFASFIPVVGTALIWIPATLYLFLTGDTTWAIFLAIWSVAVVGSI-DNLLRPFLMQ 304 Query: 284 GRASVSSVVALVGIFGGLIAFGAVGIILGPIAIGLLLALIDAWKE 328 G A +++++ + GG+ FG +G+I GP+ + + L + ++E Sbjct: 305 GSAGMNTLMIFFSLLGGIQLFGLIGLIYGPLIFAITMVLFNIYEE 349 Database: ./suso.pep Posted date: Jul 6, 2001 5:57 PM Number of letters in database: 840,471 Number of sequences in database: 2977 Database: /banques/blast2/nr.pep Posted date: Dec 14, 2000 12:46 PM Number of letters in database: 188,266,275 Number of sequences in database: 595,510 Lambda K H 0.329 0.144 0.426 Gapped Lambda K H 0.270 0.0470 0.230 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 118894423 Number of Sequences: 2977 Number of extensions: 4670686 Number of successful extensions: 22801 Number of sequences better than 1.0e-10: 8 Number of HSP's better than 0.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 22784 Number of HSP's gapped (non-prelim): 9 length of query: 343 length of database: 189,106,746 effective HSP length: 53 effective length of query: 290 effective length of database: 157,386,935 effective search space: 45642211150 effective search space used: 45642211150 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.8 bits) X3: 64 (24.9 bits) S1: 40 (21.8 bits) S2: 165 (68.7 bits)