BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB1965 (PAB1965) DE:Hypothetical protein
(287 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75178 hypothetical protein PAB1965 - Pyrococcus abyssi (st... 564 e-160
pir||G71035 hypothetical protein PH1575 - Pyrococcus horikoshii ... 437 e-122
sp|Q57655|Y202_METJA HYPOTHETICAL PROTEIN MJ0202 >gi|2128176|pir... 171 1e-41
pir||C69100 conserved hypothetical protein MTH1744 - Methanobact... 165 6e-40
gi|11498704 conserved hypothetical protein [Archaeoglobus fulgid... 150 2e-35
pir||G70376 conserved hypothetical protein aq_893 - Aquifex aeol... 147 1e-34
pir||F72409 conserved hypothetical protein - Thermotoga maritima... 145 5e-34
emb|CAB71142.1| (AJ271724) hypothetical protein OrfB [Eubacteriu... 114 1e-24
>pir||E75178 hypothetical protein PAB1965 - Pyrococcus abyssi (strain Orsay)
>gi|5458018|emb|CAB49508.1| (AJ248284) hypothetical
protein [Pyrococcus abyssi]
Length = 287
Score = 564 bits (1438), Expect = e-160
Identities = 287/287 (100%), Positives = 287/287 (100%)
Query: 1 MKVHYECLTCMATQCQRIAEMATQDLELRKKAMFLAAKLIAREYHENAIPAIAGSLVFLE 60
MKVHYECLTCMATQCQRIAEMATQDLELRKKAMFLAAKLIAREYHENAIPAIAGSLVFLE
Sbjct: 1 MKVHYECLTCMATQCQRIAEMATQDLELRKKAMFLAAKLIAREYHENAIPAIAGSLVFLE 60
Query: 61 LYKFLGNDDPFKKYKERSNAIARDVVKLLKEKLDIDFKTAVKLAIIGNVIDFSVGFSPEK 120
LYKFLGNDDPFKKYKERSNAIARDVVKLLKEKLDIDFKTAVKLAIIGNVIDFSVGFSPEK
Sbjct: 61 LYKFLGNDDPFKKYKERSNAIARDVVKLLKEKLDIDFKTAVKLAIIGNVIDFSVGFSPEK 120
Query: 121 LEEEVEKMLSEELYIDESDELLREIKRARSILYLTDNVGEHHFDAILLEKIKEVSRAELY 180
LEEEVEKMLSEELYIDESDELLREIKRARSILYLTDNVGEHHFDAILLEKIKEVSRAELY
Sbjct: 121 LEEEVEKMLSEELYIDESDELLREIKRARSILYLTDNVGEHHFDAILLEKIKEVSRAELY 180
Query: 181 IAGKEGAIINDVTVEDLKRDGFERFGRIVSTGTRIVGVPINDVSDEFRRIFEESDIIIAK 240
IAGKEGAIINDVTVEDLKRDGFERFGRIVSTGTRIVGVPINDVSDEFRRIFEESDIIIAK
Sbjct: 181 IAGKEGAIINDVTVEDLKRDGFERFGRIVSTGTRIVGVPINDVSDEFRRIFEESDIIIAK 240
Query: 241 GQGNFETLSELKDERVFFLLKAKCPAVARELKVPRGALVCMRNATRR 287
GQGNFETLSELKDERVFFLLKAKCPAVARELKVPRGALVCMRNATRR
Sbjct: 241 GQGNFETLSELKDERVFFLLKAKCPAVARELKVPRGALVCMRNATRR 287
>pir||G71035 hypothetical protein PH1575 - Pyrococcus horikoshii
>gi|3258004|dbj|BAA30687.1| (AP000006) 287aa long
hypothetical protein [Pyrococcus horikoshii]
Length = 287
Score = 437 bits (1113), Expect = e-122
