BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB1964 556722 556249 -158 !not a gene!
         (158 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F71035 hypothetical protein PH1574 - Pyrococcus horikoshii ...   131  6e-30
pir||G72508 hypothetical protein APE2045 - Aeropyrum pernix (str...    68  6e-11

>pir||F71035 hypothetical protein PH1574 - Pyrococcus horikoshii
           >gi|3258003|dbj|BAA30686.1| (AP000006) 130aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 130
           
 Score =  131 bits (325), Expect = 6e-30
 Identities = 70/125 (56%), Positives = 76/125 (60%)

Query: 32  INALALSTKSLPKTPLNSSSLSWAIIEVPSIPAPFVIIMAXXXXXXXXXXXXXXXXXXIV 91
           + ALALSTK  PKTPL+SSSLSWAIIEVPSIPAPFV I+A                  IV
Sbjct: 1   MKALALSTKFEPKTPLSSSSLSWAIIEVPSIPAPFVRIIASPGLGFGTTRFSFSTSPSIV 60

Query: 92  PTTMGLLRPGVTSVCPPTIAIPXXXXXXXXXXXXXXXXXXXDPSGIKIVTRNHLGLAPKV 151
           PTT+G   PGVTSV PPTI IP                   +PSG  IVT+NH GLAPKV
Sbjct: 61  PTTIGFFNPGVTSVWPPTIDIPIPSATSRTSSIMVMTSLNSEPSGSSIVTKNHFGLAPKV 120

Query: 152 ATSFA 156
           ATSFA
Sbjct: 121 ATSFA 125


>pir||G72508 hypothetical protein APE2045 - Aeropyrum pernix (strain K1)
           >gi|5105743|dbj|BAA81055.1| (AP000063) 232aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 232
           
 Score = 67.9 bits (163), Expect = 6e-11
 Identities = 56/165 (33%), Positives = 73/165 (43%), Gaps = 12/165 (7%)

Query: 2   PLAIPPSVGSCIAVAN--SLAIIASLTMLISSINALALSTKSLPKTP--LNSSSLSWAII 57
           P   PPSVGSCIA+    S + IAS TML    + LA +  S P TP  L+ S+ S AI+
Sbjct: 72  PPRTPPSVGSCIALTTPASASSIASSTMLTLEASILAPAIASSP-TPRLLSMSAKSVAIM 130

Query: 58  EVPSIPAPFVIIMAXXXXXXXXXXXXXXXXXXIVP----TTMGLLRPGVTSVCPPTIAIP 113
            VPS+ A    +                    ++P    T +GL  PG  SV PPTI+ P
Sbjct: 131 AVPSMAAG---LTWRTRSPGLAALVGVVHPPHVIPAAAATMIGLGTPGAASVWPPTISTP 187

Query: 114 XXXXXXXXXXXXXXXXXXXDPSGIKIVTRNHLGLAPKVATSFALT 158
                              +P G+   + +HLG AP  A S A T
Sbjct: 188 ISSAALTASPSREARLSSLEPGGMSTASISHLGRAPVTAMSLAAT 232


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.133    0.383 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41333638
Number of Sequences: 2977
Number of extensions: 1035598
Number of successful extensions: 2562
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2560
Number of HSP's gapped (non-prelim): 2
length of query: 158
length of database: 189,106,746
effective HSP length: 56
effective length of query: 102
effective length of database: 155,591,474
effective search space: 15870330348
effective search space used: 15870330348
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 161 (67.1 bits)