Identities = 210/283 (74%), Positives = 248/283 (87%)
Query: 1 MKVHYECLTCMATQCQRIAEMATQDLELRKKAMFLAAKLIAREYHENAIPAIAGSLVFLE 60
MKV YECLTCMA QCQRI EMATQD+++R++AM LAAKL+A+EY+ENAIPAIAGSL+FLE
Sbjct: 1 MKVQYECLTCMANQCQRIVEMATQDMDIRRRAMILAAKLLAKEYNENAIPAIAGSLIFLE 60
Query: 61 LYKFLGNDDPFKKYKERSNAIARDVVKLLKEKLDIDFKTAVKLAIIGNVIDFSVGFSPEK 120
LYKFLGNDDPF +YK +S +AR V ++K KL +DF+ AVKLAIIGNVIDFSVGFSPE
Sbjct: 61 LYKFLGNDDPFIEYKLKSEEMARKVADIIKRKLKLDFELAVKLAIIGNVIDFSVGFSPED 120
Query: 121 LEEEVEKMLSEELYIDESDELLREIKRARSILYLTDNVGEHHFDAILLEKIKEVSRAELY 180
LEEEVEKML ++LYID+S EL E+KRA +ILY+TDNVGEH+FDAIL+EKI+E+S AE+Y
Sbjct: 121 LEEEVEKMLKDKLYIDDSKELFEEVKRAENILYITDNVGEHYFDAILIEKIREISNAEVY 180
Query: 181 IAGKEGAIINDVTVEDLKRDGFERFGRIVSTGTRIVGVPINDVSDEFRRIFEESDIIIAK 240
IAGKEG IIND TVEDLKR G E+ G+++STGTRIVGVP+ VS EF F ++D+IIAK
Sbjct: 181 IAGKEGPIINDATVEDLKRAGLEKLGKVISTGTRIVGVPLKLVSREFMEAFNKADVIIAK 240
Query: 241 GQGNFETLSELKDERVFFLLKAKCPAVARELKVPRGALVCMRN 283
GQGNFETLSE+ D R+FFLLKAKCPAVARELKVP+GALVCMRN
Sbjct: 241 GQGNFETLSEINDSRIFFLLKAKCPAVARELKVPKGALVCMRN 283
>sp|Q57655|Y202_METJA HYPOTHETICAL PROTEIN MJ0202 >gi|2128176|pir||C64325 conserved
hypothetical protein MJ0202 - Methanococcus jannaschii
>gi|1590945|gb|AAB98186.1| (U67476) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 304
Score = 171 bits (428), Expect = 1e-41
Identities = 100/292 (34%), Positives = 166/292 (56%), Gaps = 11/292 (3%)
Query: 1 MKVHYECLTCMATQCQRIAEMATQDLELRKKAMFLAAKLIAREYHENAIPAIAGSLVFLE 60
+K+ EC C+ Q A T D + + + ++I Y E+A+PA G++V
Sbjct: 13 VKIKPECAICIIRQVVDAANEITDDEREQFRLIKSTMEVIKDVYGESAVPAWMGTVVHRY 72
Query: 61 LYKFLGNDDPFKKYKERSNAIARDVVKLLKEKLDID-----FKTAVKLAIIGNVIDFSVG 115
L K N+DP+K KE++N IA + ++E + D + V I GNVIDF
Sbjct: 73 LKKISNNNDPYKNLKEKANKIALQYLDKVREMSNTDDELERLRKKVLATIAGNVIDFGAY 132
Query: 116 FSPEKLEEEVEKMLSEELYIDESDELLREIK--RARSILYLTDNVGEHHFDAILLEKIKE 173
+ +E+ +E L+ EL ID S +LL ++K + ILY+ DN GE FD +L+E+IK+
Sbjct: 133 STGINIEKLIEDTLNGELKIDNSRKLLNDLKDKNIKKILYICDNAGEIIFDRVLMEEIKK 192
Query: 174 VSRAELYIAGKEGAIINDVTVEDLKRDGFERFGRIVSTGTRIVGVPINDVSDEFRRIFEE 233
+ ++ K I+ND T+ED K + ++++TG+ I+G+ + + S+EF + FE
Sbjct: 193 YDK-DIVAVVKGKPILNDATLEDAKIAKIDEIAKVITTGSDIIGIILEECSEEFLKEFES 251
Query: 234 SDIIIAKGQGNFETLSELK---DERVFFLLKAKCPAVARELKVPRGALVCMR 282
+D+IIAKG GN+E+L+E + D+ ++++LKAKC VA + V G V ++
Sbjct: 252 ADLIIAKGMGNYESLTEYEDKIDKPIYYILKAKCKPVAENIGVDVGDNVLLK 303
>pir||C69100 conserved hypothetical protein MTH1744 - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2622876|gb|AAB86214.1| (AE000930) conserved protein
[Methanobacterium thermoautotrophicum]
Length = 286
Score = 165 bits (413), Expect = 6e-40
Identities = 97/286 (33%), Positives = 156/286 (53%), Gaps = 5/286 (1%)
Query: 1 MKVHYECLTCMATQCQRIAEMATQDLELRKKAMFLAAKLIAREYHENAIPAIAGSLVFLE 60
MKV+YEC C Q + ++AT D EL+ + M +L++ + + G+ +
Sbjct: 1 MKVYYECAPCFLRQAREAIDLATDDEELKLRVMENILELLSERFRRGQVSNELGTRMHRL 60
Query: 61 LYKFLGNDDPFKKYKERSNAIARDVVKLLKEKLDI--DFKTAVKLAIIGNVIDFSVGFSP 118
+ G++DP+ K R N IA + +++ L+ D ++ VK+AI GN+IDF
Sbjct: 61 IKDMTGSEDPYLDEKRRCNEIALRFLPTVRDYLECHSDLESHVKVAITGNIIDFGALGLD 120
Query: 119 EKLEEEVEKMLSEELYIDESDELLREIKRARSILYLTDNVGEHHFDAILLEKIKEVSRAE 178
+ +++ L L I+ L ++ A +LYL DN GE FD L+EK+
Sbjct: 121 FDHDRGIQESLRAPLTINHVPLLEDRLREASEVLYLLDNTGEILFDRPLIEKLAGYD-VS 179
Query: 179 LYIAGKEGAIINDVTVEDLKRDGFERFGRIVSTGTRIVGVPINDVSDEFRRIFEESDIII 238
+ +A K I+ND +ED G + IV+TGT VG+ +D+SDEFR + + ++++I
Sbjct: 180 VKVAVKGEPILNDACMEDALEAGLDEVAEIVTTGTDSVGIVYSDLSDEFRDMLDGTELVI 239
Query: 239 AKGQGNFETLSELKD--ERVFFLLKAKCPAVARELKVPRGALVCMR 282
AKG GN+E L+E+ D +F LL AKC A+AR+L V RG V ++
Sbjct: 240 AKGMGNYEGLTEISDGSRDIFCLLNAKCSAIARDLGVARGDNVAVK 285
>gi|11498704 conserved hypothetical protein [Archaeoglobus fulgidus]
>gi|7451010|pir||G69387 conserved hypothetical protein
AF1104 - Archaeoglobus fulgidus
>gi|2649480|gb|AAB90134.1| (AE001027) conserved
hypothetical protein [Archaeoglobus fulgidus]
Length = 288
Score = 150 bits (374), Expect = 2e-35
Identities = 94/287 (32%), Positives = 165/287 (56%), Gaps = 12/287 (4%)
Query: 1 MKVHYECLTCMATQCQRIAEMATQDLELRKKAMFLAAKLIAREYHENAIPAIAGSLVFLE 60
MK+ C +C+ + A++ T D +L + + + K++A Y I A + +
Sbjct: 1 MKISPLCPSCLLGRVYYEAKLVTDDEDLISQCVDESLKILAENYSSRPINAHLATRIHRR 60
Query: 61 LYKFLGNDDPFKKYKERSNAIARDVVKLLKEKL---DIDFKTAVKLAIIGNVIDFSVG-- 115
+Y+ LG +DP+ + K R+N +AR V+ L KE + D FKTAV ++I+GN D+ V
Sbjct: 61 VYEILGVEDPYAEVKARANEVARQVLPLAKEIVEGSDDPFKTAVIVSIVGNNFDYGVQGH 120
Query: 116 -FSPEKLEEEVEKMLSEELYIDESDELLREIKRARSILYLTDNVGEHHFDAILLEKIKEV 174
E+ + +++ + E L I+++ E ++E+ + ++YLTDN GE FD +L+++IK
Sbjct: 121 KVVEEEFRDFLKRKVQEGLKINDT-ERIKELSSGK-VVYLTDNAGEIFFDTLLMKEIKR- 177
Query: 175 SRAELYIAGKEGA-IINDVTVEDLKRDGFERFG-RIVSTGTRIVGVPINDVSDEFRRIFE 232
R E A G II+D T+ED + ++ +++ G +G+ ++++ DE R+ E
Sbjct: 178 -RCEKLTAVVRGRPIISDATIEDARLARVDKIADELLTNGKGAIGIIMDELPDETRKALE 236
Query: 233 ESDIIIAKGQGNFETLSELKDERVFFLLKAKCPAVARELKVPRGALV 279
E+D+I+AKG N+E LS+ + + FLL AKC VAR++ V G +V
Sbjct: 237 EADLIVAKGMANYECLSDGSLKPIAFLLTAKCEPVARDIGVNVGDMV 283
>pir||G70376 conserved hypothetical protein aq_893 - Aquifex aeolicus
>gi|2983423|gb|AAC07006.1| (AE000712) hypothetical
protein [Aquifex aeolicus]
Length = 283
Score = 147 bits (368), Expect = 1e-34
Identities = 93/281 (33%), Positives = 152/281 (53%), Gaps = 8/281 (2%)
Query: 1 MKVHYECLTCMATQCQRIAEMATQDLELRKKAMFLAAKLIAREYHENAIPAIAGSLVFLE 60
M+ H EC+ C+ Q + E + + K +++ + PA +
Sbjct: 1 MRAHPECIPCLINQGLNAVKKLNLPKEKEMEIATRSLKFLSQFDTFDRSPAYYAYFIQQI 60
Query: 61 LYKFLGNDDPFKKYKERSNAIARDVV-KLLKEKLDIDFKTAVKLAIIGNVIDFSVGFSPE 119
+ + G +DPFK K+ +N A++++ K+LK D+ K A+KL+ IGN IDF++
Sbjct: 61 VKEISGEEDPFKDLKKLANEKAQELLSKVLKGTPDL--KEALKLSAIGNFIDFAIK-GVF 117
Query: 120 KLEEEVEKMLSEELYIDESDELLREIKRARSILYLTDNVGEHHFDAILLEKIKEVSRAEL 179
LE E++K+L ++ I + D+ L ++ A+S+ + DN GE FD +L++ +K + + +
Sbjct: 118 DLERELQKLLDKDFLIFDYDKFLERLENAKSVFIIGDNAGEIVFDKVLVKTLKGMGKEVV 177
Query: 180 Y-IAGKEGAIINDVTVEDLKRDGFERFGRIVSTGTRIVGVPINDVSDEFRRIFEESDIII 238
Y + GK I+ND T+ED + R +++ G+ VG + D EF F SDI+I
Sbjct: 178 YGVKGKP--ILNDATLEDAEEVSMTRLCKVIDNGSDKVGTWLEDCKREFVETFYSSDIVI 235
Query: 239 AKGQGNFETLSELKDERVFFLLKAKCPAVARELKVPRGALV 279
+KGQ NFETLS D +FFLL AKC + RE RG L+
Sbjct: 236 SKGQANFETLSS-ADRDLFFLLVAKCDPIGRETGGKRGELI 275
>pir||F72409 conserved hypothetical protein - Thermotoga maritima (strain MSB8)
>gi|4980671|gb|AAD35269.1|AE001702_9 (AE001702)
conserved hypothetical protein [Thermotoga maritima]
Length = 293
Score = 145 bits (363), Expect = 5e-34
Identities = 89/290 (30%), Positives = 153/290 (52%), Gaps = 6/290 (2%)
Query: 1 MKVHYECLTCMATQCQRIAEMATQDLELRKKAMFLAAKLIAREYHENAIPAIAGSLVFLE 60
++ CL C Q + + + E ++ +F I E P V
Sbjct: 4 LRADERCLICSLRQAENLLKKTITSPE-KRWVIFREVFRIMSEMKWGMKPLEVNGEVHRF 62
Query: 61 LYKFLGNDDPFKKYKERSNAIARDVVKLLKEKL---DIDFKTAVKLAIIGNVIDFSV-GF 116
+ +++ +DPFK+ K RSN +A +V++ + ++ +A KLA+ GN+ID + G+
Sbjct: 63 IMEYIKEEDPFKEEKRRSNDMAIKLVEMFRPEILNSPDPVYSAAKLAVSGNLIDLGIPGW 122
Query: 117 SPEKLEEEVEKMLSEELYIDESDELLREIKRARSILYLTDNVGEHHFDAILLEKIK-EVS 175
S +++ E++ ++ ++ ++ + A ++ Y+ DN GE FD +E +K E
Sbjct: 123 SVDEIFEKLHEVYERPFDREDFEKFRNVLMNASTLFYVADNAGEIVFDKFFIEVLKMENP 182
Query: 176 RAELYIAGKEGAIINDVTVEDLKRDGFERFGRIVSTGTRIVGVPINDVSDEFRRIFEESD 235
E+ +A + IIND T+ED K G E ++S+G GV ++ S+EFR+ F E D
Sbjct: 183 SLEVVVAVRGKPIINDATIEDAKYIGLEEIATVISSGVDEPGVMLDKASEEFRKAFFEFD 242
Query: 236 IIIAKGQGNFETLSELKDERVFFLLKAKCPAVARELKVPRGALVCMRNAT 285
++I+KGQGNFE L E + + +FFLL AKC VA L VP G V + +++
Sbjct: 243 VVISKGQGNFEGLYEEEKKNLFFLLTAKCDFVAEVLNVPLGGKVFISSSS 292
>emb|CAB71142.1| (AJ271724) hypothetical protein OrfB [Eubacterium acidaminophilum]
Length = 238
Score = 114 bits (282), Expect = 1e-24
Identities = 73/229 (31%), Positives = 122/229 (52%), Gaps = 14/229 (6%)
Query: 65 LGNDDPFKKYKERSNAIARDVVKLLKEKL---DIDFKTAVKLAIIGNVIDFSVG--FSPE 119
LG DP+K K+R N+ + LLK +L + F A++L+ +GN+IDF F E
Sbjct: 12 LGESDPYKSEKQRFNSDMLQIYGLLKSRLSKGEEGFFEALRLSAVGNIIDFGANHYFDKE 71
Query: 120 KLEEEVEKMLSEELY-IDESDELLREIKRARSILYLTDNVGEHHFDAILLEKIK-EVSRA 177
E++ + S +++ ID S L ++K ++ +L + DN GE D +L+E+I+ E S
Sbjct: 72 MCYEKICNLCSRDIFAIDHSRRLYEKLKVSKQLLVIGDNCGEIVLDKLLIERIRSEFSDI 131
Query: 178 ELYIAGKEGAIINDVTVEDLKRDGFERFGRIVSTGTRIVGVPIND---VSDEFRRIFEES 234
++Y + + A++NDVT +D + G I+ GT + + FRRI
Sbjct: 132 KIYFSVRGKAVLNDVTSDDALQVGMGDLAIIIDDGTEAPVTVLPQRRMIQAHFRRIGSR- 190
Query: 235 DIIIAKGQGNFETLSELKDERVFFLLKAKCPAVARELKVPRGALVCMRN 283
+ GN+E LS++K + +FF+L AKCP ++ + VP VC+ N
Sbjct: 191 ---YCQRTGNYEGLSDIKRDGLFFVLMAKCPVISDYIGVPNLKCVCVEN 236
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.139 0.383
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96311811
Number of Sequences: 2977
Number of extensions: 3927155
Number of successful extensions: 12569
Number of sequences better than 1.0e-10: 8
Number of HSP's better than 0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 12544
Number of HSP's gapped (non-prelim): 8
length of query: 287
length of database: 189,106,746
effective HSP length: 58
effective length of query: 229
effective length of database: 154,394,500
effective search space: 35356340500
effective search space used: 35356340500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)